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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP050763 Salmonella enterica subsp. enterica serovar Indiana strain SI115 plasmid pSI115-1, complete sequence 0 crisprs csa3 0 0 1 0
NZ_CP050762 Salmonella enterica subsp. enterica serovar Indiana strain SI115 chromosome, complete genome 4 crisprs PD-DExK,DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG 0 20 9 0

Results visualization

1. NZ_CP050763
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 90106 : 148790 59 Escherichia_phage(29.41%) protease,transposase,integrase attL 84753:84766|attR 93591:93604

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP050762
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050762_1 584916-585016 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050762_2 960850-961916 TypeI-E I-E
17 spacers
cas3,cas8e,cse2gr11,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050762_3 978457-979522 TypeI-E I-E
17 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050762_4 3620079-3620161 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050762_3 3.8|978913|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978913-978944 32 NZ_CP026270 Klebsiella oxytoca strain KONIH4 plasmid unnamed, complete sequence 39148-39179 1 0.969
NZ_CP050762_4 4.1|3620107|27|NZ_CP050762|CRISPRCasFinder 3620107-3620133 27 MN013086 Klebsiella phage vB_Kpn_Chronis, complete genome 33543-33569 1 0.963
NZ_CP050762_4 4.1|3620107|27|NZ_CP050762|CRISPRCasFinder 3620107-3620133 27 NZ_LR134256 Klebsiella aerogenes strain NCTC9644 plasmid 3, complete sequence 1565-1591 1 0.963
NZ_CP050762_3 3.1|978486|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978486-978517 32 CP051275 Salmonella phage SW-37, complete genome 23580-23611 2 0.938
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 MT374854 Yersinia phage vB_YpM_6, complete genome 10937-10968 3 0.906
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 MT374853 Yersinia phage vB_YpM_5, complete genome 12313-12344 3 0.906
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 AF083977 Bacteriophage Mu, complete genome 7597-7628 3 0.906
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 M64097 Bacteriophage Mu left end 7595-7626 3 0.906
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 NC_000929 Enterobacteria phage Mu, complete genome 7597-7628 3 0.906
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 NC_013594 Escherichia phage D108, complete genome 7557-7588 4 0.875
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 KP010268 Enterobacteria phage SfMu, complete genome 8083-8114 4 0.875
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 LR595867 Escherichia virus Mu_3F6 genome assembly, chromosome: 1 7716-7747 4 0.875
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 MT374852 Yersinia phage vB_YpM_3, complete genome 7747-7778 4 0.875
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 MT374856 Yersinia phage vB_YpM_23, complete genome 11649-11680 4 0.875
NZ_CP050762_2 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960879-960910 32 MT591577 Yersinia phage vB_YpM_Tongde, complete genome 29404-29435 4 0.875
NZ_CP050762_2 2.2|960940|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960940-960971 32 NZ_CP054618 Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence 119595-119626 5 0.844
NZ_CP050762_4 4.1|3620107|27|NZ_CP050762|CRISPRCasFinder 3620107-3620133 27 NC_017077 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC7, complete sequence 20760-20786 5 0.815
NZ_CP050762_3 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978852-978883 32 CP053333 Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence 113183-113214 6 0.812
NZ_CP050762_3 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978852-978883 32 CP053333 Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence 120706-120737 6 0.812
NZ_CP050762_3 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978852-978883 32 NZ_CP022660 Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence 68243-68274 6 0.812
NZ_CP050762_3 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978852-978883 32 NZ_CP045061 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence 68247-68278 6 0.812
NZ_CP050762_3 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978852-978883 32 NZ_CP045054 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence 68254-68285 6 0.812
NZ_CP050762_3 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978852-978883 32 NZ_CP045058 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence 68253-68284 6 0.812
NZ_CP050762_2 2.2|960940|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960940-960971 32 NZ_CP011808 Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence 305581-305612 7 0.781
NZ_CP050762_2 2.5|961123|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961123-961154 32 MT162468 Synechococcus phage S-H25, complete genome 90729-90760 7 0.781
NZ_CP050762_2 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961429-961460 32 NZ_LR594663 Variovorax sp. RA8 plasmid 2 279825-279856 7 0.781
NZ_CP050762_3 3.15|979340|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 979340-979371 32 NZ_CP023073 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence 24323-24354 7 0.781
NZ_CP050762_2 2.7|961245|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961245-961276 32 MN693323 Marine virus AFVG_25M87, complete genome 37357-37388 8 0.75
NZ_CP050762_2 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961429-961460 32 MT108725 Pseudomonas phage Epa5, complete genome 54783-54814 8 0.75
NZ_CP050762_2 2.12|961551|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961551-961582 32 NZ_CP049914 Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence 234396-234427 8 0.75
NZ_CP050762_2 2.12|961551|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961551-961582 32 NC_018688 Bacillus thuringiensis MC28 plasmid pMC319, complete sequence 85616-85647 8 0.75
NZ_CP050762_3 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978852-978883 32 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 1326101-1326132 8 0.75
NZ_CP050762_3 3.10|979035|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 979035-979066 32 MN908689 Arthrobacter phage DrSierra, complete genome 14906-14937 8 0.75
NZ_CP050762_3 3.16|979401|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 979401-979432 32 NZ_CP026096 Bacillus asahii strain OM18 plasmid pOM18, complete sequence 34073-34104 8 0.75
NZ_CP050762_2 2.2|960940|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960940-960971 32 NC_013859 Azospirillum sp. B510 plasmid pAB510e, complete sequence 345226-345257 9 0.719
NZ_CP050762_2 2.2|960940|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 960940-960971 32 NC_013858 Azospirillum sp. B510 plasmid pAB510d, complete sequence 476514-476545 9 0.719
NZ_CP050762_2 2.3|961001|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961001-961032 32 JN672684 Enterobacteria phage F20, partial genome 14629-14660 9 0.719
NZ_CP050762_2 2.9|961368|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961368-961399 32 KM507819 Escherichia phage 121Q, complete genome 157385-157416 9 0.719
NZ_CP050762_2 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961429-961460 32 NZ_CP038392 Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-4, complete sequence 49-80 9 0.719
NZ_CP050762_2 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961429-961460 32 NZ_CP027439 Escherichia coli strain 2012C-4221 plasmid unnamed2, complete sequence 13856-13887 9 0.719
NZ_CP050762_2 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961429-961460 32 MT108731 Pseudomonas phage Epa43, complete genome 17620-17651 9 0.719
NZ_CP050762_3 3.6|978791|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 978791-978822 32 NZ_CP017782 Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence 203266-203297 9 0.719
NZ_CP050762_3 3.11|979096|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 979096-979127 32 NZ_CP013345 Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence 247366-247397 9 0.719
NZ_CP050762_2 2.9|961368|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961368-961399 32 NC_028822 Escherichia phage P483, complete genome 30079-30110 10 0.688
NZ_CP050762_2 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961673-961704 32 NZ_CP046164 Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence 362233-362264 10 0.688
NZ_CP050762_2 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961673-961704 32 NZ_CP046067 Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence 110732-110763 10 0.688
NZ_CP050762_2 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961673-961704 32 NZ_CP009266 Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence 36435-36466 10 0.688
NZ_CP050762_2 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961673-961704 32 NZ_CP045357 Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence 217923-217954 10 0.688
NZ_CP050762_2 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 961673-961704 32 MN693596 Marine virus AFVG_25M324, complete genome 45600-45631 10 0.688
NZ_CP050762_3 3.12|979157|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 979157-979188 32 NZ_CP030922 Escherichia coli strain KL53 plasmid pKL53-S, complete sequence 29059-29090 11 0.656
NZ_CP050762_3 3.12|979157|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 979157-979188 32 NZ_CP042584 Escherichia coli strain LD91-1 plasmid pLD91-1-76kb, complete sequence 20787-20818 11 0.656
NZ_CP050762_3 3.14|979279|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT 979279-979310 32 NZ_CP051164 Geobacillus subterraneus strain CPW16 plasmid pBsrF30, complete sequence 7333-7364 11 0.656

1. spacer 3.8|978913|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026270 (Klebsiella oxytoca strain KONIH4 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969 

agtgtccacactgcggcgctgaaaaatgcaac	CRISPR spacer
agtgtccgcactgcggcgctgaaaaatgcaac	Protospacer
*******.************************

2. spacer 4.1|3620107|27|NZ_CP050762|CRISPRCasFinder matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 1, identity: 0.963 

ctccacctccgcaggcattggtacgac	CRISPR spacer
atccacctccgcaggcattggtacgac	Protospacer
 **************************

3. spacer 4.1|3620107|27|NZ_CP050762|CRISPRCasFinder matches to NZ_LR134256 (Klebsiella aerogenes strain NCTC9644 plasmid 3, complete sequence) position: , mismatch: 1, identity: 0.963 

ctccacctccgcaggcattggtacgac	CRISPR spacer
ctccacctccgcaggcattggtactac	Protospacer
************************ **

4. spacer 3.1|978486|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 2, identity: 0.938 

agcacacattgtgtgacggtcgccgtctggtt	CRISPR spacer
aacacacattgtgcgacggtcgccgtctggtt	Protospacer
*.***********.******************

5. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MT374854 (Yersinia phage vB_YpM_6, complete genome) position: , mismatch: 3, identity: 0.906 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgtaaccactgcgatatgggcgatgacacggc	Protospacer
*****************************..

6. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MT374853 (Yersinia phage vB_YpM_5, complete genome) position: , mismatch: 3, identity: 0.906 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgtaaccactgcgatatgggcgatgacacggc	Protospacer
*****************************..

7. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to AF083977 (Bacteriophage Mu, complete genome) position: , mismatch: 3, identity: 0.906 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacagc	Protospacer
**.***************************.

8. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to M64097 (Bacteriophage Mu left end) position: , mismatch: 3, identity: 0.906 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacagc	Protospacer
**.***************************.

9. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NC_000929 (Enterobacteria phage Mu, complete genome) position: , mismatch: 3, identity: 0.906 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacagc	Protospacer
**.***************************.

10. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NC_013594 (Escherichia phage D108, complete genome) position: , mismatch: 4, identity: 0.875 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

11. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to KP010268 (Enterobacteria phage SfMu, complete genome) position: , mismatch: 4, identity: 0.875 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

12. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to LR595867 (Escherichia virus Mu_3F6 genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.875 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

13. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 4, identity: 0.875 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

14. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MT374856 (Yersinia phage vB_YpM_23, complete genome) position: , mismatch: 4, identity: 0.875 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

15. spacer 2.1|960879|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MT591577 (Yersinia phage vB_YpM_Tongde, complete genome) position: , mismatch: 4, identity: 0.875 

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

16. spacer 2.2|960940|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844 

cgggaagcgcagcagaacgcccggtcgcagcg-	CRISPR spacer
cgcgaaccgcagcagaacgcccgg-cgcttcgg	Protospacer
** *** ***************** ***  **

17. spacer 4.1|3620107|27|NZ_CP050762|CRISPRCasFinder matches to NC_017077 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC7, complete sequence) position: , mismatch: 5, identity: 0.815 

ctccacctccgcaggcattggtacgac	CRISPR spacer
tggcacctccgcaggcattggtgcggc	Protospacer
.  *******************.**.*

18. spacer 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to CP053333 (Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812 

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

19. spacer 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to CP053333 (Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812 

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

20. spacer 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 6, identity: 0.812 

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

21. spacer 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 6, identity: 0.812 

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

22. spacer 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 6, identity: 0.812 

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

23. spacer 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 6, identity: 0.812 

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

24. spacer 2.2|960940|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 7, identity: 0.781 

cgggaagcgcagcagaacgcccggtcgcagcg	CRISPR spacer
ttgtccgcgcagcagatcccccggtcgcagcg	Protospacer
. *   ********** * *************

25. spacer 2.5|961123|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 7, identity: 0.781 

acgatccagatatttggctggatgcaatcggt-	CRISPR spacer
ccgatccagatattatgctggatg-gattgtta	Protospacer
 *************  ******** .**.* *

26. spacer 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 7, identity: 0.781 

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
acgtggtggagatcggcaacgaacgcaagtac	Protospacer
 *** *   *** ************** ****

27. spacer 3.15|979340|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023073 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence) position: , mismatch: 7, identity: 0.781 

tttgaaatcgctattcttattgctgtagcagt	CRISPR spacer
ttcgccgtcgctgtttttattgctgtagcact	Protospacer
**.*  .*****.**.************** *

28. spacer 2.7|961245|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MN693323 (Marine virus AFVG_25M87, complete genome) position: , mismatch: 8, identity: 0.75 

gcttttatgtctggtggatataacgcactgaa	CRISPR spacer
gctcttatggctggtggatataatggatcaac	Protospacer
***.***** *************.* *...*

29. spacer 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MT108725 (Pseudomonas phage Epa5, complete genome) position: , mismatch: 8, identity: 0.75 

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
acgtcgatcggaacggcaacgaactgaccttg	Protospacer
 ***.****.**************  ** *

30. spacer 2.12|961551|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

----ccatttttgatcatctcctccagcctgctgag	CRISPR spacer
ggtaaca----cgatcgtctcttccagcctgctgag	Protospacer
     **    .****.****.**************

31. spacer 2.12|961551|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 8, identity: 0.75 

ccatttttgatcatctcctccagcctgctgag	CRISPR spacer
taatttttgttcatctcttccagccttatcat	Protospacer
. ******* *******.********  * *

32. spacer 3.7|978852|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.75 

agcgcgtcaggaacgtttctggggtggcctga	CRISPR spacer
cgcgcgtcaggatcgttcctggggctgggcga	Protospacer
 *********** ****.******. *  .**

33. spacer 3.10|979035|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MN908689 (Arthrobacter phage DrSierra, complete genome) position: , mismatch: 8, identity: 0.75 

---ttcggagtccggatcatcattcaggataacga	CRISPR spacer
gagctc---gtccggatcagcattcaggacaaccc	Protospacer
   .**   ********** *********.***

34. spacer 3.16|979401|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026096 (Bacillus asahii strain OM18 plasmid pOM18, complete sequence) position: , mismatch: 8, identity: 0.75 

cgttaa--ctaaaacgaacaaaacagggaaatca	CRISPR spacer
--ttgattctaaaacgaaaaaaacaggtaaactg	Protospacer
  **.*  ********** ******** ***...

35. spacer 2.2|960940|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.719 

cgggaagcgcagcagaacgcccggtcgcagcg	CRISPR spacer
cgggaagcccagcagcacgcccgaacaggcgg	Protospacer
******** ****** *******. *. .  *

36. spacer 2.2|960940|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 9, identity: 0.719 

cgggaagcgcagcagaacgcccggtcgcagcg	CRISPR spacer
cgggaagcccagcagcacgcccgaacaggcgg	Protospacer
******** ****** *******. *. .  *

37. spacer 2.3|961001|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to JN672684 (Enterobacteria phage F20, partial genome) position: , mismatch: 9, identity: 0.719 

atcaccggcacgcgcgataacgggtctgatta	CRISPR spacer
aagcaggtgacgcgggataacgggtatgatta	Protospacer
*     *  ***** ********** ******

38. spacer 2.9|961368|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 9, identity: 0.719 

cgtatcccgaaatcacgttcaagaaaaatccg	CRISPR spacer
tgcactgagaaatcaagttcaagaaaaaaccc	Protospacer
.*.*..  ******* ************ **

39. spacer 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038392 (Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-4, complete sequence) position: , mismatch: 9, identity: 0.719 

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
tcgttgatcagaacgggaaggaactggcccgc	Protospacer
.*************** ** ****  .* ..*

40. spacer 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027439 (Escherichia coli strain 2012C-4221 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719 

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
tcgttgatcagaacgggaaggaactggcccgc	Protospacer
.*************** ** ****  .* ..*

41. spacer 2.10|961429|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MT108731 (Pseudomonas phage Epa43, complete genome) position: , mismatch: 9, identity: 0.719 

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
acgtcgatcggaacggcaacgaactgaccctg	Protospacer
 ***.****.**************  ** .

42. spacer 3.6|978791|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017782 (Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence) position: , mismatch: 9, identity: 0.719 

ggtgttactgatggtggggcgctggatgaggc	CRISPR spacer
aggatgcgcgagggtcgggcgctggatgaggc	Protospacer
.* .*   .** *** ****************

43. spacer 3.11|979096|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

aaatcgcgcggcgatcgactcaaggcggcgac-	CRISPR spacer
gtggcgcgcggcgatcgcctcgaggc-gcgctg	Protospacer
. . ************* ***.**** *** .

44. spacer 2.9|961368|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NC_028822 (Escherichia phage P483, complete genome) position: , mismatch: 10, identity: 0.688 

cgtatcccgaaatcacgttcaagaaaaatccg	CRISPR spacer
ccatcatggaaatcacattcaagacaaatcca	Protospacer
*   . . ********.******* ******.

45. spacer 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046164 (Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence) position: , mismatch: 10, identity: 0.688 

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
ccgtagccaatatcagtgaagatgccaaagct	Protospacer
 .  *.. ***** ******** ********.

46. spacer 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046067 (Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence) position: , mismatch: 10, identity: 0.688 

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
ccgtagccaatatcagtgaagatgccaaagct	Protospacer
 .  *.. ***** ******** ********.

47. spacer 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009266 (Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence) position: , mismatch: 10, identity: 0.688 

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
ccgtagccaatatcagtgaagatgccaaagct	Protospacer
 .  *.. ***** ******** ********.

48. spacer 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045357 (Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence) position: , mismatch: 10, identity: 0.688 

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
ccgtagccaatatcagtgaagatgccaaagct	Protospacer
 .  *.. ***** ******** ********.

49. spacer 2.14|961673|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to MN693596 (Marine virus AFVG_25M324, complete genome) position: , mismatch: 10, identity: 0.688 

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
taggagcaaaaatgagtgaagaagcaaaagag	Protospacer
   .*..*** ************** ****

50. spacer 3.12|979157|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030922 (Escherichia coli strain KL53 plasmid pKL53-S, complete sequence) position: , mismatch: 11, identity: 0.656 

aaaatcgtgagtgactatcgttctgttattgc	CRISPR spacer
ttgatcgtcagtgactatggttctgtctcaaa	Protospacer
  .***** ********* *******. . .

51. spacer 3.12|979157|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042584 (Escherichia coli strain LD91-1 plasmid pLD91-1-76kb, complete sequence) position: , mismatch: 11, identity: 0.656 

aaaatcgtgagtgactatcgttctgttattgc	CRISPR spacer
ttgatcgtcagtgactatggttctgtctcaaa	Protospacer
  .***** ********* *******. . .

52. spacer 3.14|979279|32|NZ_CP050762|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051164 (Geobacillus subterraneus strain CPW16 plasmid pBsrF30, complete sequence) position: , mismatch: 11, identity: 0.656 

tggccggggaaacaaggaaagtcctggttttt	CRISPR spacer
gatttagggaaacaaagaaagtcctgattaaa	Protospacer
 . ...*********.**********.**

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 647276 : 683917 45 Cronobacter_phage(70.27%) portal,head,integrase,tRNA,tail,terminase,holin,capsid attL 637145:637166|attR 686226:686247
DBSCAN-SWA_2 1179767 : 1261068 82 Cronobacter_phage(51.22%) portal,tRNA,integrase,head,tail,terminase,holin,capsid attL 1187744:1187759|attR 1215434:1215449
DBSCAN-SWA_3 1711225 : 1720396 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_4 1799428 : 1809935 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_5 1920056 : 1931346 12 Burkholderia_phage(25.0%) integrase attL 1914310:1914325|attR 1928657:1928672
DBSCAN-SWA_6 2112095 : 2151251 30 Shigella_phage(37.5%) protease,integrase,transposase attL 2128532:2128548|attR 2143119:2143135
DBSCAN-SWA_7 2245583 : 2251395 8 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_8 2714492 : 2721955 8 Escherichia_phage(42.86%) transposase NA
DBSCAN-SWA_9 3546379 : 3636319 131 Enterobacteria_phage(46.34%) holin,integrase,plate,protease,tail,lysis,terminase,coat,portal attL 3546046:3546091|attR 3632428:3632473

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage