CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP047380	Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence	0 crisprs	NA	0	1
NZ_CP047384	Escherichia coli strain CAU16175 plasmid pCAU16175_6, complete sequence	0 crisprs	NA	0	0
NZ_CP047381	Escherichia coli strain CAU16175 plasmid pCAU16175_3, complete sequence	0 crisprs	NA	0	0
NZ_CP047383	Escherichia coli strain CAU16175 plasmid pCAU16175_5, complete sequence	0 crisprs	NA	0	0
NZ_CP047378	Escherichia coli strain CAU16175 chromosome, complete genome	3 crisprs	DEDDh,c2c9_V-U4,DinG,PrimPol,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	11	22
NZ_CP047379	Escherichia coli strain CAU16175 plasmid pCAU16175_1, complete sequence	0 crisprs	NA	0	2
NZ_CP047382	Escherichia coli strain CAU16175 plasmid pCAU16175_4, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1262 : 93109

Escherichia_phage(60.0%)

transposase,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001066942.1\|1262_2003_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_032351338.1\|2123_2267_-	hypothetical protein	NA	NA	NA	NA
WP_024241295.1\|2789_3164_-	hypothetical protein	NA	NA	NA	NA
WP_000526859.1\|3366_3546_+	hypothetical protein	NA	NA	NA	NA
WP_024241296.1\|3794_4232_+	hypothetical protein	NA	NA	NA	NA
WP_045903391.1\|4612_5116_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.4e-48	97.1
WP_162829242.1\|6031_7245_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_167583024.1\|8600_13304_-	DUF3491 domain-containing protein	NA	NA	NA	NA
WP_001297096.1\|21154_21934_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000905839.1\|23829_24417_+	serine acetyltransferase	NA	NA	NA	NA
WP_029797792.1\|25862_25988_-	membrane protein	NA	NA	NA	NA
WP_001418709.1\|26096_26705_-	YjiK family protein	NA	NA	NA	NA
WP_162829242.1\|31776_32990_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_167583026.1\|33041_33668_-	peptidase dimerisation domain-containing protein	NA	NA	NA	NA
WP_000957857.1\|34922_35111_-	hypothetical protein	NA	NA	NA	NA
WP_032163645.1\|49129_49828_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-18	42.5
WP_167583051.1\|49764_49989_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.8e-21	73.3
WP_000405636.1\|50578_50848_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_096317679.1\|54737_58679_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	2.2e-226	39.2
WP_032163643.1\|58770_59238_+	EspF protein	NA	NA	NA	NA
WP_096317678.1\|59496_60658_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.6e-52	40.6
WP_000957857.1\|62069_62258_-	hypothetical protein	NA	NA	NA	NA
WP_161954550.1\|63843_65151_+	iron reductase	NA	NA	NA	NA
WP_096317730.1\|65639_66221_+	secretion protein EspT	NA	NA	NA	NA
WP_096317729.1\|66412_66736_+	hypothetical protein	NA	NA	NA	NA
WP_106485644.1\|66871_67201_-	hypothetical protein	NA	NA	NA	NA
WP_032216024.1\|67309_68290_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	3.0e-185	99.1
WP_162829242.1\|68617_69831_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_085949012.1\|72201_72895_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_001632354.1\|73652_73811_+	hypothetical protein	NA	NA	NA	NA
WP_064560668.1\|73828_74176_-	hypothetical protein	NA	NA	NA	NA
WP_001311056.1\|74471_74954_-	hypothetical protein	NA	NA	NA	NA
WP_096245924.1\|75070_75274_-	hypothetical protein	NA	NA	NA	NA
WP_050439874.1\|75922_76147_-	hypothetical protein	NA	NA	NA	NA
WP_001541974.1\|76398_76728_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2I6TCA4	Escherichia_phage	6.3e-18	45.1
WP_000780222.1\|76708_76990_+	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_167567414.1\|77895_79058_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.0e-163	96.3
WP_001172748.1\|79219_79609_-	cytochrome b562 family protein	NA	NA	NA	NA
WP_167583029.1\|79652_81860_-	catalase/peroxidase KatP	NA	NA	NA	NA
WP_085949012.1\|82072_82767_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_064560619.1\|83365_87457_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	2.8e-285	42.6
WP_085949012.1\|87659_88353_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_000969996.1\|88488_88770_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_044720349.1\|88766_89036_-	hypothetical protein	NA	NA	NA	NA
WP_077150956.1\|89538_90162_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.4e-41	49.7
WP_072024409.1\|90142_93109_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.6e-181	38.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047378

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047378_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047378_1

2620258-2620381

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047378_1

>merge|NZ_CP047378|1|2620258-2620381|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP047378|1|1|2620258-2620381|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047378.1\|WP_000716921.1\|2618087_2619692_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP047378.1\|WP_001295403.1\|2609711_2611124_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP047378.1\|WP_000701040.1\|2629532_2630702_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP047378.1\|WP_001069997.1\|2616474_2617260_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP047378.1\|WP_000007283.1\|2630847_2631429_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP047378.1\|WP_001070230.1\|2612345_2612972_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP047378.1\|WP_000493947.1\|2623580_2624222_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP047378.1\|WP_001182363.1\|2625700_2626912_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP047378.1\|WP_000528342.1\|2611680_2611890_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP047378.1\|WP_096317373.1\|2612992_2615095_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP047378.1\|WP_000098896.1\|2624261_2625410_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP047378.1\|WP_000190982.1\|2627953_2628979_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP047378.1\|WP_001310861.1\|2615809_2616478_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP047378.1\|WP_001297805.1\|2615107_2615746_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP047378.1\|WP_000102278.1\|2629277_2629367_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP047378.1\|WP_000534296.1\|2620695_2621952_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP047378.1\|WP_096245371.1\|2621992_2623366_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP047378.1\|WP_000587560.1\|2617263_2618076_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP047378.1\|WP_000269501.1\|2627024_2627957_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP047378.1\|WP_000212657.1\|2619817_2620123_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975

Protein	Function_ID	Function_description	E-value
NZ_CP047378.1\|WP_000716921.1\|2618087_2619692_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP047378.1\|WP_001295403.1\|2609711_2611124_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP047378.1\|WP_000701040.1\|2629532_2630702_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP047378.1\|WP_001069997.1\|2616474_2617260_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.33298e-163
NZ_CP047378.1\|WP_000007283.1\|2630847_2631429_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP047378.1\|WP_001070230.1\|2612345_2612972_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP047378.1\|WP_000493947.1\|2623580_2624222_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP047378.1\|WP_001182363.1\|2625700_2626912_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP047378.1\|WP_000528342.1\|2611680_2611890_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP047378.1\|WP_096317373.1\|2612992_2615095_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP047378.1\|WP_000098896.1\|2624261_2625410_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP047378.1\|WP_000190982.1\|2627953_2628979_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP047378.1\|WP_001310861.1\|2615809_2616478_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
NZ_CP047378.1\|WP_001297805.1\|2615107_2615746_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.93584e-120
NZ_CP047378.1\|WP_000534296.1\|2620695_2621952_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP047378.1\|WP_096245371.1\|2621992_2623366_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP047378.1\|WP_000587560.1\|2617263_2618076_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	8.20825e-175
NZ_CP047378.1\|WP_000269501.1\|2627024_2627957_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP047378.1\|WP_000212657.1\|2619817_2620123_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64

>NZ_CP047378.1|WP_000212657.1|2619817_2620123_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP047378.1|WP_000716921.1|2618087_2619692_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDIGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP047378.1|WP_000587560.1|2617263_2618076_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC
>NZ_CP047378.1|WP_001069997.1|2616474_2617260_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP047378.1|WP_001310861.1|2615809_2616478_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP047378.1|WP_001297805.1|2615107_2615746_+|YdhW-family-putative-oxidoreductase-system-protein
MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP047378.1|WP_096317373.1|2612992_2615095_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGSHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>NZ_CP047378.1|WP_001070230.1|2612345_2612972_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP047378.1|WP_000528342.1|2611680_2611890_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP047378.1|WP_001295403.1|2609711_2611124_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP047378.1|WP_000534296.1|2620695_2621952_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIRVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP047378.1|WP_096245371.1|2621992_2623366_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSSIILQRASR
>NZ_CP047378.1|WP_000493947.1|2623580_2624222_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP047378.1|WP_000098896.1|2624261_2625410_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP047378.1|WP_001182363.1|2625700_2626912_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP047378.1|WP_000269501.1|2627024_2627957_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP047378.1|WP_000190982.1|2627953_2628979_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP047378.1|WP_000102278.1|2629277_2629367_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP047378.1|WP_000701040.1|2629532_2630702_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP047378.1|WP_000007283.1|2630847_2631429_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP047378_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047378_2

4425658-4425869

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

3 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP047378_2

>merge|NZ_CP047378|2|4425658-4425869|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACAAAACCAAACTTCTCCATAAATTCCATAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGTCTATCAGCGACACTACCGGCAATAGCGACGGTTTATCCCCGCTGGCGCGGGGAACACGAGAGTGCTGACAGGTGTCTCGATTACCTGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP047378|2|1|4425658-4425869|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCTATCAGCGACACTACCGGCAATAGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP047378|2|2|4425658-4425869|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCTATCAGCGACACTACCGGCAATAGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP047378|2|1|4425658-4425869|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCTATCAGCGACACTACCGGCAATAGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047378.1\|WP_000029342.1\|4429631_4430171_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP047378.1\|WP_001300563.1\|4434880_4435993_-\|IS4-like-element-IS421-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP047378.1\|WP_000490429.1\|4424538_4425576_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP047378.1\|WP_096317342.1\|4430167_4431730_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP047378.1\|WP_001219242.1\|4419258_4419738_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP047378.1\|WP_000206431.1\|4428564_4429620_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP047378.1\|WP_000372108.1\|4423378_4424287_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP047378.1\|WP_001173673.1\|4421344_4421950_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP047378.1\|WP_000144863.1\|4426258_4427179_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP047378.1\|WP_001246104.1\|4420971_4421295_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP047378.1\|WP_000281442.1\|4427175_4427826_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP047378.1\|WP_096317341.1\|4418212_4419262_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP047378.1\|WP_001233933.1\|4431827_4434527_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP047378.1\|WP_001090394.1\|4421949_4423377_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP047378.1\|WP_000063176.1\|4425965_4426259_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP047378.1\|WP_000085068.1\|4427807_4428554_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP047378.1\|WP_000956458.1\|4436069_4436222_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP047378.1\|WP_000246138.1\|4419737_4420448_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP047378.1\|WP_000517476.1\|4420466_4420778_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP047378.1\|WP_001295182.1\|4417470_4418232_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
NZ_CP047378.1\|WP_000029342.1\|4429631_4430171_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.30002e-26
NZ_CP047378.1\|WP_001300563.1\|4434880_4435993_-\|IS4-like-element-IS421-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.16058e-15
NZ_CP047378.1\|WP_000490429.1\|4424538_4425576_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP047378.1\|WP_096317342.1\|4430167_4431730_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP047378.1\|WP_001219242.1\|4419258_4419738_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP047378.1\|WP_000206431.1\|4428564_4429620_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.10696e-155
NZ_CP047378.1\|WP_000372108.1\|4423378_4424287_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP047378.1\|WP_001173673.1\|4421344_4421950_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP047378.1\|WP_000144863.1\|4426258_4427179_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.23259e-157
NZ_CP047378.1\|WP_001246104.1\|4420971_4421295_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP047378.1\|WP_000281442.1\|4427175_4427826_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.04911e-92
NZ_CP047378.1\|WP_096317341.1\|4418212_4419262_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP047378.1\|WP_001233933.1\|4431827_4434527_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.31706e-179
NZ_CP047378.1\|WP_001090394.1\|4421949_4423377_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP047378.1\|WP_000063176.1\|4425965_4426259_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP047378.1\|WP_000085068.1\|4427807_4428554_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.95914e-49
NZ_CP047378.1\|WP_000956458.1\|4436069_4436222_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP047378.1\|WP_000246138.1\|4419737_4420448_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP047378.1\|WP_000517476.1\|4420466_4420778_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP047378.1\|WP_001295182.1\|4417470_4418232_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150

>NZ_CP047378.1|WP_000490429.1|4424538_4425576_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP047378.1|WP_000372108.1|4423378_4424287_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP047378.1|WP_001090394.1|4421949_4423377_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGSKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP047378.1|WP_001173673.1|4421344_4421950_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP047378.1|WP_001246104.1|4420971_4421295_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP047378.1|WP_000517476.1|4420466_4420778_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP047378.1|WP_000246138.1|4419737_4420448_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP047378.1|WP_001219242.1|4419258_4419738_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP047378.1|WP_096317341.1|4418212_4419262_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLNDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAERGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP047378.1|WP_001295182.1|4417470_4418232_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP047378.1|WP_000063176.1|4425965_4426259_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP047378.1|WP_000144863.1|4426258_4427179_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPQPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NZ_CP047378.1|WP_000281442.1|4427175_4427826_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFVQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP047378.1|WP_000085068.1|4427807_4428554_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP047378.1|WP_000206431.1|4428564_4429620_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP047378.1|WP_000029342.1|4429631_4430171_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWREELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP047378.1|WP_096317342.1|4430167_4431730_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWQDGLEAEKLREALLSLEHAFQFGADSPSFMQGFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP047378.1|WP_001233933.1|4431827_4434527_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NZ_CP047378.1|WP_001300563.1|4434880_4435993_-|IS4-like-element-IS421-family-transposase
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN
>NZ_CP047378.1|WP_000956458.1|4436069_4436222_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK

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Crispr_ID: NZ_CP047378_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047378_3

4452920-4453741

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGA	PILER-CR

13 spacers

The CRISPR arrays of NZ_CP047378_3

>merge|NZ_CP047378|3|4452920-4453741|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAGCTCAACATCGGAAACGGCTTCGCGGCGGCGGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAGCTCTACGTGAAGAATATTTGCAACACCCGCAAGAACGGTTTATCCCCGCTGGCGCGGGGAGCTCGGCATAGCCAGGCTGATCCGGCGACGGCCTTACGGTTTATCCCCGCTGGCGCGGGGAACACATCAACATGCAGCGCGAACGGCTGCCCCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAATCGTGTGTAAATTCGCGGCGGCTCCACTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTGGTCGAAATATAGACAGCATGTTCCGTACCACGGTTTATCCCCGCTGGCGCGGGGAACACATTTTGCTGGGAGTCATTCCCAGCTCCGTAATCGGTTTATCCCCGCTGGCGCGGGGAACACTCCAACCTTCCATGAGATACGCGCATTAGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACCGTGACCGCCTGTACACGCTGTAATGGCTCACCGGTTTATCCCCGCTGGCGCGGGGAACACACACTATCCGGGCGGTATTACGCCCAAATATCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCCGGGTGAAACCACTCGCGGCAGATCTTGCGGTTTATCCCCGCTGGCGCGGGGAACACACTACTGTCGGTAGCTGGGAGGATGAGGAGATCAGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP047378|3|3|4452920-4453741|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAGCTC	AACATCGGAAACGGCTTCGCGGCGGCGGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAGCTC	TACGTGAAGAATATTTGCAACACCCGCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAGCTC	GGCATAGCCAGGCTGATCCGGCGACGGCCTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAACATGCAGCGCGAACGGCTGCCCCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCGTGTGTAAATTCGCGGCGGCTCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGTCGAAATATAGACAGCATGTTCCGTACCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTGCTGGGAGTCATTCCCAGCTCCGTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCAACCTTCCATGAGATACGCGCATTAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTGACCGCCTGTACACGCTGTAATGGCTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACACTATCCGGGCGGTATTACGCCCAAATATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCCGGGTGAAACCACTCGCGGCAGATCTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTACTGTCGGTAGCTGGGAGGATGAGGAGAT
CAGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP047378|3|2|4452920-4453739|CRT
TGGTTTATCCCCGCTGGCGCGGGGAGC	TCAACATCGGAAACGGCTTCGCGGCGGCGGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAAC	TCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAGC	TCTACGTGAAGAATATTTGCAACACCCGCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAGC	TCGGCATAGCCAGGCTGATCCGGCGACGGCCTTA
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACATCAACATGCAGCGCGAACGGCTGCCCCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACAATCGTGTGTAAATTCGCGGCGGCTCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACTGGTCGAAATATAGACAGCATGTTCCGTACCA
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACATTTTGCTGGGAGTCATTCCCAGCTCCGTAAT
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACTCCAACCTTCCATGAGATACGCGCATTAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACCGTGACCGCCTGTACACGCTGTAATGGCTCAC
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACACACTATCCGGGCGGTATTACGCCCAAATATC
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACCTGCCGGGTGAAACCACTCGCGGCAGATCTTG
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACACTACTGTCGGTAGCTGGGAGGATGAGGAGAT
CAGTTTATCCCCGCTGGCGCGGGGAAC

>NZ_CP047378|3|2|4452921-4453737|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAG	CTCAACATCGGAAACGGCTTCGCGGCGGCGGCGTCC
GGTTTATCCCCGCTGGCGCGGGGAA	CTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC
GGTTTATCCCCGCTGGCGCGGGGAG	CTCTACGTGAAGAATATTTGCAACACCCGCAAGAAC
GGTTTATCCCCGCTGGCGCGGGGAG	CTCGGCATAGCCAGGCTGATCCGGCGACGGCCTTAC
GGTTTATCCCCGCTGGCGCGGGGAA	CACATCAACATGCAGCGCGAACGGCTGCCCCTCGCC
GGTTTATCCCCGCTGGCGCGGGGAA	CACAATCGTGTGTAAATTCGCGGCGGCTCCACTGGC
GGTTTATCCCCGCTGGCGCGGGGAA	CACTGGTCGAAATATAGACAGCATGTTCCGTACCAC
GGTTTATCCCCGCTGGCGCGGGGAA	CACATTTTGCTGGGAGTCATTCCCAGCTCCGTAATC
GGTTTATCCCCGCTGGCGCGGGGAA	CACTCCAACCTTCCATGAGATACGCGCATTAGCGGC
GGTTTATCCCCGCTGGCGCGGGGAA	CACCGTGACCGCCTGTACACGCTGTAATGGCTCACC
GGTTTATCCCCGCTGGCGCGGGGAA	CACACACTATCCGGGCGGTATTACGCCCAAATATCC
GGTTTATCCCCGCTGGCGCGGGGAA	CACCTGCCGGGTGAAACCACTCGCGGCAGATCTTGC
GGTTTATCCCCGCTGGCGCGGGGAA	CACACTACTGTCGGTAGCTGGGAGGATGAGGAGATC
AGTTTATCCCCGCTGGCGCGGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047378.1\|WP_106505139.1\|4449498_4450776_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP047378.1\|WP_001130266.1\|4443103_4443679_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP047378.1\|WP_000226815.1\|4460750_4462985_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP047378.1\|WP_000147666.1\|4445440_4446850_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP047378.1\|WP_000109367.1\|4442826_4443087_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP047378.1\|WP_001268451.1\|4455044_4455917_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP047378.1\|WP_000907720.1\|4443826_4444720_-\|Putative-electron-transfer-flavoprotein-subunit-ygcQ	unknown	unknown	gnl\|CDD\|224936
NZ_CP047378.1\|WP_000036723.1\|4455976_4457275_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP047378.1\|WP_000046800.1\|4463032_4464334_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP047378.1\|WP_000039758.1\|4450802_4452281_+\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP047378.1\|WP_000987944.1\|4441121_4441487_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP047378.1\|WP_000210878.1\|4457362_4459000_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP047378.1\|WP_000254745.1\|4460089_4460425_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP047378.1\|WP_001288227.1\|4454890_4455031_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047378.1\|WP_000581937.1\|4460424_4460673_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP047378.1\|WP_001199970.1\|4454080_4454752_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP047378.1\|WP_001299098.1\|4441564_4442836_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP047378.1\|WP_001341835.1\|4444683_4445463_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP047378.1\|WP_001071648.1\|4459227_4460019_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP047378.1\|WP_000059312.1\|4446871_4448326_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NZ_CP047378.1\|WP_106505139.1\|4449498_4450776_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	6.9031e-28
NZ_CP047378.1\|WP_001130266.1\|4443103_4443679_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP047378.1\|WP_000226815.1\|4460750_4462985_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP047378.1\|WP_000147666.1\|4445440_4446850_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP047378.1\|WP_000109367.1\|4442826_4443087_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42
NZ_CP047378.1\|WP_001268451.1\|4455044_4455917_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.01855e-100
NZ_CP047378.1\|WP_000907720.1\|4443826_4444720_-\|Putative-electron-transfer-flavoprotein-subunit-ygcQ	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	5.16091e-89
NZ_CP047378.1\|WP_000036723.1\|4455976_4457275_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP047378.1\|WP_000046800.1\|4463032_4464334_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP047378.1\|WP_000039758.1\|4450802_4452281_+\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.28272e-107
NZ_CP047378.1\|WP_000987944.1\|4441121_4441487_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP047378.1\|WP_000210878.1\|4457362_4459000_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP047378.1\|WP_000254745.1\|4460089_4460425_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP047378.1\|WP_000581937.1\|4460424_4460673_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP047378.1\|WP_001199970.1\|4454080_4454752_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.73859e-155
NZ_CP047378.1\|WP_001299098.1\|4441564_4442836_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.77152e-127
NZ_CP047378.1\|WP_001341835.1\|4444683_4445463_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	3.2021e-62
NZ_CP047378.1\|WP_001071648.1\|4459227_4460019_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP047378.1\|WP_000059312.1\|4446871_4448326_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82

>NZ_CP047378.1|WP_000039758.1|4450802_4452281_+|FGGY-family-carbohydrate-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGSVVCEGKGLLQPMHTPYADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP047378.1|WP_106505139.1|4449498_4450776_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHCKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEVRTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP047378.1|WP_000059312.1|4446871_4448326_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP047378.1|WP_000147666.1|4445440_4446850_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP047378.1|WP_001341835.1|4444683_4445463_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRIEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP047378.1|WP_000907720.1|4443826_4444720_-|Putative-electron-transfer-flavoprotein-subunit-ygcQ
MAGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAVKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP047378.1|WP_001130266.1|4443103_4443679_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP047378.1|WP_000109367.1|4442826_4443087_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP047378.1|WP_001299098.1|4441564_4442836_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEEEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLEPSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP047378.1|WP_000987944.1|4441121_4441487_+|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP047378.1|WP_001199970.1|4454080_4454752_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP047378.1|WP_001288227.1|4454890_4455031_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP047378.1|WP_001268451.1|4455044_4455917_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKFAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVYISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGKSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP047378.1|WP_000036723.1|4455976_4457275_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP047378.1|WP_000210878.1|4457362_4459000_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP047378.1|WP_001071648.1|4459227_4460019_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP047378.1|WP_000254745.1|4460089_4460425_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP047378.1|WP_000581937.1|4460424_4460673_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP047378.1|WP_000226815.1|4460750_4462985_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP047378.1|WP_000046800.1|4463032_4464334_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVAVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047378_1	1.1\|2620301\|38\|NZ_CP047378\|CRISPRCasFinder	2620301-2620338	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP047378_2	2.1\|4425687\|32\|NZ_CP047378\|PILER-CR,CRISPRCasFinder,CRT	4425687-4425718	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
NZ_CP047378_3	3.1\|4452949\|32\|NZ_CP047378\|CRISPRCasFinder	4452949-4452980	32	KR080197	Mycobacterium phage FlagStaff, complete genome	15476-15507	7	0.781
NZ_CP047378_3	3.5\|4453193\|32\|NZ_CP047378\|CRISPRCasFinder	4453193-4453224	32	NZ_CP010860	Marinovum algicola DG 898 plasmid pMaD5, complete sequence	101414-101445	7	0.781
NZ_CP047378_3	3.1\|4452949\|32\|NZ_CP047378\|CRISPRCasFinder	4452949-4452980	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15449	8	0.75
NZ_CP047378_3	3.2\|4453010\|32\|NZ_CP047378\|CRISPRCasFinder	4453010-4453041	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
NZ_CP047378_3	3.5\|4453193\|32\|NZ_CP047378\|CRISPRCasFinder	4453193-4453224	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	347166-347197	8	0.75
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NC_012852	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence	256608-256639	8	0.75
NZ_CP047378_2	2.3\|4425809\|32\|NZ_CP047378\|PILER-CR,CRISPRCasFinder,CRT	4425809-4425840	32	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	32377-32408	9	0.719
NZ_CP047378_3	3.1\|4452949\|32\|NZ_CP047378\|CRISPRCasFinder	4452949-4452980	32	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139210-139241	9	0.719
NZ_CP047378_3	3.4\|4453132\|32\|NZ_CP047378\|CRISPRCasFinder	4453132-4453163	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224876-224907	9	0.719
NZ_CP047378_3	3.5\|4453193\|32\|NZ_CP047378\|CRISPRCasFinder	4453193-4453224	32	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	89227-89258	9	0.719
NZ_CP047378_3	3.5\|4453193\|32\|NZ_CP047378\|CRISPRCasFinder	4453193-4453224	32	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	361520-361551	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	196778-196809	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP050101	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence	151768-151799	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	508685-508716	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP025016	Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence	133778-133809	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NC_008379	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence	180274-180305	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	151061-151092	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	21422-21453	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	499023-499054	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	106143-106174	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	508869-508900	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP048283	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence	130036-130067	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	172635-172666	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP022668	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence	387130-387161	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	4795-4826	9	0.719
NZ_CP047378_3	3.13\|4453681\|32\|NZ_CP047378\|CRISPRCasFinder	4453681-4453712	32	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	158950-158981	9	0.719
NZ_CP047378_3	3.18\|4453191\|34\|NZ_CP047378\|CRT	4453191-4453224	34	NZ_CP010860	Marinovum algicola DG 898 plasmid pMaD5, complete sequence	101414-101447	9	0.735
NZ_CP047378_3	3.1\|4452949\|32\|NZ_CP047378\|CRISPRCasFinder	4452949-4452980	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	14130-14161	10	0.688
NZ_CP047378_3	3.5\|4453193\|32\|NZ_CP047378\|CRISPRCasFinder	4453193-4453224	32	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	354311-354342	10	0.688
NZ_CP047378_3	3.14\|4452947\|34\|NZ_CP047378\|CRT	4452947-4452980	34	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15451	10	0.706
NZ_CP047378_3	3.14\|4452947\|34\|NZ_CP047378\|CRT	4452947-4452980	34	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139208-139241	11	0.676
NZ_CP047378_3	3.17\|4453130\|34\|NZ_CP047378\|CRT	4453130-4453163	34	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224874-224907	11	0.676

1. spacer 1.1|2620301|38|NZ_CP047378|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

2. spacer 2.1|4425687|32|NZ_CP047378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

3. spacer 3.1|4452949|32|NZ_CP047378|CRISPRCasFinder matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
aacccggcgaacggcatcgcggcgccggcgtc	Protospacer
*** . * .****** ******** *******

4. spacer 3.5|4453193|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 7, identity: 0.781

atcaacatgcagcgcgaacggctg---cccctcgc	CRISPR spacer
atccacatgcagctcgaacggctgaaatcgct---	Protospacer
*** ********* **********   .* **

5. spacer 3.1|4452949|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggctgtggaaagggctgcgcggcggcggcgac	Protospacer
..*  .***** **** ************* *

6. spacer 3.2|4453010|32|NZ_CP047378|CRISPRCasFinder matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

-gacagaacggcctcagtagtctcgtcaggctc	CRISPR spacer
ccaccg-ctggccccagtagcctcgtcaggctt	Protospacer
  ** *  .****.******.***********.

7. spacer 3.5|4453193|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atcaaca--tgcagcgcgaacggctgcccctcgc	CRISPR spacer
--cagcgcctgcagcgcgaacggctgcgactcca	Protospacer
  **.*.  ******************  ***

8. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NC_012852 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence) position: , mismatch: 8, identity: 0.75

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggtgctgtcgggagcggggaggatgagagaat	Protospacer
. *.******* *** ***********...**

9. spacer 2.3|4425809|32|NZ_CP047378|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

gagagtgctgacaggtgtctcgattacctgat	CRISPR spacer
ggctttgctggcaggtctctcgattaccttgg	Protospacer
*.   *****.***** ************ .

10. spacer 3.1|4452949|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
cccgggaaaaacgggttcgcggcggcggcttc	Protospacer
  *.  ..****** ************** **

11. spacer 3.4|4453132|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatagccaggctgatccggcgacggcctta	CRISPR spacer
gcagcagaccggctgatccggcgacggccccg	Protospacer
*  ..** * *******************...

12. spacer 3.5|4453193|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

atcaacatgcagcgcgaacggctgcccctcgc	CRISPR spacer
caggagttccagcgcgaacggcagcgcctcgc	Protospacer
   .*  * ************* ** ******

13. spacer 3.5|4453193|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 9, identity: 0.719

atcaacatgcagcgcgaacggctgcccctcgc	CRISPR spacer
gccttcgagcagcgccagcggctgcccctcga	Protospacer
..*  *. ******* *.*************

14. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

15. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP050101 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

16. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

17. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP025016 (Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

18. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NC_008379 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

19. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

20. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

21. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

22. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

23. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

24. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP048283 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

25. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

26. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

27. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

28. spacer 3.13|4453681|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

29. spacer 3.18|4453191|34|NZ_CP047378|CRT matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 9, identity: 0.735

acatcaacatgcagcgcgaacggctg---cccctcgc	CRISPR spacer
cgatccacatgcagctcgaacggctgaaatcgct---	Protospacer
  *** ********* **********   .* **

30. spacer 3.1|4452949|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
gaggacggaagcggcttcgccgcggcgggcaa	Protospacer
.* . *****.********* *******

31. spacer 3.5|4453193|32|NZ_CP047378|CRISPRCasFinder matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

atcaacatgcagcgcgaacggctgcccctcgc	CRISPR spacer
ggtttcattcatcgcgaacggctgccccggga	Protospacer
. .  *** ** ****************  *

32. spacer 3.14|4452947|34|NZ_CP047378|CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggggctgtggaaagggctgcgcggcggcggcgac	Protospacer
  ..*  .***** **** ************* *

33. spacer 3.14|4452947|34|NZ_CP047378|CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 11, identity: 0.676

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggcccgggaaaaacgggttcgcggcggcggcttc	Protospacer
    *.  ..****** ************** **

34. spacer 3.17|4453130|34|NZ_CP047378|CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

tcggcatagccaggctgatccggcgacggcctta	CRISPR spacer
gagcagcagaccggctgatccggcgacggccccg	Protospacer
  *  ..** * *******************...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

315647 : 366832

Stx2-converting_phage(38.6%)

tail,capsid,integrase,head,holin,tRNA,terminase

attL 352746:352761|attR 367429:367444

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106485580.1\|315647_315770_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_000458584.1\|316005_316578_+	SocA family protein	NA	NA	NA	NA
WP_014640052.1\|316607_316994_+	hypothetical protein	NA	NA	NA	NA
WP_000390073.1\|317033_317207_+	hypothetical protein	K7PJQ2	Enterobacteria_phage	6.4e-22	94.7
WP_001093919.1\|317254_317536_-	hypothetical protein	K7PGU0	Enterobacteria_phage	2.2e-43	96.8
WP_001061338.1\|317572_318145_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	5.1e-108	98.4
WP_000628776.1\|318144_318711_-	DUF551 domain-containing protein	G9L6G3	Escherichia_phage	4.0e-97	92.5
WP_000192143.1\|319224_319773_-	ead/Ea22-like family protein	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	8.5e-60	95.1
WP_001450018.1\|319769_319979_-	hypothetical protein	A0A0F6TK62	Escherichia_coli_O157_typing_phage	8.8e-34	100.0
WP_001242710.1\|319990_320602_-	hypothetical protein	A0A0P0ZFU9	Escherichia_phage	5.7e-57	74.7
WP_000008177.1\|320592_321129_-	5'-deoxynucleotidase	A5LH62	Enterobacteria_phage	9.0e-99	98.3
WP_000775327.1\|321219_322137_-	recombination-associated protein RdgC	A0A1W6JP69	Morganella_phage	3.0e-49	37.9
WP_000981537.1\|322577_323231_-	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	5.7e-71	60.8
WP_001231956.1\|323326_323524_+	hypothetical protein	K7PHB1	Enterobacterial_phage	1.1e-14	56.9
WP_000514174.1\|323551_324136_+	hypothetical protein	A0A1C9II13	Salmonella_phage	5.5e-57	60.9
WP_167582530.1\|324132_325284_+	peptidase	A0A0P0ZE80	Stx2-converting_phage	3.7e-182	86.2
WP_000620696.1\|325280_325505_+	hypothetical protein	A5LH70	Enterobacteria_phage	5.7e-39	100.0
WP_167582533.1\|325501_326494_+	hypothetical protein	U5P0A0	Shigella_phage	3.6e-93	97.0
WP_167582536.1\|326490_326985_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	5.2e-85	96.9
WP_001343335.1\|326984_327638_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	9.6e-127	99.1
WP_000210155.1\|327634_327961_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	7.8e-53	98.1
WP_021574731.1\|327957_328347_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	3.5e-68	99.2
WP_001061444.1\|328366_329176_+	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.8e-151	100.0
WP_001433852.1\|329183_330173_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.9e-195	99.7
WP_001047110.1\|330186_330939_+	antitermination protein	K7PGU5	Enterobacteria_phage	5.3e-137	99.2
WP_000917724.1\|331192_331396_+	hypothetical protein	A0A291AWX6	Escherichia_phage	6.1e-32	100.0
WP_167582539.1\|331546_332596_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.3e-186	89.6
WP_021503123.1\|332973_333402_+	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	8.9e-65	98.5
WP_053890177.1\|333987_335838_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.7
WP_024180155.1\|336276_336492_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	1.3e-32	97.2
WP_167582988.1\|336496_336841_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.4e-57	98.2
WP_032343426.1\|336891_337425_+	lysozyme	B6DZ92	Enterobacteria_phage	7.4e-101	97.7
WP_001056806.1\|337695_338265_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539792.1\|338264_338411_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_012816791.1\|338638_338824_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000095736.1\|339248_339476_-	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_000279796.1\|339517_339883_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	3.1e-66	100.0
WP_000958380.1\|340173_340737_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.1e-89	100.0
WP_052925445.1\|340733_342395_+\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	99.5
WP_167582541.1\|342458_344396_+\|capsid	phage major capsid protein	A0A0P0ZAJ3	Stx2-converting_phage	0.0e+00	99.2
WP_001063025.1\|344440_344662_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000125984.1\|347188_347515_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001007905.1\|347525_347876_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573374.1\|347872_348319_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|348315_348660_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275471.1\|348725_349442_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	3.9e-129	99.6
WP_001030063.1\|349447_349822_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001453698.1\|349917_350127_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_000212821.1\|350178_353421_+\|tail	phage tail tape measure protein	B6ETF7	Enterobacteria_phage	0.0e+00	98.0
352746:352761	attL	NA	NA	NA	NA
WP_000807964.1\|353413_353755_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_167582544.1\|353754_354453_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	7.6e-130	97.0
WP_167582548.1\|354463_355207_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	6.1e-146	96.4
WP_123007876.1\|355152_355785_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.6e-97	88.9
WP_167582551.1\|356023_359500_+	host specificity protein J	Q6H9T2	Enterobacteria_phage	0.0e+00	96.4
WP_024184441.1\|359568_360192_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	2.7e-70	61.8
WP_000279017.1\|360256_361570_+\|tail	tail fiber protein	A0A0P0ZD68	Stx2-converting_phage	7.4e-78	98.9
WP_001023380.1\|361571_361841_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	7.3e-41	94.4
WP_000938125.1\|362295_363657_-	hypothetical protein	Q9MBM1	Phage_Gifsy-1	4.5e-54	30.1
WP_001217539.1\|364298_364547_-	DinI family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_000332258.1\|364608_365706_-\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	8.1e-211	99.2
WP_072127977.1\|365794_366832_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
367429:367444	attR	NA	NA	NA	NA

DBSCAN-SWA_2

448848 : 519682

Escherichia_phage(20.0%)

integrase,transposase,tRNA

attL 496087:496101|attR 522429:522443

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085949012.1\|448848_449542_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_000398619.1\|449792_450089_+	type V toxin-antitoxin system endoribonuclease antitoxin GhoS	NA	NA	NA	NA
WP_001173343.1\|450116_450290_+	type V toxin-antitoxin system toxin GhoT	NA	NA	NA	NA
WP_096317672.1\|450408_451926_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.7e-87	38.0
WP_000856834.1\|452162_453620_-	dipeptide/tripeptide permease DtpC	A0A0P0IY73	Acinetobacter_phage	1.8e-48	29.6
WP_085949012.1\|455480_456174_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_000092909.1\|456679_458014_-	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001187182.1\|458379_459918_-	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA
WP_096071306.1\|460769_461931_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.2e-51	40.6
WP_000491535.1\|462041_462620_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	8.6e-79	78.1
WP_106505230.1\|462825_463644_-	YjiK family protein	NA	NA	NA	NA
WP_000606968.1\|463790_464936_-	hypothetical protein	NA	NA	NA	NA
WP_001365456.1\|466143_466515_+	type III secretion system LEE master regulator Ler	NA	NA	NA	NA
WP_000628726.1\|466529_466748_+	YscE family type III secretion system co-chaperone EscE	NA	NA	NA	NA
WP_000084152.1\|466760_467075_+	type III secretion system filament chaperone	NA	NA	NA	NA
WP_000153999.1\|467071_467671_+	hypothetical protein	NA	NA	NA	NA
WP_000780744.1\|467657_468311_+	hypothetical protein	NA	NA	NA	NA
WP_001299990.1\|468315_468969_+	type III secretion system LEE export apparatus protein EscR	NA	NA	NA	NA
WP_000447503.1\|468968_469238_+	type III secretion system LEE export apparatus protein EscS	NA	NA	NA	NA
WP_001002808.1\|469237_470014_+	type III secretion system LEE export apparatus protein EscT	NA	NA	NA	NA
WP_001291687.1\|470006_471044_+	type III secretion system LEE export apparatus switch protein EscU	NA	NA	NA	NA
WP_001342442.1\|471040_471499_-	type III secretion system LEE muramidase EtgA	NA	NA	NA	NA
WP_000605359.1\|471695_472052_+	nucleoside transporter	NA	NA	NA	NA
WP_167582557.1\|472126_472540_+	type III secretion system LEE transcriptional regulator GrlA	NA	NA	NA	NA
WP_000087469.1\|472924_473380_-	SycD/LcrH family type III secretion system chaperone CesD	NA	NA	NA	NA
WP_000723928.1\|473393_474932_-	type III secretion system LEE outer membrane ring protein EscC	D0U184	Enterobacteria_phage	2.0e-10	28.9
WP_001063688.1\|474931_475387_-	hypothetical protein	NA	NA	NA	NA
WP_001233824.1\|475392_475965_-	type III secretion system LEE inner membrane ring protein EscJ	NA	NA	NA	NA
WP_001059795.1\|475966_476344_-	type III secretion system inner rod subunit SctI	NA	NA	NA	NA
WP_096245887.1\|476427_476730_-	type III secretion system protein SepZ	NA	NA	NA	NA
WP_001050414.1\|476913_477267_+	type III secretion system LEE chaperone CesL	NA	NA	NA	NA
WP_001037820.1\|477263_479291_+	type III secretion system LEE export apparatus protein EscV	NA	NA	NA	NA
WP_000599711.1\|479274_480615_+	type III secretion system LEE ATPase EscN	NA	NA	NA	NA
WP_001062953.1\|480674_480995_+	hypothetical protein	NA	NA	NA	NA
WP_001443671.1\|480987_481404_+	DUF1106 domain-containing protein	NA	NA	NA	NA
WP_001050796.1\|481366_482284_+	type III secretion system protein SepQ	NA	NA	NA	NA
WP_001360071.1\|482314_482830_+	hypothetical protein	NA	NA	NA	NA
WP_001005230.1\|483048_483408_-	Tir chaperone family protein	NA	NA	NA	NA
WP_000492643.1\|483658_484270_+	hypothetical protein	NA	NA	NA	NA
WP_001121330.1\|484716_486333_+	type III secretion system LEE translocated intimin receptor Tir	NA	NA	NA	NA
WP_000098786.1\|486466_486937_+	type III secretion system LEE chaperone CesT	NA	NA	NA	NA
WP_024226406.1\|486997_489817_+	intimin type beta	NA	NA	NA	NA
WP_000953242.1\|490031_491252_-	type III secretion system LEE inner membrane ring protein EscD	NA	NA	NA	NA
WP_167582560.1\|491394_492450_+	type III secretion system LEE gatekeeper SepL	NA	NA	NA	NA
WP_000381555.1\|492507_493086_+	type III secretion system LEE translocon filament protein EspA	NA	NA	NA	NA
WP_000935768.1\|493098_494241_+	type III secretion system translocon subunit SctE	NA	NA	NA	NA
WP_001092012.1\|494261_495206_+	type III secretion system LEE translocon pore-forming subunit EspB	NA	NA	NA	NA
WP_000228587.1\|495212_495620_+	LcrR family type III secretion system chaperone CesD2	NA	NA	NA	NA
WP_001053840.1\|495656_495878_+	type III secretion system LEE needle filament protein EscF	NA	NA	NA	NA
WP_000245867.1\|495883_496162_+	EscG/YscG/SsaH family type III secretion system needle protein co-chaperone	NA	NA	NA	NA
496087:496101	attL	NA	NA	NA	NA
WP_001443729.1\|496377_497001_+	type III secretion system LEE effector EspF	NA	NA	NA	NA
WP_106485591.1\|497931_507603_-	lymphostatin Efa1/LifA	NA	NA	NA	NA
WP_000953025.1\|510203_511193_-	type III secretion system effector arginine glycosyltransferase NleB	Q8HAB2	Salmonella_phage	6.3e-98	58.5
WP_096306362.1\|511800_513450_-	type III secretion system effector EspL2	NA	NA	NA	NA
WP_001375513.1\|515112_516732_+\|transposase	ISL3-like element ISEc38 family transposase	NA	NA	NA	NA
WP_000704132.1\|516728_518300_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.8e-295	98.6
WP_106505214.1\|518416_519682_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	3.0e-76	38.1
522429:522443	attR	NA	NA	NA	NA

DBSCAN-SWA_3

556703 : 653487

113

Enterobacteria_phage(74.07%)

tail,capsid,integrase,protease,portal,plate,head,holin,transposase,tRNA,terminase

attL 566605:566640|attR 651361:651396

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001280349.1\|556703_557654_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001051883.1\|557739_558048_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_000460360.1\|558125_559406_+	GTPase HflX	NA	NA	NA	NA
WP_000312488.1\|559491_560751_+\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_001232412.1\|560753_561758_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_001089295.1\|561839_562037_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_000527955.1\|562140_563439_+	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001177639.1\|563643_564069_+	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000076316.1\|564107_566549_+	ribonuclease R	Q0GXV6	Lactococcus_phage	6.4e-67	33.1
566605:566640	attL	NA	NA	NA	NA
WP_001293282.1\|566728_567460_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000220137.1\|567586_567988_+	DUF2170 family protein	NA	NA	NA	NA
WP_000511955.1\|568006_568705_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_000012553.1\|568755_569415_+	YjfK family protein	NA	NA	NA	NA
WP_000547760.1\|569432_569831_+	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000101670.1\|569840_570479_+	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000943991.1\|570481_571645_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	4.9e-81	43.8
WP_096317517.1\|571728_573354_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000811566.1\|573470_573746_-\|protease	protease activator YjfN	NA	NA	NA	NA
WP_000254642.1\|573894_574224_-	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA
WP_000569731.1\|574405_575155_+	esterase	NA	NA	NA	NA
WP_000133631.1\|575151_575907_-	HTH-type transcriptional regulator UlaR	NA	NA	NA	NA
WP_001295191.1\|576014_577079_-	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_001300695.1\|577433_578831_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_000218360.1\|578846_579152_+	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
WP_000776505.1\|579161_579626_+	PTS ascorbate transporter subunit IIA	NA	NA	NA	NA
WP_000056760.1\|579639_580290_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_000949511.1\|580299_581154_+	L-ribulose-5-phosphate 3-epimerase UlaE	NA	NA	NA	NA
WP_167582565.1\|581153_581840_+	L-ribulose-5-phosphate 4-epimerase UlaF	NA	NA	NA	NA
WP_000492914.1\|581968_582244_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001216676.1\|582570_582966_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_001296681.1\|582972_583287_+	primosomal replication protein N	NA	NA	NA	NA
WP_000135199.1\|583291_583519_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_001196062.1\|583560_584010_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_001350063.1\|584080_584875_-	DUF2686 family protein	NA	NA	NA	NA
WP_072097616.1\|585314_585929_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.8e-42	59.1
WP_167582568.1\|585936_587145_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	1.1e-208	93.5
WP_001119478.1\|587279_587918_-	cell division protein YtfB	NA	NA	NA	NA
WP_000211225.1\|588136_588757_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_000228344.1\|589065_590469_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_001062220.1\|590735_591170_+	hypothetical protein	NA	NA	NA	NA
WP_001345317.1\|591268_592336_+	hypothetical protein	NA	NA	NA	NA
WP_000331456.1\|592582_593245_-	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_001296686.1\|593352_594318_-	DMT family transporter	NA	NA	NA	NA
WP_000560553.1\|594425_595286_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_000084622.1\|595374_595755_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000589460.1\|595883_597827_-	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_000886909.1\|598016_598757_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_000175289.1\|598746_599304_-	YtfJ family protein	NA	NA	NA	NA
WP_000689228.1\|599628_599835_+	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_000935042.1\|599896_601240_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001295196.1\|601562_602201_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_001269327.1\|602406_604140_+	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_000060925.1\|604136_607916_+	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_001219160.1\|607918_608260_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_000288983.1\|608435_608678_+	hypothetical protein	A0A0A7NPW2	Enterobacteria_phage	2.5e-40	100.0
WP_071533696.1\|608670_608904_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_000078920.1\|609033_609174_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
WP_167582571.1\|609365_609626_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000132818.1\|609668_610769_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.2e-206	100.0
WP_000005431.1\|610926_612111_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.1e-225	99.0
WP_000290450.1\|612110_612623_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
WP_000665314.1\|612677_613043_+\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.7e-56	98.3
WP_000333494.1\|613051_613207_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	2.0e-22	98.0
WP_000853388.1\|613193_616001_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	92.8
WP_000979954.1\|616013_616502_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.6e-86	100.0
WP_001525166.1\|616528_617128_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	9.8e-86	85.8
WP_131419410.1\|617555_617996_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	2.0e-51	66.7
WP_131419412.1\|617967_618570_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	2.3e-98	89.5
WP_167582574.1\|618569_619904_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.1e-181	69.0
WP_000071724.1\|619900_620509_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.5e-86	74.9
WP_052893181.1\|620501_621398_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.1e-152	96.6
WP_000213447.1\|621401_621752_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_167582577.1\|621748_622330_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	7.3e-102	97.4
WP_052893183.1\|622326_622962_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	2.4e-114	99.5
WP_000920593.1\|622954_623422_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	1.0e-85	99.4
WP_032083488.1\|623559_623967_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	2.0e-66	98.5
WP_000072327.1\|623963_624356_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_000104350.1\|624352_624676_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000864901.1\|624678_624879_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000063082.1\|624878_625373_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-89	99.4
WP_112924774.1\|625475_626276_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	2.1e-128	90.2
WP_113287016.1\|626321_627374_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.9e-193	97.4
WP_020218747.1\|627397_628234_-	hypothetical protein	A0A0A7NRY7	Enterobacteria_phage	3.3e-148	98.6
WP_167582580.1\|628388_630140_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.5
WP_000087812.1\|630139_631186_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
WP_001390707.1\|631673_631943_-	hypothetical protein	NA	NA	NA	NA
WP_000211267.1\|632307_632619_-	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	2.2e-41	83.5
WP_001525150.1\|632623_633583_-	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	2.4e-179	99.1
WP_000599398.1\|636489_636855_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	4.6e-62	99.2
WP_157895439.1\|636851_637472_-	hypothetical protein	S5MQL6	Escherichia_phage	1.7e-11	41.0
WP_001603062.1\|637525_638356_-\|protease	serine protease	A0A0A7NPW9	Enterobacteria_phage	8.7e-133	100.0
WP_001036809.1\|638352_638556_-	hypothetical protein	A0A0A7NQ74	Enterobacteria_phage	4.8e-29	100.0
WP_046788693.1\|638552_638867_-	ead/Ea22-like family protein	A0A0A7NRX6	Enterobacteria_phage	5.4e-51	100.0
WP_000153676.1\|638863_639109_-	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	6.7e-41	100.0
WP_001560998.1\|639105_639309_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	4.0e-31	100.0
WP_000021656.1\|639395_639509_-	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	2.5e-11	100.0
WP_000514277.1\|639505_639748_-	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000159895.1\|639759_640038_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	1.2e-43	100.0
WP_167582583.1\|640048_640399_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	2.7e-59	99.1
WP_001158283.1\|640436_640862_-	regulatory protein	A0A0A7NPS5	Enterobacteria_phage	9.1e-78	100.0
WP_021580386.1\|640970_641270_+	helix-turn-helix transcriptional regulator	A0A0A7NPW3	Enterobacteria_phage	1.2e-44	100.0
WP_001372721.1\|641336_642332_+\|integrase	tyrosine-type recombinase/integrase	A0A0A7NQ69	Enterobacteria_phage	2.4e-193	100.0
WP_096317499.1\|642622_642874_+	type II toxin-antitoxin system antitoxin ChpS	NA	NA	NA	NA
WP_000239579.1\|642867_643218_+	endoribonuclease toxin ChpB	NA	NA	NA	NA
WP_000055075.1\|643297_643828_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.2e-55	63.3
WP_000265933.1\|644137_645094_+	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_167582586.1\|645233_646736_+	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.4e-11	30.3
WP_001296689.1\|646749_647772_+	ABC transporter permease	NA	NA	NA	NA
WP_000596015.1\|647758_648754_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_000853753.1\|648786_649785_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.7e-70	42.7
WP_106505212.1\|649960_651334_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_000166267.1\|651489_652041_-	ribosome-associated protein	NA	NA	NA	NA
651361:651396	attR	NA	NA	NA	NA
WP_096245411.1\|652134_653487_+\|protease	metalloprotease PmbA	NA	NA	NA	NA

DBSCAN-SWA_4

692780 : 700351

Enterobacteria_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001084853.1\|692780_693041_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.6e-24	67.5
WP_000761643.1\|693037_693586_+	ash family protein	Q7M2A7	Enterobacteria_phage	5.9e-29	64.8
WP_001014979.1\|693585_693810_+	hypothetical protein	NA	NA	NA	NA
WP_000842358.1\|693806_694130_+	DUF5375 family protein	NA	NA	NA	NA
WP_096317502.1\|694144_696478_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	72.7
WP_000594911.1\|697383_698208_+	hypothetical protein	L7TR00	Rhizobium_phage	3.0e-16	35.5
WP_000227281.1\|698256_698829_-	hypothetical protein	Q858R9	Enterobacteria_phage	2.2e-71	69.0
WP_000747102.1\|698929_699280_+\|transposase	transposase	Q716C1	Shigella_phage	8.9e-39	97.7
WP_001254876.1\|699199_700351_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.6e-42	36.0

DBSCAN-SWA_5

704421 : 709740

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000839179.1\|704421_704826_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_106485702.1\|704822_705170_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	7.5e-62	99.1
WP_000099160.1\|705218_706757_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.9e-296	99.8
WP_096317830.1\|706753_707194_+	hypothetical protein	NA	NA	NA	NA
WP_001119729.1\|707272_707506_+	DUF905 family protein	NA	NA	NA	NA
WP_001234620.1\|707605_708424_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.0e-44	38.2
WP_000849588.1\|708478_708964_+	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.5
WP_001186774.1\|708979_709456_+	RadC family protein	NA	NA	NA	NA
WP_000692345.1\|709518_709740_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8

DBSCAN-SWA_6

1439693 : 1526438

Enterobacteria_phage(54.24%)

tail,capsid,integrase,protease,lysis,portal,head,transposase,tRNA,terminase

attL 1449854:1449900|attR 1496772:1496818

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096245584.1\|1439693_1441079_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.0e-45	34.8
WP_001143540.1\|1441114_1441636_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|1441743_1441956_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|1441957_1442824_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_096245583.1\|1443304_1443847_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988363.1\|1444066_1444759_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_096245582.1\|1444789_1447399_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_001350487.1\|1447377_1448418_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_106485595.1\|1448428_1448944_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|1448946_1449579_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
1449854:1449900	attL	NA	NA	NA	NA
WP_000051902.1\|1449913_1451077_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
WP_000488407.1\|1451275_1451554_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000763390.1\|1451601_1451820_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	4.9e-35	98.6
WP_001443983.1\|1451918_1452200_-	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000548537.1\|1452210_1452402_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_000149544.1\|1452374_1452557_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000611716.1\|1452553_1453234_-	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	3.0e-131	98.2
WP_000100847.1\|1453230_1454016_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995439.1\|1454021_1454318_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_001309317.1\|1454393_1454684_-	hypothetical protein	K7P6H3	Enterobacteria_phage	5.0e-27	83.8
WP_096317570.1\|1455150_1455471_-	hypothetical protein	NA	NA	NA	NA
WP_000066829.1\|1455606_1455870_-	hypothetical protein	A0A2H4FNC7	Salmonella_phage	4.2e-41	95.4
WP_000259990.1\|1455951_1456707_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
WP_001067458.1\|1456745_1456976_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182773.1\|1457045_1457585_+	hypothetical protein	M9NZI6	Enterobacteria_phage	2.6e-61	66.1
WP_000788789.1\|1458574_1459276_+	Replication protein P	M1FJ72	Enterobacteria_phage	3.8e-129	98.7
WP_000152742.1\|1459480_1459828_-	hypothetical protein	NA	NA	NA	NA
WP_096245851.1\|1460580_1461189_+	hypothetical protein	Q9T1Q5	Acyrthosiphon_pisum_secondary_endosymbiont_phage	4.4e-33	66.3
WP_001038620.1\|1461488_1461905_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_000520500.1\|1461883_1462285_+	hypothetical protein	NA	NA	NA	NA
WP_072097617.1\|1462408_1462510_+	hypothetical protein	NA	NA	NA	NA
WP_001053023.1\|1462506_1462962_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.1e-60	67.5
WP_000224914.1\|1462961_1463132_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_000774477.1\|1463124_1463415_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.0e-49	96.9
WP_001099712.1\|1463411_1463774_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000971074.1\|1463770_1463911_+	YlcG family protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
WP_001204791.1\|1463996_1464380_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000737278.1\|1464568_1465651_-	porin OmpD	Q1MVN1	Enterobacteria_phage	7.8e-166	80.6
WP_000839596.1\|1466239_1466455_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135274.1\|1466454_1466952_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	3.2e-90	97.0
WP_001228695.1\|1467168_1467351_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738423.1\|1467441_1467735_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001427981.1\|1468094_1468289_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.4e-27	95.3
WP_096245730.1\|1468677_1469223_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	8.9e-94	97.8
WP_167582609.1\|1469197_1471123_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
WP_000198149.1\|1471119_1471326_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001444138.1\|1471322_1472924_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	8.5e-310	99.1
WP_000123322.1\|1472904_1474224_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	9.6e-235	99.1
WP_001345004.1\|1474233_1474566_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_000063244.1\|1474621_1475647_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.8e-188	97.7
WP_000158868.1\|1475688_1476084_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000752961.1\|1476095_1476470_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	8.0e-62	99.1
WP_000985132.1\|1476460_1477039_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
WP_000683110.1\|1477035_1477431_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	2.9e-70	99.2
WP_001342267.1\|1477438_1478179_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.0e-129	98.0
WP_000479169.1\|1478194_1478617_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.1e-70	96.4
WP_000459457.1\|1478598_1479033_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_096317572.1\|1479025_1481587_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	91.4
WP_000847413.1\|1481583_1481913_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.3e-52	91.7
WP_167582612.1\|1481912_1482611_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.5e-133	98.7
WP_097412220.1\|1482616_1483360_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.5e-147	97.2
WP_000090884.1\|1483296_1483929_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	8.5e-96	99.0
WP_167582615.1\|1483989_1487403_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.4
WP_001230523.1\|1487473_1488073_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	1.8e-108	97.5
WP_096245676.1\|1488137_1491098_+	hypothetical protein	A0A2D1UII2	Escherichia_phage	3.0e-58	98.3
WP_000885574.1\|1491097_1491682_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-101	93.8
WP_000239881.1\|1491736_1492405_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_096317713.1\|1492461_1492701_+\|tail	tail assembly chaperone	K7PMH7	Enterobacteria_phage	2.0e-10	74.5
WP_085949012.1\|1492736_1493430_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_096317603.1\|1493724_1495209_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|1495395_1496349_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177453.1\|1496861_1497623_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
1496772:1496818	attR	NA	NA	NA	NA
WP_001224569.1\|1497802_1498693_-	DUF4434 family protein	NA	NA	NA	NA
WP_001375368.1\|1498693_1501666_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_096317602.1\|1501652_1503890_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000420938.1\|1504158_1505295_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_096245664.1\|1507363_1507825_-	DcrB-related protein	NA	NA	NA	NA
WP_000103161.1\|1507852_1509754_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.9e-27	25.7
WP_000253805.1\|1510490_1511939_-	Cu(+)/Ag(+) sensor histidine kinase CusS	A0A1V0SGX0	Hokovirus	3.9e-11	26.1
WP_000770953.1\|1511928_1512612_-	copper response regulator transcription factor CusR	W8CYM9	Bacillus_phage	1.0e-30	35.1
WP_000074256.1\|1512768_1514142_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC	NA	NA	NA	NA
WP_000709879.1\|1514299_1514632_+	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF	NA	NA	NA	NA
WP_000717121.1\|1514647_1515871_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB	NA	NA	NA	NA
WP_000573943.1\|1515882_1519026_+	Cu(+)/Ag(+) efflux RND transporter permease subunit CusA	S5VTK5	Leptospira_phage	5.7e-60	22.2
WP_000786320.1\|1519127_1520504_+	phenylalanine transporter	NA	NA	NA	NA
WP_096245865.1\|1520571_1521819_-	mechanosensitive ion channel YbdG	NA	NA	NA	NA
WP_000351464.1\|1521926_1522580_-	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA
WP_000360951.1\|1522673_1523042_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_000682517.1\|1523106_1523355_-	DUF1158 domain-containing protein	NA	NA	NA	NA
WP_001130618.1\|1523420_1524539_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_000956455.1\|1524980_1525133_+	type I toxin-antitoxin system toxin HokE	NA	NA	NA	NA
WP_001300563.1\|1525325_1526438_-\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1717266 : 1776375

Enterobacteria_phage(47.95%)

tail,capsid,integrase,protease,lysis,portal,head,holin,transposase,terminase

attL 1711862:1711878|attR 1763890:1763906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1711862:1711878	attL	NA	NA	NA	NA
WP_000533654.1\|1717266_1718337_-\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	5.6e-201	99.4
WP_162829242.1\|1718499_1719712_+\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_106505301.1\|1719687_1719846_-	hypothetical protein	K7PKU2	Enterobacteria_phage	3.0e-10	91.2
WP_001281774.1\|1719952_1720297_-	hypothetical protein	K7PJY7	Enterobacterial_phage	4.5e-59	98.2
WP_000545733.1\|1720325_1720493_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	100.0
WP_000002107.1\|1720565_1720850_-	ASCH domain-containing protein	A0A2D1GLL3	Escherichia_phage	1.8e-50	100.0
WP_012817743.1\|1720842_1721145_-	restriction alleviation protein, Lar family	Q716F5	Shigella_phage	9.4e-53	97.0
WP_000104414.1\|1721141_1721759_-	hypothetical protein	Q716F4	Shigella_phage	5.6e-36	64.2
WP_106505300.1\|1721742_1722318_-	ead/Ea22-like family protein	A5VWB3	Enterobacteria_phage	4.7e-45	83.6
WP_000812206.1\|1722314_1722872_-	hypothetical protein	E7C9P6	Salmonella_phage	3.2e-62	64.3
WP_001214436.1\|1722868_1723033_-	DUF2737 family protein	K7P7R0	Enterobacteria_phage	4.2e-23	98.1
WP_001111278.1\|1723043_1723337_-	DUF2856 family protein	G8C7L1	Escherichia_phage	2.5e-50	99.0
WP_000951334.1\|1723360_1723744_-	hypothetical protein	K7P6P8	Enterobacteria_phage	2.5e-66	98.4
WP_000031370.1\|1723743_1724349_-	ERF family protein	Q9MCQ9	Enterobacteria_phage	4.1e-108	100.0
WP_000010964.1\|1724450_1724609_-	hypothetical protein	A0A088CPT7	Enterobacteria_phage	3.1e-23	100.0
WP_001243354.1\|1724605_1724758_-	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	1.5e-19	98.0
WP_000638547.1\|1724742_1724874_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A5VWA4	Enterobacteria_phage	1.4e-16	100.0
WP_001341800.1\|1724898_1725759_-	hypothetical protein	K7P7J7	Enterobacteria_phage	2.4e-37	99.3
WP_000073663.1\|1726122_1726662_+	superinfection exclusion protein B	A0A192Y7Z0	Salmonella_phage	8.1e-39	44.9
WP_000088201.1\|1726685_1726958_-	hypothetical protein	A0A0N7C217	Escherichia_phage	7.4e-41	98.9
WP_000193240.1\|1727564_1727927_-	hypothetical protein	A0A1P8DTD0	Proteus_phage	6.2e-19	51.4
WP_000428099.1\|1728195_1728900_-	helix-turn-helix transcriptional regulator	A0A0P0ZE37	Stx2-converting_phage	4.3e-133	99.6
WP_000064149.1\|1729013_1729247_+	hypothetical protein	A0A0P0ZDD7	Stx2-converting_phage	2.3e-35	98.7
WP_000438538.1\|1729385_1729685_+	hypothetical protein	A0A0P0ZBJ0	Stx2-converting_phage	4.8e-49	99.0
WP_032167977.1\|1729717_1730656_+	replication protein	C1JJ53	Enterobacteria_phage	4.8e-172	99.7
WP_000788878.1\|1730652_1731354_+	Replication protein 14	K7P6G2	Enterobacteria_phage	1.7e-129	99.6
WP_000145926.1\|1731350_1731641_+	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
WP_096245823.1\|1731937_1732294_+	hypothetical protein	K7PHN9	Enterobacterial_phage	1.0e-58	96.5
WP_000814611.1\|1732265_1732676_+	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	2.1e-71	99.3
WP_001254255.1\|1732672_1732849_+	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
WP_000924601.1\|1732851_1733253_+	hypothetical protein	Q9EYC4	Enterobacteria_phage	1.4e-72	100.0
WP_001341811.1\|1733212_1733422_+	protein ninF	G9L691	Escherichia_phage	2.6e-30	97.1
WP_001003989.1\|1733414_1734137_+	DNA-binding protein	K7P6K2	Enterobacteria_phage	5.4e-131	99.6
WP_000002261.1\|1734136_1734427_+	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	2.9e-51	97.9
WP_001008193.1\|1734423_1734786_+	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	2.7e-62	99.2
WP_000994516.1\|1734782_1734971_+	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_000750155.1\|1735182_1736142_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_032160865.1\|1736480_1736603_+	YlcG family protein	NA	NA	NA	NA
WP_001097238.1\|1736617_1737307_+	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.5e-58	48.1
WP_001342988.1\|1737518_1737995_+	hypothetical protein	NA	NA	NA	NA
WP_000499454.1\|1738320_1738479_+	DUF3927 family protein	NA	NA	NA	NA
WP_167582626.1\|1738777_1740628_+	DUF1737 domain-containing protein	B6DZ89	Enterobacteria_phage	0.0e+00	96.3
WP_024164617.1\|1741066_1741282_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	98.6
WP_000075132.1\|1741281_1741779_+	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_000092318.1\|1741775_1742213_+\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	2.0e-72	100.0
WP_000881326.1\|1742362_1742980_+	hypothetical protein	A0A1R3Y613	Salmonella_virus	6.5e-93	85.9
WP_001307652.1\|1743167_1743362_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000235451.1\|1743757_1744267_+\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.2e-12	33.3
WP_009442816.1\|1744238_1746167_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.7e-262	66.4
WP_000259002.1\|1746150_1746357_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001432013.1\|1746353_1747946_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.2e-184	61.1
WP_021533011.1\|1748251_1748593_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	2.2e-58	100.0
WP_106485702.1\|1748589_1748937_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	7.5e-62	99.1
WP_167582629.1\|1748985_1750524_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-295	99.6
WP_000256818.1\|1751938_1752286_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_167582632.1\|1752343_1753372_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-115	61.0
WP_167582635.1\|1753423_1753798_+	hypothetical protein	NA	NA	NA	NA
WP_001204544.1\|1753790_1754144_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.5e-41	69.2
WP_000975037.1\|1754158_1754734_+\|tail	tail protein	A0A2R9YJK4	Escherichia_phage	7.5e-51	58.7
WP_000683071.1\|1754730_1755126_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	4.2e-61	87.0
WP_001143013.1\|1755133_1755886_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.7e-127	93.6
WP_000479083.1\|1755899_1756331_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_096306555.1\|1756357_1756771_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	7.1e-43	82.2
WP_167582638.1\|1756751_1759331_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	83.1
WP_000847304.1\|1759327_1759657_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	2.2e-55	95.4
WP_106505295.1\|1759656_1760355_+\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.0e-131	98.3
WP_001505235.1\|1760365_1761109_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	6.3e-151	100.0
WP_130069576.1\|1761054_1761687_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.6e-97	88.9
WP_162829242.1\|1761905_1763118_+\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_167582641.1\|1763246_1766726_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	88.7
1763890:1763906	attR	NA	NA	NA	NA
WP_001230435.1\|1766793_1767393_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	8.2e-109	98.0
WP_153781557.1\|1767457_1768672_+\|tail	phage tail protein	A0A0P0ZDE7	Stx2-converting_phage	1.9e-80	98.8
WP_001023459.1\|1768673_1768943_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	4.6e-43	96.6
WP_000950982.1\|1769048_1769930_+	hypothetical protein	A5LH48	Enterobacteria_phage	3.9e-147	90.4
WP_000652081.1\|1770153_1770981_+	type III secretion system effector Cif	A5LH49	Enterobacteria_phage	3.1e-154	98.2
WP_021351651.1\|1771104_1771476_-	hypothetical protein	K7PH54	Enterobacteria_phage	1.1e-58	95.1
WP_001448642.1\|1771919_1772495_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	1.6e-77	77.5
WP_001002868.1\|1772695_1773076_+	hypothetical protein	NA	NA	NA	NA
WP_000354291.1\|1773159_1773381_+	hypothetical protein	NA	NA	NA	NA
WP_096245855.1\|1773393_1774047_-	EspJ family T3SS effector ADP-ribosyltransferase	NA	NA	NA	NA
WP_000767389.1\|1774550_1775027_-	kinase inhibitor	NA	NA	NA	NA
WP_001307065.1\|1775085_1776375_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.0e-18	29.0

DBSCAN-SWA_8

1984998 : 2046620

Escherichia_phage(42.0%)

tail,capsid,integrase,protease,portal,head,holin,terminase

attL 2000079:2000138|attR 2041883:2041947

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156528.1\|1984998_1986759_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877161.1\|1986944_1987397_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750416.1\|1987471_1988512_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|1988868_1989378_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000839153.1\|1989596_1990226_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_000875023.1\|1990188_1992351_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|1992360_1992807_-	YccF domain-containing protein	NA	NA	NA	NA
WP_167582990.1\|1992929_1994984_+	DNA helicase IV	A7KV33	Bacillus_phage	7.7e-21	27.9
WP_032280666.1\|1995015_1995474_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|1995569_1996232_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665217.1\|1996404_1996818_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1996862_1997180_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116302.1\|1997237_1998428_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048244.1\|1998522_1998801_+	acylphosphatase	NA	NA	NA	NA
WP_000904442.1\|1998797_1999127_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375138.1\|1999217_1999877_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	5.2e-48	54.9
2000079:2000138	attL	NA	NA	NA	NA
WP_024227504.1\|2000284_2001304_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.7e-85	49.7
WP_000273158.1\|2001272_2001524_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_106505231.1\|2001590_2004071_-	exonuclease	A0A192Y6E0	Salmonella_phage	9.8e-63	64.1
WP_000449200.1\|2004350_2004539_-	hypothetical protein	NA	NA	NA	NA
WP_123003437.1\|2004936_2005104_+	hypothetical protein	NA	NA	NA	NA
WP_000920491.1\|2005097_2005331_+	hypothetical protein	NA	NA	NA	NA
WP_000394520.1\|2005308_2005716_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	1.0e-09	40.9
WP_059225152.1\|2005738_2005957_-	hypothetical protein	NA	NA	NA	NA
WP_072248456.1\|2006116_2006272_-	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_032322368.1\|2006683_2007085_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	1.3e-12	53.0
WP_024227557.1\|2007194_2007467_+	hypothetical protein	A0A0U2S629	Escherichia_phage	1.1e-12	46.3
WP_023307884.1\|2007450_2007876_+	hypothetical protein	NA	NA	NA	NA
WP_059225150.1\|2007897_2008863_+	hypothetical protein	U5P0A0	Shigella_phage	2.1e-53	64.9
WP_106505292.1\|2008903_2009329_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.5e-64	92.6
WP_021527610.1\|2009382_2009739_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.4e-58	99.2
WP_000935424.1\|2009785_2009998_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	2.8e-35	95.7
WP_000209148.1\|2010030_2010249_+	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	5.2e-29	91.7
WP_000208016.1\|2010523_2011393_+	DUF551 domain-containing protein	A0A1U9AJ59	Stx1_converting_phage	8.5e-123	79.2
WP_001278454.1\|2011508_2011613_+	hypothetical protein	NA	NA	NA	NA
WP_102204098.1\|2011802_2012015_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.7e-13	57.1
WP_001219082.1\|2012259_2012619_+	helix-turn-helix transcriptional regulator	L7TKV7	Pseudomonas_virus	7.1e-23	50.9
WP_000284536.1\|2012621_2013098_+	ImmA/IrrE family metallo-endopeptidase	L7THB5	Pseudomonas_virus	1.7e-16	33.3
WP_001429486.1\|2013530_2013809_+	hypothetical protein	I6PCV7	Cronobacter_phage	4.3e-12	48.4
WP_106505257.1\|2013810_2014866_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.4e-89	47.8
WP_102204096.1\|2014866_2015247_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.1e-37	65.5
WP_025237241.1\|2015243_2016065_+	hypothetical protein	K7P7B9	Enterobacteria_phage	4.1e-82	60.8
WP_000839572.1\|2016807_2017023_+\|holin	holin	M1FN85	Enterobacteria_phage	5.3e-34	98.6
WP_097430261.1\|2017027_2017342_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	7.7e-50	96.2
WP_001274714.1\|2017397_2017931_+	lysozyme	K7PLY1	Enterobacteria_phage	5.1e-102	99.4
WP_001228685.1\|2018147_2018333_+	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	6.4e-20	80.3
WP_097430260.1\|2018550_2018817_+	hypothetical protein	NA	NA	NA	NA
WP_097430259.1\|2018822_2019362_-	hypothetical protein	NA	NA	NA	NA
WP_001111090.1\|2019500_2019851_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.3e-65	98.3
WP_096924490.1\|2020000_2020483_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	3.0e-85	98.8
WP_106485614.1\|2020482_2022240_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.5
WP_048949147.1\|2022251_2022434_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	1.1e-24	96.7
WP_097409095.1\|2022433_2023675_+\|portal	phage portal protein	U5P411	Shigella_phage	4.2e-240	99.0
WP_001193633.1\|2023652_2024303_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	7.3e-119	99.5
WP_106485615.1\|2024317_2025523_+\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	2.9e-222	98.8
WP_000601355.1\|2025573_2025762_+	hypothetical protein	A0A1B5FP98	Escherichia_phage	7.2e-27	100.0
WP_050939781.1\|2025773_2026079_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	1.6e-39	92.1
WP_106485616.1\|2026087_2026426_+\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	1.1e-54	96.4
WP_000968644.1\|2026422_2026872_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	6.1e-64	81.2
WP_001406801.1\|2026868_2027213_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	3.6e-56	98.2
WP_000097530.1\|2027272_2027977_+	hypothetical protein	A0A1B5FP82	Escherichia_phage	2.5e-117	95.7
WP_000164661.1\|2027991_2028363_+\|tail	tail assembly protein	A0A1B5FP91	Escherichia_phage	6.5e-64	100.0
WP_000978931.1\|2028386_2028665_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	1.6e-43	98.9
WP_106505254.1\|2028711_2031951_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	96.6
WP_096924496.1\|2031943_2032285_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	3.5e-40	65.5
WP_054632287.1\|2032284_2032983_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	2.4e-131	97.4
WP_096924497.1\|2032987_2033731_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_096924498.1\|2033628_2034276_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.8e-110	94.9
WP_167582647.1\|2034336_2037819_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.1
WP_106485729.1\|2037886_2038486_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	8.5e-106	96.0
WP_000279018.1\|2038550_2039864_+\|tail	tail fiber protein	A0A0P0ZCC1	Stx2-converting_phage	2.8e-77	97.3
WP_001023380.1\|2039865_2040135_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	7.3e-41	94.4
WP_106485569.1\|2040276_2041152_+	secretion protein EspS	A0A0P0ZCT1	Stx2-converting_phage	8.0e-153	93.5
WP_162540430.1\|2041390_2041561_+	hypothetical protein	NA	NA	NA	NA
WP_001058323.1\|2042401_2043520_+	hydrogenase 1 small subunit	NA	NA	NA	NA
2041883:2041947	attR	NA	NA	NA	NA
WP_096317440.1\|2043516_2045310_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_167582650.1\|2045328_2046036_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003671.1\|2046032_2046620_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_9

2108670 : 2164057

Stx2-converting_phage(29.41%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998025.1\|2108670_2110203_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	7.1e-298	99.6
WP_000612591.1\|2110252_2110600_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171554.1\|2110596_2110977_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_162829242.1\|2111415_2112629_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_028913479.1\|2113681_2114287_+	conjugal transfer protein TraT	NA	NA	NA	NA
WP_001303891.1\|2114334_2114586_-	hypothetical protein	NA	NA	NA	NA
WP_001304211.1\|2114609_2114900_-	hypothetical protein	NA	NA	NA	NA
WP_000024297.1\|2115585_2115945_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000591995.1\|2116037_2117657_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_167582656.1\|2117881_2118157_-	hypothetical protein	NA	NA	NA	NA
WP_000886249.1\|2118537_2119317_+	urease accessory protein UreD	NA	NA	NA	NA
WP_000424145.1\|2119326_2119629_+	urease subunit gamma	NA	NA	NA	NA
WP_000612150.1\|2119637_2119958_+	urease subunit beta	NA	NA	NA	NA
WP_000065682.1\|2119950_2121654_+	urease subunit alpha	NA	NA	NA	NA
WP_000966485.1\|2121663_2122128_+	urease accessory protein UreE	NA	NA	NA	NA
WP_001142971.1\|2122128_2122803_+	urease accessory protein UreF	NA	NA	NA	NA
WP_001021388.1\|2122814_2123432_+	urease accessory protein UreG	NA	NA	NA	NA
WP_000803992.1\|2124642_2124906_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_001135715.1\|2125207_2125348_+	Hok/Gef family protein	G9L6L7	Escherichia_phage	2.4e-11	66.7
WP_167582659.1\|2126218_2126890_-	hypothetical protein	NA	NA	NA	NA
WP_000097913.1\|2127909_2128083_-	hypothetical protein	NA	NA	NA	NA
WP_000435663.1\|2129227_2129653_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.4e-33	73.2
WP_000624701.1\|2129649_2130000_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.1e-39	64.7
WP_000088522.1\|2130030_2131644_+\|transposase	IS66-like element IS682 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.1e-166	65.7
WP_000957249.1\|2132547_2132928_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_000042916.1\|2132914_2133244_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_001176766.1\|2133504_2133972_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_000506898.1\|2133989_2135198_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_000797372.1\|2135208_2136165_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_167582662.1\|2136164_2137244_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	6.2e-38	34.4
WP_001040056.1\|2137245_2138019_-	hypothetical protein	NA	NA	NA	NA
WP_001280118.1\|2138011_2139154_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	7.7e-31	35.4
WP_001035166.1\|2139163_2140222_-	hypothetical protein	NA	NA	NA	NA
WP_000254140.1\|2140544_2141126_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	1.7e-13	30.5
WP_001054789.1\|2141125_2142283_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_000007449.1\|2142305_2142761_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|2142783_2143824_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116680.1\|2143872_2144451_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_000301248.1\|2144519_2145095_+	TerD family protein	K4JRX3	Caulobacter_phage	2.5e-30	41.1
WP_001053349.1\|2145520_2145907_+	protein TerF	NA	NA	NA	NA
WP_001223350.1\|2146420_2148511_-	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_000477623.1\|2149963_2150182_+	hypothetical protein	NA	NA	NA	NA
WP_001310149.1\|2150815_2151151_+	hypothetical protein	NA	NA	NA	NA
WP_001004881.1\|2151931_2152126_-	hypothetical protein	NA	NA	NA	NA
WP_001299815.1\|2152177_2152357_-	hypothetical protein	NA	NA	NA	NA
WP_001303898.1\|2152445_2152718_+	hypothetical protein	NA	NA	NA	NA
WP_001340489.1\|2153001_2153217_+	hypothetical protein	NA	NA	NA	NA
WP_000958487.1\|2153282_2153480_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_096245941.1\|2154209_2155334_+	glycosyltransferase	NA	NA	NA	NA
WP_001301456.1\|2156687_2157146_-	hypothetical protein	NA	NA	NA	NA
WP_024219674.1\|2157603_2158113_+	hypothetical protein	NA	NA	NA	NA
WP_001260386.1\|2158201_2158825_+	hypothetical protein	NA	NA	NA	NA
WP_000124179.1\|2158920_2159154_+	hypothetical protein	NA	NA	NA	NA
WP_001287881.1\|2159206_2159398_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000590537.1\|2159819_2159969_+	hypothetical protein	NA	NA	NA	NA
WP_001254932.1\|2161206_2162358_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_162829242.1\|2162844_2164057_+\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0

DBSCAN-SWA_10

2284364 : 2351756

Stx2-converting_phage(40.0%)

tail,capsid,integrase,head,holin,transposase,tRNA,terminase

attL 2274102:2274118|attR 2292208:2292224

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2274102:2274118	attL	NA	NA	NA	NA
WP_052897395.1\|2284364_2285483_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	1.3e-83	44.2
WP_000003742.1\|2285451_2285721_-	excisionase	NA	NA	NA	NA
WP_106645230.1\|2285782_2288254_-	exonuclease	K7PLW7	Enterobacteria_phage	3.8e-59	60.9
WP_000199480.1\|2288349_2288538_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449172.1\|2288534_2288723_-	cell division inhibitor	NA	NA	NA	NA
WP_123004616.1\|2289123_2289288_+	hypothetical protein	NA	NA	NA	NA
WP_167582677.1\|2289291_2289510_-	hypothetical protein	NA	NA	NA	NA
WP_000379557.1\|2289669_2289825_-	DUF1391 family protein	M4QQ57	Salicola_phage	2.3e-07	53.2
WP_000948452.1\|2290143_2290620_-	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
WP_000711018.1\|2290744_2291068_+	transcriptional regulator	A0A0R6PH31	Moraxella_phage	6.2e-10	44.9
WP_000693916.1\|2291051_2291477_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095671.1\|2291499_2292462_+	DNA-binding protein	U5P0A0	Shigella_phage	2.1e-69	51.2
2292208:2292224	attR	NA	NA	NA	NA
WP_001151120.1\|2292502_2292925_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.3e-63	89.9
WP_000004322.1\|2292921_2293176_+	hypothetical protein	A0A0U2RK51	Escherichia_phage	4.8e-42	94.0
WP_001002672.1\|2293168_2293480_+	hypothetical protein	A0A0U2QV73	Escherichia_phage	1.1e-59	97.1
WP_085949012.1\|2293703_2294397_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_001204666.1\|2294559_2295138_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	2.6e-104	100.0
WP_096317682.1\|2295097_2296195_-	beta family protein	A0A0U2S621	Escherichia_phage	2.6e-209	99.2
WP_000882662.1\|2296695_2296908_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
WP_012817871.1\|2297075_2297348_+	hypothetical protein	I6PCV7	Cronobacter_phage	9.4e-12	49.2
WP_000140024.1\|2298394_2298760_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.6e-38	64.3
WP_000640017.1\|2298768_2299311_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.9e-72	72.9
WP_000917767.1\|2299542_2299740_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_048250648.1\|2299890_2300940_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	3.4e-182	88.5
WP_000562553.1\|2301738_2301870_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_000871291.1\|2302150_2302486_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_167582680.1\|2302745_2304599_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	0.0e+00	95.1
WP_000284518.1\|2304748_2304964_+\|holin	holin	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
WP_024017643.1\|2304968_2305313_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.4e-57	99.1
WP_000992033.1\|2305363_2305897_+	lysozyme	Q6H9V6	Enterobacteria_phage	8.1e-100	96.0
WP_032140280.1\|2306451_2306538_+	hypothetical protein	NA	NA	NA	NA
WP_012816791.1\|2306759_2306945_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000828072.1\|2307345_2307672_+	TonB family protein	H6WZK5	Escherichia_phage	3.4e-56	98.1
WP_000095732.1\|2307803_2308004_-	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	3.7e-29	95.5
WP_000279801.1\|2308045_2308411_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.3e-61	95.9
WP_000958360.1\|2308702_2309266_+\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	6.2e-90	99.5
WP_001399867.1\|2309262_2310924_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	99.6
WP_052908978.1\|2310987_2312925_+\|capsid	phage major capsid protein	A0A0P0ZCT9	Stx2-converting_phage	0.0e+00	99.8
WP_001063025.1\|2312969_2313191_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000125984.1\|2315717_2316044_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001007905.1\|2316054_2316405_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573374.1\|2316401_2316848_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|2316844_2317189_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275471.1\|2317254_2317971_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	3.9e-129	99.6
WP_000099160.1\|2318011_2319550_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.9e-296	99.8
WP_106485702.1\|2319598_2319946_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	7.5e-62	99.1
WP_000839179.1\|2319942_2320347_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_001030063.1\|2320438_2320813_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001453698.1\|2320908_2321118_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_032316741.1\|2321169_2324436_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	78.9
WP_000807964.1\|2324428_2324770_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_001152217.1\|2324769_2325468_+\|tail	phage minor tail protein L	A0A0N7KZH0	Stx2-converting_phage	2.8e-132	99.6
WP_000194790.1\|2325473_2326217_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	8.3e-151	99.6
WP_146681451.1\|2326162_2326795_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.4e-103	92.3
WP_000514715.1\|2327137_2329588_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	95.0
WP_000839179.1\|2329665_2330070_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_106485702.1\|2330066_2330414_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	7.5e-62	99.1
WP_000099160.1\|2330462_2332001_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.9e-296	99.8
WP_106485674.1\|2332023_2333073_+	DUF1983 domain-containing protein	Q9EYE7	Enterobacteria_phage	5.0e-194	99.7
WP_096939759.1\|2333140_2333740_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.2e-107	96.5
WP_167582683.1\|2333891_2335205_+\|tail	phage tail protein	A0A0P0ZD68	Stx2-converting_phage	4.5e-75	98.2
WP_001023356.1\|2335206_2335476_+\|tail	phage tail protein	A0A2R2Z347	Escherichia_phage	2.4e-44	98.9
WP_096071306.1\|2337621_2338783_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.2e-51	40.6
WP_106409364.1\|2340684_2340807_+	hypothetical protein	Q687E5	Enterobacteria_phage	3.8e-05	91.3
WP_000950979.1\|2340913_2341825_+	type III secretion system effector kinase NleH1-2	A5LH48	Enterobacteria_phage	3.0e-134	82.2
WP_000938103.1\|2341890_2342460_+	T3SS effector caspase inhibitor NleF	NA	NA	NA	NA
WP_001303943.1\|2343626_2343905_-	hypothetical protein	NA	NA	NA	NA
WP_001414184.1\|2344332_2344479_+	hypothetical protein	NA	NA	NA	NA
WP_001303944.1\|2344615_2345263_-	T3SS effector E3 ubiquitin-protein ligase NleG	B6ETE1	Enterobacteria_phage	1.6e-41	41.1
WP_001144877.1\|2345446_2346037_+	T3SS effector guanine nucleotide exchange factor EspM1	NA	NA	NA	NA
WP_001345079.1\|2347543_2348194_+	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	6.6e-27	32.4
WP_000147167.1\|2348799_2349018_-	hypothetical protein	NA	NA	NA	NA
WP_000891620.1\|2349107_2349674_-	hydrolase	NA	NA	NA	NA
WP_001258662.1\|2349983_2351756_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_11

2393341 : 2481154

104

Escherichia_phage(36.76%)

tail,capsid,integrase,protease,head,holin,tRNA,terminase

attL 2388750:2388766|attR 2408584:2408600

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2388750:2388766	attL	NA	NA	NA	NA
WP_000916763.1\|2393341_2393572_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
WP_096245560.1\|2393710_2394085_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000879280.1\|2394088_2394961_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000976492.1\|2394973_2395315_+	YebY family protein	NA	NA	NA	NA
WP_001189085.1\|2395707_2396784_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	9.0e-98	51.7
WP_097412098.1\|2396749_2397031_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.3e-11	42.4
WP_024177035.1\|2397137_2397326_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	3.9e-17	95.7
WP_010989194.1\|2397318_2397513_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	4.5e-32	98.4
WP_001004413.1\|2397576_2398629_-	recombinase RecT	A0A0U2S5Y9	Escherichia_phage	2.3e-114	62.5
WP_167582685.1\|2398640_2401790_-	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	74.2
WP_044805262.1\|2401890_2402166_-	hypothetical protein	A0A0U2QW85	Escherichia_phage	4.4e-41	93.4
WP_000358365.1\|2402240_2402411_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	2.0e-15	67.9
WP_000560219.1\|2402410_2402632_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	1.5e-36	95.9
WP_000379547.1\|2403052_2403205_-	DUF1391 family protein	M4QQ57	Salicola_phage	1.0e-07	55.3
WP_000410105.1\|2403511_2403931_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	3.1e-14	60.6
WP_001033914.1\|2404027_2404270_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	2.3e-17	62.1
WP_044805260.1\|2404266_2404689_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	4.5e-69	93.6
WP_153781624.1\|2404766_2405561_+	hypothetical protein	G9L6A8	Escherichia_phage	4.4e-41	65.2
WP_054421928.1\|2405567_2406314_+	ATP-binding protein	V5UQI5	Shigella_phage	9.9e-112	79.7
WP_096317508.1\|2406336_2407107_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.9e-87	66.8
WP_044805255.1\|2407122_2407545_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.1e-64	92.1
WP_000004203.1\|2407541_2408015_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.1e-66	76.8
WP_001224676.1\|2408159_2408333_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.2e-23	94.7
WP_000753056.1\|2408334_2408511_+	hypothetical protein	A0A2R2X2A8	Escherichia_phage	3.7e-25	91.4
WP_001289349.1\|2408507_2409455_+	ead/Ea22-like family protein	A0A0P0ZE96	Stx2-converting_phage	1.2e-178	97.1
2408584:2408600	attR	NA	NA	NA	NA
WP_096317509.1\|2409968_2410478_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	2.1e-49	82.1
WP_000610656.1\|2410474_2410855_+	DUF551 domain-containing protein	Q08J61	Stx2-converting_phage	9.6e-71	100.0
WP_000426669.1\|2410854_2411250_+	hypothetical protein	A0A1I9LJU8	Stx_converting_phage	4.4e-66	98.5
WP_000200358.1\|2411370_2412144_-	KilA-N domain-containing protein	A0A1L2BWW1	Bacteriophage	9.6e-09	42.6
WP_001585819.1\|2412668_2412821_+	Hok/Gef family protein	NA	NA	NA	NA
WP_001337241.1\|2413056_2413308_+	hypothetical protein	NA	NA	NA	NA
WP_096317510.1\|2413379_2413979_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	7.5e-102	89.9
WP_000228038.1\|2413978_2414269_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-47	89.6
WP_096317511.1\|2414265_2414820_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.1e-70	71.0
WP_000211416.1\|2415093_2415675_+	ORF6N domain-containing protein	Q8VNP5	Enterobacteria_phage	8.7e-63	97.6
WP_001369585.1\|2415917_2416115_+	hypothetical protein	S5MQK8	Escherichia_phage	2.0e-27	96.9
WP_096317512.1\|2416249_2416963_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001434745.1\|2417414_2417843_+	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	2.6e-64	98.5
WP_096317514.1\|2418320_2420258_+	SASA family carbohydrate esterase	A0A0P0ZDW4	Stx2-converting_phage	0.0e+00	96.3
WP_000143458.1\|2420395_2420575_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|2420615_2420861_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_001072901.1\|2420938_2421154_+\|holin	holin	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_000087714.1\|2421158_2421692_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.0e-102	99.4
WP_001056883.1\|2421966_2422536_+	hypothetical protein	A0A2R2Z339	Escherichia_phage	1.5e-104	99.5
WP_000455406.1\|2422535_2422685_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_001208680.1\|2422912_2423098_+	membrane protein	A0A1U9AJA4	Stx1_converting_phage	1.7e-20	80.3
WP_001302717.1\|2423623_2423938_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_096317800.1\|2424019_2424244_-	YlcI/YnfO family protein	A0A0P0ZCG8	Stx2-converting_phage	2.3e-19	76.1
WP_000279796.1\|2424285_2424651_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	3.1e-66	100.0
WP_000958380.1\|2424941_2425505_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.1e-89	100.0
WP_052925445.1\|2425501_2427163_+\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	99.5
WP_167582541.1\|2427226_2429164_+\|capsid	phage major capsid protein	A0A0P0ZAJ3	Stx2-converting_phage	0.0e+00	99.2
WP_001063025.1\|2429208_2429430_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000125984.1\|2431956_2432283_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001007905.1\|2432293_2432644_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573374.1\|2432640_2433087_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|2433083_2433428_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275471.1\|2433493_2434210_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	3.9e-129	99.6
WP_001030063.1\|2434215_2434590_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001453698.1\|2434685_2434895_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_000212821.1\|2434946_2438189_+\|tail	phage tail tape measure protein	B6ETF7	Enterobacteria_phage	0.0e+00	98.0
WP_000807964.1\|2438181_2438523_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_096954638.1\|2438522_2439221_+\|tail	phage minor tail protein L	A0A0P0ZD82	Stx2-converting_phage	2.8e-132	99.1
WP_167582548.1\|2439231_2439975_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	6.1e-146	96.4
WP_123007876.1\|2439920_2440553_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.6e-97	88.9
WP_167582688.1\|2440791_2444268_+	host specificity protein J	Q6H9T2	Enterobacteria_phage	0.0e+00	97.0
WP_167582691.1\|2444336_2444960_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	1.3e-69	60.9
WP_167582694.1\|2445024_2446338_+\|tail	phage tail protein	Q9EYE8	Enterobacteria_phage	3.1e-76	98.6
WP_053921583.1\|2446339_2446609_+\|tail	phage tail protein	H6WZN0	Escherichia_phage	9.3e-44	97.8
WP_122988840.1\|2446719_2446797_+	hypothetical protein	NA	NA	NA	NA
WP_122993102.1\|2447011_2448025_+	peptidase M85	NA	NA	NA	NA
WP_167582697.1\|2448757_2449414_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	1.0e-56	50.2
WP_001296140.1\|2449414_2449606_-	YebW family protein	NA	NA	NA	NA
WP_001295499.1\|2449710_2449947_-	DUF1480 family protein	NA	NA	NA	NA
WP_096317597.1\|2450064_2451504_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_001299674.1\|2451583_2454217_-	lipid-binding membrane homeostasis protein YebT	NA	NA	NA	NA
WP_001207284.1\|2454185_2455469_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_001043882.1\|2455598_2456096_+	L-methionine (R)-S-oxide reductase	NA	NA	NA	NA
WP_000431370.1\|2456192_2456891_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_001315679.1\|2456910_2458959_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	6.8e-86	33.5
WP_000984517.1\|2459150_2460032_+\|protease	protease HtpX	NA	NA	NA	NA
WP_001127210.1\|2460077_2461451_-	MFS transporter	NA	NA	NA	NA
WP_001262174.1\|2461627_2462419_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_001211011.1\|2462561_2462801_-	hypothetical protein	NA	NA	NA	NA
WP_000714550.1\|2462959_2463103_+	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
WP_001006866.1\|2463177_2463465_+	hypothetical protein	NA	NA	NA	NA
WP_001295496.1\|2464133_2464277_+	YobF family protein	NA	NA	NA	NA
WP_001062678.1\|2464289_2464499_+	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
WP_000010107.1\|2464664_2465474_+	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
WP_033551495.1\|2465470_2466037_-	manganese efflux pump MntP	NA	NA	NA	NA
WP_000156255.1\|2466465_2466924_-	DUF986 domain-containing protein	NA	NA	NA	NA
WP_000228655.1\|2466978_2467830_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
WP_096854310.1\|2467842_2468643_-	PTS mannose transporter subunit IIC	NA	NA	NA	NA
WP_000150551.1\|2468705_2469677_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_000394983.1\|2470139_2471696_+	CNNM family cation transport protein YoaE	A0A0R6PEZ3	Moraxella_phage	1.7e-41	45.4
WP_001295494.1\|2471699_2473298_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_000624298.1\|2473428_2474793_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_000456725.1\|2474976_2475555_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_000854972.1\|2475558_2476920_-	aminodeoxychorismate synthase component 1	S4VT78	Pandoravirus	3.4e-41	33.4
WP_000457334.1\|2476993_2477173_+	YoaH family protein	NA	NA	NA	NA
WP_001307845.1\|2477292_2477652_-	DUF1889 family protein	NA	NA	NA	NA
WP_001295493.1\|2478014_2478359_-	RidA family protein	NA	NA	NA	NA
WP_000128847.1\|2478490_2480401_+	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	4.5e-92	31.9
WP_001221003.1\|2480458_2481154_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA

DBSCAN-SWA_12

2649597 : 2783611

147

Enterobacteria_phage(29.33%)

tail,capsid,integrase,protease,portal,head,holin,transposase,tRNA,terminase

attL 2715349:2715365|attR 2731228:2731244

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295400.1\|2649597_2650872_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	8.8e-84	41.4
WP_000789751.1\|2650933_2651794_+	pyridoxal kinase PdxY	NA	NA	NA	NA
WP_000765749.1\|2651837_2652443_-	glutathione transferase GstA	NA	NA	NA	NA
WP_000100931.1\|2652548_2654051_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_001030346.1\|2654661_2655297_-	endonuclease III	NA	NA	NA	NA
WP_001289657.1\|2655296_2655992_-	electron transport complex subunit RsxE	NA	NA	NA	NA
WP_000920784.1\|2655995_2656616_-	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_000231922.1\|2656619_2657678_-	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_000915761.1\|2657678_2659901_-	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_000991805.1\|2659893_2660472_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_000133188.1\|2660471_2661053_-	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_096317375.1\|2661129_2661570_-	DUF2569 domain-containing protein	NA	NA	NA	NA
WP_000217950.1\|2661655_2661871_-	transcription modulator YdgT	NA	NA	NA	NA
WP_001300888.1\|2662143_2662269_-	division septum protein Blr	NA	NA	NA	NA
WP_001282516.1\|2662511_2663552_+	oxidoreductase	NA	NA	NA	NA
WP_000567490.1\|2663586_2664588_-	adenosine deaminase	NA	NA	NA	NA
WP_000459381.1\|2664691_2665864_-	bifunctional maltose regulon transcriptional repressor/cystathionine beta-lyase MalY	NA	NA	NA	NA
WP_000125607.1\|2665873_2667466_-	PTS maltose transporter subunit IICB	NA	NA	NA	NA
WP_016239542.1\|2667640_2668669_+	mal regulon transcriptional regulator MalI	NA	NA	NA	NA
WP_000483353.1\|2668780_2669548_+	7-alpha-hydroxysteroid dehydrogenase	NA	NA	NA	NA
WP_001342191.1\|2669768_2670359_+	DNA-binding transcriptional regulator UidR	NA	NA	NA	NA
WP_000945880.1\|2670747_2672559_+	beta-glucuronidase	B9U1V4	Vaccinia_virus	0.0e+00	99.8
WP_001075858.1\|2672555_2673929_+	glucuronide transporter	NA	NA	NA	NA
WP_032331778.1\|2673967_2675233_+	glucuronide uptake porin UidC	NA	NA	NA	NA
WP_001043342.1\|2675277_2676786_-	YdgA family protein	NA	NA	NA	NA
WP_001170683.1\|2676886_2678062_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_000066628.1\|2678260_2679907_+	class I fumarate hydratase	NA	NA	NA	NA
WP_001099108.1\|2680049_2681453_+	class II fumarate hydratase	NA	NA	NA	NA
WP_000135186.1\|2681449_2682379_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_167582714.1\|2682454_2683756_-	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	7.2e-17	23.9
WP_001092519.1\|2683759_2684479_-	two-component system response regulator RstA	NA	NA	NA	NA
WP_000524868.1\|2684607_2684943_+	GlpM family protein	NA	NA	NA	NA
WP_000513673.1\|2684939_2685662_-	dihydromonapterin reductase	NA	NA	NA	NA
WP_000412379.1\|2685698_2687081_-	amino acid permease	NA	NA	NA	NA
WP_000769322.1\|2687266_2688211_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001295398.1\|2688734_2690267_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_000014036.1\|2690277_2691666_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_033809557.1\|2692772_2694002_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	6.4e-132	55.9
WP_000953271.1\|2694376_2694565_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	5.9e-13	64.2
WP_000190566.1\|2695060_2695240_-	hypothetical protein	NA	NA	NA	NA
WP_047377376.1\|2695424_2695625_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_001488088.1\|2695614_2695854_+	hypothetical protein	NA	NA	NA	NA
WP_001737184.1\|2695846_2696068_+	hypothetical protein	NA	NA	NA	NA
WP_001204996.1\|2696069_2696303_+	hypothetical protein	NA	NA	NA	NA
WP_000770163.1\|2696308_2696608_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_167582717.1\|2696604_2698359_+	DNA primase	Q7M2A8	Enterobacteria_phage	7.1e-92	40.0
WP_000557476.1\|2698647_2698926_+	hypothetical protein	NA	NA	NA	NA
WP_024215644.1\|2698922_2699333_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000233299.1\|2699343_2699616_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001132080.1\|2699740_2699965_+	hypothetical protein	NA	NA	NA	NA
WP_001137346.1\|2700256_2701414_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	4.8e-137	64.6
WP_000504051.1\|2701453_2702026_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	5.5e-62	64.1
WP_000267615.1\|2702027_2703239_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	8.7e-190	79.7
WP_001020670.1\|2703235_2703574_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.7e-31	53.6
WP_000134114.1\|2703570_2703867_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	2.4e-32	65.3
WP_001145904.1\|2703866_2704307_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.9e-62	72.6
WP_000174068.1\|2704290_2704473_+	hypothetical protein	NA	NA	NA	NA
WP_000113645.1\|2704595_2704952_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_001560954.1\|2704935_2706597_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	8.9e-278	81.7
WP_000133423.1\|2706610_2706892_+	hypothetical protein	NA	NA	NA	NA
WP_000276149.1\|2708166_2708532_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_000046661.1\|2708518_2708848_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_001260840.1\|2708886_2709708_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|2709807_2709891_-	hypothetical protein	NA	NA	NA	NA
WP_000743951.1\|2709983_2710319_-	acid shock protein	NA	NA	NA	NA
WP_000091840.1\|2710715_2711969_-	MFS transporter	NA	NA	NA	NA
WP_001019545.1\|2712075_2712969_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225276.1\|2713103_2714324_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919226.1\|2714448_2715144_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_001315626.1\|2715096_2716389_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
2715349:2715365	attL	NA	NA	NA	NA
WP_000148710.1\|2716547_2717162_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_000526492.1\|2717204_2718059_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213028.1\|2718060_2718678_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_001342196.1\|2718688_2721112_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.2e-208	48.6
WP_001307224.1\|2723796_2724102_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001321287.1\|2724209_2724920_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138581.1\|2724922_2725483_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705211.1\|2725517_2725859_-	DUF1283 family protein	NA	NA	NA	NA
WP_000598292.1\|2725993_2726320_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_001295394.1\|2726525_2727740_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000836079.1\|2727751_2728771_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	9.7e-17	25.9
WP_072095801.1\|2728828_2728939_+	transporter	NA	NA	NA	NA
WP_167582720.1\|2728958_2730254_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.6e-154	61.8
WP_000005551.1\|2730273_2730525_-	excisionase family protein	S4TND0	Salmonella_phage	2.9e-15	50.0
WP_162829242.1\|2731855_2733069_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
2731228:2731244	attR	NA	NA	NA	NA
WP_000449175.1\|2734633_2734822_-	cell division inhibitor	NA	NA	NA	NA
WP_001133037.1\|2735385_2735595_+	hypothetical protein	NA	NA	NA	NA
WP_000394548.1\|2735595_2736234_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
WP_000379563.1\|2736245_2736398_-	DUF1391 family protein	M4QQ57	Salicola_phage	1.0e-07	55.3
WP_001003379.1\|2736587_2736995_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-24	45.4
WP_000476986.1\|2737072_2737300_+	transcriptional regulator	NA	NA	NA	NA
WP_159120643.1\|2737283_2737835_+	hypothetical protein	NA	NA	NA	NA
WP_000020570.1\|2737806_2738847_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.8e-90	86.7
WP_157837342.1\|2738758_2739301_+	replication protein	A0A0U2JGJ0	Escherichia_phage	2.9e-84	97.4
WP_024224419.1\|2739335_2740106_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	4.2e-81	65.6
WP_001118160.1\|2740121_2740517_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.0e-30	51.4
WP_106505297.1\|2740574_2740931_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.1e-55	94.9
WP_000063625.1\|2740979_2741192_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	1.4e-31	87.1
WP_000555106.1\|2741392_2742106_+	DUF551 domain-containing protein	A0A0P0ZD75	Stx2-converting_phage	1.2e-34	86.1
WP_001278450.1\|2742221_2742326_+	hypothetical protein	NA	NA	NA	NA
WP_000967408.1\|2742514_2742727_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.1e-26	94.3
WP_077625879.1\|2742944_2743205_+	hypothetical protein	NA	NA	NA	NA
WP_032156506.1\|2743274_2743553_+	hypothetical protein	I6PCV7	Cronobacter_phage	6.3e-11	46.9
WP_167582723.1\|2743554_2744604_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.5e-108	53.4
WP_096317734.1\|2744616_2744976_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.4e-34	62.8
WP_001064906.1\|2744972_2745662_+	antiterminator	I6PDF8	Cronobacter_phage	5.5e-56	48.1
WP_000917733.1\|2745874_2746072_+	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	96.9
WP_000483509.1\|2746224_2747283_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	2.6e-206	98.6
WP_032362312.1\|2747926_2749780_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	99.0
WP_000284516.1\|2749929_2750145_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	97.2
WP_096317795.1\|2750148_2750706_+	hypothetical protein	Q08JA0	Stx2-converting_phage	1.2e-50	82.1
WP_052915455.1\|2750742_2751276_+	lysozyme	Q6H9V6	Enterobacteria_phage	8.7e-102	97.2
WP_072095843.1\|2751432_2751615_+	hypothetical protein	NA	NA	NA	NA
WP_001280927.1\|2751627_2751759_+	hypothetical protein	A0A0P0ZG36	Escherichia_phage	9.7e-07	76.7
WP_071974579.1\|2751981_2752188_+	hypothetical protein	H6WRZ6	Salmonella_phage	4.6e-11	63.2
WP_000735655.1\|2752252_2752477_+	hypothetical protein	NA	NA	NA	NA
WP_032211162.1\|2752964_2753471_+	DNA-packaging protein	O64316	Escherichia_phage	1.9e-34	49.4
WP_106485649.1\|2753442_2755371_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.0e-261	65.9
WP_000259002.1\|2755354_2755561_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_106485648.1\|2755557_2757150_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.2e-183	60.7
WP_024226418.1\|2757139_2758645_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.7e-100	54.0
WP_000256818.1\|2758681_2759029_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_000522623.1\|2759086_2760115_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	5.0e-114	61.9
WP_000201512.1\|2760166_2760550_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_001204558.1\|2760542_2760896_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.9e-41	69.2
WP_106505273.1\|2760910_2761489_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	99.0
WP_000683137.1\|2761485_2761881_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	3.7e-65	92.4
WP_000235101.1\|2761888_2762641_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	3.2e-134	98.8
WP_000479045.1\|2762654_2763077_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	1.7e-71	98.6
WP_000533440.1\|2763103_2763517_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_024017784.1\|2763497_2766110_+\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	96.2
WP_000847298.1\|2766106_2766436_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001365123.1\|2766435_2767134_+\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	1.8e-131	98.7
WP_103951720.1\|2767144_2767888_+\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	5.4e-150	99.2
WP_063075060.1\|2767833_2768463_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	7.8e-110	99.0
WP_167582726.1\|2768703_2772180_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	96.5
WP_096317465.1\|2772247_2772847_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	3.2e-105	95.5
WP_167582729.1\|2772911_2774225_+\|tail	phage tail protein	A0A0P0ZD68	Stx2-converting_phage	2.6e-78	98.9
WP_001023406.1\|2774226_2774496_+\|tail	phage tail protein	Q6H9S8	Enterobacteria_phage	2.4e-44	97.8
WP_024017371.1\|2774607_2775180_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	2.7e-40	48.7
WP_024017370.1\|2775397_2776096_+\|protease	T3SS effector zinc metalloprotease NleD	NA	NA	NA	NA
WP_085949012.1\|2776939_2777634_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_167582732.1\|2778435_2778696_+	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	1.5e-43	98.8
WP_001121225.1\|2778920_2779571_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_096317642.1\|2780165_2780480_-	DinI-like family protein	Q687E4	Enterobacteria_phage	5.0e-25	80.6
WP_096317640.1\|2781911_2783372_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	6.2e-41	30.1
WP_000214712.1\|2783407_2783611_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2

DBSCAN-SWA_13

2919535 : 3032244

113

Escherichia_phage(47.69%)

tail,capsid,portal,head,holin,transposase,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061301788.1\|2919535_2920744_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	2.0e-207	93.0
WP_001261013.1\|2921270_2921939_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_000586732.1\|2922241_2922835_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_001341359.1\|2922831_2923824_-	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_001234054.1\|2923947_2924928_+	LbetaH domain-containing protein	NA	NA	NA	NA
WP_000140877.1\|2924922_2925459_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_001296778.1\|2925521_2925746_-	YdcH family protein	NA	NA	NA	NA
WP_065180205.1\|2925885_2927541_-	glucan biosynthesis protein OpgD	NA	NA	NA	NA
WP_000013783.1\|2927765_2929109_-	VOC family protein	NA	NA	NA	NA
WP_096245445.1\|2929325_2930249_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001098531.1\|2930286_2931927_-	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_001320773.1\|2932325_2932475_+	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_000731833.1\|2932546_2932720_-	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_001307188.1\|2932964_2933495_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	3.1e-19	44.9
WP_000048647.1\|2933683_2934685_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_000115944.1\|2934726_2936166_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_001027942.1\|2936362_2937163_-	YdcF family protein	NA	NA	NA	NA
WP_096317555.1\|2937434_2941337_-	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	2.2e-53	29.5
WP_000048948.1\|2941537_2942143_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_096245443.1\|2943498_2945256_-	bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000890909.1\|2945271_2946168_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_000177525.1\|2946167_2946773_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_000477179.1\|2946943_2949250_-	DUF2773 domain-containing bactofilin	NA	NA	NA	NA
WP_000097801.1\|2949313_2950174_-	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
WP_001123454.1\|2950404_2950995_-	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
WP_000041176.1\|2950976_2951927_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
WP_000632286.1\|2952027_2953341_-	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_001206190.1\|2953367_2954573_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_000018413.1\|2954572_2954995_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_000973362.1\|2954984_2956412_-	3-hydroxyacyl-CoA dehydrogenase PaaC	NA	NA	NA	NA
WP_000969777.1\|2956413_2957202_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
WP_001292353.1\|2957201_2957969_-	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA
WP_000206377.1\|2957965_2959036_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	NA	NA	NA
WP_001189197.1\|2959043_2959541_-	phenylacetate degradation protein PaaD	NA	NA	NA	NA
WP_001072831.1\|2959555_2960302_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_000073393.1\|2960310_2960598_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_000191073.1\|2960609_2961539_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_001186481.1\|2961823_2963869_+	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
WP_096317557.1\|2964116_2966390_+	primary-amine oxidase	NA	NA	NA	NA
WP_106505224.1\|2966447_2967947_-	phenylacetaldehyde dehydrogenase	NA	NA	NA	NA
WP_001067509.1\|2968182_2969088_+	transcriptional regulator FeaR	NA	NA	NA	NA
WP_001345059.1\|2969259_2969589_-	YdbL family protein	NA	NA	NA	NA
WP_000698141.1\|2969593_2969779_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_000900974.1\|2969775_2972415_-	YdbH family protein	NA	NA	NA	NA
WP_000762229.1\|2972622_2973612_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
WP_001295716.1\|2973722_2974145_+	heat shock protein HslJ	NA	NA	NA	NA
WP_001295715.1\|2974141_2974408_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_096245442.1\|2974681_2978206_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_047643691.1\|2978572_2979706_+	porin OmpN	Q1MVN1	Enterobacteria_phage	6.3e-118	58.5
WP_001295593.1\|2979846_2980281_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_001143784.1\|2980861_2981503_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	6.8e-109	100.0
WP_001443810.1\|2981584_2982214_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.3e-77	92.2
WP_001131659.1\|2982286_2982862_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	5.3e-89	88.4
WP_096317558.1\|2982974_2983244_-\|tail	phage tail protein	A0A0P0ZCV7	Stx2-converting_phage	2.1e-43	96.6
WP_167582744.1\|2983245_2984559_-\|tail	phage tail protein	Q6H9S9	Enterobacteria_phage	5.3e-76	98.4
WP_106508758.1\|2984623_2985223_-	Ail/Lom family outer membrane beta-barrel protein	B6ETG5	Enterobacteria_phage	1.7e-109	99.0
WP_167582747.1\|2985293_2988788_-	host specificity protein J	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	98.2
WP_130069576.1\|2989034_2989667_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.6e-97	88.9
WP_001505235.1\|2989612_2990356_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	6.3e-151	100.0
WP_106505295.1\|2990366_2991065_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.0e-131	98.3
WP_000847304.1\|2991064_2991394_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	2.2e-55	95.4
WP_106645277.1\|2991390_2993970_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	83.0
WP_096245985.1\|2993950_2994364_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	2.7e-42	82.2
WP_000479105.1\|2994390_2994822_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.7e-42	68.8
WP_096939693.1\|2994835_2995588_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	3.5e-133	98.4
WP_047089877.1\|2995595_2995991_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.7e-59	83.2
WP_052907129.1\|2995987_2996563_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.1e-49	57.3
WP_001204549.1\|2996578_2996932_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	8.7e-42	70.1
WP_000201523.1\|2996924_2997299_-	hypothetical protein	NA	NA	NA	NA
WP_000522630.1\|2997350_2998379_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-114	61.3
WP_000256818.1\|2998436_2998784_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_001254038.1\|2998820_3000326_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_001430223.1\|3000315_3001908_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.1e-184	61.3
WP_000258991.1\|3001904_3002111_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	4.2e-12	60.0
WP_106485645.1\|3002094_3004023_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.0e-261	66.2
WP_000235436.1\|3003994_3004504_-\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_064763377.1\|3004898_3005123_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.9e-19	88.7
WP_001303878.1\|3005204_3005519_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_012816791.1\|3006046_3006232_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000675931.1\|3006453_3006567_-	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_001003118.1\|3006787_3007321_-	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
WP_000138558.1\|3007480_3007753_+	hypothetical protein	NA	NA	NA	NA
WP_167582750.1\|3008001_3008214_-\|holin	holin	O48430	Enterobacteria_phage	1.7e-29	98.5
WP_167582753.1\|3008661_3010512_-	DUF1737 domain-containing protein	B6DZ89	Enterobacteria_phage	0.0e+00	95.9
WP_000466957.1\|3011096_3011528_-	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
WP_000640158.1\|3012089_3012644_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.0e-68	69.1
WP_096245935.1\|3012640_3012931_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	6.3e-46	86.5
WP_000940343.1\|3012930_3013530_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	5.9e-107	92.5
WP_000687430.1\|3013589_3013763_-	hypothetical protein	A0A0U2I1S4	Escherichia_phage	1.6e-17	72.2
WP_001013636.1\|3013982_3014195_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.9e-26	96.9
WP_001278454.1\|3014383_3014488_-	hypothetical protein	NA	NA	NA	NA
WP_000208016.1\|3014603_3015473_-	DUF551 domain-containing protein	A0A1U9AJ59	Stx1_converting_phage	8.5e-123	79.2
WP_000209148.1\|3015747_3015966_-	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	5.2e-29	91.7
WP_000935424.1\|3015998_3016211_-	hypothetical protein	A0A2R2Z310	Escherichia_phage	2.8e-35	95.7
WP_001141110.1\|3016316_3016739_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.1e-62	88.5
WP_001370676.1\|3016754_3017516_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.0e-120	90.5
WP_096245387.1\|3017537_3018284_-	ATP-binding protein	V5UQI5	Shigella_phage	1.4e-113	80.9
WP_000899743.1\|3018290_3019148_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.0e-80	94.4
WP_000702023.1\|3019160_3019583_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	5.3e-70	95.0
WP_096245386.1\|3019566_3019842_-	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	2.2e-40	97.6
WP_000753628.1\|3019949_3020411_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	3.4e-78	100.0
WP_047085833.1\|3020664_3020817_+	DUF1391 family protein	NA	NA	NA	NA
WP_000887681.1\|3021228_3022077_+	hypothetical protein	A0A0P0ZE80	Stx2-converting_phage	5.9e-60	60.8
WP_000560226.1\|3022123_3022345_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	6.9e-37	97.3
WP_000245528.1\|3022338_3022515_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	9.7e-26	93.1
WP_096306341.1\|3022964_3025655_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	4.0e-163	91.1
WP_000166317.1\|3025647_3026457_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	6.8e-106	71.5
WP_096245389.1\|3026513_3026708_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	2.7e-29	90.6
WP_001302840.1\|3026700_3026889_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
WP_000079604.1\|3026988_3027204_+	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_162829242.1\|3027451_3028665_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_001157382.1\|3029806_3030742_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.4e-147	99.6
WP_000123745.1\|3030870_3032244_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1

DBSCAN-SWA_14

3111731 : 3175598

Stx2-converting_phage(29.79%)

tail,capsid,integrase,protease,head,holin,terminase

attL 3125510:3125537|attR 3175735:3175762

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422045.1\|3111731_3112781_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_000559281.1\|3113000_3113759_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	24.5
WP_001278906.1\|3113755_3114346_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001291220.1\|3114385_3115258_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001295575.1\|3115358_3115979_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001285661.1\|3115975_3116857_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|3116994_3117039_+	trp operon leader peptide	NA	NA	NA	NA
WP_001194584.1\|3117130_3118693_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763511.1\|3118692_3120288_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001344826.1\|3120291_3121650_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.6e-37	40.7
WP_000209520.1\|3121661_3122855_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000443067.1\|3122854_3123661_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000807649.1\|3124041_3124221_+	general stress protein	NA	NA	NA	NA
WP_001056491.1\|3124306_3124807_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001079509.1\|3124852_3125359_+	ferritin-like domain-containing protein	NA	NA	NA	NA
3125510:3125537	attL	NA	NA	NA	NA
WP_085562200.1\|3127190_3130577_+	DUF4765 family protein	A0A0N7KZG3	Stx2-converting_phage	0.0e+00	99.3
WP_123057446.1\|3130754_3131324_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	2.0e-56	60.3
WP_001023379.1\|3131437_3131707_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	8.7e-42	95.5
WP_000279017.1\|3131708_3133022_-\|tail	tail fiber protein	A0A0P0ZD68	Stx2-converting_phage	7.4e-78	98.9
WP_024184441.1\|3133086_3133710_-	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	2.7e-70	61.8
WP_167582762.1\|3133778_3137255_-	host specificity protein J	Q6H9T2	Enterobacteria_phage	0.0e+00	96.5
WP_072148784.1\|3137491_3138124_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.9e-104	93.3
WP_167582765.1\|3138069_3138813_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.1e-147	97.6
WP_001448747.1\|3138818_3139517_-\|tail	phage minor tail protein L	Q6H9T5	Enterobacteria_phage	1.6e-132	99.1
WP_000807964.1\|3139516_3139858_-\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_167582768.1\|3139850_3143093_-\|tail	phage tail tape measure protein	B6ETF7	Enterobacteria_phage	0.0e+00	97.5
WP_001453698.1\|3143144_3143354_-	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_001030063.1\|3143449_3143824_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001275508.1\|3143829_3144546_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.9e-129	100.0
WP_000133391.1\|3144604_3144949_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_000573374.1\|3144945_3145392_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_001007905.1\|3145388_3145739_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|3145748_3146075_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001063025.1\|3148277_3148499_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000173037.1\|3148543_3150481_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.4
WP_001372135.1\|3150544_3152206_-\|terminase	terminase large subunit	H6WZK9	Escherichia_phage	0.0e+00	100.0
WP_000958420.1\|3152202_3152766_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.8e-89	99.5
WP_000829192.1\|3153054_3153420_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_001428130.1\|3153461_3153647_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-20	92.3
WP_000347013.1\|3153776_3153917_-	hypothetical protein	NA	NA	NA	NA
WP_000735655.1\|3154273_3154498_-	hypothetical protein	NA	NA	NA	NA
WP_001208682.1\|3154562_3154769_-	hypothetical protein	H6WRZ6	Salmonella_phage	7.1e-12	64.7
WP_000539792.1\|3154996_3155143_-	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_167582771.1\|3155142_3155712_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	5.8e-104	98.9
WP_032343426.1\|3155982_3156516_-	lysozyme	B6DZ92	Enterobacteria_phage	7.4e-101	97.7
WP_000731221.1\|3156566_3156911_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.8e-55	95.6
WP_000284522.1\|3156915_3157131_-\|holin	holin	Q6H9V8	Enterobacteria_phage	1.3e-32	97.2
WP_167582774.1\|3157280_3159134_-	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	0.0e+00	96.6
WP_000216649.1\|3159448_3159616_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	5.4e-10	70.6
WP_096317757.1\|3160657_3161347_-	antiterminator	I6PDF8	Cronobacter_phage	5.3e-59	51.1
WP_000140002.1\|3161343_3161709_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.6e-38	67.5
WP_001265290.1\|3161709_3162765_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.9e-88	47.6
WP_010917803.1\|3162766_3163045_-	hypothetical protein	I6PCV7	Cronobacter_phage	2.2e-11	48.4
WP_001217394.1\|3163114_3163372_-	hypothetical protein	NA	NA	NA	NA
WP_000961821.1\|3163592_3163805_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.3e-16	72.9
WP_096245793.1\|3164091_3164841_-	AcfC family adhesin Paa	NA	NA	NA	NA
WP_129935530.1\|3165539_3165704_-	hypothetical protein	NA	NA	NA	NA
WP_157825328.1\|3166467_3167010_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.5e-85	98.7
WP_000020556.1\|3166921_3167962_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	7.9e-91	87.2
WP_000705622.1\|3167933_3168485_-	hypothetical protein	NA	NA	NA	NA
WP_000912298.1\|3168468_3168696_-	transcriptional regulator	NA	NA	NA	NA
WP_000787428.1\|3168772_3169180_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_001240336.1\|3169444_3169744_+	hypothetical protein	NA	NA	NA	NA
WP_001171903.1\|3169816_3170035_+	hypothetical protein	NA	NA	NA	NA
WP_000394552.1\|3170057_3170465_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	7.0e-11	37.8
WP_000920491.1\|3170442_3170676_-	hypothetical protein	NA	NA	NA	NA
WP_001342117.1\|3170669_3170837_-	hypothetical protein	NA	NA	NA	NA
WP_000449172.1\|3171236_3171425_+	cell division inhibitor	NA	NA	NA	NA
WP_000199480.1\|3171421_3171610_+	DUF1482 family protein	NA	NA	NA	NA
WP_000048478.1\|3171705_3174177_+	exonuclease	A0A192Y6E0	Salmonella_phage	1.1e-58	58.2
WP_000113189.1\|3174241_3174490_+	excisionase	NA	NA	NA	NA
WP_000113674.1\|3174467_3175598_+\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	3.4e-103	51.4
3175735:3175762	attR	NA	NA	NA	NA

DBSCAN-SWA_15

3259111 : 3353579

111

Escherichia_phage(35.29%)

tail,capsid,integrase,head,holin,transposase,tRNA,terminase

attL 3320235:3320250|attR 3346459:3346474

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085949012.1\|3259111_3259806_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_000807626.1\|3260809_3261271_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_000284276.1\|3261347_3262007_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_001297679.1\|3262078_3262372_-	hypothetical protein	NA	NA	NA	NA
WP_162540431.1\|3262376_3262538_-	hypothetical protein	NA	NA	NA	NA
WP_000695218.1\|3262608_3263010_+	hypothetical protein	NA	NA	NA	NA
WP_001056864.1\|3263112_3263481_-	hypothetical protein	NA	NA	NA	NA
WP_000072536.1\|3264000_3264696_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_000101055.1\|3264719_3265532_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_001185665.1\|3265535_3265802_+	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_001131446.1\|3266552_3266672_-	hypothetical protein	NA	NA	NA	NA
WP_001325743.1\|3266632_3266818_-	hypothetical protein	NA	NA	NA	NA
WP_000122462.1\|3266918_3267092_+	hypothetical protein	NA	NA	NA	NA
WP_001304448.1\|3267153_3267438_+	glycine zipper family protein	NA	NA	NA	NA
WP_000979977.1\|3267441_3267777_+	YmgD family protein	NA	NA	NA	NA
WP_167582777.1\|3267833_3270155_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	3.0e-90	43.0
WP_001297677.1\|3270271_3270481_-	hypothetical protein	NA	NA	NA	NA
WP_001299921.1\|3270880_3271099_-	hypothetical protein	NA	NA	NA	NA
WP_001246500.1\|3271230_3272754_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_001065752.1\|3273085_3273334_-	hypothetical protein	NA	NA	NA	NA
WP_000888772.1\|3273446_3273713_-	biofilm/acid-resistance regulator AriR	NA	NA	NA	NA
WP_000857995.1\|3273741_3274014_-	two-component-system connector protein YmgA	NA	NA	NA	NA
WP_000554144.1\|3274056_3274293_-	two-component-system connector protein YcgZ	NA	NA	NA	NA
WP_001299269.1\|3274606_3275818_+	blue light-responsive regulator BluF	NA	NA	NA	NA
WP_000332303.1\|3276022_3276754_+	DNA-binding transcriptional repressor BluR	Q9EYF2	Enterobacteria_phage	2.7e-53	50.5
WP_000373101.1\|3276974_3277379_+	DUF1398 domain-containing protein	NA	NA	NA	NA
WP_032141808.1\|3277431_3277542_+	hypothetical protein	NA	NA	NA	NA
WP_001307134.1\|3278074_3278398_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	8.0e-42	65.4
WP_085949012.1\|3278453_3279148_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_000444487.1\|3279274_3280525_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248691.1\|3280696_3281350_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|3281359_3281821_+	phosphatase NudJ	NA	NA	NA	NA
WP_001297484.1\|3281874_3282981_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_001297479.1\|3283016_3283658_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_096245660.1\|3283661_3285032_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.1e-108	45.1
WP_001265481.1\|3285199_3285871_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000735412.1\|3285870_3287331_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_000456506.1\|3287406_3288528_+	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000359438.1\|3288673_3289903_-	peptidase T	NA	NA	NA	NA
WP_000531601.1\|3290152_3291289_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
WP_000799402.1\|3291272_3292136_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_001435497.1\|3292368_3292533_-\|tail	tail fiber assembly domain protein	K7PMH7	Enterobacteria_phage	2.2e-16	87.5
WP_001132151.1\|3292749_3293340_-	T3SS effector guanine nucleotide exchange factor EspM2	NA	NA	NA	NA
WP_001144080.1\|3293523_3294174_+	T3SS effector NleG family protein	B6DZZ5	Stx2-converting_phage	2.8e-25	37.2
WP_001299273.1\|3294248_3295307_+	T3SS effector EspW	NA	NA	NA	NA
WP_089613097.1\|3295434_3296070_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	3.7e-75	92.0
WP_096245963.1\|3296142_3296724_-	T3SS effector NleG family protein	H6WZN1	Escherichia_phage	1.0e-47	54.8
WP_001131642.1\|3297014_3297590_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	4.1e-57	60.5
WP_053921583.1\|3297702_3297972_-\|tail	phage tail protein	H6WZN0	Escherichia_phage	9.3e-44	97.8
WP_167582694.1\|3297973_3299287_-\|tail	phage tail protein	Q9EYE8	Enterobacteria_phage	3.1e-76	98.6
WP_167582691.1\|3299351_3299975_-	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	1.3e-69	60.9
WP_167582996.1\|3300043_3302479_-	host specificity protein J	Q6H9T2	Enterobacteria_phage	0.0e+00	93.6
WP_162829242.1\|3302480_3303693_+\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_072148784.1\|3305084_3305717_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.9e-104	93.3
WP_167582780.1\|3305662_3306406_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	7.3e-147	96.8
WP_001448747.1\|3306411_3307110_-\|tail	phage minor tail protein L	Q6H9T5	Enterobacteria_phage	1.6e-132	99.1
WP_000807964.1\|3307109_3307451_-\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_167582768.1\|3307443_3310686_-\|tail	phage tail tape measure protein	B6ETF7	Enterobacteria_phage	0.0e+00	97.5
WP_001453698.1\|3310737_3310947_-	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_001030063.1\|3311042_3311417_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001275508.1\|3311422_3312139_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.9e-129	100.0
WP_000133391.1\|3312197_3312542_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_000573374.1\|3312538_3312985_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_001007905.1\|3312981_3313332_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|3313341_3313668_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001063025.1\|3315870_3316092_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000173037.1\|3316136_3318074_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.4
WP_001372135.1\|3318137_3319799_-\|terminase	terminase large subunit	H6WZK9	Escherichia_phage	0.0e+00	100.0
WP_000958416.1\|3319795_3320359_-\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	4.7e-90	100.0
3320235:3320250	attL	NA	NA	NA	NA
WP_000279796.1\|3320649_3321015_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	3.1e-66	100.0
WP_096317800.1\|3321056_3321281_+	YlcI/YnfO family protein	A0A0P0ZCG8	Stx2-converting_phage	2.3e-19	76.1
WP_001302717.1\|3321362_3321677_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_085949012.1\|3321970_3322665_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_012816791.1\|3322977_3323163_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000455406.1\|3323390_3323540_-	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_167582783.1\|3323539_3324106_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	2.7e-101	96.8
WP_032343426.1\|3324376_3324910_-	lysozyme	B6DZ92	Enterobacteria_phage	7.4e-101	97.7
WP_000731221.1\|3324960_3325305_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.8e-55	95.6
WP_000284522.1\|3325309_3325525_-\|holin	holin	Q6H9V8	Enterobacteria_phage	1.3e-32	97.2
WP_167582786.1\|3325674_3327528_-	DUF1737 domain-containing protein	B6DZ89	Enterobacteria_phage	0.0e+00	98.2
WP_000466957.1\|3328113_3328545_-	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
WP_000576620.1\|3329086_3330031_+	hypothetical protein	NA	NA	NA	NA
WP_000762843.1\|3330167_3330983_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	5.9e-118	84.1
WP_001258397.1\|3330982_3331840_-	hypothetical protein	A0A1B5FPA6	Escherichia_phage	1.6e-150	92.3
WP_000844629.1\|3331839_3332808_-	DNA primase	A0A1B5FPA8	Escherichia_phage	5.5e-187	99.4
WP_106485625.1\|3332809_3334468_-	DEAD/DEAH box helicase	A0A1B5FPA4	Escherichia_phage	0.0e+00	95.7
WP_021501352.1\|3334579_3334942_-	hypothetical protein	A0A1B5FPB1	Escherichia_phage	9.5e-60	96.7
WP_000402986.1\|3335953_3336409_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000930864.1\|3336521_3336965_+	helix-turn-helix domain-containing protein	A0A1B5FPB8	Escherichia_phage	1.6e-08	45.6
WP_096317488.1\|3336966_3337158_+	hypothetical protein	A0A1B5FPB5	Escherichia_phage	9.5e-27	93.7
WP_096317487.1\|3337154_3337346_+	hypothetical protein	A0A1B5FPB2	Escherichia_phage	3.3e-27	93.7
WP_021501354.1\|3337530_3337896_+	hypothetical protein	A0A1B5FPB3	Escherichia_phage	9.0e-34	69.8
WP_021501355.1\|3337888_3338104_+	hypothetical protein	A0A1B5FPB7	Escherichia_phage	3.6e-14	59.2
WP_160392285.1\|3338171_3338294_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.6e-11	82.5
WP_000566775.1\|3338290_3338683_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	2.3e-35	57.1
WP_000734576.1\|3338928_3339756_+	hypothetical protein	Q8W654	Enterobacteria_phage	9.0e-130	97.8
WP_021501357.1\|3339799_3340549_+	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	1.3e-116	83.1
WP_021501358.1\|3340545_3341115_+	hypothetical protein	A0A088C4R7	Shewanella_sp._phage	2.8e-29	40.0
WP_000457723.1\|3341238_3341481_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.3e-32	87.5
WP_032240805.1\|3341484_3341631_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.4e-22	93.8
WP_000528718.1\|3341639_3341876_+	excisionase family protein	Q8W657	Enterobacteria_phage	6.4e-41	100.0
WP_096317486.1\|3341931_3343245_+\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	4.6e-245	95.2
WP_096317485.1\|3343223_3343997_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	4.7e-72	99.2
WP_000252979.1\|3344049_3344445_+	membrane protein	NA	NA	NA	NA
WP_000019588.1\|3344485_3345229_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564746.1\|3345225_3346197_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000176770.1\|3346361_3348791_-	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
3346459:3346474	attR	NA	NA	NA	NA
WP_001214304.1\|3348815_3349916_-	cytochrome c	NA	NA	NA	NA
WP_001185741.1\|3350303_3351050_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001300190.1\|3351063_3351630_-	VOC family protein	NA	NA	NA	NA
WP_096245663.1\|3351845_3353579_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7

DBSCAN-SWA_16

3521534 : 3527841

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001556101.1\|3521534_3522083_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-50	57.6
WP_000857502.1\|3522087_3522966_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	5.1e-107	64.5
WP_032151758.1\|3523023_3523923_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.4e-29	35.2
WP_033560781.1\|3523922_3525008_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.8e-101	54.5
WP_000183060.1\|3525378_3526272_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_040079813.1\|3526446_3527841_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	8.3e-19	31.9

DBSCAN-SWA_17

3578469 : 3679664

112

Enterobacteria_phage(35.0%)

tail,capsid,integrase,head,holin,tRNA,terminase

attL 3626459:3626479|attR 3677170:3677190

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000476011.1\|3578469_3579831_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-217	100.0
WP_000716757.1\|3580160_3580478_-	hypothetical protein	NA	NA	NA	NA
WP_000807362.1\|3580892_3581792_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_000178552.1\|3581873_3582653_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000844219.1\|3582752_3583793_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000490679.1\|3583840_3585196_-	galactitol permease IIC component	NA	NA	NA	NA
WP_000823272.1\|3585199_3585484_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182914.1\|3585514_3585967_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000853886.1\|3585976_3587239_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_000289788.1\|3587267_3588122_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129551.1\|3588432_3589485_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858498.1\|3589741_3591019_+	MFS transporter	NA	NA	NA	NA
WP_000846217.1\|3591015_3592020_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	7.5e-14	29.4
WP_000011957.1\|3592016_3592982_+	sugar kinase	NA	NA	NA	NA
WP_000434038.1\|3592955_3593702_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001297420.1\|3593753_3594572_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	2.3e-24	38.5
WP_000822274.1\|3594636_3595437_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195587.1\|3595433_3596222_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|3596444_3596717_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_096245479.1\|3596837_3597662_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000153067.1\|3597880_3598219_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_001026152.1\|3598300_3599335_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_096245480.1\|3599348_3601829_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677395.1\|3601844_3602519_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830468.1\|3602599_3603142_-	fimbrial protein	NA	NA	NA	NA
WP_001324851.1\|3603433_3603715_-	YehE family protein	NA	NA	NA	NA
WP_001005448.1\|3603977_3605087_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001295427.1\|3605218_3607252_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
WP_106485504.1\|3607392_3610881_+	WGR and DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000356831.1\|3610890_3614523_+	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000636917.1\|3614584_3614902_+	hypothetical protein	NA	NA	NA	NA
WP_096245940.1\|3616141_3617230_+	MoxR family ATPase	NA	NA	NA	NA
WP_096317407.1\|3617240_3619520_+	hypothetical protein	NA	NA	NA	NA
WP_001292774.1\|3619512_3620649_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_032345200.1\|3620645_3622646_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
WP_001295429.1\|3622770_3623232_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_000950404.1\|3623271_3623742_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.0e-81	99.4
WP_000598641.1\|3623788_3624508_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_167582815.1\|3624504_3626190_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
3626459:3626479	attL	NA	NA	NA	NA
WP_001261972.1\|3626704_3626953_+	DinI-like family protein	H6WZN4	Escherichia_phage	4.5e-37	97.6
WP_001371770.1\|3627157_3628366_+	hypothetical protein	H6WZN3	Escherichia_phage	8.5e-230	99.3
WP_167582818.1\|3628811_3629705_+	Tir-cytoskeleton coupling protein TccP2	NA	NA	NA	NA
WP_106485502.1\|3629830_3630100_-\|tail	phage tail protein	A0A1I9LJT0	Stx_converting_phage	1.0e-42	94.4
WP_159120681.1\|3630101_3631415_-\|tail	phage tail protein	A0A0P0ZCC1	Stx2-converting_phage	3.0e-79	97.3
WP_167582821.1\|3631479_3632079_-	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	5.0e-106	95.0
WP_167582824.1\|3632145_3635622_-	host specificity protein J	B6DZB5	Enterobacteria_phage	0.0e+00	96.5
WP_000649829.1\|3635755_3636283_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-59	60.5
WP_153069652.1\|3636473_3637106_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.9e-104	93.3
WP_167582780.1\|3637051_3637795_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	7.3e-147	96.8
WP_001448747.1\|3637800_3638499_-\|tail	phage minor tail protein L	Q6H9T5	Enterobacteria_phage	1.6e-132	99.1
WP_000807964.1\|3638498_3638840_-\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_167582768.1\|3638832_3642075_-\|tail	phage tail tape measure protein	B6ETF7	Enterobacteria_phage	0.0e+00	97.5
WP_001453698.1\|3642126_3642336_-	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_001030063.1\|3642431_3642806_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001275508.1\|3642811_3643528_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.9e-129	100.0
WP_000133391.1\|3643586_3643931_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_000573374.1\|3643927_3644374_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_001007905.1\|3644370_3644721_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|3644730_3645057_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001063025.1\|3647583_3647805_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000173037.1\|3647849_3649787_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.4
WP_001372135.1\|3649850_3651512_-\|terminase	terminase large subunit	H6WZK9	Escherichia_phage	0.0e+00	100.0
WP_000958420.1\|3651508_3652072_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.8e-89	99.5
WP_000829192.1\|3652360_3652726_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_000095744.1\|3652767_3652968_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000828070.1\|3653099_3653426_-	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_012816791.1\|3653826_3654012_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001280923.1\|3654234_3654366_-	hypothetical protein	A0A0P0ZG36	Escherichia_phage	3.8e-11	93.0
WP_000661712.1\|3654460_3655156_-	phage antirepressor protein	Q5MBW0	Stx1-converting_phage	2.8e-124	99.1
WP_032254249.1\|3655429_3655963_-	lysozyme	A0A1U9AJ98	Stx1_converting_phage	1.8e-99	94.9
WP_000731237.1\|3656013_3656358_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	2.9e-58	99.1
WP_001299338.1\|3656362_3656578_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	5.9e-33	98.6
WP_167582827.1\|3656728_3658582_-	DUF1737 domain-containing protein	B6DZ89	Enterobacteria_phage	0.0e+00	98.7
WP_000466957.1\|3659167_3659599_-	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
WP_001204862.1\|3660442_3660877_-	antitermination protein	Q777W5	Enterobacteria_phage	1.8e-81	99.3
WP_000144764.1\|3660869_3661064_-	protein ninH	G9L694	Escherichia_phage	1.9e-30	100.0
WP_167582830.1\|3661060_3661666_-	recombination protein NinG	Q8VNP2	Enterobacteria_phage	9.6e-97	99.5
WP_001004008.1\|3661665_3662388_-	DNA-binding protein	A0A0P0ZCB2	Stx2-converting_phage	3.9e-129	99.6
WP_096245860.1\|3662462_3663140_-	phage antirepressor Ant	A0A0P0ZC44	Stx2-converting_phage	1.3e-126	98.2
WP_001254256.1\|3663415_3663598_-	NinE family protein	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
WP_000153269.1\|3663594_3664122_-	phage N-6-adenine-methyltransferase	H6WZI7	Escherichia_phage	1.2e-100	99.4
WP_000814576.1\|3664118_3664565_-	recombination protein NinB	A0A0N7C2V1	Escherichia_phage	2.4e-81	100.0
WP_001281772.1\|3664521_3664758_-	restriction alleviation protein, Lar family	Q8HA09	Enterobacteria_phage	1.2e-39	100.0
WP_000103674.1\|3664768_3664984_-	hypothetical protein	A0A1I9LJP7	Stx_converting_phage	2.2e-32	98.6
WP_016242498.1\|3665070_3666447_-	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	9.7e-254	99.8
WP_096317692.1\|3666443_3667331_-	replication protein	A5VW95	Enterobacteria_phage	4.0e-144	99.0
WP_001244625.1\|3667393_3667666_-	hypothetical protein	G9L679	Escherichia_phage	7.9e-43	98.9
WP_000438534.1\|3667688_3667985_-	hypothetical protein	G9L678	Escherichia_phage	2.0e-47	98.0
WP_000437872.1\|3668091_3668292_-	hypothetical protein	A4KWT7	Enterobacteria_phage	5.6e-30	98.5
WP_096317693.1\|3668392_3669106_+	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	2.1e-127	95.4
WP_159181587.1\|3669323_3669686_+	hypothetical protein	A0A1P8DTD0	Proteus_phage	8.1e-19	51.4
WP_123004627.1\|3670285_3670627_+	hypothetical protein	F1C5C1	Cronobacter_phage	1.8e-31	67.3
WP_000387877.1\|3670630_3670954_+	hypothetical protein	K7PKY8	Enterobacterial_phage	2.5e-59	98.1
WP_000394579.1\|3670991_3671282_+	hypothetical protein	K7PH98	Enterobacteria_phage	4.6e-33	76.8
WP_000972063.1\|3671623_3671758_+	hypothetical protein	K7PHK2	Enterobacteria_phage	3.1e-16	100.0
WP_001243354.1\|3671742_3671895_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	1.5e-19	98.0
WP_000010964.1\|3671891_3672050_+	hypothetical protein	A0A088CPT7	Enterobacteria_phage	3.1e-23	100.0
WP_000031370.1\|3672151_3672757_+	ERF family protein	Q9MCQ9	Enterobacteria_phage	4.1e-108	100.0
WP_000951334.1\|3672756_3673140_+	hypothetical protein	K7P6P8	Enterobacteria_phage	2.5e-66	98.4
WP_001111278.1\|3673163_3673457_+	DUF2856 family protein	G8C7L1	Escherichia_phage	2.5e-50	99.0
WP_096246019.1\|3673467_3673632_+	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	7.1e-23	98.1
WP_096317426.1\|3673628_3674192_+	hypothetical protein	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	2.4e-41	81.5
WP_053879252.1\|3674193_3674385_+	hypothetical protein	G9L660	Escherichia_phage	1.2e-24	92.1
WP_096245603.1\|3674387_3675071_+	DUF551 domain-containing protein	A0A0H4IU61	Shigella_phage	2.5e-61	50.6
WP_000457728.1\|3675158_3675401_+	DUF4222 domain-containing protein	B6DZ51	Enterobacteria_phage	1.5e-37	100.0
WP_000556583.1\|3675404_3675539_+	hypothetical protein	A0A0P0ZDP5	Stx2-converting_phage	4.9e-22	100.0
WP_001193437.1\|3675557_3675812_+	DUF1233 family excisionase	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
WP_000063648.1\|3675845_3677132_+\|integrase	site-specific integrase	Q9EY96	Enterobacteria_phage	7.6e-253	100.0
WP_029208472.1\|3677152_3677854_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	3.9e-102	99.5
3677170:3677190	attR	NA	NA	NA	NA
WP_001216961.1\|3677913_3678021_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|3678001_3678733_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569327.1\|3678737_3679664_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_18

3765465 : 3842210

Enterobacteria_phage(42.03%)

tail,capsid,integrase,protease,portal,lysis,head,holin,transposase,terminase

attL 3777865:3777900|attR 3844429:3844464

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000849214.1\|3765465_3765954_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_000758074.1\|3766102_3767749_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_000422230.1\|3767966_3769610_-	microcin J25 efflux ABC transporter YojI	W8CYL7	Bacillus_phage	9.5e-14	24.0
WP_000884922.1\|3769685_3770336_-	DNA oxidative demethylase AlkB	A0A2K9L3R7	Tupanvirus	1.4e-05	31.7
WP_000786386.1\|3770335_3771400_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.8e-18	50.5
WP_000406116.1\|3771473_3772529_-	FAD:protein FMN transferase ApbE	NA	NA	NA	NA
WP_000865576.1\|3772640_3773732_-	porin OmpC	Q1MVN1	Enterobacteria_phage	9.4e-119	60.1
WP_001249127.1\|3774470_3777143_+	phosphotransferase RcsD	NA	NA	NA	NA
WP_001061917.1\|3777159_3777810_+	transcriptional regulator RcsB	NA	NA	NA	NA
3777865:3777900	attL	NA	NA	NA	NA
WP_000876014.1\|3778009_3780859_-	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	1.4e-41	27.2
WP_001225855.1\|3781133_3781910_-	YfaP family protein	NA	NA	NA	NA
WP_001104541.1\|3781914_3783564_-	DUF2300 domain-containing protein	NA	NA	NA	NA
WP_129935148.1\|3783564_3787959_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_001025664.1\|3788760_3790083_+	type III secretion system effector NleA	H6WZN2	Escherichia_phage	2.5e-227	85.7
WP_102384962.1\|3790845_3792073_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_032321283.1\|3792112_3792760_-	T3SS effector NleG family protein	B6DZC0	Enterobacteria_phage	1.4e-37	43.3
WP_001023380.1\|3792969_3793239_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	7.3e-41	94.4
WP_167582833.1\|3793240_3794431_-\|tail	phage tail protein	A0A0P0ZDE7	Stx2-converting_phage	2.7e-79	96.6
WP_001228241.1\|3794495_3795095_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	2.4e-100	91.0
WP_167582836.1\|3795162_3798642_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	90.1
WP_000090884.1\|3798702_3799335_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	8.5e-96	99.0
WP_097412220.1\|3799271_3800015_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.5e-147	97.2
WP_167582612.1\|3800020_3800719_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.5e-133	98.7
WP_000847413.1\|3800718_3801048_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.3e-52	91.7
WP_096961651.1\|3801044_3803606_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	87.7
WP_000533431.1\|3803586_3804000_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.0e-41	82.8
WP_000479086.1\|3804026_3804458_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	4.8e-42	68.1
WP_159181577.1\|3804471_3805224_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	4.9e-127	93.6
WP_001429674.1\|3806534_3806891_-	hypothetical protein	A0A2R9YJI2	Escherichia_phage	4.1e-47	87.7
WP_000975037.1\|3806887_3807463_-\|tail	tail protein	A0A2R9YJK4	Escherichia_phage	7.5e-51	58.7
WP_001204544.1\|3807477_3807831_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.5e-41	69.2
WP_000201528.1\|3807823_3808198_-	hypothetical protein	NA	NA	NA	NA
WP_167582839.1\|3808249_3809134_-\|capsid	major capsid protein E	C6ZCY2	Enterobacteria_phage	2.9e-94	54.4
WP_000256818.1\|3809191_3809539_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_001254038.1\|3809575_3811081_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_001430223.1\|3811070_3812663_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.1e-184	61.3
WP_000258991.1\|3812659_3812866_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	4.2e-12	60.0
WP_106485645.1\|3812849_3814778_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.0e-261	66.2
WP_000235436.1\|3814749_3815259_-\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001427981.1\|3815653_3815848_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.4e-27	95.3
WP_000738423.1\|3816207_3816501_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001228695.1\|3816591_3816774_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000075153.1\|3816990_3817488_-	lysozyme RrrD	A0A1B5FP97	Escherichia_phage	1.6e-89	96.4
WP_000284524.1\|3817487_3817703_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_012578864.1\|3817845_3818244_+	hypothetical protein	H6WZJ8	Escherichia_phage	6.9e-11	83.3
WP_000499454.1\|3818324_3818483_-	DUF3927 family protein	NA	NA	NA	NA
WP_001302581.1\|3818568_3819312_-	hypothetical protein	NA	NA	NA	NA
WP_001028854.1\|3820184_3820850_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_001223927.1\|3820846_3821449_-	recombination protein NinG	A0A1U9AJF8	Stx1_converting_phage	1.6e-91	94.6
WP_001108084.1\|3821423_3821990_-	endonuclease	A0A1U9AJK5	Stx1_converting_phage	6.6e-108	99.5
WP_001429269.1\|3822483_3824319_+	hypothetical protein	A0A1U9AJG3	Stx1_converting_phage	0.0e+00	99.7
WP_001254228.1\|3824822_3825005_-	NinE family protein	A0A1U9AJF6	Stx1_converting_phage	1.1e-29	100.0
WP_000153270.1\|3825001_3825529_-	phage N-6-adenine-methyltransferase	K7PJZ4	Enterobacterial_phage	9.5e-101	100.0
WP_000810176.1\|3825525_3825972_-	recombination protein NinB	A0A0N7C2V1	Escherichia_phage	3.4e-75	92.6
WP_000229807.1\|3825979_3826186_-	hypothetical protein	G8C7M4	Escherichia_phage	1.8e-26	97.1
WP_000145926.1\|3826258_3826549_-	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
WP_000788878.1\|3826545_3827247_-	Replication protein 14	K7P6G2	Enterobacteria_phage	1.7e-129	99.6
WP_167582842.1\|3827243_3827774_-	hypothetical protein	C1JJ53	Enterobacteria_phage	3.6e-84	99.3
WP_000276885.1\|3827883_3828069_-	hypothetical protein	K7PHK4	Enterobacteria_phage	1.2e-26	100.0
WP_001095982.1\|3828149_3828800_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	4.9e-123	100.0
WP_000256573.1\|3829114_3829420_+	hypothetical protein	K7PJM7	Enterobacteria_phage	7.0e-48	99.0
WP_000930321.1\|3829422_3829761_+	hypothetical protein	K7PJW2	Enterobacteria_phage	5.8e-59	99.1
WP_000167595.1\|3829894_3830365_+	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.7e-88	100.0
WP_000065385.1\|3830514_3830883_+	DUF2528 family protein	M1FPD2	Enterobacteria_phage	3.8e-64	97.5
WP_001198860.1\|3830955_3831120_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	A0A0N6WES3	Escherichia_phage	1.4e-26	100.0
WP_000372926.1\|3831088_3831253_+	host cell division inhibitory peptide Kil	A0A0P0ZC96	Stx2-converting_phage	3.2e-23	98.1
WP_000995439.1\|3831307_3831604_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_096317335.1\|3831609_3832395_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	4.1e-148	99.6
WP_000186740.1\|3832391_3833069_+	YqaJ viral recombinase family protein	A0A1I9LJM9	Stx_converting_phage	4.6e-132	100.0
WP_001303590.1\|3833068_3833251_+	DUF1317 domain-containing protein	A0A0P0ZAS9	Stx2-converting_phage	7.4e-29	100.0
WP_000548547.1\|3833223_3833415_+	DUF1382 family protein	A0A1I9LJM8	Stx_converting_phage	1.9e-27	100.0
WP_001444000.1\|3833425_3833707_+	cell division protein ZapA	A0A0P0ZBQ0	Stx2-converting_phage	1.9e-47	100.0
WP_000763358.1\|3833805_3834027_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.6e-33	95.9
WP_001289868.1\|3834023_3834629_+	ead/Ea22-like family protein	A0A0K2FJF6	Enterobacteria_phage	1.7e-45	96.9
WP_001345188.1\|3834625_3834976_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	3.3e-33	80.2
WP_000457736.1\|3835050_3835293_+	DUF4222 domain-containing protein	H6WZF9	Escherichia_phage	3.7e-36	96.2
WP_096317333.1\|3835411_3835756_+	hypothetical protein	K7PJY7	Enterobacterial_phage	1.2e-59	99.1
WP_001444001.1\|3835861_3836080_+	excisionase	K7PKU2	Enterobacteria_phage	2.4e-34	98.6
WP_000533670.1\|3836057_3837128_+\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	1.1e-196	98.0
WP_001215757.1\|3837122_3837749_-	DUF1175 domain-containing protein	NA	NA	NA	NA
WP_000012296.1\|3837745_3839434_-	DUF2138 domain-containing protein	NA	NA	NA	NA
WP_072668323.1\|3839582_3842210_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	2.1e-92	30.6
3844429:3844464	attR	NA	NA	NA	NA

DBSCAN-SWA_19

3963948 : 4003695

Enterobacteria_phage(41.51%)

integrase,protease,lysis,portal,holin,transposase,terminase

attL 3960679:3960695|attR 4008999:4009015

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3960679:3960695	attL	NA	NA	NA	NA
WP_167583002.1\|3963948_3965106_+\|integrase	prophage integrase IntS	K7P7E1	Enterobacteria_phage	5.3e-221	98.7
WP_167582851.1\|3965519_3966644_+	hypothetical protein	NA	NA	NA	NA
WP_167582854.1\|3968860_3971254_-	lytic transglycosylase domain-containing protein	Q716G2	Shigella_phage	0.0e+00	96.3
WP_167582857.1\|3971254_3972565_-	phage DNA ejection protein	A0A2D1GLX5	Escherichia_phage	2.5e-195	88.3
WP_167582860.1\|3972574_3973270_-	DNA transfer protein	G5DA80	Enterobacteria_phage	2.7e-87	94.9
WP_167582863.1\|3973272_3973728_-	DUF2824 family protein	A5VW67	Enterobacteria_phage	4.4e-86	98.7
WP_074517021.1\|3973727_3974576_-	hypothetical protein	Q716G6	Shigella_phage	4.3e-103	99.3
WP_167582866.1\|3974575_3975994_-	hypothetical protein	A0A2D1GM00	Escherichia_phage	6.0e-275	99.2
WP_024245630.1\|3976002_3976485_-	packaged DNA stabilization protein p27	Q716G8	Shigella_phage	9.3e-87	98.8
WP_000375639.1\|3976459_3976645_-	hypothetical protein	Q716G9	Shigella_phage	4.6e-26	98.4
WP_015973865.1\|3976687_3977959_-	hypothetical protein	Q716H0	Shigella_phage	1.0e-241	100.0
WP_000426736.1\|3977970_3978855_-	hypothetical protein	Q716H1	Shigella_phage	4.7e-145	100.0
WP_167582869.1\|3978868_3980995_-\|portal	portal protein	Q9AYZ9	Salmonella_phage	0.0e+00	99.0
WP_106505185.1\|3980997_3982410_-\|terminase	PBSX family phage terminase large subunit	Q716H3	Shigella_phage	3.7e-277	99.6
WP_000179913.1\|3982406_3982832_-	hypothetical protein	Q716H4	Shigella_phage	5.0e-68	90.8
WP_167582872.1\|3982911_3983154_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	4.9e-36	98.8
WP_167582875.1\|3983381_3983924_-	Rha family transcriptional regulator	A5VW78	Enterobacteria_phage	7.0e-99	99.4
WP_001139677.1\|3984131_3984284_-	hypothetical protein	A0A088CQ22	Enterobacteria_phage	8.1e-21	98.0
WP_106505186.1\|3984271_3984736_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	1.9e-73	94.8
WP_053902255.1\|3984732_3985209_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	3.7e-88	99.4
WP_000783734.1\|3985192_3985516_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_001235460.1\|3986186_3986810_-	antitermination protein	K7PM87	Enterobacteria_phage	9.8e-113	98.6
WP_167582878.1\|3986990_3987353_-	RusA family crossover junction endodeoxyribonuclease	K7P6I9	Enterobacteria_phage	1.0e-61	99.2
WP_167582881.1\|3987349_3987640_-	DUF1364 domain-containing protein	A5VW86	Enterobacteria_phage	2.2e-51	99.0
WP_001279421.1\|3987639_3987909_-	hypothetical protein	K7PHK7	Enterobacteria_phage	7.1e-44	100.0
WP_000950962.1\|3987901_3988078_-	protein ninF	A0A220NRM2	Escherichia_phage	1.9e-26	100.0
WP_000386657.1\|3988077_3988437_-	DUF2591 family protein	G8EYI2	Enterobacteria_phage	1.2e-62	95.8
WP_167582884.1\|3988418_3988616_-	NinE family protein	A5VW90	Enterobacteria_phage	3.4e-27	98.3
WP_167582887.1\|3988612_3989140_-	phage N-6-adenine-methyltransferase	K7PJZ4	Enterobacterial_phage	1.6e-100	99.4
WP_000736903.1\|3989136_3989577_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.0e-81	100.0
WP_167582890.1\|3989653_3991090_-	AAA family ATPase	G5DA90	Enterobacteria_phage	1.4e-274	99.8
WP_167582893.1\|3991079_3992111_-	DNA replication protein	A0A0N7C1Z7	Escherichia_phage	2.8e-157	86.6
WP_167582896.1\|3992103_3992250_-	DUF2740 family protein	Q687G5	Enterobacteria_phage	1.5e-19	97.9
WP_000438538.1\|3992282_3992582_-	hypothetical protein	A0A0P0ZBJ0	Stx2-converting_phage	4.8e-49	99.0
WP_000067727.1\|3992691_3992907_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_014532159.1\|3992982_3993678_+	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	2.0e-130	97.0
WP_123055380.1\|3994031_3994367_+	hypothetical protein	F1C5C1	Cronobacter_phage	5.9e-32	67.6
WP_000167595.1\|3994375_3994846_+	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.7e-88	100.0
WP_001198861.1\|3995036_3995201_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_001484321.1\|3995169_3995313_+	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.8e-17	95.7
WP_000995439.1\|3995388_3995685_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000100847.1\|3995690_3996476_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000611716.1\|3996472_3997153_+	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	3.0e-131	98.2
WP_000149544.1\|3997149_3997332_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000548537.1\|3997304_3997496_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_001443983.1\|3997506_3997788_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000763383.1\|3997886_3998108_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
WP_167582899.1\|3998104_3998842_+	ead/Ea22-like family protein	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	3.4e-120	94.3
WP_106505152.1\|3998801_3998993_+	hypothetical protein	G9L660	Escherichia_phage	1.8e-25	95.2
WP_106505151.1\|3998995_3999811_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	2.9e-48	44.2
WP_167582902.1\|3999940_4000684_+	hypothetical protein	K7P7Q8	Enterobacteria_phage	1.7e-143	98.4
WP_153069633.1\|4000740_4001040_+	hypothetical protein	Q9G076	Enterobacteria_phage	6.0e-52	98.0
WP_001163428.1\|4001148_4001349_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_085949012.1\|4003001_4003695_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
4008999:4009015	attR	NA	NA	NA	NA

DBSCAN-SWA_20

4182131 : 4267801

Salmonella_phage(41.51%)

tail,integrase,head,holin,transposase,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940018.1\|4182131_4182869_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553451.1\|4182987_4183791_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_001299515.1\|4183935_4184790_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000982994.1\|4184980_4186261_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_000244193.1\|4186252_4187392_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000423261.1\|4187551_4188442_-	DNA-binding transcriptional regulator HcaR	NA	NA	NA	NA
WP_096245398.1\|4188577_4189939_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_001276072.1\|4189935_4190454_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA
WP_001080102.1\|4190453_4190774_+	bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit	NA	NA	NA	NA
WP_001281377.1\|4190770_4191583_+	3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase	NA	NA	NA	NA
WP_000660797.1\|4191592_4192795_+	phenylpropionate dioxygenase ferredoxin reductase subunit	NA	NA	NA	NA
WP_001094726.1\|4192891_4193314_+	DoxX family protein	NA	NA	NA	NA
WP_000158547.1\|4193361_4194234_-	aldose 1-epimerase	NA	NA	NA	NA
WP_000700816.1\|4194245_4195340_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_001276671.1\|4195372_4196371_-	ABC transporter permease	NA	NA	NA	NA
WP_000493455.1\|4196395_4197907_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.6e-13	27.3
WP_001124887.1\|4197929_4198913_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_167582908.1\|4199009_4202291_-	DUF5107 domain-containing protein	NA	NA	NA	NA
WP_001200780.1\|4202408_4203602_+	ROK family protein	NA	NA	NA	NA
WP_000919159.1\|4203665_4204919_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-101	52.7
WP_000883122.1\|4205246_4206437_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_000717694.1\|4206481_4206820_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_001298983.1\|4206880_4208215_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	3.9e-10	37.3
WP_001215888.1\|4208204_4208918_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_001341630.1\|4209082_4210510_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	3.9e-16	24.9
WP_000970119.1\|4211085_4214973_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	9.1e-132	59.3
WP_000734212.1\|4215230_4216787_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001295367.1\|4216783_4217320_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000190655.1\|4217344_4217980_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001013779.1\|4218188_4219037_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_167583005.1\|4219227_4219620_+	hypothetical protein	F1BUP1	Erwinia_phage	8.0e-12	43.2
WP_106485484.1\|4219641_4220082_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	6.2e-53	69.0
WP_096317320.1\|4220053_4220647_-\|tail	phage tail protein	Q9MCR5	Enterobacteria_phage	1.8e-60	64.9
WP_001115577.1\|4220646_4221141_-	hypothetical protein	K7PH60	Enterobacterial_phage	1.3e-80	94.1
WP_167582911.1\|4221170_4221470_+	recombinase family protein	A0A1S6L009	Salmonella_phage	1.5e-39	89.9
WP_001300563.1\|4221636_4222749_-\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA
WP_054579756.1\|4222839_4223685_-	hypothetical protein	NA	NA	NA	NA
WP_001253100.1\|4223986_4224253_-	hypothetical protein	A0A0M3ULK3	Salmonella_phage	2.7e-35	83.0
WP_167567394.1\|4224669_4225290_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	2.3e-85	74.0
WP_162829242.1\|4225273_4226487_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_001197073.1\|4226659_4227859_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	4.9e-185	83.6
WP_001270632.1\|4227858_4228212_-	hypothetical protein	A0A0M4R339	Salmonella_phage	9.0e-55	89.7
WP_000301079.1\|4228211_4228964_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	5.0e-87	65.9
WP_000110002.1\|4229028_4229457_-	hypothetical protein	NA	NA	NA	NA
WP_000050470.1\|4229456_4230188_-	hypothetical protein	NA	NA	NA	NA
WP_001214055.1\|4230337_4230679_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.5e-33	86.8
WP_000081738.1\|4230682_4231744_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	4.5e-158	82.3
WP_000155119.1\|4231746_4232049_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	2.2e-49	92.0
WP_001420197.1\|4232048_4232636_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	6.9e-84	88.5
WP_162829242.1\|4234174_4235388_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_001254932.1\|4236031_4237183_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_000393958.1\|4237334_4237787_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.8e-55	72.0
WP_000109249.1\|4237790_4238231_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
WP_054579873.1\|4238241_4239387_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.3e-160	73.2
WP_054579874.1\|4239390_4239954_-	hypothetical protein	A0A0M4R331	Salmonella_phage	5.8e-80	76.3
WP_054579875.1\|4239928_4240318_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	7.3e-66	95.3
WP_054579876.1\|4240304_4240859_-	hypothetical protein	A0A0M4S631	Salmonella_phage	5.7e-80	82.6
WP_001125665.1\|4240855_4241263_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	8.7e-70	95.6
WP_001473318.1\|4241491_4242433_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.4e-155	86.9
WP_001066723.1\|4242444_4242951_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	2.9e-70	80.5
WP_021529141.1\|4242954_4244175_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.4e-200	88.3
WP_137530144.1\|4244189_4244924_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	2.2e-95	84.2
WP_000113490.1\|4244814_4246281_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	6.7e-261	91.8
WP_054579877.1\|4246280_4247903_-	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.4
WP_024246483.1\|4247975_4248182_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_000162795.1\|4248215_4248788_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	6.1e-61	69.6
WP_024246484.1\|4248849_4249374_-	hypothetical protein	K7P6W1	Enterobacteria_phage	1.5e-42	67.7
WP_024246485.1\|4249357_4249834_-	glycoside hydrolase family protein	Q8SBE0	Shigella_phage	2.3e-85	95.6
WP_000781776.1\|4249837_4250179_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.8e-53	91.9
WP_001174014.1\|4250624_4250966_-	hypothetical protein	NA	NA	NA	NA
WP_001244506.1\|4250997_4251420_-	antitermination protein	Q8W638	Enterobacteria_phage	8.8e-41	63.3
WP_000868571.1\|4251465_4251696_-	hypothetical protein	NA	NA	NA	NA
WP_096245616.1\|4254283_4254484_-	transcriptional regulator	K7RWG7	Bacteriophage	1.0e-07	50.0
WP_096245617.1\|4254625_4255300_+	helix-turn-helix transcriptional regulator	B6SCU0	Bacteriophage	3.0e-59	51.1
WP_096245618.1\|4255727_4256246_-	hypothetical protein	K7P861	Enterobacteria_phage	1.9e-37	52.4
WP_000801672.1\|4256470_4256620_+	hypothetical protein	NA	NA	NA	NA
WP_000051353.1\|4256616_4257519_+	hypothetical protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
WP_021529149.1\|4257521_4258823_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	2.3e-132	55.7
WP_000769011.1\|4258838_4259387_+	DUF2815 family protein	Q775A5	Bordetella_phage	1.6e-66	65.9
WP_096306367.1\|4259438_4260077_+	hypothetical protein	H6WRY3	Salmonella_phage	1.0e-72	69.8
WP_000490740.1\|4260144_4260414_-	hypothetical protein	NA	NA	NA	NA
WP_054579863.1\|4260470_4262534_+	DNA polymerase	Q775A3	Bordetella_phage	2.3e-275	67.5
WP_000008820.1\|4262539_4262755_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_000637722.1\|4262751_4263051_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	5.5e-29	64.2
WP_054579864.1\|4263040_4263322_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	1.7e-27	64.0
WP_042043889.1\|4263304_4264237_-	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	6.5e-52	39.0
WP_054579865.1\|4264340_4265735_+	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	1.9e-212	73.5
WP_054579866.1\|4265731_4265932_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_054579867.1\|4265928_4267326_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000054752.1\|4267540_4267801_+	4Fe-4S dicluster ferredoxin YfhL	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5

DBSCAN-SWA_21

4402162 : 4409302

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096317340.1\|4402162_4404724_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.9e-30	20.6
WP_001141347.1\|4404829_4405486_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	5.6e-50	47.2
WP_001297141.1\|4405536_4406304_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_000847985.1\|4406499_4407408_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590392.1\|4407404_4408667_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|4408663_4409302_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_22

4653183 : 4719332

Escherichia_phage(22.22%)

integrase,protease,tRNA,transposase

attL 4643711:4643726|attR 4725043:4725058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4643711:4643726	attL	NA	NA	NA	NA
WP_001297457.1\|4653183_4653942_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_001169551.1\|4653997_4654741_-	2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_096245744.1\|4654727_4655834_-	D-glucosaminate-6-phosphate ammonia lyase	NA	NA	NA	NA
WP_160333632.1\|4655837_4656698_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_000380263.1\|4656694_4657444_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_001284302.1\|4657469_4657955_-	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA
WP_000214203.1\|4657965_4658394_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_001252647.1\|4658512_4661311_-	transcriptional regulator DagR	NA	NA	NA	NA
WP_000105566.1\|4661569_4662490_-	agmatinase	NA	NA	NA	NA
WP_000758903.1\|4662625_4663357_-	membrane protein	NA	NA	NA	NA
WP_001295380.1\|4663502_4665479_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001338822.1\|4665487_4665619_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001303650.1\|4665754_4665970_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|4666273_4667428_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_085949012.1\|4667651_4668345_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.1e-133	99.1
WP_001112301.1\|4668637_4670032_+	galactose/proton symporter	NA	NA	NA	NA
WP_000858396.1\|4670108_4670606_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286500.1\|4670700_4671408_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001222508.1\|4671487_4672219_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593273.1\|4672231_4673182_+	glutathione synthase	NA	NA	NA	NA
WP_000126441.1\|4673218_4673854_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|4673853_4674270_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001055633.1\|4674445_4675426_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|4675443_4676148_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|4676165_4676732_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|4676728_4677019_+	YggU family protein	NA	NA	NA	NA
WP_001174743.1\|4677026_4677620_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239919.1\|4677612_4678749_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000784004.1\|4679060_4680047_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000577033.1\|4680091_4680595_+	TRAP transporter small permease	NA	NA	NA	NA
WP_000745217.1\|4681951_4682959_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394117.1\|4683075_4684122_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|4684297_4685017_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107564.1\|4685200_4685527_-	YggL family protein	NA	NA	NA	NA
WP_000786911.1\|4685526_4686246_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001321419.1\|4686406_4687459_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|4687486_4687762_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000760323.1\|4687826_4688906_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001049791.1\|4689107_4690364_+	nucleoside permease NupG	NA	NA	NA	NA
WP_000839764.1\|4690413_4692549_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234514.1\|4692946_4693654_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_167582929.1\|4694032_4695295_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	2.0e-80	42.8
WP_000286652.1\|4698280_4701130_+	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	2.2e-183	39.6
WP_001273465.1\|4701155_4702136_+	ATP-binding protein	A0A1B2RW50	Lymphocystis_disease_virus	4.2e-17	30.2
WP_000126413.1\|4702145_4704533_+	S8 family peptidase	NA	NA	NA	NA
WP_000105162.1\|4704542_4706171_+	site-specific DNA-methyltransferase	A0A0K1LNZ9	Escherichia_phage	4.6e-85	42.6
WP_000081335.1\|4706173_4709044_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_024237546.1\|4709132_4709426_+	hypothetical protein	NA	NA	NA	NA
WP_000747051.1\|4709495_4709846_+\|transposase	transposase	Q716C1	Shigella_phage	1.8e-39	98.9
WP_000005572.1\|4711471_4712758_-	McrC family protein	NA	NA	NA	NA
WP_000366615.1\|4712750_4714808_-	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	2.9e-36	33.8
WP_001013334.1\|4715580_4716006_-	hypothetical protein	NA	NA	NA	NA
WP_096098544.1\|4716002_4716392_-	hypothetical protein	NA	NA	NA	NA
WP_001545062.1\|4716645_4717215_-	inovirus Gp2 family protein	NA	NA	NA	NA
WP_096098543.1\|4718118_4719332_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.8e-102	58.4
4725043:4725058	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP047379

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

59427 : 113434

Escherichia_phage(41.18%)

integrase,protease,transposase

attL 53535:53550|attR 114195:114210

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
53535:53550	attL	NA	NA	NA	NA
WP_000795947.1\|59427_60603_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001285422.1\|60773_60986_+	hypothetical protein	NA	NA	NA	NA
WP_001232449.1\|61346_62429_+	hypothetical protein	NA	NA	NA	NA
WP_001284313.1\|62595_64095_-	kinase	NA	NA	NA	NA
WP_000081622.1\|64120_65758_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_001253653.1\|65757_66798_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001253658.1\|66883_67522_-	VWA domain-containing protein	NA	NA	NA	NA
WP_000116681.1\|67521_68163_-	TerD family protein	NA	NA	NA	NA
WP_001253657.1\|68185_68824_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001176767.1\|69286_69754_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_000506887.1\|69771_70980_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_000797366.1\|70990_71947_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_001182411.1\|71946_73026_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	8.1e-38	33.8
WP_001040056.1\|73027_73801_-	hypothetical protein	NA	NA	NA	NA
WP_001280118.1\|73793_74936_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	7.7e-31	35.4
WP_001035166.1\|74945_76004_-	hypothetical protein	NA	NA	NA	NA
WP_000254140.1\|76326_76908_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	1.7e-13	30.5
WP_001054789.1\|76907_78065_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_000007449.1\|78087_78543_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|78565_79606_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116680.1\|79654_80233_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_000301242.1\|80300_80876_+	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_001053338.1\|81304_82546_+	tellurium resistance protein TerF	NA	NA	NA	NA
WP_000077926.1\|83108_83390_-	hypothetical protein	NA	NA	NA	NA
WP_000398480.1\|83439_83631_-	hypothetical protein	NA	NA	NA	NA
WP_001151575.1\|83722_84064_-	hypothetical protein	NA	NA	NA	NA
WP_000341066.1\|84436_84829_+	hypothetical protein	NA	NA	NA	NA
WP_024136327.1\|85432_85726_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088046.1\|85730_87056_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_000134171.1\|87116_87323_+	hypothetical protein	NA	NA	NA	NA
WP_000985911.1\|87424_87835_+	hypothetical protein	NA	NA	NA	NA
WP_001572439.1\|87847_88663_+	HNH endonuclease	G0X580	Salmonella_phage	1.1e-15	36.5
WP_001043843.1\|88916_89342_+	hypothetical protein	NA	NA	NA	NA
WP_001572440.1\|90087_90387_+	hypothetical protein	NA	NA	NA	NA
WP_032192809.1\|90699_92739_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	2.5e-24	24.8
WP_001572342.1\|92735_93722_-	hypothetical protein	NA	NA	NA	NA
WP_001194555.1\|94752_94956_+	hypothetical protein	NA	NA	NA	NA
WP_001287392.1\|95297_95702_-	H-NS histone family protein	NA	NA	NA	NA
WP_000175476.1\|96199_96436_-	hypothetical protein	NA	NA	NA	NA
WP_001572344.1\|96477_96933_-	hypothetical protein	NA	NA	NA	NA
WP_000490638.1\|96992_97658_-	hypothetical protein	NA	NA	NA	NA
WP_001426317.1\|97715_98096_-	hypothetical protein	NA	NA	NA	NA
WP_000193209.1\|98738_99557_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001572381.1\|99553_100759_+	hypothetical protein	NA	NA	NA	NA
WP_000078514.1\|101038_102358_-	DUF1173 family protein	NA	NA	NA	NA
WP_000220758.1\|102380_102548_-	hypothetical protein	A0A2D2W2Z9	Escherichia_phage	7.3e-07	50.9
WP_001067855.1\|103946_104651_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_063102497.1\|105278_105665_+	bleomycin binding protein	NA	NA	NA	NA
WP_057109146.1\|105984_106377_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_001067858.1\|106711_107416_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_167583015.1\|108395_108962_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.1e-49	86.2
WP_001067858.1\|108986_109691_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000454193.1\|110199_110550_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001067858.1\|110768_111473_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001167416.1\|111683_112445_+	methyltransferase	A0A2I7RNS1	Vibrio_phage	1.2e-19	32.9
WP_000149861.1\|112538_112802_+	hypothetical protein	M9UXL5	Escherichia_phage	3.2e-09	46.5
WP_001572415.1\|112822_113434_+	hypothetical protein	A0A248SKW5	Klebsiella_phage	1.2e-09	71.1
114195:114210	attR	NA	NA	NA	NA

DBSCAN-SWA_2

121583 : 164000

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067858.1\|121583_122288_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_046788546.1\|123379_123781_+	hypothetical protein	NA	NA	NA	NA
WP_001067784.1\|123865_124570_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_001447541.1\|125494_126379_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|126595_127810_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001255015.1\|127837_128143_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015344975.1\|128254_129748_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|129778_130030_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|129923_130226_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|130312_131128_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_085940648.1\|131217_132307_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_165488106.1\|132504_132876_-	phenol hydroxylase	NA	NA	NA	NA
WP_000602738.1\|134800_135553_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
WP_000742814.1\|135974_137000_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
WP_001199192.1\|137228_138005_-	aminoglycoside N-acetyltransferase AAC(3)-IVa	NA	NA	NA	NA
WP_001067855.1\|138118_138823_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_063840321.1\|138966_139521_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|139651_140482_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_000186237.1\|140619_141252_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_001749986.1\|141336_141789_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_000679427.1\|142011_142359_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|142352_143192_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|143319_143523_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|143747_144452_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071523897.1\|145098_145344_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|145500_145998_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001067855.1\|146402_147107_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|147296_148112_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067855.1\|148262_148967_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000612791.1\|149197_150061_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
WP_001354008.1\|150098_150344_+	hypothetical protein	NA	NA	NA	NA
WP_000034420.1\|150812_151604_+	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
WP_109023896.1\|151606_151882_-	hypothetical protein	NA	NA	NA	NA
WP_000800531.1\|152783_153116_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
WP_001206316.1\|153285_154077_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000095725.1\|154169_155429_-	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
WP_001261740.1\|155690_156482_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000050382.1\|156539_157148_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_001456218.1\|157243_158086_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA
WP_001067858.1\|159083_159788_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001067855.1\|160587_161292_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_167583018.1\|161338_162940_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	7.2e-293	100.0
WP_001067855.1\|162930_163635_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000844627.1\|163757_164000_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047380

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047378

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP047379

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection