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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047053 Clavibacter michiganensis subsp. michiganensis strain MSF322 plasmid pMSF1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047051 Clavibacter michiganensis subsp. michiganensis strain MSF322 chromosome, complete genome 4 crisprs csa3,DEDDh,WYL,cas3 5 3 2 0
NZ_CP047052 Clavibacter michiganensis subsp. michiganensis strain MSF322 plasmid pMSF2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP047051
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047051_1 571439-571620 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047051_2 868259-868798 Orphan NA
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047051_3 1793504-1793574 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047051_4 2330344-2330522 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047051_2 2.5|868541|18|NZ_CP047051|CRT 868541-868558 18 NZ_CP047051.1 2953026-2953043 2 0.889
NZ_CP047051_2 2.5|868541|18|NZ_CP047051|CRT 868541-868558 18 NZ_CP047052.1 24927-24944 2 0.889
NZ_CP047051_2 2.8|868655|18|NZ_CP047051|CRT 868655-868672 18 NZ_CP047051.1 966125-966142 2 0.889
NZ_CP047051_2 2.8|868655|18|NZ_CP047051|CRT 868655-868672 18 NZ_CP047051.1 1253871-1253888 2 0.889
NZ_CP047051_2 2.8|868655|18|NZ_CP047051|CRT 868655-868672 18 NZ_CP047051.1 600944-600961 2 0.889
NZ_CP047051_2 2.8|868655|18|NZ_CP047051|CRT 868655-868672 18 NZ_CP047051.1 799867-799884 2 0.889
NZ_CP047051_2 2.8|868655|18|NZ_CP047051|CRT 868655-868672 18 NZ_CP047051.1 1866403-1866420 2 0.889
NZ_CP047051_2 2.9|868691|18|NZ_CP047051|CRT 868691-868708 18 NZ_CP047051.1 1499971-1499988 2 0.889
NZ_CP047051_2 2.9|868691|18|NZ_CP047051|CRT 868691-868708 18 NZ_CP047051.1 2414591-2414608 2 0.889
NZ_CP047051_2 2.10|868727|18|NZ_CP047051|CRT 868727-868744 18 NZ_CP047051.1 2316135-2316152 2 0.889
NZ_CP047051_2 2.10|868727|18|NZ_CP047051|CRT 868727-868744 18 NZ_CP047051.1 410317-410334 2 0.889
NZ_CP047051_2 2.11|868763|18|NZ_CP047051|CRT 868763-868780 18 NZ_CP047051.1 868241-868258 2 0.889
NZ_CP047051_2 2.11|868763|18|NZ_CP047051|CRT 868763-868780 18 NZ_CP047051.1 2316135-2316152 2 0.889

1. spacer 2.5|868541|18|NZ_CP047051|CRT matches to position: 2953026-2953043, mismatch: 2, identity: 0.889

cgtccggctcgcggcgag	CRISPR spacer
cgtcgggctcgcggggag	Protospacer
**** ********* ***

2. spacer 2.5|868541|18|NZ_CP047051|CRT matches to position: 24927-24944, mismatch: 2, identity: 0.889

cgtccggctcgcggcgag	CRISPR spacer
cgtccgggccgcggcgag	Protospacer
******* .*********

3. spacer 2.8|868655|18|NZ_CP047051|CRT matches to position: 966125-966142, mismatch: 2, identity: 0.889

cgcgccgagcgatccgag	CRISPR spacer
cgcgtcgagggatccgag	Protospacer
****.**** ********

4. spacer 2.8|868655|18|NZ_CP047051|CRT matches to position: 1253871-1253888, mismatch: 2, identity: 0.889

cgcgccgagcgatccgag	CRISPR spacer
cgcgccgagcgagacgag	Protospacer
************  ****

5. spacer 2.8|868655|18|NZ_CP047051|CRT matches to position: 600944-600961, mismatch: 2, identity: 0.889

cgcgccgagcgatccgag	CRISPR spacer
cgcgccgagcgcgccgag	Protospacer
***********  *****

6. spacer 2.8|868655|18|NZ_CP047051|CRT matches to position: 799867-799884, mismatch: 2, identity: 0.889

cgcgccgagcgatccgag	CRISPR spacer
cgccccgtgcgatccgag	Protospacer
*** *** **********

7. spacer 2.8|868655|18|NZ_CP047051|CRT matches to position: 1866403-1866420, mismatch: 2, identity: 0.889

cgcgccgagcgatccgag	CRISPR spacer
cgcgccgagcgactcgag	Protospacer
************..****

8. spacer 2.9|868691|18|NZ_CP047051|CRT matches to position: 1499971-1499988, mismatch: 2, identity: 0.889

cgcccggctcgcacggag	CRISPR spacer
cgcccgcatcgcacggag	Protospacer
******  **********

9. spacer 2.9|868691|18|NZ_CP047051|CRT matches to position: 2414591-2414608, mismatch: 2, identity: 0.889

cgcccggctcgcacggag	CRISPR spacer
cgcccggctccctcggag	Protospacer
********** * *****

10. spacer 2.10|868727|18|NZ_CP047051|CRT matches to position: 2316135-2316152, mismatch: 2, identity: 0.889

cgcccgcagcggtccgag	CRISPR spacer
cgcccgcagcgcaccgag	Protospacer
***********  *****

11. spacer 2.10|868727|18|NZ_CP047051|CRT matches to position: 410317-410334, mismatch: 2, identity: 0.889

cgcccgcagcggtccgag	CRISPR spacer
cgcccgcagcgagccgag	Protospacer
***********. *****

12. spacer 2.11|868763|18|NZ_CP047051|CRT matches to position: 868241-868258, mismatch: 2, identity: 0.889

cgcccccagcgcagcgag	CRISPR spacer
cgcggccagcgcagcgag	Protospacer
***  *************

13. spacer 2.11|868763|18|NZ_CP047051|CRT matches to position: 2316135-2316152, mismatch: 2, identity: 0.889

cgcccccagcgcagcgag	CRISPR spacer
cgcccgcagcgcaccgag	Protospacer
***** ******* ****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047051_4 4.1|2330367|22|NZ_CP047051|CRISPRCasFinder 2330367-2330388 22 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 122336-122357 2 0.909
NZ_CP047051_4 4.1|2330367|22|NZ_CP047051|CRISPRCasFinder 2330367-2330388 22 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 387077-387098 2 0.909
NZ_CP047051_4 4.1|2330367|22|NZ_CP047051|CRISPRCasFinder 2330367-2330388 22 NZ_CP022567 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence 180166-180187 2 0.909
NZ_CP047051_4 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder 2330412-2330433 22 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 217187-217208 2 0.909
NZ_CP047051_4 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder 2330412-2330433 22 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 205311-205332 2 0.909
NZ_CP047051_4 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder 2330412-2330433 22 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 206192-206213 2 0.909
NZ_CP047051_4 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder 2330412-2330433 22 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 708322-708343 2 0.909
NZ_CP047051_4 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder 2330412-2330433 22 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 1424058-1424079 2 0.909
NZ_CP047051_3 3.1|1793527|25|NZ_CP047051|CRISPRCasFinder 1793527-1793551 25 NZ_CP030367 Salinibacter ruber strain M1 plasmid pSR61, complete sequence 3140-3164 3 0.88

1. spacer 4.1|2330367|22|NZ_CP047051|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgccttcttcgccgtcgactt	CRISPR spacer
tcgccttcttcggcgtcgactg	Protospacer
************ ******** 

2. spacer 4.1|2330367|22|NZ_CP047051|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgccttcttcgccgtcgactt	CRISPR spacer
tcgccttcttcggcgtcgactg	Protospacer
************ ******** 

3. spacer 4.1|2330367|22|NZ_CP047051|CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 2, identity: 0.909

tcgccttcttcgccgtcgactt	CRISPR spacer
tcgccttcatcgccgtcgactg	Protospacer
******** ************ 

4. spacer 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
ccgtcgacaccgcgcccgagga	Protospacer
.******* *************

5. spacer 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
ccgtcgacaccgcgcccgagga	Protospacer
.******* *************

6. spacer 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
ccgtcgacaccgcgcccgagga	Protospacer
.******* *************

7. spacer 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
acgtcgactcctcgcccgagga	Protospacer
 ********** **********

8. spacer 4.2|2330412|22|NZ_CP047051|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
acgtcgactcctcgcccgagga	Protospacer
 ********** **********

9. spacer 3.1|1793527|25|NZ_CP047051|CRISPRCasFinder matches to NZ_CP030367 (Salinibacter ruber strain M1 plasmid pSR61, complete sequence) position: , mismatch: 3, identity: 0.88

aagacgagggacatctccgaccccg	CRISPR spacer
acgaggagagacatctccgaccccg	Protospacer
* ** ***.****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 956503 : 966418 9 Pandoravirus(25.0%) tRNA,protease NA
DBSCAN-SWA_2 1150805 : 1157702 8 Escherichia_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP047052
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage