CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP042976	Klebsiella pneumoniae strain KPN55602 plasmid pK55602_2, complete sequence	0 crisprs	NA	0
NZ_CP042977	Klebsiella pneumoniae strain KPN55602 chromosome, complete genome	0 crisprs	RT,csa3,cas3,DEDDh,DinG,WYL	4
NZ_CP042975	Klebsiella pneumoniae strain KPN55602 plasmid pK55602_1, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1312502 : 1327224

Morganella_phage(50.0%)

integrase,tail

attL 1312255:1312275|attR 1332318:1332338

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1312255:1312275	attL	NA	NA	NA	NA
WP_004213157.1\|1312502_1313756_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.2e-147	60.4
WP_004213158.1\|1313851_1314859_+	hypothetical protein	NA	NA	NA	NA
WP_004213159.1\|1314989_1315208_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004213160.1\|1315207_1315642_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	2.4e-25	55.3
WP_004213161.1\|1315655_1316258_+	hypothetical protein	A0A1W6JPH8	Morganella_phage	1.2e-54	57.8
WP_004213162.1\|1316257_1316437_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_023302683.1\|1316433_1317399_+	ash family protein	A0A291AWU3	Escherichia_phage	3.9e-07	44.3
WP_004213165.1\|1317395_1317899_+	hypothetical protein	NA	NA	NA	NA
WP_004213166.1\|1317895_1318105_+	hypothetical protein	NA	NA	NA	NA
WP_004213167.1\|1318101_1318728_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.6e-25	37.8
WP_004213168.1\|1318737_1319088_+	hypothetical protein	A0A1B5FPL8	Escherichia_phage	3.4e-38	70.0
WP_004213169.1\|1319080_1321843_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.8e-292	56.1
WP_032424539.1\|1322182_1322629_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_004213171.1\|1322609_1322993_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_004213172.1\|1322997_1323471_+	hypothetical protein	NA	NA	NA	NA
WP_004213173.1\|1323654_1323825_+	hypothetical protein	NA	NA	NA	NA
WP_004213174.1\|1323824_1324151_+	hypothetical protein	NA	NA	NA	NA
WP_004213175.1\|1324158_1327224_+\|tail	phage tail length tape-measure protein 1	B1GS57	Salmonella_phage	2.0e-94	40.5
1332318:1332338	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1669238 : 1676143

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|1669238_1670102_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004214747.1\|1670112_1670886_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-26	36.7
WP_004151134.1\|1671126_1672023_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1672265_1673627_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004201558.1\|1673945_1674668_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004214740.1\|1674664_1676143_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.4e-29	28.3

DBSCAN-SWA_3

2635963 : 2646850

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209809.1\|2635963_2639071_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
WP_004176258.1\|2639125_2640391_+	MFS transporter	NA	NA	NA	NA
WP_004209813.1\|2640421_2641510_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.0e-210	99.7
WP_004176262.1\|2641596_2641857_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|2642154_2643015_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_004209817.1\|2643035_2643797_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.5e-134	99.6
WP_002903955.1\|2644057_2644960_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004183946.1\|2644971_2646237_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002210516.1\|2646229_2646850_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

3315468 : 3324932

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209699.1\|3315468_3317190_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3317234_3317936_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3318289_3318508_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3318628_3320908_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3320938_3321256_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3321581_3321803_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004209695.1\|3321879_3323820_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3323816_3324932_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP042975

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6613 : 68968

Macacine_betaherpesvirus(17.65%)

transposase,protease,integrase

attL 8995:9013|attR 40415:40433

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004213560.1\|6613_7393_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.0e-51	89.4
WP_004213558.1\|7537_8467_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.6e-72	52.4
WP_077250517.1\|8778_8937_+	hypothetical protein	A0A0U2RK18	Escherichia_phage	2.2e-05	69.7
8995:9013	attL	NA	NA	NA	NA
WP_004225014.1\|9051_10020_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.2e-172	91.3
WP_011251296.1\|12691_13558_+	ParA family protein	NA	NA	NA	NA
WP_004902347.1\|13557_14589_+	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	2.9e-08	26.1
WP_004902343.1\|14588_15026_+	hypothetical protein	NA	NA	NA	NA
WP_004214667.1\|17372_18155_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.0e-135	96.1
WP_004211835.1\|20905_21442_+	hypothetical protein	NA	NA	NA	NA
WP_004211839.1\|23761_24772_-	replication initiation protein	J9Q7H0	Salmonella_phage	1.1e-86	53.5
WP_004211841.1\|25501_26668_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	2.0e-223	97.4
WP_004117790.1\|26667_27639_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-150	86.9
WP_004215130.1\|29266_29707_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
WP_004189161.1\|29703_30054_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_004902302.1\|30084_31677_+\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
WP_004213807.1\|32004_32973_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
WP_004213821.1\|34235_34679_+	hypothetical protein	NA	NA	NA	NA
WP_004186937.1\|34688_35096_+	hypothetical protein	NA	NA	NA	NA
WP_011154511.1\|35138_36098_+	hypothetical protein	NA	NA	NA	NA
WP_004197568.1\|36849_37173_+	hypothetical protein	NA	NA	NA	NA
WP_004213829.1\|37324_37642_+	hypothetical protein	NA	NA	NA	NA
WP_004213833.1\|37707_38844_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004213836.1\|39021_39276_+	hypothetical protein	NA	NA	NA	NA
WP_029884537.1\|40418_41495_+	hypothetical protein	NA	NA	NA	NA
40415:40433	attR	NA	NA	NA	NA
WP_159181011.1\|41644_41998_-	hypothetical protein	NA	NA	NA	NA
WP_004210308.1\|42349_43234_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	4.4e-50	42.8
WP_004026565.1\|44479_44932_+	hypothetical protein	NA	NA	NA	NA
WP_004186895.1\|45174_45489_-	hypothetical protein	NA	NA	NA	NA
WP_004210305.1\|46097_47498_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_004210304.1\|47864_48347_+	MSMEG_0572 family nitrogen starvation response protein	NA	NA	NA	NA
WP_004902273.1\|48360_49362_+	Nit6803 family nitriliase	NA	NA	NA	NA
WP_004210300.1\|49321_50431_+	MSMEG_0568 family radical SAM protein	NA	NA	NA	NA
WP_004210298.1\|50441_51005_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004210297.1\|51001_51964_+	sll0787 family AIR synthase-like protein	NA	NA	NA	NA
WP_011154627.1\|51975_52266_+	MSMEG_0570 family nitrogen starvation response protein	NA	NA	NA	NA
WP_004210292.1\|52283_53549_+	MSMEG_0569 family flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_004210290.1\|53529_55200_+	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	4.7e-37	28.4
WP_004210286.1\|56237_56450_+	hypothetical protein	NA	NA	NA	NA
WP_004210285.1\|56543_56822_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_004210282.1\|56880_57285_+	DUF2251 domain-containing protein	NA	NA	NA	NA
WP_032424570.1\|57560_58043_-	hypothetical protein	NA	NA	NA	NA
WP_011154625.1\|58421_59921_-	hypothetical protein	NA	NA	NA	NA
WP_004210271.1\|59948_61682_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_004210269.1\|61681_62722_-	VWA domain-containing protein	NA	NA	NA	NA
WP_004210266.1\|62814_63453_-	VWA domain-containing protein	NA	NA	NA	NA
WP_004210263.1\|63453_64095_-	TerD family protein	A0A2P1N0C0	Streptomyces_phage	8.2e-06	25.6
WP_004210261.1\|64119_64758_-	VWA domain-containing protein	NA	NA	NA	NA
WP_004026591.1\|65237_65696_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_004210256.1\|65698_66922_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_004210253.1\|66932_67889_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_004210251.1\|67888_68968_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	1.1e-39	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042977

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP042975

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection