CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP050840	Klebsiella pneumoniae strain Bckp101 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,DinG,RT,WYL	1	6
NZ_CP050841	Klebsiella pneumoniae strain Bckp101 plasmid pBckp101-1, complete sequence	0 crisprs	csa3	0	0
NZ_CP050842	Klebsiella pneumoniae strain Bckp101 plasmid pBckp101-2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050840_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050840_1

3621796-3621878

Orphan

Consensus_repeat	Method
GGCGGCTGACGCCTTGCCCGGCCTACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050840_1

>merge|NZ_CP050840|1|3621796-3621878|CRISPRCasFinder
GGCGGCTGACGCCTTGCCCGGCCTACGGTGCTATTGCGCGATTATTTTGCCGGGTGGCGGCTGACGCCTTACCCGGCCTACGG

>NZ_CP050840|1|1|3621796-3621878|CRISPRCasFinder
GGCGGCTGACGCCTTGCCCGGCCTACGG	TGCTATTGCGCGATTATTTTGCCGGGT
GGCGGCTGACGCCTTACCCGGCCTACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050840.1\|WP_072157839.1\|3628969_3630289_-\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP050840.1\|WP_108978782.1\|3619796_3621086_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP050840.1\|WP_020804491.1\|3623875_3625402_-\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP050840.1\|WP_004152853.1\|3615270_3615993_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP050840.1\|WP_004179093.1\|3611192_3612290_+\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP050840.1\|WP_004147672.1\|3622394_3623777_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP050840.1\|WP_004142122.1\|3630443_3631727_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP050840.1\|WP_002895580.1\|3618542_3619583_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP050840.1\|WP_167835184.1\|3635704_3636790_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP050840.1\|WP_108978781.1\|3617388_3618546_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP050840.1\|WP_002895648.1\|3615934_3616657_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP050840.1\|WP_020316497.1\|3632000_3634688_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP050840.1\|WP_004893301.1\|3616649_3617405_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP050840.1\|WP_014342949.1\|3625398_3626337_-\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP050840.1\|WP_004147678.1\|3612538_3614560_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP050840.1\|WP_002895358.1\|3627229_3627955_-\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP050840.1\|WP_002895652.1\|3614971_3615184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050840.1\|WP_108978754.1\|3628016_3628973_-\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP050840.1\|WP_002895575.1\|3621156_3621633_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP050840.1\|WP_004183465.1\|3634739_3635171_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185353

Protein	Function_ID	Function_description	E-value
NZ_CP050840.1\|WP_072157839.1\|3628969_3630289_-\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP050840.1\|WP_108978782.1\|3619796_3621086_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP050840.1\|WP_020804491.1\|3623875_3625402_-\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP050840.1\|WP_004179093.1\|3611192_3612290_+\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP050840.1\|WP_004152853.1\|3615270_3615993_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP050840.1\|WP_004147672.1\|3622394_3623777_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP050840.1\|WP_004142122.1\|3630443_3631727_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP050840.1\|WP_002895580.1\|3618542_3619583_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP050840.1\|WP_108978781.1\|3617388_3618546_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP050840.1\|WP_002895648.1\|3615934_3616657_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP050840.1\|WP_020316497.1\|3632000_3634688_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP050840.1\|WP_004893301.1\|3616649_3617405_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.45632e-160
NZ_CP050840.1\|WP_014342949.1\|3625398_3626337_-\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP050840.1\|WP_004147678.1\|3612538_3614560_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP050840.1\|WP_167835184.1\|3635704_3636790_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.3701e-66
NZ_CP050840.1\|WP_002895358.1\|3627229_3627955_-\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP050840.1\|WP_108978754.1\|3628016_3628973_-\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	1.8028e-177
NZ_CP050840.1\|WP_002895575.1\|3621156_3621633_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP050840.1\|WP_004183465.1\|3634739_3635171_-\|universal-stress-protein	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	1.69931e-44

>NZ_CP050840.1|WP_002895575.1|3621156_3621633_+|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP050840.1|WP_108978782.1|3619796_3621086_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGHTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP050840.1|WP_002895580.1|3618542_3619583_-|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP050840.1|WP_108978781.1|3617388_3618546_-|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQVVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHTEDINRLLEVLHGHSE
>NZ_CP050840.1|WP_004893301.1|3616649_3617405_-|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTVAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP050840.1|WP_002895648.1|3615934_3616657_-|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP050840.1|WP_004152853.1|3615270_3615993_+|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP050840.1|WP_002895652.1|3614971_3615184_+|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP050840.1|WP_004147678.1|3612538_3614560_-|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKVVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP050840.1|WP_004179093.1|3611192_3612290_+|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENETVVSGDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH
>NZ_CP050840.1|WP_004147672.1|3622394_3623777_-|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP050840.1|WP_020804491.1|3623875_3625402_-|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTEDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP050840.1|WP_014342949.1|3625398_3626337_-|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP050840.1|WP_002895358.1|3627229_3627955_-|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP050840.1|WP_108978754.1|3628016_3628973_-|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPETLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVLLATLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARTAARLAWQIAHWWR
>NZ_CP050840.1|WP_072157839.1|3628969_3630289_-|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLAVAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDANGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP050840.1|WP_004142122.1|3630443_3631727_+|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP050840.1|WP_020316497.1|3632000_3634688_-|cation-transporting-P-type-ATPase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGNTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEPVGKIHAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLVLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>NZ_CP050840.1|WP_004183465.1|3634739_3635171_-|universal-stress-protein
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALADELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>NZ_CP050840.1|WP_167835184.1|3635704_3636790_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNRYFSLIPVVIIFTTACDQKAPTVESAPRMVKVAQVTAVGNTQQRTFPARIESGDSTELSFKRGGQVESLDIRQGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQAISQAEMDVQRANRDAANAALKIAREELAQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAYRPVVRVNTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRPDDFPAVGGVSGTVTVNLGNLPASAGRETLIVPAEAVFNPDNRPKNEPVVWVVKGDNAHRYLEERKVTVGEVTSQGVAITDGLRAGEQVVAAGVSELHAGQPVRVWTRERGL

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Crispr_ID: NZ_CP050840_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050840_2

4260018-4260157

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050840_2

>merge|NZ_CP050840|2|4260018-4260157|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

>NZ_CP050840|2|2|4260018-4260157|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050840.1\|WP_032419619.1\|4259101_4259962_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176522
NZ_CP050840.1\|WP_004213891.1\|4252631_4253324_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_CP050840.1\|WP_002889722.1\|4260184_4260400_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP050840.1\|WP_002889699.1\|4266656_4267397_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP050840.1\|WP_011977690.1\|4249752_4251036_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
NZ_CP050840.1\|WP_002889696.1\|4267367_4268135_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP050840.1\|WP_004147186.1\|4263659_4264898_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP050840.1\|WP_004145818.1\|4257431_4257884_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP050840.1\|WP_108978579.1\|4255931_4257389_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP050840.1\|WP_114670222.1\|4264901_4266245_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP050840.1\|WP_004177335.1\|4261638_4262235_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP050840.1\|WP_002889716.1\|4262241_4262880_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP050840.1\|WP_004177336.1\|4262872_4263667_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP050840.1\|WP_004145825.1\|4268209_4268791_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP050840.1\|WP_004177332.1\|4253409_4253808_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP050840.1\|WP_108978578.1\|4257886_4258942_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP050840.1\|WP_002889733.1\|4255215_4255674_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP050840.1\|WP_115658023.1\|4251185_4252586_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_CP050840.1\|WP_002889720.1\|4260402_4261626_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP050840.1\|WP_108978580.1\|4253865_4255110_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337

Protein	Function_ID	Function_description	E-value
NZ_CP050840.1\|WP_032419619.1\|4259101_4259962_+\|hypothetical-protein	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	6.14578e-130
NZ_CP050840.1\|WP_004213891.1\|4252631_4253324_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	2.66819e-151
NZ_CP050840.1\|WP_002889722.1\|4260184_4260400_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
NZ_CP050840.1\|WP_002889699.1\|4266656_4267397_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_CP050840.1\|WP_011977690.1\|4249752_4251036_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP050840.1\|WP_002889696.1\|4267367_4268135_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_CP050840.1\|WP_004147186.1\|4263659_4264898_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP050840.1\|WP_004145818.1\|4257431_4257884_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	1.30309e-85
NZ_CP050840.1\|WP_108978579.1\|4255931_4257389_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP050840.1\|WP_114670222.1\|4264901_4266245_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP050840.1\|WP_004177335.1\|4261638_4262235_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_CP050840.1\|WP_002889716.1\|4262241_4262880_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_CP050840.1\|WP_004177336.1\|4262872_4263667_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_CP050840.1\|WP_004145825.1\|4268209_4268791_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_CP050840.1\|WP_004177332.1\|4253409_4253808_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
NZ_CP050840.1\|WP_108978578.1\|4257886_4258942_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP050840.1\|WP_002889733.1\|4255215_4255674_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP050840.1\|WP_115658023.1\|4251185_4252586_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_CP050840.1\|WP_002889720.1\|4260402_4261626_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP050840.1\|WP_108978580.1\|4253865_4255110_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0

>NZ_CP050840.1|WP_032419619.1|4259101_4259962_+|hypothetical-protein
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAKELGADGVMVDSPAQAKSWQ
>NZ_CP050840.1|WP_108978578.1|4257886_4258942_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHRAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP050840.1|WP_004145818.1|4257431_4257884_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCAQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>NZ_CP050840.1|WP_108978579.1|4255931_4257389_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHSDELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLLEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP050840.1|WP_002889733.1|4255215_4255674_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP050840.1|WP_108978580.1|4253865_4255110_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYCNFDHALRQIARWINHRFG
>NZ_CP050840.1|WP_004177332.1|4253409_4253808_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP050840.1|WP_004213891.1|4252631_4253324_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_CP050840.1|WP_115658023.1|4251185_4252586_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVIALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>NZ_CP050840.1|WP_011977690.1|4249752_4251036_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDHSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>NZ_CP050840.1|WP_002889722.1|4260184_4260400_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP050840.1|WP_002889720.1|4260402_4261626_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP050840.1|WP_004177335.1|4261638_4262235_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP050840.1|WP_002889716.1|4262241_4262880_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP050840.1|WP_004177336.1|4262872_4263667_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP050840.1|WP_004147186.1|4263659_4264898_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP050840.1|WP_114670222.1|4264901_4266245_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSDGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERVIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP050840.1|WP_002889699.1|4266656_4267397_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP050840.1|WP_002889696.1|4267367_4268135_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_CP050840.1|WP_004145825.1|4268209_4268791_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP050840_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050840_3

4477039-4477133

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050840_3

>merge|NZ_CP050840|3|4477039-4477133|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP050840|3|3|4477039-4477133|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050840.1\|WP_012737387.1\|4480691_4483040_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP050840.1\|WP_048291933.1\|4474132_4474792_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP050840.1\|WP_002888320.1\|4487679_4488159_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP050840.1\|WP_002888321.1\|4486578_4487427_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP050840.1\|WP_004222649.1\|4468668_4471026_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP050840.1\|WP_002888353.1\|4467797_4468493_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP050840.1\|WP_004177430.1\|4484386_4485376_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP050840.1\|WP_002888323.1\|4486196_4486574_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP050840.1\|WP_004177424.1\|4466157_4467660_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP050840.1\|WP_004145972.1\|4463254_4464100_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP050840.1\|WP_004182906.1\|4478889_4479588_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP050840.1\|WP_002888324.1\|4485372_4486194_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP050840.1\|WP_012737392.1\|4464437_4466147_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP050840.1\|WP_021469674.1\|4483094_4484381_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP050840.1\|WP_004192048.1\|4477274_4478900_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP050840.1\|WP_004178574.1\|4471213_4474120_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP050840.1\|WP_031592062.1\|4475585_4476950_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP050840.1\|WP_002888347.1\|4474866_4475406_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP050840.1\|WP_002888332.1\|4479620_4480448_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP050840.1\|WP_004219851.1\|4464085_4464256_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP050840.1\|WP_012737387.1\|4480691_4483040_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP050840.1\|WP_048291933.1\|4474132_4474792_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.83616e-160
NZ_CP050840.1\|WP_002888320.1\|4487679_4488159_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP050840.1\|WP_002888321.1\|4486578_4487427_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP050840.1\|WP_004222649.1\|4468668_4471026_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP050840.1\|WP_002888353.1\|4467797_4468493_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP050840.1\|WP_004177430.1\|4484386_4485376_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP050840.1\|WP_002888323.1\|4486196_4486574_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP050840.1\|WP_004177424.1\|4466157_4467660_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP050840.1\|WP_004145972.1\|4463254_4464100_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP050840.1\|WP_004192048.1\|4477274_4478900_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	7.63459e-173
NZ_CP050840.1\|WP_002888324.1\|4485372_4486194_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP050840.1\|WP_012737392.1\|4464437_4466147_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP050840.1\|WP_021469674.1\|4483094_4484381_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP050840.1\|WP_004182906.1\|4478889_4479588_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.65624e-65
NZ_CP050840.1\|WP_004178574.1\|4471213_4474120_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP050840.1\|WP_031592062.1\|4475585_4476950_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	1.3077e-169
NZ_CP050840.1\|WP_002888347.1\|4474866_4475406_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP050840.1\|WP_002888332.1\|4479620_4480448_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164

>NZ_CP050840.1|WP_031592062.1|4475585_4476950_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLTNVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP050840.1|WP_002888347.1|4474866_4475406_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP050840.1|WP_048291933.1|4474132_4474792_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVLLYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP050840.1|WP_004178574.1|4471213_4474120_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP050840.1|WP_004222649.1|4468668_4471026_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP050840.1|WP_002888353.1|4467797_4468493_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP050840.1|WP_004177424.1|4466157_4467660_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP050840.1|WP_012737392.1|4464437_4466147_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP050840.1|WP_004219851.1|4464085_4464256_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP050840.1|WP_004145972.1|4463254_4464100_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP050840.1|WP_004192048.1|4477274_4478900_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP050840.1|WP_004182906.1|4478889_4479588_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP050840.1|WP_002888332.1|4479620_4480448_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP050840.1|WP_012737387.1|4480691_4483040_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNDWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP050840.1|WP_021469674.1|4483094_4484381_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKVSDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP050840.1|WP_004177430.1|4484386_4485376_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVALNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP050840.1|WP_002888324.1|4485372_4486194_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP050840.1|WP_002888323.1|4486196_4486574_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP050840.1|WP_002888321.1|4486578_4487427_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP050840.1|WP_002888320.1|4487679_4488159_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP050840_1	1.1\|3621824\|27\|NZ_CP050840\|CRISPRCasFinder	3621824-3621850	27	NZ_CP015439	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence	57276-57302	5	0.815

1. spacer 1.1|3621824|27|NZ_CP050840|CRISPRCasFinder matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 5, identity: 0.815

tgctattgcgcgattattttgccgggt	CRISPR spacer
agctattgcgcgactatgttgccgtgc	Protospacer
 ************.*** ****** *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1704592 : 1711509

Planktothrix_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108978589.1\|1704592_1705456_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_094645090.1\|1705466_1706240_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-25	36.3
WP_004151134.1\|1706480_1707377_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1707619_1708981_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004890796.1\|1709299_1710022_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_040213933.1\|1710018_1711509_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_2

2695671 : 2706558

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167835148.1\|2695671_2698779_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_109013615.1\|2698833_2700099_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2700129_2701218_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_167835149.1\|2701304_2701565_-	hypothetical protein	A0A077SK33	Escherichia_phage	2.1e-40	97.7
WP_063864611.1\|2701862_2702723_+	class A beta-lactamase SHV-108	A0A077SL40	Escherichia_phage	1.1e-154	99.0
WP_002210513.1\|2702743_2703505_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|2703765_2704668_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004190239.1\|2704679_2705945_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
WP_002210516.1\|2705937_2706558_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_3

2872885 : 2926833

Escherichia_phage(37.5%)

plate,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002902422.1\|2872885_2873821_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.5e-138	93.0
WP_040167441.1\|2873866_2875240_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.6e-53	32.3
WP_004148192.1\|2875765_2876749_-	zinc transporter ZntB	NA	NA	NA	NA
WP_070985076.1\|2877027_2877771_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.7e-15	30.1
WP_020324627.1\|2877733_2878852_+	oxidoreductase	NA	NA	NA	NA
WP_004176404.1\|2879088_2879283_+	hypothetical protein	NA	NA	NA	NA
WP_002902411.1\|2879395_2880142_-	hypothetical protein	NA	NA	NA	NA
WP_002902408.1\|2880392_2881772_-	amino acid permease	NA	NA	NA	NA
WP_002902405.1\|2882106_2882586_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_002902402.1\|2882837_2883452_+	YitT family protein	NA	NA	NA	NA
WP_048989953.1\|2883490_2884690_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_004224411.1\|2884718_2885387_-	ABC transporter permease	NA	NA	NA	NA
WP_040182726.1\|2885379_2886393_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.7e-29	39.1
WP_014907702.1\|2886401_2887208_-	methionine-binding protein	NA	NA	NA	NA
WP_004148182.1\|2887428_2888604_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_167835153.1\|2888648_2889683_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_016947226.1\|2889771_2890320_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032417074.1\|2890376_2891288_-	NmrA/HSCARG family protein	NA	NA	NA	NA
WP_108978952.1\|2891299_2892148_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_076978328.1\|2892847_2893162_+	hypothetical protein	NA	NA	NA	NA
WP_004190483.1\|2893181_2894087_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025368193.1\|2894227_2895157_+	aromatic alcohol reductase	NA	NA	NA	NA
WP_004212334.1\|2895182_2895389_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_004151595.1\|2895439_2896318_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004151596.1\|2896476_2897232_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_100111670.1\|2897236_2897830_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_009309031.1\|2897903_2898617_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_167835154.1\|2898683_2899178_-	hypothetical protein	NA	NA	NA	NA
WP_004176417.1\|2899304_2899847_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_060175754.1\|2899824_2900910_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004190505.1\|2900873_2902628_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_015874733.1\|2902704_2903175_-	hypothetical protein	NA	NA	NA	NA
WP_014907714.1\|2903171_2904227_-	hypothetical protein	NA	NA	NA	NA
WP_015874732.1\|2904257_2905856_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_167835155.1\|2905855_2909311_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_032430730.1\|2909307_2910516_-	hypothetical protein	NA	NA	NA	NA
WP_167835156.1\|2911784_2912855_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	3.3e-07	35.0
WP_086074293.1\|2912841_2913636_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	1.9e-07	30.4
WP_015874727.1\|2913686_2913878_-\|transposase	transposase	NA	NA	NA	NA
WP_015874726.1\|2913849_2913954_-\|transposase	transposase	NA	NA	NA	NA
WP_023157869.1\|2914122_2914644_-	hypothetical protein	NA	NA	NA	NA
WP_015874724.1\|2914640_2916563_-	LysM peptidoglycan-binding domain-containing protein	A0A0A7HER1	Arthrobacter_phage	1.7e-06	39.8
WP_064175886.1\|2916580_2916991_-	DUF4431 domain-containing protein	NA	NA	NA	NA
WP_087831527.1\|2919685_2922340_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	5.9e-98	33.4
WP_002902160.1\|2922604_2923096_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_108978996.1\|2923100_2924807_-	OmpA family protein	NA	NA	NA	NA
WP_004176431.1\|2924803_2925493_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_023282448.1\|2925489_2926833_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_4

3098949 : 3143459

Enterobacteria_phage(57.58%)

tRNA,head,tail,integrase,terminase,portal,plate,capsid

attL 3104177:3104194|attR 3139725:3139742

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3098949_3099450_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3099566_3100013_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|3099996_3100791_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_072200170.1\|3100898_3102074_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_108979155.1\|3102105_3102798_-	CTP synthase	NA	NA	NA	NA
WP_004176547.1\|3102943_3103453_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_167835256.1\|3103457_3103796_+	DUF488 family protein	NA	NA	NA	NA
WP_004179368.1\|3103785_3104025_-	DUF333 domain-containing protein	NA	NA	NA	NA
3104177:3104194	attL	NA	NA	NA	NA
WP_004213128.1\|3104289_3104541_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_167835160.1\|3104584_3105724_-	phage late control D family protein	B9A7A9	Serratia_phage	1.2e-143	70.2
WP_117053929.1\|3105878_3107051_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	2.1e-156	70.0
WP_009486472.1\|3107050_3107566_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.8e-57	61.2
WP_004131585.1\|3107611_3107929_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_032440702.1\|3107928_3108087_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
WP_167835161.1\|3108073_3111049_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.0e-220	46.7
WP_117074285.1\|3111063_3111555_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	3.3e-55	63.1
WP_117074295.1\|3111850_3113458_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_065520900.1\|3113650_3114748_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.6e-09	28.6
WP_065520901.1\|3114747_3114960_-	hypothetical protein	NA	NA	NA	NA
WP_167835162.1\|3114956_3117983_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_064182847.1\|3117972_3118896_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.8e-52	43.2
WP_004131573.1\|3118897_3119248_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	6.2e-24	59.3
WP_065520903.1\|3119244_3119832_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.4e-60	61.0
WP_065520904.1\|3119828_3120464_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	3.9e-56	51.9
WP_117074288.1\|3120460_3120928_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.1e-47	60.1
WP_167835163.1\|3121109_3121439_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_101869430.1\|3121450_3121996_-	lysozyme	Q1I0Z1	Pasteurella_virus	4.3e-32	44.1
WP_004213110.1\|3121992_3122277_-	hypothetical protein	NA	NA	NA	NA
WP_045854925.1\|3122267_3122468_-	LysM peptidoglycan-binding domain-containing protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	64.6
WP_048024509.1\|3122467_3122983_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.8e-40	50.0
WP_017898629.1\|3123087_3123954_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	5.8e-71	58.5
WP_020324085.1\|3124003_3125038_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	8.1e-96	50.0
WP_101869495.1\|3125048_3125888_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	9.5e-95	65.9
WP_167835257.1\|3126043_3127771_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	9.0e-233	68.1
WP_023328073.1\|3127764_3128826_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	4.8e-144	68.4
WP_048988076.1\|3129472_3130480_-	hypothetical protein	NA	NA	NA	NA
WP_060527943.1\|3130472_3132419_-	DUF3696 domain-containing protein	Q2P9X8	Enterobacteria_phage	5.2e-19	32.1
WP_048988072.1\|3134866_3135802_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	2.7e-82	55.4
WP_004131528.1\|3135798_3136026_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.9e-05	41.0
WP_038423226.1\|3136034_3136601_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	1.8e-12	32.1
WP_048988070.1\|3136597_3136822_-	hypothetical protein	NA	NA	NA	NA
WP_048988067.1\|3136889_3137162_-	hypothetical protein	NA	NA	NA	NA
WP_038423229.1\|3137177_3137555_-	hypothetical protein	NA	NA	NA	NA
WP_071889566.1\|3137570_3137789_-	DUF4761 domain-containing protein	A0A0M5M1I3	Salmonella_phage	4.7e-06	49.1
WP_020806130.1\|3137809_3138088_-	regulatory protein Cox	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
WP_038423230.1\|3138210_3138510_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	3.5e-36	71.7
WP_048988064.1\|3138625_3139609_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	5.4e-150	79.8
WP_004179366.1\|3139873_3140887_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
3139725:3139742	attR	NA	NA	NA	NA
WP_004150782.1\|3140944_3141046_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3141045_3141120_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3141237_3141363_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3141422_3141686_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3141816_3142455_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_008807690.1\|3142544_3143459_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	3.2e-72	50.0

DBSCAN-SWA_5

3163144 : 3218285

Klebsiella_phage(25.49%)

head,tail,integrase,portal,holin,terminase,protease,capsid

attL 3161301:3161315|attR 3218625:3218639

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3161301:3161315	attL	NA	NA	NA	NA
WP_004892953.1\|3163144_3163297_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_080835115.1\|3163488_3164073_+	hypothetical protein	NA	NA	NA	NA
WP_080835105.1\|3164283_3164955_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	5.3e-80	61.2
WP_131026365.1\|3165006_3165927_-	hypothetical protein	NA	NA	NA	NA
WP_080835099.1\|3166060_3167326_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.8e-209	83.8
WP_004179627.1\|3167327_3167747_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	58.3
WP_080835095.1\|3168032_3168512_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_142244434.1\|3168504_3169122_-	hypothetical protein	NA	NA	NA	NA
WP_167835165.1\|3169280_3169829_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	6.0e-90	95.0
WP_167835166.1\|3169919_3172376_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	6.3e-30	59.8
WP_060877036.1\|3172513_3173350_-	hypothetical protein	A0A0S1S106	Klebsiella_phage	4.9e-99	65.1
WP_167835167.1\|3173358_3176085_-	hypothetical protein	A0A0S1S5D9	Klebsiella_phage	9.2e-240	53.6
WP_167835168.1\|3176162_3179240_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	61.7
WP_025713372.1\|3179236_3179617_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.7e-57	79.4
WP_004864228.1\|3179629_3180106_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	4.8e-51	65.8
WP_004884312.1\|3180092_3180566_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.1e-55	62.7
WP_073900721.1\|3180587_3183974_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.9e-303	57.7
WP_016530182.1\|3184034_3184268_-	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_023317588.1\|3184341_3184647_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_167835169.1\|3184649_3185054_-\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	5.5e-32	55.4
WP_032412035.1\|3185084_3185789_-	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	9.5e-80	66.5
WP_065800435.1\|3185845_3186193_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	4.3e-33	64.6
WP_048323775.1\|3186189_3186639_-	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	4.3e-62	81.2
WP_072071528.1\|3186635_3186974_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.2e-37	67.0
WP_032734570.1\|3186986_3187319_-\|head,tail	phage gp6-like head-tail connector protein	Q6JIM5	Burkholderia_virus	8.8e-12	31.6
WP_048323772.1\|3187324_3187579_-	hypothetical protein	NA	NA	NA	NA
WP_042920261.1\|3187624_3188845_-\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	3.7e-140	64.0
WP_167835170.1\|3188854_3189562_-\|head,protease	HK97 family phage prohead protease	Q6JIM8	Burkholderia_virus	2.2e-68	63.5
WP_118280099.1\|3189537_3190857_-\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	1.9e-137	58.6
WP_025713389.1\|3190863_3192600_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	1.3e-138	45.3
WP_167835171.1\|3192553_3193018_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	4.8e-48	62.7
WP_040241924.1\|3193201_3193543_-	HNH endonuclease	K7P7P4	Enterobacteria_phage	5.4e-49	75.7
WP_038435248.1\|3193552_3193789_-	hypothetical protein	NA	NA	NA	NA
WP_107326648.1\|3194447_3194693_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.5e-34	96.3
WP_167835258.1\|3195978_3196338_-	hypothetical protein	NA	NA	NA	NA
WP_167835172.1\|3196648_3197017_-	TonB family protein	NA	NA	NA	NA
WP_040182765.1\|3197379_3197568_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	5.9e-21	89.1
WP_032436040.1\|3197518_3197794_-	hypothetical protein	G8C7W1	Escherichia_phage	2.4e-23	66.3
WP_032412824.1\|3197790_3198138_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.2e-35	71.3
WP_060876946.1\|3198134_3198674_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.7e-100	97.8
WP_024176410.1\|3198670_3198970_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_167835173.1\|3200312_3200468_-	DUF3927 family protein	A0A0A0YRI9	Escherichia_phage	8.0e-08	64.6
WP_032695796.1\|3200464_3200890_-	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	7.2e-59	83.7
WP_101998648.1\|3201575_3201755_-	hypothetical protein	NA	NA	NA	NA
WP_135711764.1\|3201933_3202785_+	hypothetical protein	C9E2Q0	Enterococcus_phage	3.0e-27	37.4
WP_101998650.1\|3202821_3203187_-	antitermination protein Q	K7PGW2	Enterobacterial_phage	2.1e-51	79.3
WP_117134701.1\|3203204_3204191_-	DUF968 domain-containing protein	Q8SBE5	Shigella_phage	1.4e-92	50.2
WP_167835174.1\|3204314_3205697_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	1.7e-104	48.4
WP_008806045.1\|3205684_3206143_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_167835175.1\|3206139_3207051_-	GntR family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	4.5e-50	78.2
WP_023322342.1\|3207040_3207220_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	5.6e-13	67.3
WP_117244504.1\|3207392_3207941_-	DNA-binding protein	A0A1C9II13	Salmonella_phage	9.3e-67	69.8
WP_167835176.1\|3208021_3208492_+	hypothetical protein	NA	NA	NA	NA
WP_023343174.1\|3208750_3208951_-	hypothetical protein	U5P445	Shigella_phage	4.3e-22	80.0
WP_008806042.1\|3209038_3209698_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	4.7e-113	86.3
WP_008806041.1\|3209990_3210464_-	hypothetical protein	NA	NA	NA	NA
WP_032429496.1\|3211391_3211763_+	hypothetical protein	Q8HAA1	Salmonella_phage	4.1e-50	79.5
WP_167835177.1\|3211815_3212646_+	YfdQ family protein	Q8HAA2	Salmonella_phage	1.2e-126	81.7
WP_167835178.1\|3212783_3213311_+	HD family hydrolase	A0A192Y8M4	Salmonella_phage	6.7e-62	69.7
WP_032701051.1\|3213310_3213511_+	hypothetical protein	NA	NA	NA	NA
WP_008806037.1\|3213503_3214289_+	hypothetical protein	A4JX52	Burkholderia_virus	3.8e-61	50.2
WP_032701050.1\|3214416_3214881_+	hypothetical protein	R9TME7	Aeromonas_phage	1.0e-10	39.1
WP_008806035.1\|3214877_3215147_+	hypothetical protein	NA	NA	NA	NA
WP_008806034.1\|3215553_3215790_+	excisionase	NA	NA	NA	NA
WP_167835179.1\|3215779_3216922_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	2.6e-172	81.6
WP_004150800.1\|3217034_3218285_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
3218625:3218639	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3484395 : 3493859

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004179158.1\|3484395_3486117_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3486161_3486863_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3487216_3487435_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3487554_3489834_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3489864_3490182_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3490507_3490729_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3490806_3492747_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3492743_3493859_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050840

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection