CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047615	Lactococcus raffinolactis strain Lr_19_7 plasmid pLraf_19_7_1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP047614	Lactococcus raffinolactis strain Lr_19_7 chromosome, complete genome	4 crisprs	csa3,DinG,WYL,DEDDh,cas3	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047614_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047614_1

314051-314199

Orphan

Consensus_repeat	Method
GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047614_1

>merge|NZ_CP047614|1|314051-314199|CRISPRCasFinder
GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAGCTTTCAGGAAGAGAAAACGCAGAAAGCCTTTGAGCGGCCGAAGATCGCGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG

>NZ_CP047614|1|1|314051-314199|CRISPRCasFinder
GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG	CTTTCAGGAAGAGAAAACGCAGAAAGCCTTTGAGCGGCC
GAAGATCGCGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047614.1\|WP_096039946.1\|310831_311062_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047614.1\|WP_061773706.1\|317656_318097_+\|DUF1810-domain-containing-protein	unknown	unknown	gnl\|CDD\|378062
NZ_CP047614.1\|WP_167839696.1\|316585_317446_-\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP047614.1\|WP_061773710.1\|322289_322688_+\|transcriptional-regulator-Spx	unknown	unknown	gnl\|CDD\|179316
NZ_CP047614.1\|WP_167839694.1\|311331_313074_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP047614.1\|WP_167839693.1\|309548_310835_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273080
NZ_CP047614.1\|WP_096039951.1\|318449_319883_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	unknown	unknown	gnl\|CDD\|237588
NZ_CP047614.1\|WP_096039949.1\|314238_315105_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP047614.1\|WP_061773695.1\|306357_307641_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP047614.1\|WP_082785331.1\|315250_315355_-\|putative-holin-like-toxin	unknown	unknown	gnl\|CDD\|319017
NZ_CP047614.1\|WP_061773711.1\|323188_323386_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP047614.1\|WP_061773709.1\|320937_322110_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP047614.1\|WP_061773696.1\|307714_308584_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NZ_CP047614.1\|WP_167839692.1\|308591_309149_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP047614.1\|WP_167839690.1\|304468_304867_-\|S4-domain-containing-protein-YaaA	unknown	unknown	gnl\|CDD\|379097
NZ_CP047614.1\|WP_167839697.1\|319983_320817_+\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|234899
NZ_CP047614.1\|WP_167839691.1\|305105_306368_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP047614.1\|WP_167839695.1\|315594_316584_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP047614.1\|WP_061773700.1\|311065_311308_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047614.1\|WP_061773702.1\|313040_313958_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203

Protein	Function_ID	Function_description	E-value
NZ_CP047614.1\|WP_167839694.1\|311331_313074_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP047614.1\|WP_061773706.1\|317656_318097_+\|DUF1810-domain-containing-protein	gnl\|CDD\|378062	pfam08837, DUF1810, Protein of unknown function (DUF1810). This is a family of uncharacterized proteins. The structure of one of the members in this family has been solved and it adopts a mainly alpha helical structure.	1.57144e-79
NZ_CP047614.1\|WP_167839696.1\|316585_317446_-\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	2.92375e-135
NZ_CP047614.1\|WP_061773710.1\|322289_322688_+\|transcriptional-regulator-Spx	gnl\|CDD\|179316	PRK01655, spxA, transcriptional regulator Spx; Reviewed.	1.4127e-67
NZ_CP047614.1\|WP_061773702.1\|313040_313958_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	2.64156e-76
NZ_CP047614.1\|WP_167839693.1\|309548_310835_+\|histidine--tRNA-ligase	gnl\|CDD\|273080	TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. [Protein synthesis, tRNA aminoacylation].	0
NZ_CP047614.1\|WP_096039949.1\|314238_315105_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	3.11789e-85
NZ_CP047614.1\|WP_061773695.1\|306357_307641_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.26948e-79
NZ_CP047614.1\|WP_082785331.1\|315250_315355_-\|putative-holin-like-toxin	gnl\|CDD\|319017	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox). Hol_Tox is a family of small proteins (34-48aas) with a single TM region. Members can exhibit antibacterial activity against Gram-positive bacteria but not against Gram-negative bacteria.	1.41518e-05
NZ_CP047614.1\|WP_061773711.1\|323188_323386_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.00879e-05
NZ_CP047614.1\|WP_061773709.1\|320937_322110_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP047614.1\|WP_061773696.1\|307714_308584_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	1.49866e-31
NZ_CP047614.1\|WP_167839692.1\|308591_309149_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.53429e-41
NZ_CP047614.1\|WP_167839690.1\|304468_304867_-\|S4-domain-containing-protein-YaaA	gnl\|CDD\|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	9.20935e-26
NZ_CP047614.1\|WP_167839697.1\|319983_320817_+\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	2.82916e-138
NZ_CP047614.1\|WP_167839691.1\|305105_306368_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	7.45093e-61
NZ_CP047614.1\|WP_167839695.1\|315594_316584_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	8.57242e-140
NZ_CP047614.1\|WP_096039951.1\|318449_319883_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	gnl\|CDD\|237588	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase.	0

>NZ_CP047614.1|WP_061773702.1|313040_313958_+|YitT-family-protein
MNRTQFKNRKIIPPMINVIKNISIEKLMYKLSASVVYAILSAVALNFFFQPGHVYSSGITGLAQIFTTLSYKLLGHDIPVSITLYLLNLPLLVLAWLKIGKRFTIYTVITVTLSSIFIHAIPEYTMTTDPIINSIFGGAVMGAGIGYALRSGISSGGTDIVSLYIRKKTGRQVGNISLLFNGVIVIIAGVLFGWQYMFYSLLTIFVSSRVTDAIYTKQRKMQATIITKHPVEITQALHQKLHRGVTVVNSAEGGYTRANMTLLITIITQAEYQEFKYIMKETDPTAFVSIAENVKVLGRFVEDDN
>NZ_CP047614.1|WP_167839694.1|311331_313074_+|aspartate--tRNA-ligase
MKRTGYAGAVRSEQIGQTITLKGWVARRRDLGGLIFIDLRDREGIMQLVVNPELASKEVLATAESLRSEFVIEVTGTVLARAQANDKLATGQVELEVTDLTVLNVAKTTPFEIKDDLEASDDTRMRYRYLDLRRPEMLSNFKLRHNVTKAIRHYLDDLDFIDVETPILTKSTPEGARDYLVPSRISEGHFYALPQSPQITKQLLMNAGFDRYYQIVKCFRDEDLRGDRQPEFTQVDLETSFLDEQEIQDLTEGLIAKVMKETKNIDVTLPFPRMTYDDAMNQYGSDKPDTRFEMLLTDVSTIVKKADFKVFSEAPVVKAIVAKNAADAYSRKDIDKLTDYAKQFGAKGLAWVKFVGHEFSGPIAKFLPEIADELADTLALTDKDLVLFVADELDVANATLGALRSRIAKEQDLIDQNQFNFLWVIDWPMFEWSEEGGRYTSAHHPFTLPTTESAHELEGDLAKVRAVAYDIVLNGYELGGGSLRINHKDLQERMLKALGFTAEAANDQFGFLLEAMDYGFPPHGGLALGLDRFVMLLAGKDNIREVIAFPKNNKATDPMTQAPSLVSDQQLTELNLKIGK
>NZ_CP047614.1|WP_061773700.1|311065_311308_+|hypothetical-protein
MTEKKVHLFIRTIAVLIIMIGALKLLQGDYNGLNLLLFVALYVVAVKKINAFLKESRLTTVLVFLAVGLQVVMLVLSKVI
>NZ_CP047614.1|WP_096039946.1|310831_311062_+|hypothetical-protein
MTDKLKILMGLSALSMAVSLYEIVTQSHQFDRTFLIIYCALIVIFNRDKAITRDKIARVVVIITLVLLLVTSFLAR
>NZ_CP047614.1|WP_167839693.1|309548_310835_+|histidine--tRNA-ligase
MKLQRPKGTVDILPGESEKWQFVEATMRRVFATYRFSEIRTPLFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHVTLRPEGTAPVVRSYVENKKFAPEVQKPFKVYYTGSMFRYERPQAGRLREFHQIGVENFGSKNPATDVETIAMAKAFFDQVGVKNIKLVINSLGDSETRERYREALIAYLEQHLDSLSDDSKRRLHENPLRVLDSKDKQDIAIVKDAPSILDFLTDASQQHLTDVKAMLESLNIAYTVDQNMVRGLDYYNDTIFEFMTEIKGKELTICGGGRYDSLVSYFGGPETPGFGFGIGVDRLLLVLEEQGASLPVAQPLDVYVVVLGASANVAALKLVQSLRDQGYAVERDVLNRKIKQQFKSAEEFGTKVIITLGESEVETGEIVVKNNATRTEVKTTLSEIQSQFDTVFTEVAADA
>NZ_CP047614.1|WP_167839692.1|308591_309149_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MKLTKENLPNNLTIARIFAIPLFILILALGGHSHVWQVIAAILFAVASATDWLDGYLARKWNIVSNFGKFADPLADKMLVMSAFIMLVPLKLAPAWVIAIIICRELAVTGLRLLLVEQGGVVMAAALPGKIKTFTQMLSIIFLLLGWNLLGVIFLYICLAATVYSGYDYFAQNMSVFKDADQSQQ
>NZ_CP047614.1|WP_061773696.1|307714_308584_+|helix-turn-helix-domain-containing-protein
MAKKTVGQVLRDQRAKLDMTLNEAEDLTQIQKMYIVALEHDDYDALPGDFYVKAYLKQYAERLDLDYDQLVTAYERNEPIDVHETPDLTENYRFVKPSERLEADEDELGNKKWRYYLPIVLLGTVAALIIISISAAVILNKPKSSGISDHLYSLSTSSKSKSSVSSTEPSTSSSSSESKAPEAPKPEITVTGNGQALSATVKNVASPVKVSLSTVAGTEVWIGMTNSDLPGGQITLTEAAPTTATLTGNQTVLTLGKTTGLTVKIGDTPINLSSIAAPGSPATLTITVE
>NZ_CP047614.1|WP_061773695.1|306357_307641_+|insulinase-family-protein
MEIKKYPQVGETLYKEVLDNGLLVYYLPKPEFNKTYGLFTTNFGSLDTRFVPRGGSDMQTFPEGIAHFLEHKLFEKKDGDAMNFFGALGANSNAFTSFTRTSYLFSTMENVEPNVELLLDFVQEPYFTQASVEKEQGIITQEIQMYQDDADFRLFFGLLQNLYPESPLAADIAGTPKSIRRISAEDLYENYRTFYHPGNMTLFLTGPFEVSEMSDLVAKNQAEKRFEPIVPIQRAPFVAAAPIPTNNLAFDVTIPKLALGFRGYDRLPSDPLLRFEYKLAIQLMLTMILGNTSSRYESLYNQGLIDDSFGFDFEVAPQYHFASMTSDTIYPIKLAKILRDTLKSYKIESDFNLDHLMIIKKEMLGDYYKSLNSLEFIANQFSSNLFEGVTFFDFPMILSSLTLEKIEKHADRFIKEMVSTEFIMNPK
>NZ_CP047614.1|WP_167839691.1|305105_306368_+|insulinase-family-protein
MKIKNGVNLHIIKETKFKTIQFLVRFRTKMSRQSVAKRVIISNLWETSNAVLTTNQQFQRKLSEMYGASFATGVSKKGDNHFLNIGMSVVNPKYVESDTVTEAVELLHQALFMPLIDEIGFDENTFAREKKNLLHYLASTREDKSYVASTRLSELFFEDKNLSTPSISTVELMEHETRQSVFEYYKKMLLTDTIDIWILGDLTATQEASIRTYFSEMPFTDREPLTTVFYEQATSNVVREKTEKEAVNQSILQLAYSHPVKYGDADYLTMQVLNGLLGGFSHSKLFTNVREKESLAYYANSRFDTFTGFLKIAAGIDAGQRSKALTIIRAQVRALAQGDISENELRQTKDMLRNAYFLSLDSPSNLIEQAYIKQLLPDRQLSQAEWLQRLDAVTKSDVVRIAKTLNLQALYFMEGESLGD
>NZ_CP047614.1|WP_167839690.1|304468_304867_-|S4-domain-containing-protein-YaaA
MNTYTIYDEFITLGKLLKEAAIIETGGAAKHFLATNDVLYNGEFENRRGKKLFDGDVLEFPVFGLKINIVAATAEEIAEHQAELDEEARVKAIVKKINADNRKTETRQKSAANNKEQYFKRKTSKPKFPGSK
>NZ_CP047614.1|WP_096039949.1|314238_315105_+|YitT-family-protein
MNKEVKFHPLNFLMIALGTAIYAFGFVNFNMVNHLAEGGVSGITLIFHALFKINPAYTQILLNIPLFILGVKIFGKRGMIYTIHGTVCLSIFIWLFQRMSMSIDLAHDTLIAALLAGIFAGIGGGIVFRFGGTTGGGDIIGRYFEQKKGFALGQTLFVFDILVLTLSLSYIDIQHMMYTVIASFVFSQVVAVVQNGGYTVRGMLIISSKYAAISQKITDEIGRGATYLKAEGVYSGQDTKVIYVVLSPIQVQAVKGILAEIDPDAFVSIINVHEVIGSGFTYTEDLNL
>NZ_CP047614.1|WP_082785331.1|315250_315355_-|putative-holin-like-toxin
MSAFETIQVLFSFGMFTIALIGLVVKLHNHDEKK
>NZ_CP047614.1|WP_167839695.1|315594_316584_-|tRNA-dihydrouridine-synthase-DusB
MTNTYDTPWKIGDIDIKNRIVLAPMAGINNKAFLSLAKEFGAGLVVTEMISDKGIEHRNAKTLSMLDFDGVPNPLSIQIFGGDAETLVEAAKFVQEHTTADIIDINMGCPVPKVTKNESGSRLLLDPNKVYDVVSAVSSAIDLPLTVKMRLGWDNDHLFAVENALAAEKAGAAAVAMHGRTKAQMYEGKADWDWLAKVASKMTIPFIGNGDVKTPEDAKRMLDETGVDAVMIGRAALGNPWMLKRTAHYLATGEVMPEPSVAEKIETAKVHLTRLTELKGDENGSREFRQHAVYYLKGAPRAAKVKVAINQANSAAEISGIFDDYMKLF
>NZ_CP047614.1|WP_167839696.1|316585_317446_-|Hsp33-family-molecular-chaperone-HslO
MDKIIKTISNNGHFRAYALEATQTVSEAQKRHQTWSSSTVALGRTLIAAQILGANQKGDDTITVRVQSNGAITSIIAVADTRGNVKGYIKEPNVDYKRGSTGEVLVGDLVGQGWFSVVKDMGLKTPYTGQTPLISGEIGEDLAYYLTTSEQTPSAVGLNVLLNEDESVHVAGGFLVQVMPDTPEAEIAAFETRIQNMPAISKLLRSHDHSKAILDAIYGQDQYKILAESPLAFHCDCSKERFADGIQGLGKIEVEKLITENHGAEVICQFCETVYNFSENDLKELI
>NZ_CP047614.1|WP_061773706.1|317656_318097_+|DUF1810-domain-containing-protein
MDEQKFNLERFIKAQKDDYAIALSEIKQGRKSSHWIWYIFPQLDGLGRSTQARYYSISGLDEAVAYYHHPILGARLKEISTALLELETDDSVKVLGKIDALKLKSSMTLFNYAAPHEDIYQKVLDKFYAGEKDTATLKLLCHFSEK
>NZ_CP047614.1|WP_096039951.1|318449_319883_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase
MITLKTVIAILKQDQNFRDIIIDGAYFNAPHQDLTFHQLSYDSREVTDSTLFFAKGLNFKREFLADLAIPFYVSETDYEVEIPAIIVNDVKHAMSLIAMAFYDQPQDALKTLAFTGTKGKTTAAYFAKNILDTHNGGKTAMFSTMETTLDGETFFKSQLTTPESLDLFRMMREAVSNGMTHLVMEVSSQAYKTARVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYCKRQLLANSRYAVVNAEMAHFDFVKSELTGETAFYGAGSEHPISNSEAFSFSALDTNFEIQLIGRFNQENALAASLATIHLGASLADAQAGVAATTVPGRMEVLTQANGAKVFVDYAHNADSLEKLLDVVMPHQTGRVVLVMGTTGNKGESRRQGVGELLEQLPKIEVILTADDPNFEDPAEIAREIASYMTRDVQIIIDRETAIRTAMASTSGADDTVIIAGKGVDAYQIVNGVREPYAGDRKIAEKYL
>NZ_CP047614.1|WP_167839697.1|319983_320817_+|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRRGLNKLVRGQKITALRINYTRMIKSDLTTFKTDLINQTIQEVNRRGKYLLFELGEQTLVSHLRMEGKWLSYPSTDIPDNKHFHGFFDLSNGQTLVYQDVRKFGTLELVKTSELSDFFNRKKIGPEPIEADFDLKRFKHQLSGSQKKIKPYLLDQSLVAGLGNIYVDEVLWLAKIHPSEIARHLSPHKVAELRRAVIHILAEGVKYGGSTIRSYKNALGLDGTMQDHLQVYGKTGQPCARCGGAIEKFKLSGRGTHFCPKCQKLKKI
>NZ_CP047614.1|WP_061773709.1|320937_322110_+|recombinase-RecA
MAKKAKKNLDDITKKFGDEREKALNDALKVIEKDFGKGALMRLGDKAEQKVQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVRGNTQIKGTGDDKDTAMGKETKIKVVKNKVAPPFKVAEVEIMFGEGISQTGELVKIATDLDIIKKSGAWFSYNDEKIGQGSEKAKLYLKEHPEVFAEIDHKVREKFGLIAGETTEGQTEEKAATKSSKAKKETAAESELVSLELDTIEIEE
>NZ_CP047614.1|WP_061773710.1|322289_322688_+|transcriptional-regulator-Spx
MITIYTAPSCTSCKKAKLWLDQHDISFDERNIMSYPLSTDEVKHILEKCDDGIESLISNRNRFVKSLNVDFEELSLSEAVTIISENPQILRRPIIMDDKRLHIGYNEEEIRAFLPRSVRVLENDGLRLRDAI
>NZ_CP047614.1|WP_061773711.1|323188_323386_-|CsbD-family-protein
MSDKGTVDKLKGKAEEVAGTVTGDNKKKAEGLLNQAIGKVKETASDVKEAVEDGVEKIKEKIDHD

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Crispr_ID: NZ_CP047614_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047614_2

453118-453251

Orphan

Consensus_repeat	Method
TTCGCGGGTTCCCCGCTCATCATTAAAGGAGTTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047614_2

>merge|NZ_CP047614|2|453118-453251|CRISPRCasFinder
TTCGCGGGTTCCCCGCTCATCATTAAAGGAGTTGCCAGTCCAACGGCTAAGCGATGAATCGCCAAGCCACGTTGTACATAGCAACTTCCCTAAATTTTTCGCGGATTCCCCGCTCATCATTAAAGGAGTTGCCA

>NZ_CP047614|2|2|453118-453251|CRISPRCasFinder
TTCGCGGGTTCCCCGCTCATCATTAAAGGAGTTGCCA	GTCCAACGGCTAAGCGATGAATCGCCAAGCCACGTTGTACATAGCAACTTCCCTAAATTT
TTCGCGGATTCCCCGCTCATCATTAAAGGAGTTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047614.1\|WP_061773792.1\|447183_447705_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|237597
NZ_CP047614.1\|WP_138492085.1\|465818_466181_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047614.1\|WP_061773794.1\|448750_449437_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP047614.1\|WP_167839780.1\|453927_454386_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|376799
NZ_CP047614.1\|WP_096040001.1\|456878_458222_+\|Sapep-family-Mn(2+)-dependent-dipeptidase	unknown	unknown	gnl\|CDD\|349884
NZ_CP047614.1\|WP_167839777.1\|446323_447187_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225543
NZ_CP047614.1\|WP_061775394.1\|456140_456869_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP047614.1\|WP_061775403.1\|450675_451077_-\|HIT-family-protein	unknown	unknown	gnl\|CDD\|238608
NZ_CP047614.1\|WP_138492086.1\|466164_466992_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236841
NZ_CP047614.1\|WP_167839779.1\|451892_452918_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226879
NZ_CP047614.1\|WP_003139488.1\|448152_448578_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP047614.1\|WP_096040002.1\|458237_459206_+\|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	unknown	unknown	gnl\|CDD\|271335
NZ_CP047614.1\|WP_167839781.1\|461306_465653_+\|VaFE-repeat-containing-surface-anchored-protein	unknown	unknown	gnl\|CDD\|375630
NZ_CP047614.1\|WP_167839778.1\|449892_450219_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047614.1\|WP_061775400.1\|451156_451900_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP047614.1\|WP_096039994.1\|447701_447911_+\|YozE-family-protein	unknown	unknown	gnl\|CDD\|184229
NZ_CP047614.1\|WP_061775391.1\|459287_460778_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP047614.1\|WP_061775396.1\|454453_455086_-\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NZ_CP047614.1\|WP_096040000.1\|455267_456122_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP047614.1\|WP_096039996.1\|450294_450525_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047614.1\|WP_061773792.1\|447183_447705_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	1.25875e-87
NZ_CP047614.1\|WP_061773794.1\|448750_449437_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	3.91357e-141
NZ_CP047614.1\|WP_167839780.1\|453927_454386_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	1.94856e-53
NZ_CP047614.1\|WP_096040001.1\|456878_458222_+\|Sapep-family-Mn(2+)-dependent-dipeptidase	gnl\|CDD\|349884	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides. Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminus, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Also included is the Staphylococcus aureus metallopeptidase, Sapep, a Mn(2+)-dependent dipeptidase where large interdomain movements could potentially regulate the activity of this enzyme.	1.84712e-157
NZ_CP047614.1\|WP_167839777.1\|446323_447187_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	3.16705e-127
NZ_CP047614.1\|WP_061775394.1\|456140_456869_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	4.67775e-54
NZ_CP047614.1\|WP_061775403.1\|450675_451077_-\|HIT-family-protein	gnl\|CDD\|238608	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.	4.9777e-49
NZ_CP047614.1\|WP_138492086.1\|466164_466992_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	4.18122e-25
NZ_CP047614.1\|WP_167839779.1\|451892_452918_+\|ABC-transporter-permease	gnl\|CDD\|226879	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion].	5.64511e-62
NZ_CP047614.1\|WP_003139488.1\|448152_448578_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	3.22221e-93
NZ_CP047614.1\|WP_096040002.1\|458237_459206_+\|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	gnl\|CDD\|271335	cd04513, Glycosylasparaginase, Glycosylasparaginase and similar proteins. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.	1.3849e-119
NZ_CP047614.1\|WP_167839781.1\|461306_465653_+\|VaFE-repeat-containing-surface-anchored-protein	gnl\|CDD\|375630	pfam18202, TQ, T-Q ester bond containing domain. This domain is found in gram positive bacterial surface proteins. It contains a very unusual isopeptide bond between a conserved N-terminal threonine residue on the first beta strand of the Ig-like fold and and a glutamine residue in the final strand of the domain.	5.91597e-33
NZ_CP047614.1\|WP_061775400.1\|451156_451900_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.85853e-85
NZ_CP047614.1\|WP_096039994.1\|447701_447911_+\|YozE-family-protein	gnl\|CDD\|184229	PRK13672, PRK13672, hypothetical protein; Provisional.	1.29511e-27
NZ_CP047614.1\|WP_061775391.1\|459287_460778_-\|hypothetical-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	3.86576e-10
NZ_CP047614.1\|WP_061775396.1\|454453_455086_-\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	1.66026e-88
NZ_CP047614.1\|WP_096040000.1\|455267_456122_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	1.96256e-56

>NZ_CP047614.1|WP_167839779.1|451892_452918_+|ABC-transporter-permease
MAKDIFGLFAKRRAHWRAQNLKYLRYVFNDHFVLVLMFLIGFLAYQYADFLKKLPEHWWPGYVIAVLISLLILLFGRLATFVEKPDQLFLLAKEKAVQTHLINAVKGSLILPAVLIVLMTMLISPLIHISLVVTLVWALVLIAIKYGLLLKKARTFMQDGLIQWQDLINYEKNRQNAILKVFSQFTDVRGLQQQAKRRKYLDVLLPKSKMVYDYLFVRTFLRSGDYFMLMLRLLGLAVLSLIFIQSDVFALVIALIFDYLLVFQLLPLRQSQDYQILTQLYPLPTSAKNLAAGKLIRGLTLLICLVELGVSLLVFQDKLLAVIFIPIAVFLGVLYPKYKLK
>NZ_CP047614.1|WP_061775400.1|451156_451900_+|ABC-transporter-ATP-binding-protein
MTLKIENLTGGYFGTTVLKDVDFTVNDGELVGLIGLNGAGKSTTIQEIIGLLTPYQGQILLDGLSITQDAESYRKKIGFIPEQPSLYEELTLREHIEVTALAYDVAPDVALARAEKMLKTFRLSDKLDWFPANFSKGMKQKVMIICAFLTEPSLYIIDEPFLGLDPLAINDLIDLMIEMKKTGASILMSTHILSTAEKFCDKFIVLHEGQVIADGDLAALRAKFNLPEASLDEIYVALTDESWQAHG
>NZ_CP047614.1|WP_061775403.1|450675_451077_-|HIT-family-protein
MTDCIFCKIISGDIPSYQVYEDDDVLAFLDITQTTKGHTLVVPKKHIRNVLEMSAEDAATLFSKIPHIASHITQRLSASGMNILQNNEMIAGQTVFHAHVHLIPRYSKDDGFKASFTEHDLDLKALQDTLTTL
>NZ_CP047614.1|WP_096039996.1|450294_450525_-|hypothetical-protein
MSIIDYFKDLKAIGSDLISETAEAKKHLDTVKFELGYAQFVMDDIKKDIKEYQFQAQPRIDAINTLSTKIQNELSK
>NZ_CP047614.1|WP_167839778.1|449892_450219_+|hypothetical-protein
MLKFVGWYMSIAFAILYAFQFLGMMAVGDYAMFVGMLFLTFVLIKDQKIKEMVASNVCLLIVILILWFSDDTFHYIQNTGMLLIFVGAMVIAELFGGFWGRKFARDHF
>NZ_CP047614.1|WP_061773794.1|448750_449437_+|50S-ribosomal-protein-L1
MAKKSKQLRAALEKVEATKVYTVEEAVALAQETNFAKFDATVEVAYNLNIDVKKADQQIRGAMVLPNGTGKTAKVLVFAKGEKAEEAKAAGADYVGEMEYVEKINGGWFDFDVVVATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVTKAVEEVKAGKVTYRAEKAGIVHVAIGKVSFETEKLVENFKAINTVIAAAKPATAKGTYIQSLTVTTTFGPGIKVDPNF
>NZ_CP047614.1|WP_003139488.1|448152_448578_+|50S-ribosomal-protein-L11
MAKEVQNIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFTFVTKTPPAAVLLKKAAGVEKGSGTPNTVKVATVTKAQVQQIAETKMEDLNASSVESAMRMIEGTARSMGFTVEG
>NZ_CP047614.1|WP_096039994.1|447701_447911_+|YozE-family-protein
MSFYNFLMKFRAYKEVDDITKLANLVYEDTTFPKHASDFDEISTYLETHANFAFNLSSFDEIWEQYLAN
>NZ_CP047614.1|WP_061773792.1|447183_447705_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MSQERAIFAGGCFWCMVQPFEELPGILSVLSGYTGGTTQNPTYEDVLTHQTGHTEAVEIIFDNSIVSYGELVELYWTLTDPTDAFGQFQDRGDNYRPVIFYDNAEQQQIATESKAQLQASGRFDFPIVVAIEPSQTFWPAESYHQGFYKTNPVRYAQSSQLRHDFLAKQWGKK
>NZ_CP047614.1|WP_167839777.1|446323_447187_+|S1-RNA-binding-domain-containing-protein
MTDLNAIMATRITGKITDENDQNYYIQKDGLIFRLPKTEGDFTIGDDVTGFAYTDKAGKQRLTLTEPSATRDTYGWGTVTDVRKDLGVFLDVNIPEKDVVVSVDILPELKELWPKKGDKLYVKLNVDNKDRIWGELAYPETFVQMAGKAYDNMQNQNLHAIVYRNKLSGSFVYLPENNMLGFIHPNERFSEPRLGQELDVRVIGYREIDKTLNLSLKPRSYEMLDADAQLIMTYLEQQGGHMPFYDKSAPEDIKATFAISKGQFKKALGGLMKQGKIKQDETGTTLL
>NZ_CP047614.1|WP_167839780.1|453927_454386_+|RpiB/LacA/LacB-family-sugar-phosphate-isomerase
MKIIMASDHAGVELKAEIKALLETMGHEVDDMGPYDTTAVDLSDFVYPAALKVSQEKVRGIFVDGVGYGSALIANRIYGLDAVVCQDPFCAKLAREHTDSNVLCLGGKIIGSALALEIVRTWMTTDFLPEEKYIRRVEKVKAISEKHLVKNF
>NZ_CP047614.1|WP_061775396.1|454453_455086_-|copper-homeostasis-protein-CutC
MLIREFCAENFTDIPRAVAAGAERIELCDNLAVGGTTPSYGVIKETADYLKDTKTTFASMIRPRGGNFVYNSIELRIMESDILKAVEAGTSELVFGALTDDNSLDLEALETLMIASQGLPVTFHMAFDEIPTDLQKSALDELVTLGFDKILMHGDSLDKPVNTSKIAELVSYAAGRIQILAGGGVTSANAETVSAETGSSYVHGTKIVTL
>NZ_CP047614.1|WP_096040000.1|455267_456122_+|YitT-family-protein
MASLKDHLKKLVIAASYAFLSAVSVNLFWVPGGIYANGVTGFAQLVVALSGKFHLPMLDLATLVLLINVPLLVIAWFKIDRKFTIFTIIAVFLTSVFMKLIPVMALTNDPVICTVFGGVIHGLGVGITLNSDFSTGGLDIIGILVRKVTTRSIGTIFTAFNLAIEFIAGFVFGWRYALYSAITVFINGRVVDFVNTKERKVQLLIVTKHANEMLRRIQDNHQSGITVINHAQGGYYHESQDILLLVVTSHELNAISSVVKKVDQLAFMSITKGIETNRSTSQWG
>NZ_CP047614.1|WP_061775394.1|456140_456869_+|GntR-family-transcriptional-regulator
MENKKGISIYKQVAKEIECKVKNGIYVTAQKLPSEAELAQEFNVSRLTVRKAINLLIEKKVLVKHQNTGTYVMNRQKLASGASGLQGFNEVAKAKGKTPRTEVIGVSQIDYDDELWAELEAKENEVIINVNRIRYLDDLPMTVEDLYIREKFLPENLKEAAFENSIFELIEQKIEIAYSHQEIEAVLIDKMMSIAFELPVGQPMFRATSNVFSVTGVPIMHDISYYRSDEYVFSNTLVRSQH
>NZ_CP047614.1|WP_096040001.1|456878_458222_+|Sapep-family-Mn(2+)-dependent-dipeptidase
METKIKALVEENWEDFLNDLAQVIRIPSVQGIAEANCPFGREPKAAVLQALEIAKGYGFETKLVNQAVGYAQFGESRVDQKYLGIIGHLDVVPADESNWDSPPFALSRRNGVLYARGILDNKGPIMSCLFGLKLIKDLGIQPKIPIRILFGSNEEMGSHDMPLYLEKEVPPIFGFTPDCKYPVVYGERGIVNLAIKTTIEDAATVKLGDFRGQMSRSIVPSELSVIFDEQKITALGKSSPSNAPEMGVNSITKLAHELSEILPSGALKTYFSWLDDHLSEEYYGGKLGIGYSDEASGKLIVTPVLIEKIDDQNLLLELAIRYPISVTQDMIITAIKEHLPQKSQVTVTRALKGTNFPIDNPYIKLLSDIYGSVTGLDVKPVTTTGATYARYMPNTVAFGPSFPGQKGIAHKENEYFVEADLKTNLIIYALAIYKLCLSASGNNTRTD
>NZ_CP047614.1|WP_096040002.1|458237_459206_+|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase
MTYGIIATWAMAFEGISNAAKDLAKNGTIADNIEATIKKVEDFPFYKSVGYGGLPNEEMIVELDAGFMDGDNLDIGAVAGIQDFANPVSIARALSTEKLNNVLVAEGAAKYAQKMGFERKNMLTDRAMNHYKNRLKENSQGSESGIVPYRGHDTVGVVGVDMTGRIVSGTSTSGLFMKRAGRVGDSPIAGGGFYADSEVGAASATGLGEDLMKGCISYEIVRSMREGLSPQEACEQAVNELEARLIKRKGIAGDLSVVAIDKNGDYGCATNIDNFSFVVATDKIEPTVFIANRFAGKTVHKKASMAWLENYMQTRTAPLIEK
>NZ_CP047614.1|WP_061775391.1|459287_460778_-|hypothetical-protein
MKNILLDKESQYILKMTKLLSAAPNHELSLSDLEMELGLAKQTIKSYFKKLLNYCQEQGLTTFSVESNHFKMTPDTAFNIFKLRHYLIQKSVKFHIMFRIFTDTSTTFTNLHQELGISRSKCSVHIKELNDYLADYDCHINFIQKNPLLGEEHQIRFVFHNLFWGLDLNDIIEKTSSLEAVSSLLLDFVPTLDYSTFLRIKLNFYIFQINTRHGFFLAPEEDVFSTPDSPYVTYDNFFDKIEAIGFLDICPDLETKQRECRYLYFLFCRANLIMLETWKNTDLRVKHLHAPEIDDIIMQFQSKINFNLSVSELNYLHYNLILMNQEASIFKGINRIFDLEEVTNEVHHTEANTYTFINDFILNYRDQNVEFKALIQHFPNLFRHYLILLKNILRQHKQPLKILVETISTPIHREMLISQVRDVSPVPIIISTFNQLNGEQPDAIISNWMPENKYNDVPFFSTSLFFSDWKITNLNHFLNQIADRKNNFSLTNDFVD
>NZ_CP047614.1|WP_167839781.1|461306_465653_+|VaFE-repeat-containing-surface-anchored-protein
MLKMYNYKNKVINGVMLVTILFNLMLALVGPLSKVVAETNNTTSLGDFGDSAGNTQADFYSGNTTKGVGKEILYDGIRYDRSSVAPTRTTLGAYYSGSLNDPRSYCTWSGRAIGEYPQDMNVPAQLIKDGDTISIRKYRGNMNTVTLSDYNPEDTYLTSIAKVAWLMDYVGETPEGDLRARRAGALGIIVHDSELEMNPFRTDITYHNNQYKLYQSNTWETDNSIKKLSAAGIYANEKDRTGLYAQLDALGEANKGPYGLVVNPIVQVGNTAVANFSYRVWNQGNKATNYVTDREQITATLSGPATFADGSKTKTVNVGTSFGPLTLTGNGKVSASLKTTRFPSTALYRYYDGSTQTMVTKGPNGDSLSGATSTDVVLTGKLKIKKVGVDTLTPYNGEYTYQGAQFGIYASKADAQNKANVLQVLTTGATGETPESNELVSGKIYYIRELVAPKGHKLSDDIKEVLLPPSTGTNTVVMTEYPDNEQYGRISIDKQAKHASLAGDKVFNANYSLVGAEYTVYTDANASIQAKDKGNNLVKLTTTSDGHAVSSELLLGTYYVKETKAPNGFLIDPTVYKVELKSTDQNTSVFDVNQSVTDTEVFGNTILNKVDDENGSIPQGKASLKGAKYSLYYADGTKVLWHAKFAPTLLNGTKVTTTDDSIVLETSKDTDDRYKVGVGHLALGDYYWQEIEAPEGMQIDTTKHPVNLAYADQNTSVVVSQTTSQEKVIKLKIRGKKELEKAQNETVMNQNNANGIEFTLTPKAGTNAPVQKTVTATYDKQEGYFSFDMPYGNYTLTETKGKEGYYDINPIDITMTDDGANVHVKIVDSVTGYIYHEADYSQSDINAMPKPILMPNVINVEDPLIKAKLRLEKKDAETGKKIPLAGVQFKIWDIQEGKYVTQVDPENTAQLTTTFKTDASGEIFLQKELTYGKNRYRISEVTAPENYEINLNDLVFSVDESTIVHETIGGNKVPVVTVQFNDKPAKSYIQLTKYFESLMGIEGEEGNWNFIWNHIRGWEGATFDVYVDKDITEADGKTIRVAPDGTRFSKDTKVATVSTDALGVAQTTSTLYVGDYYLVERKAPAGQYFDSNVKIPVSISFNGKDYIGTPGMVDRFDNNRQTVKVVLPKLEELVTGLDSDNKPVIGKQPGANKTFGLYNNDPIMGYPKGRNPLLPNQGLGVILKPNSLIRHYTTNAAGLIELNQKLPAGEYYFQESNAGENFALDTTHYYFRVADTNNDSVVAVDLYQKDANGNKVVLGEILNRLNPPKIGTTATDAEDGDKQLSLEKEVTVHDEVAYENLFTDRQYTLTGTLMNKATGQPLKDVTGHDVLVTKSFTPVTTKGSIGLDFTLDATHLANKDVVVFELLKETVADKEVAAHRDINDKGQTVHFEDKPKLPSTDGYPRRPLPMTGETQIAIGFFLSLIVSLVGILTRIKHKANKKTFKHEM
>NZ_CP047614.1|WP_138492085.1|465818_466181_+|hypothetical-protein
MYNYLKADLYMANLMLDHIQLVKKTQGQKIDIDYLVFLEHIAYNLDDISEETKAAFPEVDWTSVDQFRTFITYEVQHFKLGDIIETVSPEILMLSHTLPLLRDKLMKRLEYTRKEYVKEN
>NZ_CP047614.1|WP_138492086.1|466164_466992_+|methyltransferase-domain-containing-protein
MLKKIDKAAQYLAQNIDLLRCPLCHTSFRLDGYALICDNRHTYNLSKKGVVNFLTIKPDTTHYTRKMFEPRRNLIQAGMYAPVLNAIQHQLTPGNLLDVGSGEGSFLELLDVSGHKFGFDIALDGVNMATDLTEMQAFFSLSDLTNLPFADQSMATVLNIFTPSNYREFDRVLSHGGQVVKVIPDRYYLQELRSAFGLPVDYDNGDVLAKFSENFPDFTQKEIHYEFDLPEQQRQDFLSMSPLEWRISETDKLEIAKNPPKKATIHVQILQGYKS

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Crispr_ID: NZ_CP047614_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047614_3

1618590-1618733

Orphan

Consensus_repeat	Method
CTAAGCTCTTCGTCTCTTCGTTCCTCAATCGCTAAAGGAGTAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047614_3

>merge|NZ_CP047614|3|1618590-1618733|CRISPRCasFinder
CTAAGCTCTTCGTCTCTTCGTTCCTCAATCGCTAAAGGAGTAGCCTGTCCAACGACTAAGCGGTAGAACCGCTAAGCCACGTTGTACATAGCAACTTCTCTAAGCTCTTCGTCTCTTCGTTCCTCAATCGCTAAAGGAGTAGCC

>NZ_CP047614|3|3|1618590-1618733|CRISPRCasFinder
CTAAGCTCTTCGTCTCTTCGTTCCTCAATCGCTAAAGGAGTAGCC	TGTCCAACGACTAAGCGGTAGAACCGCTAAGCCACGTTGTACATAGCAACTTCT
CTAAGCTCTTCGTCTCTTCGTTCCTCAATCGCTAAAGGAGTAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047614.1\|WP_167840162.1\|1617209_1617851_+\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319798
NZ_CP047614.1\|WP_061773984.1\|1617847_1618519_+\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta	unknown	unknown	gnl\|CDD\|224674
NZ_CP047614.1\|WP_167840161.1\|1610286_1611411_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP047614.1\|WP_096039367.1\|1622687_1623563_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP047614.1\|WP_096039360.1\|1612399_1613452_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222878
NZ_CP047614.1\|WP_096040495.1\|1630659_1631211_-\|competence-protein-ComEA	unknown	unknown	gnl\|CDD\|213597
NZ_CP047614.1\|WP_096039362.1\|1614611_1615550_+\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|237010
NZ_CP047614.1\|WP_061773991.1\|1611676_1612288_+\|type-1-glutamine-amidotransferase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|225877
NZ_CP047614.1\|WP_061773989.1\|1613659_1614205_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_CP047614.1\|WP_061773979.1\|1623698_1625204_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP047614.1\|WP_003140734.1\|1627212_1627413_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|237390
NZ_CP047614.1\|WP_061773982.1\|1620806_1621226_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP047614.1\|WP_061773978.1\|1625344_1625872_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NZ_CP047614.1\|WP_061773977.1\|1625874_1626384_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP047614.1\|WP_082785352.1\|1614197_1614500_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226801
NZ_CP047614.1\|WP_061773981.1\|1621237_1622650_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP047614.1\|WP_096039358.1\|1608831_1610112_+\|citrate:sodium-symporter	unknown	unknown	gnl\|CDD\|226024
NZ_CP047614.1\|WP_096039363.1\|1615655_1616114_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047614.1\|WP_167840163.1\|1628441_1630721_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
NZ_CP047614.1\|WP_096039368.1\|1626396_1627107_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617

Protein	Function_ID	Function_description	E-value
NZ_CP047614.1\|WP_167840162.1\|1617209_1617851_+\|HAD-hydrolase-like-protein	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	9.71993e-80
NZ_CP047614.1\|WP_061773984.1\|1617847_1618519_+\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta	gnl\|CDD\|224674	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism].	1.75016e-81
NZ_CP047614.1\|WP_167840161.1\|1610286_1611411_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP047614.1\|WP_096039367.1\|1622687_1623563_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	1.30248e-140
NZ_CP047614.1\|WP_096039360.1\|1612399_1613452_-\|hypothetical-protein	gnl\|CDD\|222878	PHA02562, 46, endonuclease subunit; Provisional.	0.00267937
NZ_CP047614.1\|WP_096040495.1\|1630659_1631211_-\|competence-protein-ComEA	gnl\|CDD\|213597	TIGR01259, ComE_operon_protein_1, comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation. [Cellular processes, DNA transformation].	4.1714e-36
NZ_CP047614.1\|WP_096039362.1\|1614611_1615550_+\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	1.64829e-50
NZ_CP047614.1\|WP_061773991.1\|1611676_1612288_+\|type-1-glutamine-amidotransferase-like-domain-containing-protein	gnl\|CDD\|225877	COG3340, PepE, Peptidase E [Amino acid transport and metabolism].	4.30558e-65
NZ_CP047614.1\|WP_061773989.1\|1613659_1614205_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	8.15842e-32
NZ_CP047614.1\|WP_061773979.1\|1623698_1625204_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP047614.1\|WP_003140734.1\|1627212_1627413_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|237390	PRK13467, PRK13467, F0F1 ATP synthase subunit C; Provisional.	6.60374e-19
NZ_CP047614.1\|WP_061773982.1\|1620806_1621226_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	1.06545e-48
NZ_CP047614.1\|WP_061773978.1\|1625344_1625872_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	9.65063e-49
NZ_CP047614.1\|WP_061773977.1\|1625874_1626384_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	3.32955e-42
NZ_CP047614.1\|WP_082785352.1\|1614197_1614500_+\|hypothetical-protein	gnl\|CDD\|226801	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown].	4.21181e-29
NZ_CP047614.1\|WP_061773981.1\|1621237_1622650_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP047614.1\|WP_096039358.1\|1608831_1610112_+\|citrate:sodium-symporter	gnl\|CDD\|226024	COG3493, CitS, Na+/citrate symporter [Energy production and conversion].	3.86307e-158
NZ_CP047614.1\|WP_096039368.1\|1626396_1627107_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	2.09664e-67
NZ_CP047614.1\|WP_167840163.1\|1628441_1630721_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.24111e-93

>NZ_CP047614.1|WP_061773984.1|1617847_1618519_+|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta
MRHLKFKSVFDIMGPVMIGPSSSHTAGAVRIGKIVHSIFGEQPTEVEFHLYQSFAKTYRGHGTDLALVAGILGMETNDPRIPDSLEIADKAGIKVFWHIHKDEKADHPNTAKIIIKSETKSMSIKGISIGGGNIQVTELNGFDVALNMNTPTLIIVHQDLPGMIAKVTDRLSKHDINIAQMNVTRENAGEKAIMIIEIDSRDVDQALAEIKAIDNLHNVNFFG
>NZ_CP047614.1|WP_167840162.1|1617209_1617851_+|HAD-hydrolase-like-protein
MTLKNLFFDLDGTILESSRGILNSFRYTFDEMGHPQLSDAELNTFIGPPLEATFATLANGDDAWAEKAIVTYRKYYAEKGMLEAEPYDGILEMLEELQHFDYNLFIATSKKEDVAQNMLAGLKLSQHFKGIFGNTPQAHSKTLVLKKSLDLSQSTPNTSAMIGDREYDIIGGQENKVAKTIGVLWGFGDETELKNAGSDILIAHPQQLLEIIR
>NZ_CP047614.1|WP_096039363.1|1615655_1616114_-|hypothetical-protein
MIHLVYCDDKEKVLEKILSGEKTMIVRGAAGRKIPHSRVFEGETLYFIKKGTKDIATKARVKSVQNFVKLTDEEITTRLEEHQDKLALSDKQKTRWHKKCLCLVEFEAVEAISPLEFERQGNMDDWLILEKIEDVVVGTSVPYDYKNAKFKS
>NZ_CP047614.1|WP_096039362.1|1614611_1615550_+|biotin--[acetyl-CoA-carboxylase]-ligase
MTTSTAEIILNLLINHENEWVSGQELAASLNLSRAAIWKAIAKLTADGFTIESQRGPGKGYRYIPDEKMSAAGISHDLEHDITVQVFDSLPSTNVYAKQGLVNGDVTEPTVIIANIQTRGTGHFGRVFDSPAQTGLYLSFALPVDPDQQVVPHLLATSLAVAVGRTVKALFDIDLDFKWINNIYYQGQKVGGILTEAIVNFETQTYSALVVGIGLNLTNKQTELGYLTSQLAISRNQVAAALIDQFLNLYDTYLDGKFLDDYRAHFSDLNQTIQVQCSQKILSGKAVRIDNDGRLILETAEGLEKLAAGETL
>NZ_CP047614.1|WP_082785352.1|1614197_1614500_+|hypothetical-protein
MPEIFGLQVDKSGRCQHWHGENDVVANQCASCQQYFACYLCHNAIKDHEFIPNPWHKLSVMCGNCRSQMTGNVYRHLSACSTCQQPFNPGCHLHAHLYFN
>NZ_CP047614.1|WP_061773989.1|1613659_1614205_+|biotin-transporter-BioY
MKTRHLTLSAIVLAALIVIAYIPIIPLPLVPITIQNLGIMLAGALLGGRKGFITVALLLLLAMLGLPVLTGGSGGFARFFGATAGYLWAYPVGAGLIGFSVAKLKQLNRLNFLSVLVIILVFGVLFIDGMGAIGLTLVTKMPLSKSLFLQLTYMPGDVIKAIVASTITVALHTRFGKFLNA
>NZ_CP047614.1|WP_096039360.1|1612399_1613452_-|hypothetical-protein
MNKKCIKGLVALTVLISIVVAWNIRKNSDANGNNGQLSIKTSSEAAHQAKIDKKIVKTYQPTREIAAITEKIGFTEKGRVIFYASNPQLLDAADFNAEVPDSYDTNATLGYYNHRKIFLYRIKNQDLEDIVEVTAAHEALHADWYRLTCQERRELMPLLEEDYAKIKTEKTEKLLADYAKFELGQRDNELHSFLGTEYHHLSPKLEKHYAKYFKNREKIVTMYENYQSKFDALEQKSTQLSAETTSLKEQIDSDLSQYETDLTNVNSEIDAFNSRSQNKAYASESEFIADRDSLQQKVSELTERQTQISSVVDQYNAKTDELNRIALKSSEFNKSINSKAIMPNQVPKAS
>NZ_CP047614.1|WP_061773991.1|1611676_1612288_+|type-1-glutamine-amidotransferase-like-domain-containing-protein
MKKLFLSSSFDDVANRLPAFIGEKLAGKVVTFIPTANVPQDYDGYVLSAKAAFESLGLTIDELEVSTASPSDIQSKLTQNDYIYVSGGNSFFLLQELKRTGADQLIIDQINQGKLYIGESAGSIITSPDIAYISAMDSTKKAPNLTSTEGLNLVDFYTLPHATNEPFEEEAQEIIAAYGNKIKLKPISNDQVIMVLGDTIRVS
>NZ_CP047614.1|WP_167840161.1|1610286_1611411_-|tRNA-2-thiouridine(34)-synthase-MnmA
MQNDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDDFGVCTATEDYKDVALVADQIGIPYYTVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAIELGADYVATGHYAQVTRDDNGIVHMLRGADDNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVRKIAERAVLATAKKKDSTGVCFIGEKNFKQFLSQYLPAQKGRMMTFEGRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFHNEALYSTSLDASDLSFTRDMPDTFDMHCTAKFRYRQADTGVTMKVNGEKVTVVFDEPVRAITPGQAVVFYDGAECLGGAMIDHAYKNEQVMQYQ
>NZ_CP047614.1|WP_096039358.1|1608831_1610112_+|citrate:sodium-symporter
MKDLKTIKISGIPLPLYAFFIVILASVIALGKLPLNMVGITLLLVVLGHLLYYIGEKLPIVNSYLGGGSVFTLIGATLLSFGHVIPKNVIGAVGKFMGGQFGFLDFYIAALICGSILGMNRKLLIKASTKFIPVTLVTMVIGFFAVGGMGMLLGKGFAHSVMYVSMPMMAGGMGAGITPLSQIYASGLAHGSQAAIFSQLAPAVTFGNIMAIIGALSISKVFANTKYNGHGTLISATKEELERPKIKLDAQRIGVGMLFAFTLLMVGCLLNNFFPKVHEYAFMIIIVFIIKATNTVPKQLEESVIMFNEVVMTNLTHAVLAGIGLALIDLKTLASALTWQFVILCLTSVVAMGLASWFLGKILGMYPVETAIGAGMINNSMGGTGNIAVLSASDRMEMIAFAQMGNRLCGAIVLIMGGILIRLFYP
>NZ_CP047614.1|WP_061773982.1|1620806_1621226_-|F0F1-ATP-synthase-subunit-epsilon
MDYMTVQVITPNGICYDHHAYFILLSTVDGELGVLPNMIPTIASLKIDELKVRRIDDEKHVDWISINGGIAEVRNNLVTIVADSAERERDIDVTRAERAKRRAESELQEAENKRDVDAAKRAEVALHRALNRLRVSNHR
>NZ_CP047614.1|WP_061773981.1|1621237_1622650_-|F0F1-ATP-synthase-subunit-beta
MSSGKISQVIGPVVDVEFAGGENLPEINNALIVYKDNGDNTKTKIVLEVALELGDGVVRTIAMESTDGLKRGLEVLDTGRPISVPVGKETLGRVFNVIGDTIDLETPFPEDAQRSPIHQKAPAFDELSTSNEILVTGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYGEMKESGVIEKTAMVFGQMNEPPGARMRVALAGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQQGIYPAVDPLASSSRALTPEIVGQEHYEVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRARRIQFFLSQNFNVAEQFTGQPGSYVPVEETVKGFKDILAGQYDNLPEDAFRAVGPIEDVIAKAKKMGY
>NZ_CP047614.1|WP_096039367.1|1622687_1623563_-|F0F1-ATP-synthase-subunit-gamma
MPASLNEIKVRIASTKKTSQITGAMQMVSAAKLTRSEQNAKNFQVYAQKVRAMTTDLIGSELSEGSNNPMLIKRPVKKTGYIVITSDKGLVGGYNSTILKSIMQMLADDHDNQEEYVIIALGGMGADFFKARDINVSYELRGLSDQPTFDEVRKIVNKSVSLYQNELFDELYVCYNHHVNSLTSQVRVEKMLPITDLDENEATSHHQEFELEPDRDTILEQLLPQYAESMIYGSIIDAKTAEHAAGMAAMQAATDNAKNVINDLTIQYNRARQAAITQEITEIVAGASALE
>NZ_CP047614.1|WP_061773979.1|1623698_1625204_-|F0F1-ATP-synthase-subunit-alpha
MAFNANEISSLIKQQIENFTPDFSVAETGVVTYVGDGIARAHGLENAMSGELLEFSNGSYGMAQNLESTDVGIIVLGEFGNIREGDTVKRTGKIMEVPVGEALIGRVVNPLGIPVDGLGEIKTDKTRPVESAAPGVMQRKSVAEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTTIAIDAILNQKGQDMICIYVAIGQKESTVRTQVETLRKYGALDYTIVVTASASQPSPLLYIAPYAGAAMGEEFMYNGKHVLVVYDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSMTALPFIETQAGDISAYIATNVISITDGQIFLENDLFYSGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRLDLASFRELEAFTQFGSDLDTATQAKLNRGRRTVEVLKQPLHEPLAVQYQVLILYALTHGFLDTVPVDDILAFESQLFDFFDANHKDLLDTIVTTKDLPSEDLLDAAIQEFKSSSAFK
>NZ_CP047614.1|WP_061773978.1|1625344_1625872_-|F0F1-ATP-synthase-subunit-delta
MSLIIAQKYSKALLEVAQESQQLEAVLAEVAAFDQVIQSTDLQAFLVDVAYSDDKKHQVIESLQNASSDIFKNFLTILVKNQRMALLPVIIKEIRHQADSLFKISDVDVTSAIALSDAQLSKLETTIKSKFDLNEVTIKNTVDTSILGGVIINARGKIIDASIKSQLTKIAKSII
>NZ_CP047614.1|WP_061773977.1|1625874_1626384_-|F0F1-ATP-synthase-subunit-B
MSPFILLESAPSSMLGNIIVVSGAFLILLVLIKKYAWGAMTSMLDARAKKINDDIDGAENARLQAEQFAAERETELAGSRDEATKIINNAKDTAEANKAKIAAEAAEEARRAKQRANEEIEQSKKEAISGIKGNVADISVKIAEKLIGQTLDASAQSDLIDQYLEKLGE
>NZ_CP047614.1|WP_096039368.1|1626396_1627107_-|F0F1-ATP-synthase-subunit-A
MEKSWSFHLGPVYFDGAVLVMTVLTCAIIFGFVFWASRRMTLRPKGKQNVLEAIIDFVNGVSKDNLGATESRRYSLFIFVLFMFIFVANNIGLMTKIEGSNELTYWKSPTADVGVTLALSLMVSLVATLSSIKRFGFKGYIKHAFLTPAAMLPMNIMEEFINFLSLALRLFGNIFAGEIVIGLITRVGNIEVYYLPLAILLEVAWTAFSLFIGALQAYVFVLLSTMYINEKIAKEE
>NZ_CP047614.1|WP_003140734.1|1627212_1627413_-|F0F1-ATP-synthase-subunit-C
MSLGILALGIAALGAGIGEGLIVSSILNAVSRQPELEGKLRSLMFVGIAFIEGTFFITLAMTFVLK
>NZ_CP047614.1|WP_167840163.1|1628441_1630721_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MSKVLERRQLKNLKKALRWINLPSIFIAYFCVLIYYTVFCFSYLLLGYLIISLLILIWQNGIRTCLKLSMILIGFATICLALQDREAKDFAREMTVTRISPILDTIQVDGDQVSFRGKSGKQTYQVYYRVTTEQEQRYFKQLAQPVVLSISGQLEKASQQRNFNGFDYQHHLKTQNIYRVLTIEQVTGVTRKQTLTLALLRQKAILFSEQHFPRPMSAYMTGLLFGHLGKDFEDMSSIYTSLGIMHLFALSGMQVSFFIDFLRKGMLRLGFRRDVVDWFQIPFSVFYAGLTGFSISVNRSLVQKILANFGIKALDNFSLTLLLLFITAPKFLLTTGGTLSLLFAFVISIFGDRFENLPKYRKLLAESLTLSLCVLPLLILYFHTFQPVSIILTFVFSFLFDILFLPGLSVIFLLAMVTGFTLTQVNLIFQWLEDLIKLTDSWWHYPLVLGKPTALVFLVTLVVTGFLIDHWQNRKVSARLAIILMGLFFITKNPPTPSITMVDVGQGDSIFLQDKFNRRSILIDTGGRIELGKKKKWQERKIAAPAEKTLIPYLKSRGVGQIDTLVLTHTHEDHMGDLLAVIDQIKVKNIIVSQGSLNNAQFVKLLKQTRAKVQVAKVGQRLKIFDSYLEVLYPLTPGDGKNNDSIVLYGKLYGTKFLLTGDLEETGERELLTRYPNLSVDVLKVGHHGSKTSSSESFIEAIRPKVGLISCGLDNRYGHPNMETLTTFQKYEVQTFRTDYHGAIKFKKNSKFWHISTVK
>NZ_CP047614.1|WP_096040495.1|1630659_1631211_-|competence-protein-ComEA
MTKDTDDALVVSSQSSIAAKTDQSADKQTPDKQKSETSKDIMVDIKGAVKKPAVYKVSSHARVNDVVALAGGLTDQADIKSINLAQKVTDEMTIYVASIGEDVTASEVKQAEQGEATTTDKVNINTADLAKLQTLRGVGAKRAQDIIDYREQNGPFKTPEDLGNVKGFGEKTIEKLKESITVD

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Crispr_ID: NZ_CP047614_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047614_4

1972354-1972463

Orphan

Consensus_repeat	Method
TTGTGAGCTGAAATCTAACGAAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047614_4

>merge|NZ_CP047614|4|1972354-1972463|CRISPRCasFinder
TTGTGAGCTGAAATCTAACGAAGTCGTTACGACCTACAGTTTTTTGGCGTAAGGGCGAGGAAGATGACGCGTAGCAATCTTGAGATTGTGAGCTGAAATCTAACGAAGTC

>NZ_CP047614|4|4|1972354-1972463|CRISPRCasFinder
TTGTGAGCTGAAATCTAACGAAGTC	GTTACGACCTACAGTTTTTTGGCGTAAGGGCGAGGAAGATGACGCGTAGCAATCTTGAGA
TTGTGAGCTGAAATCTAACGAAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047614.1\|WP_157738484.1\|1967968_1969201_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|226123
NZ_CP047614.1\|WP_061775092.1\|1977215_1978586_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP047614.1\|WP_031366113.1\|1963221_1963533_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP047614.1\|WP_096039546.1\|1975143_1975806_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143483
NZ_CP047614.1\|WP_096039545.1\|1974300_1974546_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NZ_CP047614.1\|WP_061775094.1\|1979669_1980182_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|377585
NZ_CP047614.1\|WP_096039539.1\|1964513_1965107_-\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP047614.1\|WP_061775091.1\|1975809_1977075_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP047614.1\|WP_167840264.1\|1973503_1974301_-\|cell-division-protein	unknown	unknown	gnl\|CDD\|225185
NZ_CP047614.1\|WP_061775095.1\|1980198_1980969_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|129290
NZ_CP047614.1\|WP_061775089.1\|1974545_1975094_-\|cell-division-protein-SepF	unknown	unknown	gnl\|CDD\|224712
NZ_CP047614.1\|WP_096039548.1\|1978748_1979618_-\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP047614.1\|WP_167840262.1\|1969371_1972170_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP047614.1\|WP_082785426.1\|1964227_1964395_+\|DUF3042-family-protein	unknown	unknown	gnl\|CDD\|371431
NZ_CP047614.1\|WP_082785427.1\|1967652_1967976_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|224894
NZ_CP047614.1\|WP_167840260.1\|1963532_1963820_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP047614.1\|WP_061775082.1\|1965707_1966505_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP047614.1\|WP_061775081.1\|1965191_1965590_-\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|227109
NZ_CP047614.1\|WP_167840261.1\|1966506_1967430_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP047614.1\|WP_167840263.1\|1972685_1973399_-\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377456

Protein	Function_ID	Function_description	E-value
NZ_CP047614.1\|WP_157738484.1\|1967968_1969201_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|226123	COG3595, COG3595, Uncharacterized conserved protein [Function unknown].	1.81072e-09
NZ_CP047614.1\|WP_061775092.1\|1977215_1978586_-\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	4.89975e-141
NZ_CP047614.1\|WP_031366113.1\|1963221_1963533_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	7.78133e-30
NZ_CP047614.1\|WP_096039546.1\|1975143_1975806_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	1.27091e-91
NZ_CP047614.1\|WP_096039545.1\|1974300_1974546_-\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	7.05414e-06
NZ_CP047614.1\|WP_061775094.1\|1979669_1980182_-\|NYN-domain-containing-protein	gnl\|CDD\|377585	pfam05991, NYN_YacP, YacP-like NYN domain. This family consists of bacterial proteins related to YacP. This family is uncharacterized functionally, but it has been suggested that these proteins are nucleases due to them containing a NYN domain. NYN (for N4BP1, YacP-like Nuclease) domains were discovered by Anantharaman and Aravind. Based on gene neighborhoods it was suggested that the bacterial YacP proteins interact with the Ribonuclease III and TrmH methylase in a processome complex that catalyzes the maturation of rRNA and tRNA.	3.18625e-65
NZ_CP047614.1\|WP_096039539.1\|1964513_1965107_-\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	3.44532e-09
NZ_CP047614.1\|WP_061775091.1\|1975809_1977075_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP047614.1\|WP_167840264.1\|1973503_1974301_-\|cell-division-protein	gnl\|CDD\|225185	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown].	4.31227e-83
NZ_CP047614.1\|WP_061775095.1\|1980198_1980969_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|129290	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification].	1.36365e-82
NZ_CP047614.1\|WP_061775089.1\|1974545_1975094_-\|cell-division-protein-SepF	gnl\|CDD\|224712	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown].	5.99213e-32
NZ_CP047614.1\|WP_096039548.1\|1978748_1979618_-\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	7.88243e-94
NZ_CP047614.1\|WP_167840262.1\|1969371_1972170_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP047614.1\|WP_082785426.1\|1964227_1964395_+\|DUF3042-family-protein	gnl\|CDD\|371431	pfam11240, DUF3042, Protein of unknown function (DUF3042). This family of proteins with unknown function appears to be restricted to Firmicutes.	4.73203e-17
NZ_CP047614.1\|WP_082785427.1\|1967652_1967976_-\|PspC-domain-containing-protein	gnl\|CDD\|224894	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms].	1.32773e-21
NZ_CP047614.1\|WP_167840260.1\|1963532_1963820_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	9.70742e-22
NZ_CP047614.1\|WP_061775082.1\|1965707_1966505_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	5.95782e-97
NZ_CP047614.1\|WP_061775081.1\|1965191_1965590_-\|DUF948-domain-containing-protein	gnl\|CDD\|227109	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only].	7.9669e-28
NZ_CP047614.1\|WP_167840261.1\|1966506_1967430_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.02327e-156
NZ_CP047614.1\|WP_167840263.1\|1972685_1973399_-\|DivIVA-domain-containing-protein	gnl\|CDD\|377456	pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.	1.2948e-30

>NZ_CP047614.1|WP_167840262.1|1969371_1972170_-|isoleucine--tRNA-ligase
MKIKETLNLGQTAFPMRAGLPNKEPKMQEAWDEADLYAYRLKENAGKPSFVLHDGPPYANGDIHVGHAMNKISKDIIIRYKNMAGFRAPYVPGWDTHGLPIEQVLTKKGIKRKELDRAEYLRMCRDYALTQVDLQRKGFKSLGVLGDWENPYVTLQPEFEAAQIRVFGKMSENGYIYKGAKPIYWSPSSESSLAEAEIEYQDVRSASIYVAFKATDTKGLLLEDAEFVIWTTTPWTIPSNLGIFAHPDYDYVLVAVNDRKFVIASELLNTVAEKLEWADYQVLQTIKGSDLDGMVAKHPFYDRDTLVMNAEYVTLESGTGLVHVAPGHGEDDYFFSRKYKLGVLSPIDDRGYYTDEAPGLEGLFYDEGNKKVTEWLEENNALLKLEFFTHSYPHDWRTKKPVIFRATPQWFASIDKFRDNILTEVEKVDWVVPWGKTRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGTAIITPETTEHIAQLFAENGSIIWWERDAKDLLPEGFTHPGSPNGEFTKETDIMDVWFDSGSSWNGVLNQREELTYPADLYLEGSDQYRGWFNSSITTSVAVNGIAPYKAVLSQGFVQDAKGRKFSKSLGNGIAPKDVTKQYGADILRLWVASVDNTSDVRVSMDLIGQTSEAYRKIRNTLRFLIANTSDFDKTKDAVAYEDLKGSDKYLLVRLNQVIQSVREAYDRYNFMEVYRTIFNFLTNDMSAFYLDFAKDIVYIETANSTDRRRMQTVMYEILVKLTKLLVPIVPHTSEEIWTYLEQEEEAYAYLTEMPSADVIPDAAEILDFWSAFLEFRTGVHKALEMARDEKVIGKSLEASVMVYPDEAVKVLLASVAETEDVATLLIVSELIVSDQAAPEDAVKVGDTAITVNHAVGGVCQRCRRIDESVGTNANAHLVELCDHCASIVTLEFPEAAAEGFESK
>NZ_CP047614.1|WP_157738484.1|1967968_1969201_-|DUF4097-family-beta-strand-repeat-protein
MNNQKERIMDLMRKGIITESEAIELLEKAGLDNDTNAEEKTTQQTDNDGYQTDSSEAVKQFVNQAGSLVKSLFQSAKKSVDNNVDFSNGFPSLKYVTKSDFKAFDGEIKDITVSATSGDVTVLTKDIEKTIVETTYKVYGGVTEEAMDEFIRDNVVIELDQGELVINVKSKRIVVEMTITLAASQIEDAKFDVVNGIVNIEGLTADDLNVKKVNGDLIVKDGLFKSVVVKAVNGEVRVASDFETADISNVNGEVVVTATAINAENLKVKNVNGDVKISVPENIGVVGYVKTTFGKYKTRIALDNPLEITKNGAALIRTATNSLTLDIATNTGSIWLKDGEPARADSPTAQTATAESAETTDQPEVDEAPVTVEQVEKSETTVVPEADNSKIDTIPGQKSDDESEVNQDHE
>NZ_CP047614.1|WP_082785427.1|1967652_1967976_-|PspC-domain-containing-protein
MSKQLTKSRTNKKISGVIGGLGEYFGWSQDVITIIRIVYAVLALTSFGSLLVIYIVAAIVMPQPTRNDWRNKQDFSEFSQWPGEKPRQNKKMKDVTPFDDDDDWSQF
>NZ_CP047614.1|WP_167840261.1|1966506_1967430_-|HPr-kinase/phosphorylase
MVITVAELLEKIKFDVVYTSETALKKEITTSDVTRPGLEMTGYLEYYTPERIQLFGMKEWSYVQNVIGDNRYDLLKNVVTDATPAIIVARGLPIPDEMISVAKKRDTVLLQSTEPTSRLNGAITAFLDEKLSTRTTVHGVLMDIFGVGVLIQGSSGIGKSETGLELIKRGHRLVADDRVDIYQKDEFTVVGEPAEILRHLIELRGVGIIDVMSLFGAGAVMDSSQVDLSVYLEKFEKGNTYDRLGNGETTIDFSGVAVPQVKIPVTTGRNVSVIIEAAVMNFRAKNMGFDATKMFEERLSNLIAKNS
>NZ_CP047614.1|WP_061775082.1|1965707_1966505_-|prolipoprotein-diacylglyceryl-transferase
MRQLFLAINPIALKLGPLEIRWYALCIVTGVVVAVWLAMKEAPRKKIKPDDILDFILIAFPIAIIGARLYYILFDLGYYRQNPGEIFAIWHGGIAIYGGLIAGAVTLFIFSYYKMIAPLDFLDIAVPGVLVAQAMGRWGNFFNQEAFGKAVKSLNYLPNFIKNQMYIDNSYRTPTFLYESSWNLIGFILVMSLRHHLKWLKSGDIVAFYLVWYGLGRFVIEGMRTDSLMLGPIRVSQALSLILVLVGVVLVLVNHKVNKYFLNKQ
>NZ_CP047614.1|WP_061775081.1|1965191_1965590_-|DUF948-domain-containing-protein
MGDIALIIIAAAVAVLVIFLVVLIVKVMKTVDEVNRTVAIVTQDTDILLKQADTLMAKTNTLLDDVNSKIVTIDPLFTAVADLSESVSKVNRSGNAFATRFKGKAANVGKATAIVTLGRGAGKIFNRKKNKA
>NZ_CP047614.1|WP_096039539.1|1964513_1965107_-|YtxH-domain-containing-protein
MAKKTGFLVGAILGALAGAAAALATAPKEGKKLRQDVKDFYQDYKEDPKAKFDDLKDTAVNFYDEKSGQLVEFSTEKYNDIREKFDNGDISAEKAKDFLVAKKDDIKAKIDSGELSKEKVLDFLALTKEKIADKVNDLKGTVTEQAEEVEDDFELELEQEDLVKKADEISAKADQLVSEASSQVVETADKISDEITD
>NZ_CP047614.1|WP_082785426.1|1964227_1964395_+|DUF3042-family-protein
MKKFSKGIITGVVGTLAATAAGIFAVKKTIIDPELKKEEFINENRRKAARKRVSH
>NZ_CP047614.1|WP_167840260.1|1963532_1963820_-|rhodanese-like-domain-containing-protein
MKNITAEELKTKLSENIRVIDVREGYEYSNGHVPGAINIPMSEIEGRVSEIKEEDYIICQSGARSTNVCQWLEMQGLTITNVQGGTSSFRGVLEY
>NZ_CP047614.1|WP_031366113.1|1963221_1963533_-|rhodanese-like-domain-containing-protein
MFNWFKKIDAISTSDLSVALKTKKMQLIDVRETSEYASGHIKGSRNIPLGQISSFTAPKGVRVAVICQSGMRSRRAYKILKKKGLDVVNVNGGMMAWKGKMVN
>NZ_CP047614.1|WP_167840263.1|1972685_1973399_-|DivIVA-domain-containing-protein
MTLNSLDVQNKTFPTKMRGYNKADVDDFLDLIIRDYDTFAEKMKDQERELKSLRERVEYFEGMKESLNKSIVVAQSAADNLKEQAISEANGVTSEAGQKAQYILESAKKEAGGILNSASDDARRLVKETDELKRKMRIYHQRMMLMVEAQLEGIKSHEWEEILKPTSTYIGDGEEKLKEIIESHEGNTVQISHTVNQLSEILDAVDQETTVESEEPTGPQEPVQTTDSEKETTDSEA
>NZ_CP047614.1|WP_167840264.1|1973503_1974301_-|cell-division-protein
MTQVIYQHFRPSERAFIDKASDWLTSVTDSYSLVITDFLNPRQVFILTTLIQGHPAQDIQIFTSSAIAETEYVKVILAPAYYQLTPADFELACLQIDFASKFVTLKHSQILGTFLGETGLERSKIGDIVVHDTFAQVFVDAKLVSVIMDSVHKIARSGVKIKVIDVGEFMPTIEQTITKTVTMSSLRLDKAVASVFNISRNLAQNLIQSSKAKVNYTEVVRNDFELVDGDLVSIRGFGRLKIVQMLGLTKKDKVRVEVQIISTKK
>NZ_CP047614.1|WP_096039545.1|1974300_1974546_-|YggT-family-protein
MIIYFLYRLITIYEWLLIIYALLSWAPDLRNSQVGRIIGQLSRPFLSIFDRLPLQFAGLDFTIVVAIIALNCIQRLLLIIF
>NZ_CP047614.1|WP_061775089.1|1974545_1975094_-|cell-division-protein-SepF
MALKDYIEKAKDYFNLGDEEDSAPAVRPQVVQSQASTQPQAQVRPQVVTNTSPKPEIKSERKQSRQVDIAANTARPTSPQRPVSAGIVPTIAIKEPAAYDNIMESARVIRNGESVLVNFKNMGDQQARRSIDFLTGVVFTLDGDIQNVGGQIFLLTPNGMTVDAEKELSILAGRNFEGLDTY
>NZ_CP047614.1|WP_096039546.1|1975143_1975806_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTISENVADVLTNVANTETQTGHKTTVIGVTKYVDADQARALVEAGITHIAENRTELFLDKQEKLSDLSITWHLIGTLQRRKVKDVINRVDYFHALDSIKLAHEIDKRANHVIKCFLQVNVSGEASKHGFSPDELAVVLPEISNLSKVEIVGLMTMAPIDASEAELGDIFDKAKSLQMAIASQALPHIPCTELSMGMSQDYQQAILHGATFVRIGSKFFK
>NZ_CP047614.1|WP_061775091.1|1975809_1977075_-|cell-division-protein-FtsZ
MEFSFDEALTQGAIIKVIGVGGAGGNAINRMVEEGVSGVEFIAANTDVQALRASKADTVIQLGPKLTRGLGAGSKPEVGQKAAEESAETIQQALEGADMVFITAGMGGGTGTGAAPVIAQISRELGALTVGVVTRPFGFEGSKRGYFASEGIELLKASVDTLLIISNNNLLEIVDKKTPLKEALQEADNVLRQGVQGVTDLITNPGMINLDFADVKTVMANKGDALMGIGTASGEDRVIEATRKAIYSPLLETTIEGAENVLLNVTGGMDMSLTEAQDASELVIQAAGNDVNILLGTSIDESLKDEIRVTVVATGVSEEELQQATTRQTKAAAPVAEQPRRRVLGSSNLDLSNNNFAPRQKTAAPESSAPESAFGNWDIRKENTVRQTPSESTNTTGVSSFGGATTSSNDEDLDIPPFLKR
>NZ_CP047614.1|WP_061775092.1|1977215_1978586_-|cell-division-protein-FtsA
MAKSGLYTGLDIGTSTIKVLVAEYVSGEMNIIGVGNAKSDGLKNGTIVDIEKVAQAIRKAVNAAEERAGIQITGLNVAVPANRLEVDACQGMVTINSESKEVVESDISQVVASALMRGMMPEREIIAVEPKEFTVDGFSGISDPRGMFGVRLEMKGLVYTGPKTLVHNIRRAVERAGLKVDNIVIAPLALAHHVLNEGEREFGTVVIDLGAGQTTVIAVRDQELQFAHIIPEGGDYITKDISTVLNTSLDQANSLKLNYGEASTERASKEEKFPVNVVGHTEPVEITEFYLSQVIEARLTQIFSRVRQDLERSRGLELPGGIVLLGGAAAMPGVTELATKIIGANVRLYVPNEMGLRNPTFAQVISVVDYVGSRSDIEILVTEAAAGNAVFSEPIVETYHEPAVAAFTDNVYAQTTDDMTYVAPTPQVQPSVPAQDAEPKEGLVDKVRNIFGSMFD
>NZ_CP047614.1|WP_096039548.1|1978748_1979618_-|DegV-family-protein
MTYQIITDSTSDLSDAYVAAHDVAMLGLTVTLEDTTYQTVGPERLTSDVLLAKMATGAKPVTSQINVGQFSELFKSVVKAGNDVLYLGFSSGLSGTYQSAEMAKQLVLDELPSAHITTIDTLAAASGEGYLVKEAVKLRDDGATLEEVVTALQDLIPRLRSWVMADDLYHLARGGRISKTAATVGTLVNIKPIIDVDPAGQLRQVGKIRGKKKALKTLVTNTLTDFDPAYPHIMIGYSGDPDVAEEVKADLLASDLITEVTLTPLGPTIATHTGTGTIAIFSIGKTQRL
>NZ_CP047614.1|WP_061775094.1|1979669_1980182_-|NYN-domain-containing-protein
MKKQLLIVDGYNMIGAWQETHQLFQNNDLEQARDLLLKKLSDYAGFEGLEIICVFDAQFVPGVTSKFHVHNVLVIFTKEDETADSYIEKLAGKCNNVLTTVYVATSDLAEQWVIFSQGAMRIPARELEERVNLRKQDLTRHATSMTTQKPRTSWADAQLDELKKLMFEIE
>NZ_CP047614.1|WP_061775095.1|1980198_1980969_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MKKNQENFNESEHINDTIYGVHAVVDALTENLGNKLYIQDDLRGKNVDKIKALASEKKVGISFVSKEKLKEMADGGVHQGFVLKTSAYAYKELSDLLALTQDAENPLLIVIDGLTDPHNLGSILRTADATGVSGVIIPKHRSVGVTPVVVKTSTGAVNHIPIARVTNLSQTLDKLKAAGFWVFGTDMNGTPHAKWQTQGKVALIIGAEGAGITSNIKKQVDEMITIPMKGHVQSLNAGVAAGILMYEWARNFGQSN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

101084 : 147275

Streptococcus_phage(22.22%)

transposase,integrase

attL 144675:144734|attR 149247:150534

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024047037.1\|101084_102083_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_167839588.1\|102386_103274_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	5.7e-74	53.4
WP_167839589.1\|103395_104529_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	1.1e-138	62.8
WP_167839590.1\|104611_105376_-	hypothetical protein	NA	NA	NA	NA
WP_167839591.1\|105394_105772_-	hypothetical protein	NA	NA	NA	NA
WP_167839592.1\|105930_108450_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_167839593.1\|108565_111181_-	hypothetical protein	NA	NA	NA	NA
WP_167839594.1\|111188_111617_-	hypothetical protein	NA	NA	NA	NA
WP_167840369.1\|111678_113130_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_167839595.1\|113116_113548_-	glycerol-3-phosphate cytidylyltransferase	A0A0K0KVL9	Prochlorococcus_phage	2.8e-10	37.5
WP_167839596.1\|113544_114654_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_167839597.1\|114650_115829_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_167839598.1\|115928_116738_-	ABC transporter permease	NA	NA	NA	NA
WP_167840370.1\|116765_118295_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.5e-10	24.3
WP_167839599.1\|118646_119645_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_167839600.1\|120959_121862_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_167839601.1\|123442_124345_-	LytR family transcriptional regulator	NA	NA	NA	NA
WP_001048115.1\|124580_125579_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_167839170.1\|126101_126755_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_167839169.1\|126782_127061_-	iron-sulfur cluster repair di-iron protein, ric	NA	NA	NA	NA
WP_031367082.1\|127078_127306_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_167839602.1\|127385_129236_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.4e-103	35.7
WP_031367084.1\|129365_129944_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_167839603.1\|130126_130849_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-24	33.7
WP_096039832.1\|130845_132030_+	ABC transporter permease	NA	NA	NA	NA
WP_167839604.1\|132055_132694_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_167839605.1\|134004_137235_+	Cna B-type domain-containing protein	NA	NA	NA	NA
WP_167839606.1\|137236_137968_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_167839607.1\|138031_139540_+	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_064686962.1\|139625_140822_+	class C sortase	NA	NA	NA	NA
WP_010784089.1\|140818_141940_+	class C sortase	NA	NA	NA	NA
WP_167839608.1\|142121_143057_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	7.7e-37	36.5
144675:144734	attL	NA	NA	NA	NA
WP_071519144.1\|144746_145034_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_167839609.1\|145369_145915_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.1e-30	45.7
WP_003136100.1\|146004_146217_-	hypothetical protein	NA	NA	NA	NA
WP_167839610.1\|146219_147275_-\|integrase	site-specific integrase	Q9ZXG6	Leuconostoc_phage	7.1e-31	28.4
149247:150534	attR	NA	NA	NA	NA

DBSCAN-SWA_2

408963 : 445830

Lactococcus_phage(48.72%)

integrase,terminase,head,tail,holin,capsid,portal,protease

attL 411326:411342|attR 445920:445936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167839723.1\|408963_410238_-	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	3.9e-124	55.0
WP_096039992.1\|410281_410905_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.4e-55	54.4
411326:411342	attL	NA	NA	NA	NA
WP_167839724.1\|411473_412556_-\|integrase	site-specific integrase	A0A172LN96	Lactococcus_phage	2.4e-127	61.4
WP_167839725.1\|412678_413230_-	hypothetical protein	A0A097BY93	Leuconostoc_phage	5.6e-11	61.4
WP_167839726.1\|413328_414030_-	helix-turn-helix transcriptional regulator	E8ZDN4	Streptococcus_phage	4.4e-61	49.4
WP_167839727.1\|414223_414451_+	hypothetical protein	A0A1P8BLF6	Lactococcus_phage	4.4e-23	76.0
WP_167839728.1\|414473_415250_+	phage antirepressor	Q38330	Lactococcus_phage	1.0e-79	59.9
WP_167839729.1\|415315_415603_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_167839730.1\|415858_416341_+	hypothetical protein	NA	NA	NA	NA
WP_167839731.1\|416333_416672_+	hypothetical protein	NA	NA	NA	NA
WP_167839732.1\|416664_416925_+	hypothetical protein	NA	NA	NA	NA
WP_167839733.1\|416926_417328_+	hypothetical protein	A0A1X9IGE4	Lactococcus_phage	4.5e-34	56.8
WP_167839734.1\|417339_417915_+	single-stranded DNA-binding protein	A0A097BYA9	Leuconostoc_phage	1.9e-54	58.2
WP_167839735.1\|417919_418372_+	single-stranded DNA-binding protein	Q0ILF5	Lactococcus_phage	2.3e-39	57.9
WP_167839736.1\|418383_418539_+	hypothetical protein	NA	NA	NA	NA
WP_167839737.1\|418540_419287_+	DNA replication protein	A0A1P8BKE9	Lactococcus_phage	4.8e-114	80.5
WP_167839738.1\|419298_419691_+	hypothetical protein	A0A141E189	Streptococcus_phage	1.1e-08	49.2
WP_167839739.1\|419703_420582_+	ATP-binding protein	R9QM21	Lactococcus_phage	2.0e-71	50.0
WP_167839740.1\|420590_421022_+	DUF3850 domain-containing protein	A0A097BYG6	Leuconostoc_phage	3.7e-10	47.3
WP_167839741.1\|421018_421423_+	RusA family crossover junction endodeoxyribonuclease	Q9MC30	Lactococcus_phage	3.8e-41	66.2
WP_167839742.1\|421412_421688_+	hypothetical protein	NA	NA	NA	NA
WP_167839743.1\|421692_422088_+	hypothetical protein	A0A059T7T5	Listeria_phage	2.3e-06	34.6
WP_167839744.1\|422071_422470_+	hypothetical protein	J7KJ21	Streptococcus_phage	2.5e-13	35.9
WP_167839745.1\|422473_422800_+	hypothetical protein	NA	NA	NA	NA
WP_167839746.1\|422792_423011_+	hypothetical protein	NA	NA	NA	NA
WP_167839747.1\|423007_423133_+	hypothetical protein	NA	NA	NA	NA
WP_167839748.1\|423145_423691_+	DUF1642 domain-containing protein	A5GYN8	Lactococcus_phage	2.4e-06	27.9
WP_167839749.1\|423726_423873_+	hypothetical protein	NA	NA	NA	NA
WP_167839750.1\|424121_424607_+	class I SAM-dependent methyltransferase	D2IYU6	Enterococcus_phage	2.3e-48	55.6
WP_167839751.1\|424855_425065_+	hypothetical protein	A0A0S2MYD2	Enterococcus_phage	1.3e-08	50.0
WP_167839550.1\|425071_425440_+	hypothetical protein	NA	NA	NA	NA
WP_167839752.1\|425475_425877_+	hypothetical protein	NA	NA	NA	NA
WP_167839753.1\|427118_427367_+	hypothetical protein	NA	NA	NA	NA
WP_167839754.1\|427375_427531_+	hypothetical protein	NA	NA	NA	NA
WP_167839755.1\|427588_427906_+	HNH endonuclease	Q9AZZ0	Lactococcus_phage	5.6e-24	60.5
WP_167839756.1\|428002_428347_+\|terminase	P27 family phage terminase small subunit	Q9AZY9	Lactococcus_phage	2.1e-32	61.1
WP_167839757.1\|428359_430165_+\|terminase	terminase large subunit	Q9AZY8	Lactococcus_phage	6.7e-247	69.9
WP_167839758.1\|430174_431371_+\|portal	phage portal protein	Q9AZY7	Lactococcus_phage	2.8e-140	62.6
WP_167839759.1\|431370_431973_+\|head,protease	HK97 family phage prohead protease	Q9AZY6	Lactococcus_phage	3.5e-67	66.5
WP_167839760.1\|431935_433168_+\|capsid	phage major capsid protein	Q9AZY5	Lactococcus_phage	1.2e-114	72.5
WP_167839761.1\|433179_433353_+	hypothetical protein	NA	NA	NA	NA
WP_167839762.1\|433345_433636_+	hypothetical protein	Q9AZY3	Lactococcus_phage	9.1e-21	60.7
WP_167839763.1\|433628_433940_+\|head	phage head closure protein	Q9AZY2	Lactococcus_phage	2.7e-15	46.7
WP_167839764.1\|433939_434275_+	HK97 gp10 family phage protein	A0A2H4JAN0	uncultured_Caudovirales_phage	6.0e-16	45.0
WP_167839765.1\|434271_434592_+	hypothetical protein	Q0H234	Geobacillus_phage	1.5e-11	34.9
WP_167839766.1\|434603_435191_+\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	4.5e-43	49.2
WP_167839767.1\|435258_435618_+	hypothetical protein	D2XR24	Bacillus_phage	4.3e-28	52.9
WP_167839768.1\|435932_438695_+	hypothetical protein	Q9AZX7	Lactococcus_phage	3.9e-137	38.1
WP_167839769.1\|438698_439391_+\|tail	phage tail protein	A0A2H4J851	uncultured_Caudovirales_phage	8.2e-36	43.7
WP_167839770.1\|439387_443299_+	hypothetical protein	A0A1C8E983	Bacillus_phage	6.9e-87	46.4
WP_167839771.1\|443445_443673_+	hypothetical protein	Q9AZX0	Lactococcus_phage	7.9e-20	65.8
WP_167839772.1\|443688_444087_+\|holin	phage holin family protein	F0PIJ6	Enterococcus_phage	2.4e-40	62.3
WP_167839773.1\|444175_444367_+	hypothetical protein	NA	NA	NA	NA
WP_167839774.1\|444356_445205_+	peptidoglycan hydrolase	Q9T1D5	Streptococcus_phage	1.3e-51	44.1
WP_167839775.1\|445365_445584_+	hypothetical protein	NA	NA	NA	NA
WP_167839776.1\|445641_445830_+	hypothetical protein	A0A1W6JPV9	Staphylococcus_phage	6.3e-07	55.1
445920:445936	attR	NA	NA	NA	NA

DBSCAN-SWA_3

828610 : 932533

131

Streptococcus_phage(32.79%)

tRNA,integrase,terminase,head,tail,holin,plate,capsid,portal,protease

attL 893081:893101|attR 929068:929088

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167839861.1\|828610_829879_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	46.0
WP_061773849.1\|830107_830497_-	DUF956 family protein	NA	NA	NA	NA
WP_061773850.1\|830573_831485_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_096040261.1\|831504_832314_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_061773852.1\|832331_833321_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_061773853.1\|833570_834467_+	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	1.5e-05	33.7
WP_096040262.1\|834487_835657_+	hypothetical protein	NA	NA	NA	NA
WP_061773855.1\|835897_836473_+	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_096040264.1\|836725_837220_+	EbsA family protein	NA	NA	NA	NA
WP_096040265.1\|837258_837456_-	ferredoxin	NA	NA	NA	NA
WP_061773858.1\|837484_837955_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_061773859.1\|837951_838620_+	(d)CMP kinase	NA	NA	NA	NA
WP_138491912.1\|838671_839955_+	LCP family protein	NA	NA	NA	NA
WP_061773861.1\|840068_840929_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_061773862.1\|840932_842309_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_167839862.1\|842474_843698_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_096040534.1\|844025_845798_+	alpha-glycosidase	NA	NA	NA	NA
WP_061773865.1\|845797_847066_+	alpha-amylase	NA	NA	NA	NA
WP_138491914.1\|847287_848904_+	alpha-glucosidase	NA	NA	NA	NA
WP_167839863.1\|849081_850704_+	alpha-glucosidase	NA	NA	NA	NA
WP_096040270.1\|850859_853127_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_061773869.1\|853128_853791_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_167839864.1\|853954_854929_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.7e-16	30.3
WP_061773871.1\|855047_855719_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-26	34.8
WP_167839865.1\|855755_857111_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	2.4e-15	28.1
WP_061773943.1\|857168_857420_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_061773873.1\|857579_858647_+	ABC transporter permease	NA	NA	NA	NA
WP_061773874.1\|858660_859329_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.3e-33	37.3
WP_096040272.1\|859675_860221_+	acyltransferase family protein	NA	NA	NA	NA
WP_061773877.1\|860244_860763_+	hypothetical protein	NA	NA	NA	NA
WP_167839866.1\|861088_862132_-\|integrase	site-specific integrase	A8ATX2	Listeria_phage	1.1e-44	34.8
WP_167839867.1\|862248_862929_-	NYN domain-containing protein	A0A0R6PGY5	Moraxella_phage	1.7e-41	43.7
WP_167839868.1\|863243_863432_-	hypothetical protein	NA	NA	NA	NA
WP_167840384.1\|863491_864199_-	helix-turn-helix transcriptional regulator	A0A1S5SD15	Streptococcus_phage	4.0e-70	55.4
WP_167839869.1\|864618_865437_-	TIGR02391 family protein	A0A059NT45	Lactococcus_phage	3.2e-79	55.2
WP_167839870.1\|865608_865827_+	helix-turn-helix transcriptional regulator	J7KK54	Streptococcus_phage	1.9e-07	48.4
WP_167839871.1\|865857_866637_+	phage antirepressor Ant	A0A0C5AFE7	Paenibacillus_phage	1.7e-82	61.8
WP_031366573.1\|866687_866879_+	hypothetical protein	Q9AZF4	Lactococcus_phage	5.6e-19	74.6
WP_167839872.1\|867101_867374_-	DUF3892 domain-containing protein	A0A059NT53	Lactococcus_phage	8.0e-11	42.5
WP_167839873.1\|867564_867750_+	helix-turn-helix transcriptional regulator	A0A1S5SDG0	Streptococcus_phage	8.7e-09	47.5
WP_031366575.1\|867819_868080_+	hypothetical protein	NA	NA	NA	NA
WP_167839874.1\|868076_868298_+	hypothetical protein	NA	NA	NA	NA
WP_167839875.1\|868449_869268_+	recombinase RecT	A0A1L2JXR5	Streptococcus_phage	3.7e-75	65.3
WP_167839876.1\|869269_870307_+	DUF1351 domain-containing protein	A0A2H4J618	uncultured_Caudovirales_phage	2.6e-17	29.0
WP_167839877.1\|870306_871107_+	hypothetical protein	A0A1S5S9Y4	Streptococcus_phage	7.2e-100	66.9
WP_167839878.1\|871317_871509_+	hypothetical protein	NA	NA	NA	NA
WP_167839879.1\|871510_872347_+	hypothetical protein	A0A1P8BKN4	Lactococcus_phage	3.4e-20	30.8
WP_167839880.1\|872340_872613_+	hypothetical protein	NA	NA	NA	NA
WP_167839881.1\|872650_872866_+	hypothetical protein	NA	NA	NA	NA
WP_167839882.1\|872852_873266_+	RusA family crossover junction endodeoxyribonuclease	A0A220G9T0	Streptococcus_phage	3.6e-23	48.1
WP_096824046.1\|873258_873693_+	transcriptional regulator	NA	NA	NA	NA
WP_167840385.1\|873872_874301_+	universal stress protein	NA	NA	NA	NA
WP_031366590.1\|874358_874790_+\|terminase	terminase small subunit	D7RWC4	Brochothrix_phage	2.5e-43	66.2
WP_167839883.1\|874782_876069_+\|terminase	PBSX family phage terminase large subunit	D7RWC5	Brochothrix_phage	1.8e-206	84.0
WP_167839884.1\|876077_877472_+\|portal	phage portal protein	A0A0M4S669	Bacillus_phage	3.3e-84	42.6
WP_167839885.1\|877404_878952_+\|capsid	minor capsid protein	A0A2H4J4W7	uncultured_Caudovirales_phage	2.0e-21	28.3
WP_167839886.1\|878935_879088_+	hypothetical protein	NA	NA	NA	NA
WP_167839887.1\|879185_879434_+	hypothetical protein	A0A1P8BM59	Lactococcus_phage	3.5e-37	90.2
WP_167839888.1\|879551_880130_+	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_167839889.1\|880133_881033_+\|capsid	capsid protein	U3PDP8	Lactobacillus_phage	7.1e-72	51.4
WP_167839890.1\|881050_881332_+	hypothetical protein	NA	NA	NA	NA
WP_167839891.1\|881340_881667_+	hypothetical protein	NA	NA	NA	NA
WP_167839892.1\|881650_881977_+	hypothetical protein	NA	NA	NA	NA
WP_167839893.1\|881969_882383_+	HK97 gp10 family phage protein	A0A0A7AQU9	Bacillus_phage	5.3e-14	41.0
WP_167839894.1\|882382_882754_+	hypothetical protein	NA	NA	NA	NA
WP_167839895.1\|882755_883310_+	hypothetical protein	NA	NA	NA	NA
WP_167839896.1\|883360_883651_+	hypothetical protein	NA	NA	NA	NA
WP_167839897.1\|883677_883965_+	hypothetical protein	NA	NA	NA	NA
WP_167839898.1\|883964_888098_+	hypothetical protein	A0A1D3SNL5	Enterococcus_phage	1.1e-55	33.6
WP_167839899.1\|888098_889499_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_167839900.1\|889495_890539_+	hypothetical protein	Q5K5I4	Oenococcus_phage	5.0e-45	33.8
WP_167839901.1\|890551_891340_+	hypothetical protein	H9EED1	Lactococcus_phage	1.0e-37	39.8
WP_167839902.1\|891390_891792_+\|holin	phage holin family protein	F0PIJ6	Enterococcus_phage	2.2e-41	63.8
WP_167839903.1\|891788_893054_+	LysM peptidoglycan-binding domain-containing protein	Q8LTP4	Lactococcus_phage	8.9e-137	59.5
893081:893101	attL	NA	NA	NA	NA
WP_167839904.1\|893171_893342_+	hypothetical protein	NA	NA	NA	NA
WP_167839905.1\|893358_893682_+	glutaredoxin family protein	NA	NA	NA	NA
WP_167839906.1\|893844_894972_-\|integrase	site-specific integrase	Q9AZR0	Lactococcus_phage	4.0e-112	54.1
WP_167839907.1\|895303_895987_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_167840386.1\|896107_896503_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_167839908.1\|896672_897122_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_167839909.1\|897288_897891_-	hypothetical protein	NA	NA	NA	NA
WP_167839910.1\|897943_898288_-	helix-turn-helix transcriptional regulator	A0A141E1S0	Streptococcus_phage	1.7e-21	52.3
WP_167839911.1\|898442_898676_+	helix-turn-helix transcriptional regulator	A0A1Q1PVY0	Staphylococcus_phage	3.2e-16	62.0
WP_167839912.1\|898738_898891_+	hypothetical protein	NA	NA	NA	NA
WP_167839913.1\|898871_899066_-	hypothetical protein	NA	NA	NA	NA
WP_167839914.1\|899122_899287_-	YjzC family protein	NA	NA	NA	NA
WP_167839915.1\|899437_899623_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_031365319.1\|899904_900231_+	DUF771 domain-containing protein	Q8LTN9	Lactococcus_phage	4.4e-16	38.7
WP_167839916.1\|900274_900658_+	hypothetical protein	NA	NA	NA	NA
WP_167839917.1\|900635_900818_+	hypothetical protein	NA	NA	NA	NA
WP_167839918.1\|900819_901212_+	hypothetical protein	J7KJ21	Streptococcus_phage	1.5e-13	38.2
WP_167840387.1\|901382_902249_+	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	2.4e-93	68.6
WP_167839919.1\|902261_902663_+	hypothetical protein	NA	NA	NA	NA
WP_167839920.1\|902856_903126_+	hypothetical protein	NA	NA	NA	NA
WP_138491596.1\|903137_903425_+	hypothetical protein	NA	NA	NA	NA
WP_167839921.1\|903620_903890_+	hypothetical protein	NA	NA	NA	NA
WP_167839922.1\|903886_904843_+	DNA (cytosine-5-)-methyltransferase	H7BVD3	unidentified_phage	1.1e-94	55.0
WP_167839923.1\|904829_905288_+	DUF3850 domain-containing protein	A0A097BYG6	Leuconostoc_phage	6.9e-07	37.9
WP_167839924.1\|905272_906076_+	DNA adenine methylase	R4IBV6	Listeria_phage	4.5e-78	53.4
WP_167839925.1\|906573_907416_+	hypothetical protein	H7BW41	unidentified_phage	4.2e-10	25.7
WP_167839926.1\|907417_907861_+	hypothetical protein	NA	NA	NA	NA
WP_167839927.1\|907884_908229_+	hypothetical protein	NA	NA	NA	NA
WP_167839928.1\|908194_908500_+	HNH endonuclease	A0A1S5SFB3	Streptococcus_phage	9.5e-29	60.6
WP_167839929.1\|908605_908911_+\|terminase	P27 family phage terminase small subunit	A3F640	Streptococcus_phage	2.4e-19	55.7
WP_167840388.1\|908915_910646_+\|terminase	terminase large subunit	A3F641	Streptococcus_phage	1.0e-231	65.5
WP_167839930.1\|910764_911889_+\|portal	phage portal protein	A3F643	Streptococcus_phage	8.1e-57	35.8
WP_167840389.1\|911888_912653_+\|protease	Clp protease ClpP	A3F644	Streptococcus_phage	3.3e-54	42.4
WP_167839931.1\|912671_913802_+\|capsid	phage major capsid protein	A3F645	Streptococcus_phage	5.0e-91	49.9
WP_167839932.1\|913803_914214_+	hypothetical protein	NA	NA	NA	NA
WP_167839933.1\|914221_914539_+	hypothetical protein	A3F647	Streptococcus_phage	6.7e-09	48.7
WP_167839934.1\|914513_914888_+\|head,tail	phage head-tail adapter protein	A0A1S5SFE6	Streptococcus_phage	1.3e-19	38.3
WP_167839935.1\|914889_915285_+	hypothetical protein	A3F649	Streptococcus_phage	2.7e-15	41.4
WP_167839936.1\|915281_915659_+	hypothetical protein	NA	NA	NA	NA
WP_167839937.1\|915674_916265_+\|tail	phage tail protein	A0A1S5SF75	Streptococcus_phage	4.3e-41	47.2
WP_167839938.1\|916314_916608_+	hypothetical protein	A3F652	Streptococcus_phage	2.7e-12	40.0
WP_167839939.1\|916655_916799_+	hypothetical protein	NA	NA	NA	NA
WP_167839940.1\|916912_917083_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_167839941.1\|917113_917506_+	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CYJ8	Paenibacillus_phage	2.1e-12	37.7
WP_167839942.1\|917579_921887_+\|tail	phage tail tape measure protein	A3F654	Streptococcus_phage	4.5e-148	40.7
WP_167839943.1\|921883_922609_+\|tail	phage tail protein	NA	NA	NA	NA
WP_167839944.1\|922676_926186_+	hypothetical protein	Q938K1	Temperate_phage	1.1e-56	33.8
WP_167839945.1\|926172_926586_+	DUF1617 family protein	Q9AZX1	Lactococcus_phage	7.1e-19	61.4
WP_167839946.1\|926663_926933_-	hypothetical protein	NA	NA	NA	NA
WP_167839947.1\|926993_927263_+	hypothetical protein	NA	NA	NA	NA
WP_167840390.1\|927274_927619_+	hypothetical protein	A0A0P0IZF9	Lactobacillus_phage	4.4e-14	61.8
WP_167839948.1\|927630_927843_+	hypothetical protein	NA	NA	NA	NA
WP_167839949.1\|927932_928613_+	CHAP domain-containing protein	D3W0F3	Lactococcus_phage	6.7e-22	35.9
WP_167840391.1\|928715_929036_+	LysM peptidoglycan-binding domain-containing protein	A5GYL4	Lactococcus_phage	8.5e-28	62.6
WP_167839950.1\|929558_930467_+\|protease	serine protease	NA	NA	NA	NA
929068:929088	attR	NA	NA	NA	NA
WP_167839951.1\|930490_930697_+	hypothetical protein	NA	NA	NA	NA
WP_096040273.1\|931438_932533_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	7.4e-31	30.7

DBSCAN-SWA_4

1077457 : 1162579

Bacillus_phage(20.0%)

tRNA,integrase,terminase,head,tail,holin,plate,capsid,portal,protease

attL 1076122:1076138|attR 1156938:1156954

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1076122:1076138	attL	NA	NA	NA	NA
WP_061775007.1\|1077457_1077976_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_096040349.1\|1077972_1078590_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_167839977.1\|1078579_1080979_+	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	1.3e-56	28.9
WP_138491571.1\|1081116_1081482_+	hypothetical protein	NA	NA	NA	NA
WP_156470231.1\|1081576_1081741_-	hypothetical protein	NA	NA	NA	NA
WP_004261808.1\|1082185_1082527_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_061775011.1\|1082646_1083132_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_061775012.1\|1083221_1083476_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_096040351.1\|1083736_1084330_+	hypothetical protein	NA	NA	NA	NA
WP_061775014.1\|1084326_1085028_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_167839978.1\|1085034_1086279_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_096040353.1\|1086355_1088014_+	acetolactate synthase AlsS	NA	NA	NA	NA
WP_061775017.1\|1088085_1088796_+	acetolactate decarboxylase	NA	NA	NA	NA
WP_096040354.1\|1088779_1089994_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_096040355.1\|1090168_1091674_+	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA
WP_096040542.1\|1091737_1092385_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_096040356.1\|1092399_1093413_-	lactonase family protein	NA	NA	NA	NA
WP_061775021.1\|1093658_1094816_+	AI-2E family transporter	NA	NA	NA	NA
WP_167839979.1\|1095006_1095996_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_096040358.1\|1096000_1096576_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_061775024.1\|1096572_1096944_+	PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM	NA	NA	NA	NA
WP_167839980.1\|1096984_1098436_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_061775026.1\|1098489_1098954_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_167839981.1\|1099116_1100613_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_167840394.1\|1100645_1102481_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA
WP_061774226.1\|1102480_1103194_+	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	1.3e-28	33.7
WP_096040544.1\|1103263_1104760_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	4.9e-25	35.1
WP_167372321.1\|1104833_1105538_-	response regulator	W8CYM9	Bacillus_phage	4.0e-22	32.9
WP_167839982.1\|1105927_1106065_+	hypothetical protein	NA	NA	NA	NA
WP_167839983.1\|1106139_1107345_-\|integrase	site-specific integrase	A0A1X9I6A9	Streptococcus_phage	2.8e-79	40.8
WP_167839984.1\|1107403_1107862_-	hypothetical protein	C5J978	Streptococcus_phage	1.4e-10	37.8
WP_167839985.1\|1107930_1108314_-	helix-turn-helix transcriptional regulator	E9LUS8	Lactobacillus_phage	1.1e-08	46.3
WP_167839986.1\|1108468_1108711_+	helix-turn-helix transcriptional regulator	Q9AZW2	Lactococcus_phage	1.0e-09	46.1
WP_167839987.1\|1108896_1109148_+	hypothetical protein	NA	NA	NA	NA
WP_167839988.1\|1109136_1109358_-	hypothetical protein	NA	NA	NA	NA
WP_167839989.1\|1109506_1109692_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_167839990.1\|1109733_1109940_+	hypothetical protein	NA	NA	NA	NA
WP_138491592.1\|1110263_1110530_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA
WP_167839991.1\|1110602_1110977_+	hypothetical protein	NA	NA	NA	NA
WP_167839992.1\|1110963_1111149_+	hypothetical protein	NA	NA	NA	NA
WP_167839993.1\|1111148_1112102_+	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	8.3e-87	60.1
WP_167839994.1\|1112114_1112513_+	hypothetical protein	NA	NA	NA	NA
WP_167839995.1\|1112509_1112650_+	hypothetical protein	NA	NA	NA	NA
WP_167839996.1\|1112646_1112847_+	hypothetical protein	NA	NA	NA	NA
WP_167839997.1\|1112846_1113128_+	hypothetical protein	NA	NA	NA	NA
WP_167839551.1\|1113117_1113459_+	hypothetical protein	NA	NA	NA	NA
WP_167839998.1\|1113445_1113673_+	hypothetical protein	NA	NA	NA	NA
WP_167839999.1\|1113669_1113927_+	LemA family protein	A0A1X9IGG1	Lactococcus_phage	6.0e-08	44.0
WP_167840000.1\|1113907_1114222_+	LemA family protein	A0A1X9IGG1	Lactococcus_phage	2.3e-25	54.4
WP_167840001.1\|1114230_1115022_+	hypothetical protein	NA	NA	NA	NA
WP_167840002.1\|1115248_1116088_+	hypothetical protein	NA	NA	NA	NA
WP_167840003.1\|1116514_1116958_+	hypothetical protein	NA	NA	NA	NA
WP_167840004.1\|1116975_1117410_+	transcriptional regulator	NA	NA	NA	NA
WP_167840005.1\|1117470_1117836_+	hypothetical protein	A0A1C8EAA0	Bacillus_phage	4.5e-09	45.4
WP_167840006.1\|1117832_1118201_+	HNH endonuclease	A0A1B1P7N1	Bacillus_phage	3.8e-48	70.7
WP_167840007.1\|1118302_1118728_+\|terminase	P27 family phage terminase small subunit	A0A1B0T688	Bacillus_phage	1.9e-46	65.7
WP_167840008.1\|1118724_1120449_+\|terminase	terminase large subunit	A0A1C8E985	Bacillus_phage	9.8e-296	84.5
WP_167840009.1\|1120462_1121665_+\|portal	phage portal protein	A0A1B2APW5	Phage_Wrath	2.1e-172	75.1
WP_138491613.1\|1121627_1122209_+\|head,protease	HK97 family phage prohead protease	A0A1B2APW1	Phage_Wrath	2.5e-70	71.4
WP_167840010.1\|1122208_1123540_+\|capsid	phage major capsid protein	A0A1B2APY9	Phage_Wrath	7.9e-128	70.1
WP_138491709.1\|1123553_1123808_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J865	uncultured_Caudovirales_phage	8.8e-28	73.2
WP_138491615.1\|1123791_1124115_+\|head,tail	phage head-tail joining protein	A0A0N7IRA3	Lactobacillus_phage	7.3e-19	51.5
WP_138491616.1\|1124104_1124446_+	hypothetical protein	NA	NA	NA	NA
WP_031365342.1\|1124435_1124801_+	HK97 gp10 family phage protein	A0A2H4JDG0	uncultured_Caudovirales_phage	7.0e-18	40.5
WP_167840011.1\|1124803_1125445_+\|tail	phage tail protein	A0A0P0I7R6	Lactobacillus_phage	2.3e-24	34.9
WP_167840012.1\|1125444_1125903_+	hypothetical protein	NA	NA	NA	NA
WP_167840013.1\|1126091_1128401_+\|tail	phage tail tape measure protein	Q8W5Z7	Listeria_phage	5.1e-74	44.6
WP_031365346.1\|1128397_1129111_+	hypothetical protein	NA	NA	NA	NA
WP_167840014.1\|1129107_1131741_+	peptidoglycan DD-metalloendopeptidase family protein	A0A1L2JXP5	Streptococcus_phage	4.9e-222	69.3
WP_167840015.1\|1131758_1132568_+\|plate	BppU family phage baseplate upper protein	Q9AYV5	Lactococcus_phage	3.2e-23	32.2
WP_167840395.1\|1132872_1133127_+	hypothetical protein	NA	NA	NA	NA
WP_167840016.1\|1133128_1133557_+	hypothetical protein	V9VFP7	Lactococcus_phage	1.1e-19	38.8
WP_167840396.1\|1133578_1133974_+\|holin	phage holin family protein	F0PIJ6	Enterococcus_phage	2.7e-39	61.1
WP_167840017.1\|1133974_1135303_+	LysM peptidoglycan-binding domain-containing protein	A0A1P8BMS7	Lactococcus_phage	7.6e-155	61.7
WP_167840018.1\|1135404_1135599_+	hypothetical protein	NA	NA	NA	NA
WP_167840019.1\|1135694_1136738_+	CHAP domain-containing protein	NA	NA	NA	NA
WP_143188721.1\|1136969_1137875_+	hypothetical protein	A0A0B5CYL8	Listeria_phage	1.0e-78	48.8
WP_096040362.1\|1139652_1140333_+	hypothetical protein	NA	NA	NA	NA
WP_138491633.1\|1140325_1140850_+	hypothetical protein	NA	NA	NA	NA
WP_167840020.1\|1140846_1142142_+	glycosyltransferase	NA	NA	NA	NA
WP_138491636.1\|1142141_1142444_+	hypothetical protein	NA	NA	NA	NA
WP_061774231.1\|1142557_1142887_+	putative DNA-binding protein	NA	NA	NA	NA
WP_167840021.1\|1143027_1144548_+	signal recognition particle protein	NA	NA	NA	NA
WP_061774233.1\|1144624_1145107_+	shikimate kinase	NA	NA	NA	NA
WP_096040366.1\|1145103_1145931_+	prephenate dehydratase	NA	NA	NA	NA
WP_096040367.1\|1146124_1146472_+	YxeA family protein	NA	NA	NA	NA
WP_061774236.1\|1146471_1147224_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.6e-31	38.6
WP_167840022.1\|1147223_1149200_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_096040369.1\|1149299_1149956_+	response regulator transcription factor	NA	NA	NA	NA
WP_096040370.1\|1149952_1150909_+	sensor histidine kinase	NA	NA	NA	NA
WP_167840023.1\|1151187_1161039_+	hypothetical protein	NA	NA	NA	NA
1156938:1156954	attR	NA	NA	NA	NA
WP_167840024.1\|1161232_1162579_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA

DBSCAN-SWA_5

1201946 : 1210868

Enterococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061774280.1\|1201946_1203764_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.7e-88	37.2
WP_096040406.1\|1203885_1204578_-	helix-turn-helix transcriptional regulator	A0A1S5SD15	Streptococcus_phage	1.4e-64	50.0
WP_061774282.1\|1204677_1205319_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_061774283.1\|1205422_1205641_+	glutaredoxin-like protein NrdH	A0A1W6JHV4	Lactococcus_phage	1.3e-11	47.6
WP_061774284.1\|1205637_1205994_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	D9J0S1	Brochothrix_phage	3.7e-16	35.2
WP_061774285.1\|1205998_1208152_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	5.2e-254	60.4
WP_167372353.1\|1208272_1209232_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.1e-123	67.1
WP_096040408.1\|1209287_1210157_-	glutathione-dependent reductase	NA	NA	NA	NA
WP_004260832.1\|1210192_1210330_-	hypothetical protein	NA	NA	NA	NA
WP_061774287.1\|1210457_1210868_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	3.1e-30	45.9

DBSCAN-SWA_6

1500614 : 1539411

Lactococcus_phage(38.24%)

transposase,integrase,terminase,tail,holin,plate,capsid,portal

attL 1502329:1502356|attR 1539433:1539460

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071519405.1\|1500614_1501613_+\|transposase	IS5 family transposase	NA	NA	NA	NA
1502329:1502356	attL	NA	NA	NA	NA
WP_167840102.1\|1502724_1503471_-	hypothetical protein	NA	NA	NA	NA
WP_167840103.1\|1503474_1503897_-	hypothetical protein	E9LUK8	Lactobacillus_phage	5.8e-08	29.5
WP_167840104.1\|1503902_1504886_-	AAA family ATPase	E9LUK9	Lactobacillus_phage	2.6e-43	39.9
WP_167840105.1\|1505324_1505495_-	hypothetical protein	NA	NA	NA	NA
WP_167840106.1\|1505577_1505901_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_167840107.1\|1505917_1506088_-	hypothetical protein	A0A182BQ76	Lactococcus_phage	3.1e-05	61.1
WP_167840108.1\|1506205_1507471_-	LysM peptidoglycan-binding domain-containing protein	Q8LTP4	Lactococcus_phage	3.4e-136	59.3
WP_167840109.1\|1507471_1507681_-\|holin	holin	A0A1U9WRD5	Streptococcus_virus	1.4e-10	53.8
WP_167840110.1\|1507686_1507929_-\|holin	holin	D2J075	Enterococcus_phage	1.1e-08	45.9
WP_167840111.1\|1507943_1508732_-	hypothetical protein	H9EH56	Lactococcus_phage	1.2e-27	35.6
WP_167840112.1\|1508745_1509789_-	hypothetical protein	Q5K5I4	Oenococcus_phage	1.1e-44	34.1
WP_167840113.1\|1509785_1511177_-\|plate	phage baseplate protein	B6D7I8	Listeria_phage	2.7e-22	24.0
WP_167840114.1\|1511178_1513443_-\|tail	phage tail protein	A5GYM8	Lactococcus_phage	6.4e-77	68.4
WP_143188716.1\|1513432_1513681_-	hypothetical protein	NA	NA	NA	NA
WP_167840115.1\|1513749_1514271_-	hypothetical protein	D2J068	Enterococcus_phage	1.2e-07	27.5
WP_167840116.1\|1514267_1514510_-	hypothetical protein	NA	NA	NA	NA
WP_167840117.1\|1514565_1515186_-	hypothetical protein	A0A1S5S9Y8	Streptococcus_phage	6.4e-48	48.7
WP_031366601.1\|1515186_1515564_-	hypothetical protein	NA	NA	NA	NA
WP_167840118.1\|1515563_1515962_-	HK97 gp10 family phage protein	A0A1S5SAB8	Streptococcus_phage	7.3e-37	59.4
WP_031366599.1\|1515961_1516279_-	hypothetical protein	A0A1S5S9Y9	Streptococcus_phage	4.2e-11	35.6
WP_167840119.1\|1516275_1516806_-	hypothetical protein	D2J063	Enterococcus_phage	2.7e-39	48.3
WP_167840120.1\|1516836_1517118_-	hypothetical protein	NA	NA	NA	NA
WP_167840121.1\|1517129_1518044_-\|capsid	capsid protein	Q20DD4	Lactobacillus_phage	2.2e-81	53.4
WP_167840122.1\|1518061_1518625_-	scaffolding protein	D2J060	Enterococcus_phage	7.9e-29	42.9
WP_167839886.1\|1518810_1518963_-	hypothetical protein	NA	NA	NA	NA
WP_167840123.1\|1518995_1519214_-	hypothetical protein	A0A1P8BLD4	Lactococcus_phage	3.3e-31	84.7
WP_167840124.1\|1519217_1520921_-	hypothetical protein	A0A1P8BLD7	Lactococcus_phage	4.4e-163	52.2
WP_167840125.1\|1520913_1522368_-\|portal	phage portal protein	A0A1S5SAI0	Streptococcus_phage	4.6e-145	55.3
WP_167840126.1\|1522382_1523645_-\|terminase	PBSX family phage terminase large subunit	D7RWC5	Brochothrix_phage	1.4e-206	82.9
WP_167840127.1\|1523637_1524069_-\|terminase	terminase small subunit	D7RWC4	Brochothrix_phage	4.3e-43	66.4
WP_167840385.1\|1524126_1524555_-	universal stress protein	NA	NA	NA	NA
WP_096824046.1\|1524734_1525169_-	transcriptional regulator	NA	NA	NA	NA
WP_167840128.1\|1525172_1525643_-	hypothetical protein	NA	NA	NA	NA
WP_167840129.1\|1525899_1526055_+	hypothetical protein	NA	NA	NA	NA
WP_167840130.1\|1526141_1526324_-	hypothetical protein	NA	NA	NA	NA
WP_167840131.1\|1526331_1527330_-	hypothetical protein	A0A1P8BKN4	Lactococcus_phage	1.4e-20	33.9
WP_167839878.1\|1527331_1527523_-	hypothetical protein	NA	NA	NA	NA
WP_167839877.1\|1527733_1528534_-	hypothetical protein	A0A1S5S9Y4	Streptococcus_phage	7.2e-100	66.9
WP_167839876.1\|1528533_1529571_-	DUF1351 domain-containing protein	A0A2H4J618	uncultured_Caudovirales_phage	2.6e-17	29.0
WP_167839875.1\|1529572_1530391_-	recombinase RecT	A0A1L2JXR5	Streptococcus_phage	3.7e-75	65.3
WP_167840132.1\|1530542_1530764_-	hypothetical protein	NA	NA	NA	NA
WP_167840133.1\|1530775_1531009_-	hypothetical protein	NA	NA	NA	NA
WP_167840134.1\|1531081_1531267_-	helix-turn-helix transcriptional regulator	A0A1X9I6I3	Streptococcus_phage	1.7e-09	52.5
WP_096040071.1\|1531459_1531732_+	DUF3892 domain-containing protein	A0A059NT53	Lactococcus_phage	2.1e-11	43.7
WP_061774530.1\|1531739_1531940_-	hypothetical protein	NA	NA	NA	NA
WP_031366573.1\|1531954_1532146_-	hypothetical protein	Q9AZF4	Lactococcus_phage	5.6e-19	74.6
WP_167840135.1\|1532256_1532823_+	hypothetical protein	NA	NA	NA	NA
WP_167840136.1\|1532963_1533746_-	phage antirepressor Ant	A0A2I7SC24	Paenibacillus_phage	6.8e-71	56.3
WP_167840137.1\|1533758_1533965_-	hypothetical protein	A0A182BQC7	Lactococcus_phage	1.1e-23	84.6
WP_167840138.1\|1534251_1534584_+	helix-turn-helix domain-containing protein	A0A182BQC8	Lactococcus_phage	5.9e-24	52.7
WP_167840139.1\|1534597_1535032_+	hypothetical protein	NA	NA	NA	NA
WP_096040068.1\|1535086_1535461_+	PH domain-containing protein	A5GYQ0	Lactococcus_phage	1.7e-56	90.3
WP_167840140.1\|1535570_1537223_+	ATP-binding protein	NA	NA	NA	NA
WP_167840141.1\|1537273_1538143_+	DNA adenine methylase	NA	NA	NA	NA
WP_167840142.1\|1538280_1539411_+\|integrase	site-specific integrase	A0A1B1IMP1	Lactococcus_phage	1.1e-42	33.2
1539433:1539460	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1857956 : 1864292

Streptococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167840223.1\|1857956_1858883_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	4.8e-124	73.9
WP_061775217.1\|1859016_1859628_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	4.0e-66	57.1
WP_061775224.1\|1859823_1860660_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_167372337.1\|1860783_1861644_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.1e-97	67.2
WP_096040505.1\|1861643_1861970_-	DUF972 family protein	M1PFV3	Streptococcus_phage	4.4e-16	41.9
WP_061775215.1\|1861981_1862752_-	stage 0 sporulation family protein	NA	NA	NA	NA
WP_061775214.1\|1862794_1863658_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.8e-65	47.1
WP_061775213.1\|1863644_1864292_-	dTMP kinase	M1PSC7	Streptococcus_phage	7.6e-68	60.0

DBSCAN-SWA_8

2010281 : 2079800

Streptococcus_phage(42.86%)

transposase,tRNA,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167840266.1\|2010281_2010992_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_096039564.1\|2011076_2011979_-	aquaporin family protein	NA	NA	NA	NA
WP_167840267.1\|2012249_2014562_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA
WP_096039566.1\|2014558_2015281_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_096039567.1\|2015499_2015631_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_167839074.1\|2015790_2016279_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_096039569.1\|2016281_2017730_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_167840268.1\|2017874_2018357_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_061774662.1\|2018343_2019105_-	TIGR00266 family protein	NA	NA	NA	NA
WP_096039571.1\|2019160_2019841_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_096039572.1\|2019837_2020911_-	TRAM domain-containing protein	NA	NA	NA	NA
WP_096039573.1\|2021139_2022501_-	DNA repair protein RadA	NA	NA	NA	NA
WP_096039574.1\|2022502_2022949_-	dUTP diphosphatase	Q332E8	Clostridium_botulinum_C_phage	1.0e-31	49.3
WP_167840269.1\|2023025_2024783_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.9e-43	29.5
WP_167840270.1\|2024775_2026494_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-46	28.1
WP_167840271.1\|2026892_2027891_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_071519144.1\|2028024_2028312_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_167840272.1\|2028647_2029193_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.6e-29	44.3
WP_167840273.1\|2029423_2030056_-	FusB/FusC family EF-G-binding protein	NA	NA	NA	NA
WP_167840274.1\|2030291_2030978_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.2e-123	96.4
WP_167840410.1\|2031055_2031418_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_167840275.1\|2031674_2032655_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	7.7e-96	54.4
WP_167840276.1\|2033591_2034545_-	ribonucleotide-diphosphate reductase subunit beta	NA	NA	NA	NA
WP_167840277.1\|2034554_2036711_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	5.1e-241	57.8
WP_167840278.1\|2036745_2037513_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_096040578.1\|2037670_2038342_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_167840279.1\|2038412_2039093_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	6.5e-126	98.2
WP_167840280.1\|2039403_2040309_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_138492587.1\|2040751_2041276_-	hypothetical protein	NA	NA	NA	NA
WP_031367160.1\|2041414_2042095_+\|transposase	IS6-like element ISS1N family transposase	A0A1X9I6C6	Streptococcus_phage	2.9e-110	84.5
WP_167840281.1\|2042273_2042837_+	peroxiredoxin	NA	NA	NA	NA
WP_167840282.1\|2042896_2044426_+	alkyl hydroperoxide reductase subunit F	A0A1W6JNB4	Lactococcus_phage	5.3e-19	27.8
WP_047916692.1\|2044761_2045442_+\|transposase	IS6-like element ISS1N family transposase	A0A1X9I6C6	Streptococcus_phage	5.0e-110	84.1
WP_003108064.1\|2046066_2046489_+	cupin domain-containing protein	Q2I8C5	Bacillus_phage	3.1e-38	61.0
WP_031367160.1\|2047101_2047782_+\|transposase	IS6-like element ISS1N family transposase	A0A1X9I6C6	Streptococcus_phage	2.9e-110	84.5
WP_167840283.1\|2047794_2048061_-	hypothetical protein	NA	NA	NA	NA
WP_167840284.1\|2048026_2048461_-	helix-turn-helix transcriptional regulator	A0A1B0RXB1	Streptococcus_phage	1.9e-14	43.6
WP_167840411.1\|2048757_2049444_+	helix-turn-helix transcriptional regulator	A0A1S5S8S8	Streptococcus_phage	1.2e-66	56.2
WP_167840285.1\|2049458_2050028_+	SHOCT domain-containing protein	NA	NA	NA	NA
WP_167840286.1\|2051220_2051769_+	hypothetical protein	NA	NA	NA	NA
WP_003139724.1\|2051859_2052021_+	hypothetical protein	NA	NA	NA	NA
WP_167840287.1\|2052218_2052548_+	hypothetical protein	NA	NA	NA	NA
WP_167840288.1\|2052586_2052856_+	hypothetical protein	NA	NA	NA	NA
WP_047916783.1\|2053048_2053396_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_167840289.1\|2053411_2055040_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_167840290.1\|2056353_2057619_+	dihydroorotase	NA	NA	NA	NA
WP_047916776.1\|2058082_2058847_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA
WP_068164079.1\|2059531_2060482_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.5e-35	34.0
WP_167840291.1\|2060952_2061633_+\|transposase	IS6-like element ISS1N family transposase	A0A1X9I6C6	Streptococcus_phage	4.2e-109	84.1
WP_167840292.1\|2062127_2062730_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_167840293.1\|2062737_2063247_-	HXXEE domain-containing protein	NA	NA	NA	NA
WP_167840294.1\|2063583_2064597_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_167840295.1\|2064719_2065400_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.2e-108	83.9
WP_167840296.1\|2066372_2067197_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_031367147.1\|2067409_2069572_-	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	4.3e-06	41.1
WP_024047037.1\|2070783_2071782_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_081144397.1\|2071948_2072953_+	galactose mutarotase	NA	NA	NA	NA
WP_068164079.1\|2073730_2074681_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.5e-35	34.0
WP_003135293.1\|2075385_2075535_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_003138753.1\|2075553_2075721_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_096039593.1\|2075819_2077061_-	MFS transporter	NA	NA	NA	NA
WP_167840297.1\|2077136_2079800_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	4.2e-144	39.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047614

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection