CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015195	Pasteurellaceae bacterium RH1A chromosome, complete genome	3 crisprs	cas1,cas9,DEDDh,csa3,DinG,PD-DExK,WYL	0	15	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015195_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015195_1

384092-385911

TypeII

Consensus_repeat	Method
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CRT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CRISPRCasFinder
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	PILER-CR

27 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP015195_1

>merge|NZ_CP015195|1|384092-385911|CRT,CRISPRCasFinder,PILER-CR
TTTTGGATGATTTTCCTTATTTCGCAGTGCTACAATGAGCAGGCGGCGGGTAATGTGGTTGTCGGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGTTATGGTTAAATCTGATTTTTGGGCGTGATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGCCATCACGTTTTGCGATTAAGTTAAATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGCTCACCAAGGCGTTTAAATTGAGGTTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTCGAAATTAACGATAAAGTTATCAAATTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAACACCCCGCAATGCGAGGTGATGATGTACGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAACCTCACTTCAACCATCGCCCTAACACAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGGGGTATATCCCATTAAATCAGACCTCAGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCAAGAATTACCTATTAGAACGGAACTCAGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATAGAATGGGTTGTATTTTTAGCTCTAAAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGGTGTATAACCAACTTGGTCAGAACTCAAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCTAAACCTTAAACTAATTTAAATTTGTACTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCAAATGATAAAGCTTATGGTGAAACATTTATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTGCAAGGTTGCGTGCTTTGTAAGAGCAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGATTGTTCCGCTTTTTGCAATGTTGCACGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCAAGTATCCCGCCTTCGGAACGGATATCGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTGCCAATCCTGCGGTCATCAAGACCATGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCCCCGCTAACATTCAGGGAATGTTAAATAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGTAAGGTATATGTTTAAGCTTCTTATCGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATCCCCATTCATACGCTTGTAACCTATTGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTGACGGCCCTGGTATGGCGTATGTAGTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTATCCGAAGATGTGAACTTTACCCTACCCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGGTTGCGGCTGTTGGTAGGGTGTCCATAAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAGAACCTCATCTAGTACGGAAACGTTAATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCGGTAGCGGTAGCGGTAGTTTTCACAAAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGAGGCTCTTTAGGGCCCGATTCATTGGCTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATCGCTATCAGTGCTATATGCCCCCGGTTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

>NZ_CP015195|1|1|384092-385911|CRT
TTTTGGATGATTTTCCTTATTTCGCAGTGCTACAAT	GAGCAGGCGGCGGGTAATGTGGTTGTCGGT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GTTATGGTTAAATCTGATTTTTGGGCGTGAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TCGCCATCACGTTTTGCGATTAAGTTAAAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TCGCTCACCAAGGCGTTTAAATTGAGGTTA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTCGAAATTAACGATAAAGTTATCAAATTG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	AACACCCCGCAATGCGAGGTGATGATGTAC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	AACCTCACTTCAACCATCGCCCTAACACAG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGGGTATATCCCATTAAATCAGACCTCAGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CAAGAATTACCTATTAGAACGGAACTCAGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATAGAATGGGTTGTATTTTTAGCTCTAAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGTGTATAACCAACTTGGTCAGAACTCAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CTAAACCTTAAACTAATTTAAATTTGTACT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CAAATGATAAAGCTTATGGTGAAACATTTAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTTGCAAGGTTGCGTGCTTTGTAAGAGCAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CGATTGTTCCGCTTTTTGCAATGTTGCACG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCAAGTATCCCGCCTTCGGAACGGATATCG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTGCCAATCCTGCGGTCATCAAGACCATGC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCCCCGCTAACATTCAGGGAATGTTAAATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CGTAAGGTATATGTTTAAGCTTCTTATCGG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATCCCCATTCATACGCTTGTAACCTATTGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTGACGGCCCTGGTATGGCGTATGTAGTTG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTATCCGAAGATGTGAACTTTACCCTACCC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGTTGCGGCTGTTGGTAGGGTGTCCATAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TAGAACCTCATCTAGTACGGAAACGTTAAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCGGTAGCGGTAGCGGTAGTTTTCACAAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GAGGCTCTTTAGGGCCCGATTCATTGGCTA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATCGCTATCAGTGCTATATGCCCCCGGTTA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

>NZ_CP015195|1|1|384158-385911|CRISPRCasFinder
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GTTATGGTTAAATCTGATTTTTGGGCGTGAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TCGCCATCACGTTTTGCGATTAAGTTAAAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TCGCTCACCAAGGCGTTTAAATTGAGGTTA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTCGAAATTAACGATAAAGTTATCAAATTG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	AACACCCCGCAATGCGAGGTGATGATGTAC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	AACCTCACTTCAACCATCGCCCTAACACAG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGGGTATATCCCATTAAATCAGACCTCAGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CAAGAATTACCTATTAGAACGGAACTCAGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATAGAATGGGTTGTATTTTTAGCTCTAAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGTGTATAACCAACTTGGTCAGAACTCAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CTAAACCTTAAACTAATTTAAATTTGTACT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CAAATGATAAAGCTTATGGTGAAACATTTAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTTGCAAGGTTGCGTGCTTTGTAAGAGCAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CGATTGTTCCGCTTTTTGCAATGTTGCACG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCAAGTATCCCGCCTTCGGAACGGATATCG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTGCCAATCCTGCGGTCATCAAGACCATGC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCCCCGCTAACATTCAGGGAATGTTAAATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CGTAAGGTATATGTTTAAGCTTCTTATCGG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATCCCCATTCATACGCTTGTAACCTATTGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTGACGGCCCTGGTATGGCGTATGTAGTTG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTATCCGAAGATGTGAACTTTACCCTACCC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGTTGCGGCTGTTGGTAGGGTGTCCATAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TAGAACCTCATCTAGTACGGAAACGTTAAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCGGTAGCGGTAGCGGTAGTTTTCACAAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GAGGCTCTTTAGGGCCCGATTCATTGGCTA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATCGCTATCAGTGCTATATGCCCCCGGTTA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

>NZ_CP015195|1|1|384819-385911|PILER-CR
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CTAAACCTTAAACTAATTTAAATTTGTACT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CAAATGATAAAGCTTATGGTGAAACATTTAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTTGCAAGGTTGCGTGCTTTGTAAGAGCAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CGATTGTTCCGCTTTTTGCAATGTTGCACG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCAAGTATCCCGCCTTCGGAACGGATATCG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTGCCAATCCTGCGGTCATCAAGACCATGC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCCCCGCTAACATTCAGGGAATGTTAAATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CGTAAGGTATATGTTTAAGCTTCTTATCGG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATCCCCATTCATACGCTTGTAACCTATTGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTGACGGCCCTGGTATGGCGTATGTAGTTG
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTATCCGAAGATGTGAACTTTACCCTACCC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGTTGCGGCTGTTGGTAGGGTGTCCATAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TAGAACCTCATCTAGTACGGAAACGTTAAT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GCGGTAGCGGTAGCGGTAGTTTTCACAAAA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GAGGCTCTTTAGGGCCCGATTCATTGGCTA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATCGCTATCAGTGCTATATGCCCCCGGTTA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015195.1\|WP_168110573.1\|378315_379740_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP015195.1\|WP_168110580.1\|387533_390713_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP015195.1\|WP_168110572.1\|376275_378186_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP015195.1\|WP_168110571.1\|373513_376171_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP015195.1\|WP_168110584.1\|400420_402364_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP015195.1\|WP_168110575.1\|380766_381717_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP015195.1\|WP_168110587.1\|403061_403439_-\|sulfurtransferase-complex-subunit-TusD	unknown	unknown	gnl\|CDD\|178928
NZ_CP015195.1\|WP_168110586.1\|402692_403058_-\|sulfurtransferase-complex-subunit-TusC	unknown	unknown	gnl\|CDD\|200229
NZ_CP015195.1\|WP_168110581.1\|396891_397521_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP015195.1\|WP_168110577.1\|383423_384062_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP015195.1\|WP_168110574.1\|379781_380693_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP015195.1\|WP_168110585.1\|402420_402693_-\|sulfurtransferase-complex-subunit-TusB	unknown	unknown	gnl\|CDD\|225079
NZ_CP015195.1\|WP_168110569.1\|369616_370948_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838
NZ_CP015195.1\|WP_168110582.1\|397672_399052_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|182502
NZ_CP015195.1\|WP_168110576.1\|381878_383231_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340903
NZ_CP015195.1\|WP_168110579.1\|386534_387449_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP015195.1\|WP_168110578.1\|386215_386542_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP015195.1\|WP_168110583.1\|399115_400270_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|224771
NZ_CP015195.1\|WP_168110568.1\|368836_369355_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP015195.1\|WP_168110570.1\|370967_373043_+\|adhesin	unknown	unknown	gnl\|CDD\|375681

Protein	Function_ID	Function_description	E-value
NZ_CP015195.1\|WP_168110573.1\|378315_379740_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP015195.1\|WP_168110580.1\|387533_390713_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP015195.1\|WP_168110572.1\|376275_378186_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP015195.1\|WP_168110571.1\|373513_376171_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP015195.1\|WP_168110584.1\|400420_402364_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	3.7571e-37
NZ_CP015195.1\|WP_168110575.1\|380766_381717_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	0
NZ_CP015195.1\|WP_168110587.1\|403061_403439_-\|sulfurtransferase-complex-subunit-TusD	gnl\|CDD\|178928	PRK00207, PRK00207, sulfurtransferase complex subunit TusD.	3.4068e-65
NZ_CP015195.1\|WP_168110586.1\|402692_403058_-\|sulfurtransferase-complex-subunit-TusC	gnl\|CDD\|200229	TIGR03010, sulf_tusC_dsrF, sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate. [Protein synthesis, tRNA and rRNA base modification].	3.00717e-49
NZ_CP015195.1\|WP_168110581.1\|396891_397521_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.12407e-34
NZ_CP015195.1\|WP_168110577.1\|383423_384062_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	5.52428e-120
NZ_CP015195.1\|WP_168110574.1\|379781_380693_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	2.00306e-178
NZ_CP015195.1\|WP_168110585.1\|402420_402693_-\|sulfurtransferase-complex-subunit-TusB	gnl\|CDD\|225079	COG2168, DsrH, Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism].	9.5417e-18
NZ_CP015195.1\|WP_168110569.1\|369616_370948_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
NZ_CP015195.1\|WP_168110582.1\|397672_399052_+\|MFS-transporter	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	1.85522e-111
NZ_CP015195.1\|WP_168110576.1\|381878_383231_+\|MFS-transporter	gnl\|CDD\|340903	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters. Glycerol-3-Phosphate Transporter (also called GlpT or G-3-P permease) is responsible for glycerol-3-phosphate uptake. It is part of the Organophosphate:Pi antiporter (OPA) family of integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The GlpT group belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.21297e-161
NZ_CP015195.1\|WP_168110579.1\|386534_387449_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.4797e-127
NZ_CP015195.1\|WP_168110578.1\|386215_386542_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.96928e-53
NZ_CP015195.1\|WP_168110583.1\|399115_400270_+\|c-type-cytochrome	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	1.04759e-72
NZ_CP015195.1\|WP_168110568.1\|368836_369355_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	2.61099e-116
NZ_CP015195.1\|WP_168110570.1\|370967_373043_+\|adhesin	gnl\|CDD\|375681	pfam18254, HMw1_D2, HMW1 domain 2. This domain is found in Actinobacillus pleuropneumoniae HMW1C (ApHMW1C). HMW1 adhesin is an N-linked glycoprotein that mediates adherence to respiratory epithelium through N-glycosylation of protein acceptor sites and O-glycosylation of sugar acceptor sites. This domain forms an all alpha domain (AAD) when combined with the N-terminal domain. The AAD interacts extensively with the C-terminal GT-B fold in order to create a unique groove with the potential to accommodate the acceptor protein.	1.67371e-53

>NZ_CP015195.1|WP_168110577.1|383423_384062_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MSYTTAQLVEKLGQLKIVPVIALEKAEDILPLAETLAENGLPVAEITFRSEAAQEAIRQLRQARPDFLIAAGTVLTAEQVVQAKNAGADWIVTPGFNPKIVQLCQDLNLPITPGVNNPMAIEAALDMGIETVKFFPAEASGGVKMIKALVAPYAMLQIMPTGGVGVQNIKDYLAIPNVIACGGSWFVEKSLIREHNWQEIGRLVREAVALTR
>NZ_CP015195.1|WP_168110576.1|381878_383231_+|MFS-transporter
MLPFLKSKPGTPVPEAEIRDRYNRLRWHALFGIFIGYAAYYILRNNFLLSSPELISEFGFTKKDIGFISGTMLIVYGLSKGVMSAFADKSNPKHFMIFGLMMSALVNLMMGFSASFWVFLFLCILNGIFQGMGAGPAYVVLASWFPRKSRGVTTAMFNISHNVGGGLVAPIAGASIAWLGQEHWQAAHFVVPTALATLVAIIFYIFGTGRTYNEGLPPTSKILGTEQEELVVTKDENVSLSTWEIFRDYILKDINVWFVSFIDVFTYMIRFGVLTWLPLYLLETKGFSKGQMATAFAIFEWAAIPSTLLAGWLTDTYFKGRRMPLAIITLVGVGAAMFAYWGGTDLLTVTIGAGIIGCLIYVPMFLSSLQTIELVPSFAAGSATGLRGLLSYILGSFSGTALFGILAERFGWDAGFYLLLFAVVGCIFCCYMTHLGVLRLERKKLAQAKA
>NZ_CP015195.1|WP_168110575.1|380766_381717_+|methionyl-tRNA-formyltransferase
MNKLRIIFAGTPDFAATHLQALLDSDHEVIAVYTQPDRPAGRGNKLQASPVKLLAEANGLPVYQPKSLRKEEAQAELAALKADVMVVVAYGLILPEAVLNAPRLGCLNVHGSLLPRWRGAAPIQRAIWAGDKETGITIMQMDVGLDTGHMLHKVTTPIEPTETSASLYHKLAQLAPPALLEVLNGLESGKFLPEKQDDELANYAEKLTKEEAKLDWNLPAQQLERNIRAFNPAPVAYLTVEVNGKEERVKVYGAEVLPHQAKEAGTVLAFDRKGLQIATSAGVLNITQLQPQGKKPMTVQDFLNGRGDWFEVGERI
>NZ_CP015195.1|WP_168110574.1|379781_380693_-|N-acetylmuramic-acid-6-phosphate-etherase
MSEQNLLQTLSQLITEQRNPNSQHLDQLSALEIVTLINQEDKLVPLAIEKALPQIAQAVEKIVASFEAGGRLVYVGAGTSGRLGVLDASECPPTFGVSPDMVKGLIAGGDHALRHPIEGAEDKKEAGQNDLKAINFGPQDTLVGIAASGRTPYVLGAMEYAKGLGATVVSIASNPQSAMAQVADIAIDTIVGPEVLTGSSRMKSGTAQKLVLNMLTTASMVLMGKCYQNLMVDVQASNEKLKARAIRIVMQATDCSREEAQTALQAAGNQAKLAIMMVLTGLNKDEAQALLDKNQGKLQKAML
>NZ_CP015195.1|WP_168110573.1|378315_379740_+|dihydrolipoyl-dehydrogenase
MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYPTLGGVCLNVGCIPSKALLHVAKVIEEAKHAEKNGVTFGEPTIDLDKVRAGKEAVVAKLTGGLAGMAKQRKVTVVEGLATFADSNTLVARDRDGNPTTIKFDNAIIAAGSRPIQLPFIPHEDPRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNSLGSEVEVVEMFDQVIPAADKDVVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPNGKLIDAGKAGVNVDDRGFIAVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGQKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASECSEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNAKAKKK
>NZ_CP015195.1|WP_168110572.1|376275_378186_+|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MSKQIQIPDIGSDEVTVTEVMVKVGDTIEADQSVINVEGDKASMEVPAPEAGVVKEVLVKVGDKVTTGTPMLVLEAAGSAEAPAAAPAQAVAPAPAAAPAAASVVEVNVPDIGSDEVNVTDIMVKVGDTVEVDQSIINVEGDKASMEVPAPVAGVVKEILINVGDKVVTGKLIMKFEVAGAAPAAAAPQAEAAAPAAPVASAVKDVNVPDIGGDEVNVTEIMVKVGDTIAEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMRFEVQGAAPAPAAAPAQAAPAPQAAAPAAAPAQSGNVSGLSQEQVVASAGYAHATPVIRRLAREFGVNLDRVKGTGRKGRIVKEDIQAYVKSAVQVFEDIKAGKAPAGSGVANGAGLGLLPWPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITDLENFRKEQNKLAEKQKLDVKITPVVFIMKAVAKALEAFPRFNSSISEDGQKLTLKKYINIGVAVDTPNGLVVPVFKNVNKKGIIELSRELMEVSKKARDGKLTASDMQGGCFTISSLGGIGTTHFAPIVNAPEVAILGVSKSEMAPVWNGKEFEPRLMLPVSLSFDHRVIDGADGARFLSYMNGVLADIRRLVM
>NZ_CP015195.1|WP_168110571.1|373513_376171_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSELLAHDVDPFETQEWLDSVNSLVKEEGSERAQFIIQQVMQHARTQGVSLPSGVTTDYVNTIPVSEQPVYPGNQEIERRIRSAVRWNAIAMVLRSQKKDLDLGGHISTFQSAATMYEVCFNHFFKAATDKDGGDLVYSQGHAAPGIYARSFLEGRLTAEQLDNFRQEAFTDGLSSYPHPKLMPDYWQFSTVSMGLGPVNAIYQARFLKYLENRGIKDTSGQTVYAFLGDGEMDEIESKGALTVAGREKLDNLIFVISCNLQRLDGPVNGNGKIVQELEGLFTGAGWEVIKVLWGSGWDKLFAKDTSGKLAQLMMEVVDGDYLTFKSKDGAYVREHFFGRYPETAALVADMTDDEIWALRRGAHDSEKMYAAFERAKKSNKPAVILAHQVKGYKIPEAESKNTAHQSKKMSAESLRGFRDYFHLPLTDEQVENLEYVTFPEGSEEYNYLHGHRQALDGYLPARRKQFDIEYKVPALADFQALLEEQPRGISTTMAFSRVLNTLLKDKNIGKTIVPIIADEARTFGMEGLFRQIGIYNPAGQNYVPSDRDLVAYYREAKDGQVLQEGINELGATASWVAAATSYSVNNQPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGGTSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGINRMYGEKQEDVFYYITTLNEVTEQPAMPAGAEEGIRKGLYKFETVEGKGKGRVQLLSSGAIMRHVREAAKILANDYGVTADVFSAPSFNELAREGNDAARWNLLHPTEEQRVPYVAQVLADVPTVASTDYMKLYAEQIRAFVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALTQLANEGTVDRKVVAEAITKFGLNVDRINPLYA
>NZ_CP015195.1|WP_168110570.1|370967_373043_+|adhesin
MSEQQAKSLSIEALEQAIAAKDYEGACNQLLAILGKLDSNFGGIQGIDFEMPSQLSSLEQDKVVYFCSRMAVAITALFSDPALQVSVSGAQRFLSLQRWINMIFASSPFVNADHILKTYNVNPNPEHALDIHLAPTEAALIKFCILYLPESNVVVNLDSLWSLNPELCASLAFALQSPRFIATEQAFGKRATLLKWFPEKLAQIKNLNNVPSSISHDVYMHCSYDVDANKHLVKKSLNQVIRRHILECGWKDRNVSRIGQTNGKPVMVVLLEHFHSAHSIYRTHSTSMIAAREHFHLIGLGNNSVDQKGREVFDEFHLVEGENMLAKMNFVRDICEKHEAAVFYMPSIGMDLSTIFVSNTRLAPIQAVALGHPATTHSDFIEYVVVEDDYVGSEDCFSETLLRLPKDALPYVPSSLAPSSVEYRLREHPEVVNIGIASTTMKLNPFFLKALQAIRDRAKVKVHFHFALGQSSGVTHPYVERFIKSYLGDSATAHAHSPYDQYLRILHNCDMMLNPFPFGNTNGIIDMVTLGLVGICKTGPEVHEHIDEGLFKRLGLPEWLIADSADQYVERAIYLAENHKERLALRRHIIESNGLQTLFTGDPSPMGKIFLEKVEALGAKPAPAKKATKASKTTQAKVQEAAPKEAVKPKAETKPKAAAKPRTKAAASKEAVKQELLKEVAKKASRTKKAS
>NZ_CP015195.1|WP_168110569.1|369616_370948_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MNSAPNIGFVSLGCPKNLVDSERILTELRSDGYNIIPTYENADLVIVNTCGFIDSAVQESLETIGEALDANGRVIVTGCLGAKENQIREVHPKVLEITGPHSYEAVMSHVHKYVPKPEYNPYVNLVPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRPIHQVLDEAKRLADAGVKELLVVSQDTSAYALDTKRKEGTKTVFWNGMPIKNDLLTLCKQLGTLGIWVRLHYVYPYPHVDDLIPLMAEGKILPYLDIPLQHASPKILKAMKRPGSVERTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVEGAVATEMADQVPEEVKEERFHRFMQLQQEISAARLQQKVGKTLQVIVDEIDEEGIIGRSMADAPEIDGVVYVDNASGIEVKVGQIISVQITQADEYDLWGSC
>NZ_CP015195.1|WP_168110568.1|368836_369355_-|ATP-dependent-protease-subunit-HslV
MTTIVCVRRDGKVAIGGDGQATLGNCVEKGTVRKVRRMYNDKVVTGFAGSTADAFILRELFERKLELHQGHLIKSAVELAKEWRSDRALRRLEAMMIVANESEFLLVSGSGDVIEPEADVLAIGSGGNYAKSAALALLRNSDLSAKEIVEQALKIAGEIDIYSNQNHVIEQV
>NZ_CP015195.1|WP_168110578.1|386215_386542_-|CRISPR-associated-endonuclease-Cas2
MSEAKFMRLIVFFDLPVKTKLQRKIANQFRKFLLKDGYQMLQLSVYARIIRGRDALEKHSKRLTQNLPEDGSIRCLEITEKQFASMAVLLGEVKPQEKKVNSDQLLLF
>NZ_CP015195.1|WP_168110579.1|386534_387449_-|type-II-CRISPR-associated-endonuclease-Cas1
MSWRSILISKGGKLSLKQKQMLIWQEEQEFSVPLEDIAIIVVENRETVITTPLLSALALNGITLLTCDDQFLPCGQWLPFGQYHRQLKTLKLQLEMSQPLKKQLWQQLVQQKIRNQAFVLEQAGEISTAQRLLAMANEVKSGDKDNLEAQAAQSYFIQLFGKAFHRKQENQINAHLNYAYMVLRSAVARSLVLYGWLPTLGLNHHSELNPFNLADDFIEPFRPLVDLKVWELVEKDKLDYGLTPSTKQNLIKLLNHQMSLNQQAVSVLTAIDRTVASLQVALLNKNAKLLKLPQMLPLAEHQYE
>NZ_CP015195.1|WP_168110580.1|387533_390713_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MQHLNYILGLDLGIASVGWSVVEIDKEENPTRLIDLGVRTFERAEVPKTGESLALSRRLARSTRRLIARRANRLLKAKCLLKQENLLLPEDFIDRRTLKPLPNNVWQLRVAGLERKLERLEWAAVLLHLLKRRGYLSQRKNESQGADKEKGALLSGIATNSELLAQADYRTPAELALKKFYEEEGHIRNQRGAYTHTFSRLSLLDELQQLFAQQRQLGNPFTSQHLEEQLSELLLWQKPALSGEAILKMLGKCTLEPEHYKAAKNTYSAERFVWLTKLNNLRLQENGSERALTDAERHLLLEQPYQKAKLTYAQVRSILDLPDTTIFKGLRYQLNAESDAEKATLMELKAWHTIRKVLEKAGLETEWQGLKTKPELLDQIGTAFSLYKTDEDISAHLDGKLPPAVLEALLGGLNFDKFIQLSLQSLGKILPLMEKGLRYDEACQQVYGDHLGKREQKNHQLLPAIPAEEIRNPVVLRTLSQARKVINAIVRLYGSPARVHIETGREVGKSFDERRKIEKNQLENQAKRQQAVQKFKEFFPDFVGEPKAKDILALRLYEEQQGKCLYSGKALDLHRLREKGYVEIDHALPFSRTWDDSFNNKVLVLAGENQAKGNKTPYEWLDGEANSERWRLFVALVSGSRFSYTKKQRILTKKLDDEGFIQRNLNDTRYVARFLMNFIEEQMALTGQGKKRVFASNGQITALLRGRWGLSKVREENDRHHALDAVVVACTTRAMQKKITDFVRYKEMNAFSGEHIDRTTGEIQTIHFPEPWAYFRNEVMIRVFDEDPQTALSHLLPSRPQAQHKFVAPLFVSRSPNRKMTGQGHMETVKSAKRLSEGVSVQRVPLTALKLKDLESMVNREREPALYQALKDRLEAFKDDPAKAFAQPFFKAGGQEVKAVRVERVQKSGVLVRQNKGVADNASMVRVDVFEKAGKFYLVPIYTWQVAEGILPNRAIIQGKDESEWEEITEAHTFKFSLFANDLVKLTTKKGITFGYYAGLDRATGNITIREHDLEKSKGKNGEYRSLGVKTALSFEKYQVDPLGKNIRPCKTTKRQGVK
>NZ_CP015195.1|WP_168110581.1|396891_397521_-|glutathione-S-transferase-family-protein
MKLYGLNGACSFVPHTALEWAKARQNQSYEFEAVSREFIKSPEFLAFNPRGAVPVLVDGDLVLSQNQAILHYLDECFPEAKLFGSTTVRDKAKASRWLAYFNGDVHKSFVPLFRLPSYAEGNEELTKTIRQQAGLQILEQLAVANEHLQSHAFFGETLCVADIYLYTMLNWCRKLGLDFSHLEQLEPFMQRVEADAGVDAVRVQEGLKG
>NZ_CP015195.1|WP_168110582.1|397672_399052_+|MFS-transporter
MSVDKTDYRGLGWVAAIAFFMQALDSTILNTALPAISQSLNTSPLNMQMAIISYALTVAALIPLSGWLADRFGTLKIFRLAIGLFVLGSLACALSYSLNSLITARILQGLGGALMMPVARLAIIRSVPKAQLVATWNLMATAGLVGPILGPMVGGWLATHASWHWIFLINLPIGLFGLLISGHYMPNLTREAISFDGRGFMLFAASLVLLTLGLEMMAEEMAKINQALLLLALGLAFMGLYALHDHYSPKAILPLKLFRVRTFGLSMLANLFIRLCNAGVPFLVPLMLQLAYGYSADKAGLLVAPMALGAILAKRAIVPTLKRFGYKRTLQANALAMSLTIASLALLHAQSPLWLICLILLLCGVCNSFMFTCINTLTVSDLSDSQASAGATFLSVIQQVGIGIGIAVASVILNALRASQLPLEQAFSATFVSVAGFGLVLLALLSCLRPQDGQQITSK
>NZ_CP015195.1|WP_168110583.1|399115_400270_+|c-type-cytochrome
MKTAFTLCLMLTSTPLLALEKEARTMPAGGMDKALMGQILFFDDRLSFHGNQNCASCHSPDTAFVDLRETSAQQMVSQGDDPSKFGRRNSPTMLYAKFAPDFHFDEVAQEYVGGQFWDGRAKNLAQQSGMPPLDPLEMGMPNQLEVAKRLYSLPMYRQLFTQFYGQEVWQSYEGVYAAMEDALATFQTEKRLLAPFDSKYDKVLEGKASLTALEEKGRELFFDKSKTSCSNCHQSQGEKEIFTDFRYHNLQVPRNLFVIEHNGLPADFEDLGLAENPHIKPEHQQAAKYKFKTPTLRNVAVTAPYMHNGIFRELRTVIEYIDHFNNPARALNPETGKPWEKLPFAENLPQEKLKARALTDEDIEALEAFLKTLTDERYEPLLKD
>NZ_CP015195.1|WP_168110584.1|400420_402364_+|OmpA-family-protein
MNFDLSQLLQGPVRELILNQVSNKFGLSHEQGGNLLTKGLSMVLGGMAQQAGSKDGASNLFDLIKNVSLEGNPLDVLAGKSNLAANSHLIDMAKNLLPSIFGSRADSIVDHLANSNNTTPMAVKGLLGALVPVVLAFFKNKIAGGLGLAGFASLLGEQTKKVAGNLDSSSLAALGFTGASFNDVLGNVAKVAGLGAAATGAATAAKATVAEEKKSGGLGKWLLGAAVLLAAFFGIKSCSDKQATTTTAAPANNTAAAPAPEAKPATNVEVAPKTVDGLGNLAWLKTDKDFTVSGTVNNEGVKTSILDAFKGLAGSLPLVDKLVVDANAPQSSFSNFAGLAGLFKDFPGVSGAFVDTTLNLLGQVESGEAKASLLDKAKAVLGNLFAINTDGVKVADPIAKLVDGLGNFGWAQTAKGLALSGTVNNDGVKASILDGFKGLNLPVLDELVVDANATQSNFTNFAGLAGLVKDFPGVKGSFADTVLNLVGQVSKGEEKVELAAKAKALLGDAFSINTDEVTIAQAVEAEEPAAEVIADMNAAKLNLDIVFNTGSADISPRYFNRLNAFAKHLIENNRSGEISGFTDNTGNAEANQKLSEARANAVRNYLLNQGVPADALNAVGYGQANPVADNGTAEGRAQNRRIEFNAR
>NZ_CP015195.1|WP_168110585.1|402420_402693_-|sulfurtransferase-complex-subunit-TusB
MLYTLSQAQYDLPSLTAQLALLGQDDALLLWQDGVLQAVKNPQIFANLAHVFVLKEDLLARNLPLPTACQAISLKELVTITERFYPQVAY
>NZ_CP015195.1|WP_168110586.1|402692_403058_-|sulfurtransferase-complex-subunit-TusC
MKYKLAILFTQPPFGSSASREGLDALLAASAFCEEDQIAICFWGDGVFNLLAGQKPEQILQKDHISTFKLIELYDLTQCFACEEDLASRHLIQADWIIDFQTQSQADIMAILNQSEKVLTF
>NZ_CP015195.1|WP_168110587.1|403061_403439_-|sulfurtransferase-complex-subunit-TusD
MRYVLAIKSPVYGSQAAYLAYQFAQVLLEEGHEIRQVFFFQNGVSHANSLINPASDEFNLQTAWQNLAQTHRLSLHLCIAAAQRRGVVNQETAKNGEDNLAQGFTLAGLGEFSQAVLEADRLITF

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Crispr_ID: NZ_CP015195_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015195_2

585656-585733

Orphan

Consensus_repeat	Method
CCGCTTGTGTTTGTCACCAGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015195_2

>merge|NZ_CP015195|2|585656-585733|CRISPRCasFinder
CCGCTTGTGTTTGTCACCAGCCTGGAGGCTGGCGACATCGGGGGCGGGATAGTTGCCGCTTGTGTTTGTTACCAGCCT

>NZ_CP015195|2|2|585656-585733|CRISPRCasFinder
CCGCTTGTGTTTGTCACCAGCCT	GGAGGCTGGCGACATCGGGGGCGGGATAGTTG
CCGCTTGTGTTTGTTACCAGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015195.1\|WP_168110732.1\|577086_578079_+\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|225304
NZ_CP015195.1\|WP_168110740.1\|586404_587835_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP015195.1\|WP_168110742.1\|589530_591186_+\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_CP015195.1\|WP_168110730.1\|575447_576209_-\|uridine-phosphorylase	unknown	unknown	gnl\|CDD\|183018
NZ_CP015195.1\|WP_168110739.1\|585779_586148_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015195.1\|WP_168110736.1\|581614_582625_-\|galactose/methyl-galactoside-ABC-transporter-permease-MglC	unknown	unknown	gnl\|CDD\|181892
NZ_CP015195.1\|WP_168110735.1\|581034_581463_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NZ_CP015195.1\|WP_168110744.1\|591561_593400_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP015195.1\|WP_168110743.1\|591185_591413_+\|acetolactate-synthase-2-small-subunit	unknown	unknown	gnl\|CDD\|236862
NZ_CP015195.1\|WP_168110747.1\|594547_594970_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP015195.1\|WP_168110741.1\|588764_589370_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP015195.1\|WP_168110738.1\|584334_585324_-\|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB	unknown	unknown	gnl\|CDD\|185293
NZ_CP015195.1\|WP_168110746.1\|593922_594546_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP015195.1\|WP_168110734.1\|579600_580851_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP015195.1\|WP_168112241.1\|579469_579589_+\|lipoprotein	unknown	unknown	gnl\|CDD\|338858
NZ_CP015195.1\|WP_168110733.1\|578205_579168_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP015195.1\|WP_168110731.1\|576442_576916_-\|transcriptional-regulator-AsnC	unknown	unknown	gnl\|CDD\|183019
NZ_CP015195.1\|WP_168110745.1\|593502_593916_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP015195.1\|WP_168110737.1\|582640_584167_-\|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA	unknown	unknown	gnl\|CDD\|182880
NZ_CP015195.1\|WP_168112242.1\|588087_588696_+\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|377342

Protein	Function_ID	Function_description	E-value
NZ_CP015195.1\|WP_168110732.1\|577086_578079_+\|aspartate--ammonia-ligase	gnl\|CDD\|225304	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism].	0
NZ_CP015195.1\|WP_168110740.1\|586404_587835_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP015195.1\|WP_168110742.1\|589530_591186_+\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_CP015195.1\|WP_168110730.1\|575447_576209_-\|uridine-phosphorylase	gnl\|CDD\|183018	PRK11178, PRK11178, uridine phosphorylase; Provisional.	0
NZ_CP015195.1\|WP_168110736.1\|581614_582625_-\|galactose/methyl-galactoside-ABC-transporter-permease-MglC	gnl\|CDD\|181892	PRK09478, mglC, galactose/methyl galactoside ABC transporter permease MglC.	0
NZ_CP015195.1\|WP_168110735.1\|581034_581463_-\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	2.22351e-47
NZ_CP015195.1\|WP_168110744.1\|591561_593400_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP015195.1\|WP_168110743.1\|591185_591413_+\|acetolactate-synthase-2-small-subunit	gnl\|CDD\|236862	PRK11152, ilvM, acetolactate synthase 2 small subunit.	9.07333e-25
NZ_CP015195.1\|WP_168110747.1\|594547_594970_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	2.63052e-54
NZ_CP015195.1\|WP_168110741.1\|588764_589370_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	9.35833e-97
NZ_CP015195.1\|WP_168110738.1\|584334_585324_-\|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB	gnl\|CDD\|185293	PRK15395, PRK15395, galactose/glucose ABC transporter substrate-binding protein MglB.	0
NZ_CP015195.1\|WP_168110746.1\|593922_594546_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	5.14289e-120
NZ_CP015195.1\|WP_168110734.1\|579600_580851_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP015195.1\|WP_168112241.1\|579469_579589_+\|lipoprotein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	4.16961e-06
NZ_CP015195.1\|WP_168110733.1\|578205_579168_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.99042e-163
NZ_CP015195.1\|WP_168110731.1\|576442_576916_-\|transcriptional-regulator-AsnC	gnl\|CDD\|183019	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional.	1.0566e-103
NZ_CP015195.1\|WP_168110745.1\|593502_593916_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.80331e-12
NZ_CP015195.1\|WP_168110737.1\|582640_584167_-\|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA	gnl\|CDD\|182880	PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional.	0
NZ_CP015195.1\|WP_168112242.1\|588087_588696_+\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	8.6549e-53

>NZ_CP015195.1|WP_168110738.1|584334_585324_-|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB
MKKTILTAAALAVGLGLSTLAQANTKIGVTIYKYDDNFMSLMRKEIQKEAEPLKDVQLLMNDSQNAQSIQNDQVDVLISKGVKALAINLVDPSAAPTVIGKAKPDNLPIVFFNKDPGEAALAKYENAYYVGTDPKESGLIQGNLIAKQWKANPALDLNKDGKIQYVLLKGEPGHPDAEARTKYVVEELNNQGIGTEQLFIDTGMWDAAMAKDKTDAWLSSSKANQIEVIISNNDGMALGALEATKAHGKKLPIFGVDALPEALQLIQKGELAGTVLNDGVNQGKAVVQLSNNLAKGKPATEGTNWKLENRVVRVPYVGVDKDNLSEFLK
>NZ_CP015195.1|WP_168110737.1|582640_584167_-|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA
MTRTIQNESQDSQVLLTMSNVSKSFPGVKALDKANLTVRSYSVHALMGENGAGKSTLLKCLFGIYAKDEGEILFLGKPVNFKTSKEALENGISMVHQELNLVKQCSVMDNLWLGRYPLKGVFVDHAKMYRETKAIFDELDINIDPREKVAKLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLSEKEVDHLFKIIEKLKNKGCGIIYISHKMDEIFKICDEITILRDGKWINTVAVPTTTMDEIVSMMVGRELTQRFPEKTNQPKETILQVEHLTAKNQPSIQDVSFELRKGEVLGIAGLVGAKRTDIVETIFGVREKASGTIKLHGKEMNNHTALEAINNGFALVTEERRSTGIYANLSIEFNSLVSNMKSYIGSLGLLSNKKMKSDTQWVIDAMNVKTPSHKTNIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELAKKDKGIIMISSEMPELLGVTDRILVMSNGRVAGIVETAKTSQEEILQLAAKYL
>NZ_CP015195.1|WP_168110736.1|581614_582625_-|galactose/methyl-galactoside-ABC-transporter-permease-MglC
MAALQQNKTLEFLKQNAIYFVLLILLGIIIAQDTSFLSLTNFSNILTQSSVRLIIALGVAGLLVTQGTDLSAGRQVGLAAVISATLLQAMDNMNRVFPDLGEIPIPVVILIVCAVGAVIGLINGFVIAYLNVTPFIATMGTMIIVYGFNSLYYDAVGGSPIAGFNENFTNFAQGFFRFGTFKLSYITIYAAVCAFLVWVMWNKTRFGKNIFAIGGNPEAAKVSGVNVARNLVAIYMIAGIFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVLGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGSIIILAVAIDSLKYAKKK
>NZ_CP015195.1|WP_168110735.1|581034_581463_-|EamA-family-transporter
MTQEWLYWALASALFAALTAIFAKVGLQGIDSDFATFIRIIVIFLALGAFLTYTGKWQPLSSLSTRNWIFLILSGLATGISWLAYFKALQMGKASQVAPIDKLSLVLVAIFAVVFLGERPSGQDWLGIGLVAAGVLVLAIKR
>NZ_CP015195.1|WP_168110734.1|579600_580851_+|diaminopimelate-decarboxylase
MDHFNYHNQQLMAEDVPVAEIIKQYGSPAYIYSRATLERHWKAFDQAFGSHPHLICFAVKSNSNIGLLNLMARLGSGFDIVSQGELERVLAAGGEASKVIFSGVAKSHQEIERALEVGIRCFNVESVAELHRINEVAGQMGKTAPISLRVNPDVDAKTHPYISTGLKENKFGISVKEARQVYNLAKGLPHVQITGMDCHIGSQLTELQPFLDAAERVIVLMEQLKEDGIELHHLDLGGGLGVPYNGETPPQPSQYVAALLDKLAAYPNLEIILEPGRAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQIIEVDRNLEREKALYDVVGPICETSDFLGKQRELAIDQGDLIAVRSAGAYGATMSSHYNSRPRAIEVMVDGATAYLIKQRERFEDLWQLERLLP
>NZ_CP015195.1|WP_168112241.1|579469_579589_+|lipoprotein
MMKKFLFIALVASLGLSACGVKGPLYFPDNPPPHEQKAQ
>NZ_CP015195.1|WP_168110733.1|578205_579168_-|ferrochelatase
MSQAKIGVLLANLGTPDEPTTPAVKRYLRQFLSDQRVIDLPKWKWQLILNTMVLPKRSPKVAEAYQSIWTEAGSPLLAISRQQQQAVANHFKLTNQNVVVELGMSYGNPSIEGAVDSLLKQGVSKIIVLPLYPQYSSTTTASVFDAFARGLSTQKGMVAFDFIHNYHNDPLYIQALANTVKLEEDELLLFSFHGIPKRYETEGDFYASHCRETARLVAEKLGLQENQWFLSFQSRFGDEEWLKPYTDETLQNFPQKGVKKVAVICPGFSADCLETLEEIAEENREYFEQAGGESYRYIPALNASDDHIRALVGLIEAKIA
>NZ_CP015195.1|WP_168110732.1|577086_578079_+|aspartate--ammonia-ligase
MKKSFILQQQEISFVKNTFTQNLIEQLGIVEVQGPILSQVGNGMQDNLSGIEKAVQVNVKQIPNATFEIVHSLAKWKRHTLARFHFAEGEGLFVHMKALRPDEDSLDPTHSVYVDQWDWEKVIPEGRRNFDYLKETVRSIYKAIRLTEIAVEARFDIPSVLPKEITFVHSEDLVKRYPDMTGKQRENAICKEYGAVFLIGIGGKLSDGKPHDGRAPDYDDWTTESEKGYKGLNGDILVWNEELGTAFELSSMGIRVDEKALRLQVELTGDQDRLKMDWHKDLLAGRLPLSIGGGIGQSRLAMFLLHKKHIGEVQSSVWPKEMLEQFDNIL
>NZ_CP015195.1|WP_168110731.1|576442_576916_-|transcriptional-regulator-AsnC
MNKHLQINQQLDPLDRQILRALIDDARTPYAEMAKNFGVSAGTIHVRVEKMRQSGIIEGTKIRLNQRKLGYDVCCFIGVILKSAKDYEQVIAKLNAFEEVVEAYYTTGNYSIFLKVMTHTIEELHSVLATKIQLIDEIQSTETLISMQNPILRDIRP
>NZ_CP015195.1|WP_168110730.1|575447_576209_-|uridine-phosphorylase
MSEVFHLGLTKAMLKGAKVAIVPGDPARSERIARQMDNPEFLVSTREFTSWLGYVNGQPIVVCSTGIGGPSVSICVEELAQLGVRSFLRIGTTGAIQPHINVGDVLVTTGAVRLDGASRHFAPLEYPAVADFTATNALYAAAQNQGITPYVGITASSDTFYPGQERYDTYSGKVWKHYQGSLKQWQELNVMNFEMESGTLFTMCSALGLKAGMVSGVIVNRTQQEIPNEETIKDTEIRAIKVVVEAAGALAAA
>NZ_CP015195.1|WP_168110739.1|585779_586148_+|hypothetical-protein
MAETDIYSWSNDEAADWFHLFWKNNDFSLVVETILNFNLDDEEFDSFRAAVHVLCCFGSAYAFPVRYIEQRKVLILKSIEILNNMVNPQSEKWNFLENWDYDERVIKDIKRQIEYLNFILSQ
>NZ_CP015195.1|WP_168110740.1|586404_587835_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTQKLHIKTWGCQMNEYDSSKMADLLNSTHGFELTDNAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLKKTNPDLVIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINRLRGDRSPIVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFEIAQLADQGVREVNLLGQNVNAYRGDTFDGGICTFAELLRLVAAIDGIDRVRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLREARPDITISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDVTEDEKKERLYRLQQRINNQAQQISRTMLGTEQRILVEGPSKKDLMELTGRTENNRVVNFEGTPDMIGKFVDVLITDVYTNSLRGKVVRTEDEMGLRVIESAQSVINRTRKEDELGVGKFVVNL
>NZ_CP015195.1|WP_168112242.1|588087_588696_+|tellurite-resistance-TerB-family-protein
MLNQVLGAVKNSTQSTGGTADTITKVGGGAAVAGILSMILGRNGGSNLAKLGSLAALGSLAYKAYQNYQQNNGQAQNLPAENFEEANVSQEAGVIILRTMIAAAACDGEIDEQEYATIAKEAQQSPELEQWLHQEIQQPISTAEIAQTVGHNPALAAQVYLAARLVCGADLSRKEIVFLAQLSTALNLDDSLVEQLEKQAGF
>NZ_CP015195.1|WP_168110741.1|588764_589370_-|Holliday-junction-branch-migration-protein-RuvA
MIGRLEGKILEKSPPEMVLDVQGVGYELLLPMTSFYSLPQVGEKTTLFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVAQFATAVEQEELAKLTKIPGIGRKTAERLLVELKGKFKGMAQSDFFVEHSADQIVASNSPDPSDEARDALIALGYKPADAEKMIKKLNKPEMTSEQLIREALRNAI
>NZ_CP015195.1|WP_168110742.1|589530_591186_+|acetolactate-synthase-2-catalytic-subunit
MNGAKLVIESLKAQGVTTLFGYPGGAIMPTYDALYDSGLDHLLCRNEQGAAIAAIGYARSTGKVGVCLATSGPGATNLVTGLADALLDSVPIVAVTGQVASHLIGTDAFQETDVLGLSLACTKHSFIVQNIDELPHIMALAFQIAQSGRPGPVLVDVPRDVQVAETDLQPLVYPKEAPEAQNPSALAEAYELVKAAQKPVLYVGGGVGMAGGVQAVRDFLKVTNMPSVSTIKGLGTIEPTDPLHMGMIGMHGTKAANFAVQECDLLIACGARFDDRVTGKLDTFAPNAQVIHIDIDAAEIHKLRRANVALKGDLIEAVNALAQPLEIDPWRERVRELKAEHDFRYQDNAGQGPIDAWALLNTLSQRKPHNAIITTDVGQHQMWSAQHLQHFAPENYITSAGLGTMGFGLPAAVGAVKARPHDPVILITGDGSLMMNIQEFGTIKRGGNLPVKIVLLDNQRLGMVRQWQDLFWNKRRSETILDDNPDFVMLAKAFDIEGEKIERADQVSAALDRLLNAKGAYLLHICIPSSESVWPLVPPGACNADMLEEDI
>NZ_CP015195.1|WP_168110743.1|591185_591413_+|acetolactate-synthase-2-small-subunit
MQNNTLVIKATKRPETLERLLRVIRHRGFEVLSLNTENKDGEITFNVTVQSIREISLLINQLEKLPDVKSLRQLM
>NZ_CP015195.1|WP_168110744.1|591561_593400_+|dihydroxy-acid-dehydratase
MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFTQFVPGHVHLKDMGQLVAAEIEKAGAVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPTIFVSGGPMEAGKTKLSDQLIRLDLVDAMIESADPNVSDERVEAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSMLATHADRKELFLQAGRQIVELCKKYYQEDDESVLPRSIANFDAFENAMSLDIAMGGSSNTVLHLLAAAQEAGVDFQMADIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMGLVGELDRAGLIHRHTRTVLGMSLEEQLNQYDIIRNQDENLHKFFRAGPAGIRTTQAFSQDCRWDTVDNDRENGCIRSKEFAISQEGGLAVLFGNIALDGCIVKTAGVDESIWKFTGTAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKCALLTDGRFSGGTSGLSIGHASPEAASGGAIGLVRDGDIIDIDIPNRAINLRVSDEELSQRRAEQDVKGWQPANRQREVSFALKVFGHFATSADKGAVRDKSLLK
>NZ_CP015195.1|WP_168110745.1|593502_593916_+|DUF805-domain-containing-protein
MNLFQALFSFQGRLNRKGFWQALGLHFALLFIVANFVYQQTFSAWLLLPLLVSGYSFLAVAAKRLHDRNRSAKALSILLVPIICYLTSLKAEGTMAWILGVSLPLFIGTMLLLEWGCFAGHPEPNQYGEKGQSLRFK
>NZ_CP015195.1|WP_168110746.1|593922_594546_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MMKLNYHKTHFLTSAANIRQLPEPVGVEIAFAGRSNAGKSTALNALTNQKSLARTSKTPGRTQLINLFEVEPNCKLVDLPGYGYAAVPEQMKLQWQKSLAEYLQDRECLRGVVILMDIRHPLKDLDQQMIEWAVSSELPVMLLLTKADKLSQSERAKQVKMVREAILPFQGDIQVEAYSALNKIGIDKLAAKLDSWFAEVFDTQEGE
>NZ_CP015195.1|WP_168110747.1|594547_594970_+|ribonuclease-E-inhibitor-RraB
MNELRQETDQIIADLLKDGSDPDALYIIEHHVAHRDFDKLEKLVVDAYKLGYEISEAEEFEDENGKTFFCCDIVSEIKLDAELISAQQKELLPLIEKAGGEYEGWGTYFEDPNAEDDEYGEDGEFFDEDEDDFDEDDEHR

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Crispr_ID: NZ_CP015195_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015195_3

1536094-1536199

Orphan

Consensus_repeat	Method
GCGAGGACGCTGGCGCCATCAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015195_3

>merge|NZ_CP015195|3|1536094-1536199|CRISPRCasFinder
GCGAGGACGCTGGCGCCATCAAGGATCCTGATAAAGTTGATAAGCTTTATGGCTCACCAAGTTAATGTTTTGAACAGTTGTGGCGAGGACGCTGGCGCCATCAAGG

>NZ_CP015195|3|3|1536094-1536199|CRISPRCasFinder
GCGAGGACGCTGGCGCCATCAAGG	ATCCTGATAAAGTTGATAAGCTTTATGGCTCACCAAGTTAATGTTTTGAACAGTTGTG
GCGAGGACGCTGGCGCCATCAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015195.1\|WP_168111532.1\|1530819_1531518_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|182460
NZ_CP015195.1\|WP_168111529.1\|1527727_1528519_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP015195.1\|WP_168111537.1\|1536307_1539403_-\|transporter	unknown	unknown	gnl\|CDD\|169983
NZ_CP015195.1\|WP_168111527.1\|1524818_1525400_+\|DUF1439-domain-containing-protein	unknown	unknown	gnl\|CDD\|377799
NZ_CP015195.1\|WP_168111533.1\|1531498_1532047_-\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|234691
NZ_CP015195.1\|WP_168111528.1\|1526286_1527603_+\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP015195.1\|WP_168111535.1\|1532476_1533370_+\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|181614
NZ_CP015195.1\|WP_168111540.1\|1541514_1543389_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NZ_CP015195.1\|WP_168111539.1\|1540702_1541284_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP015195.1\|WP_168111543.1\|1546910_1547180_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP015195.1\|WP_168111531.1\|1529388_1530774_+\|envelope-stress-sensor-histidine-kinase-CpxA	unknown	unknown	gnl\|CDD\|236532
NZ_CP015195.1\|WP_168111534.1\|1532116_1532467_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|183219
NZ_CP015195.1\|WP_168111541.1\|1543742_1544147_-\|DUF4411-family-protein	unknown	unknown	gnl\|CDD\|373028
NZ_CP015195.1\|WP_168111545.1\|1548022_1548469_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|226285
NZ_CP015195.1\|WP_168111538.1\|1539415_1540639_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP015195.1\|WP_168111544.1\|1547250_1547847_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NZ_CP015195.1\|WP_168111542.1\|1545490_1546804_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP015195.1\|WP_168111530.1\|1528616_1529339_+\|response-regulator	unknown	unknown	gnl\|CDD\|182864
NZ_CP015195.1\|WP_168112281.1\|1544131_1545241_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
NZ_CP015195.1\|WP_168111536.1\|1533480_1535631_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|227850

Protein	Function_ID	Function_description	E-value
NZ_CP015195.1\|WP_168111532.1\|1530819_1531518_+\|carbonate-dehydratase	gnl\|CDD\|182460	PRK10437, PRK10437, carbonic anhydrase; Provisional.	6.97998e-118
NZ_CP015195.1\|WP_168111529.1\|1527727_1528519_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.83665e-128
NZ_CP015195.1\|WP_168111537.1\|1536307_1539403_-\|transporter	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP015195.1\|WP_168111527.1\|1524818_1525400_+\|DUF1439-domain-containing-protein	gnl\|CDD\|377799	pfam07273, DUF1439, Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.	2.66094e-54
NZ_CP015195.1\|WP_168111533.1\|1531498_1532047_-\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	1.91047e-45
NZ_CP015195.1\|WP_168111528.1\|1526286_1527603_+\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP015195.1\|WP_168111535.1\|1532476_1533370_+\|cytidine-deaminase	gnl\|CDD\|181614	PRK09027, PRK09027, cytidine deaminase; Provisional.	2.13622e-161
NZ_CP015195.1\|WP_168111540.1\|1541514_1543389_-\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	2.36696e-111
NZ_CP015195.1\|WP_168111539.1\|1540702_1541284_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.19343e-14
NZ_CP015195.1\|WP_168111543.1\|1546910_1547180_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.52365e-49
NZ_CP015195.1\|WP_168111531.1\|1529388_1530774_+\|envelope-stress-sensor-histidine-kinase-CpxA	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	0
NZ_CP015195.1\|WP_168111534.1\|1532116_1532467_+\|dihydroneopterin-aldolase	gnl\|CDD\|183219	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase.	1.28758e-47
NZ_CP015195.1\|WP_168111541.1\|1543742_1544147_-\|DUF4411-family-protein	gnl\|CDD\|373028	pfam14367, DUF4411, Domain of unknown function (DUF4411). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 153 and 170 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.48839e-30
NZ_CP015195.1\|WP_168111545.1\|1548022_1548469_+\|TPM-domain-containing-protein	gnl\|CDD\|226285	COG3762, COG3762, Predicted membrane protein [Function unknown].	3.05902e-27
NZ_CP015195.1\|WP_168111538.1\|1539415_1540639_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	6.54494e-69
NZ_CP015195.1\|WP_168111544.1\|1547250_1547847_+\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	4.06039e-68
NZ_CP015195.1\|WP_168111542.1\|1545490_1546804_+\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	2.48729e-72
NZ_CP015195.1\|WP_168111530.1\|1528616_1529339_+\|response-regulator	gnl\|CDD\|182864	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR.	9.7359e-103
NZ_CP015195.1\|WP_168112281.1\|1544131_1545241_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	6.03972e-18
NZ_CP015195.1\|WP_168111536.1\|1533480_1535631_-\|autotransporter-domain-containing-protein	gnl\|CDD\|227850	COG5563, COG5563, Predicted integral membrane proteins containing uncharacterized repeats [Function unknown].	4.1295e-30

>NZ_CP015195.1|WP_168111536.1|1533480_1535631_-|autotransporter-domain-containing-protein
MKVSDDGSVVINPSSNDWFGLWSGPNWATKTDLGTLRSDNSGFSYANSISANGRVVAGRAPNDNDEERAVLWSGPNWATKTDLGTLRSDNSGRSVAVYISADGRVVAGIAPNDNNEERAVLWSGPNWATKTDLGTLKSDNSGWSDLRSISADGRVVAGRAINDNNEIRLVVWSGPNWATKTDLGRSMFIIDLISADGGVIIGYNPSIHRSKDVLWSGPNWVTKTELGTLKSDNSDYSSASAISADGRVVAGQATNDNNEDRAVLWSGPNWATKTDLGTLRSDNLGSSAATDLSDDQSVVVGYAHNENNEYRAVLWSGPNWATKTDLGTLKSDNSGQSFARKINADGTIVAGGSETDDRSGGYTGMVMALWKLAYTSTPDTAPEAEALPEYVVPDEPAPAPEPSPAPVEPAPAPQGPVVVAMVDVAKTQQTLHQLGADTFNLVSLQANALRRLQQGCIADNGFCYAVLNDFSQTTHSQDFMSGLRLGYGHNGLTLGLGFDRSHYRQLPDTYQAKRNNLGLSLFAHWEKDGWYLAPSVAWDKYQASIKRQALKNTEAGQNVSTIKGLGASLTFGKDIALASGNQIGWYGALRYSQVRRDGYTETGAEFPATYANLKFQDTALAVGLKSSVQLNPSLQWLASVEVEKSISNSAPTYKVNAPYIGNFQHEASVNSLRPKIQTGLRYNFAPSFNVDLMPYIQRAMFGSTQRGVSLNFTGKF
>NZ_CP015195.1|WP_168111535.1|1532476_1533370_+|cytidine-deaminase
MPDLTHIQARLAALETQNQAITQALLEQLIKQDYQAQFSADFVTQTCQQFELSAVDLALHCLPLAACYALVPVSNFYVGAVAIGQSGNFYFGANQEFAGEAMQQTVHAEQSAVGHAWLAGEKGLNHIVVNYTPCGHCRQFLNELNSASSLQIHLPHSQNNQLHSYLPDAFGPKDLNVAKVLFDPQEHHLNLTNSDPLVQAALQAANQAYAPYSQALSGLALEVGNQIITGRYAENAAFNPSFLPLQAALNYRRLQGLSDLPIKRAVMVEKQAVLSHAKMARSLLKEFGVELEYYAVE
>NZ_CP015195.1|WP_168111534.1|1532116_1532467_+|dihydroneopterin-aldolase
MHDKVFIKELTVFASIGAYEWEKTIKQRLVFDLEMAWDFRKAAETDDVQYCLNYAEVSQAVIELTQSQHFALVETLAHRVADMIQAKFQVPALRLTLHKPKAVAEAASVGVIVERH
>NZ_CP015195.1|WP_168111533.1|1531498_1532047_-|glycerol-3-phosphate-acyltransferase
MSGLSHFLIISAYFLGTIPSLRLFNWLSGGEALAKNQQKLTACGVTVLDFLKGILPVAVGLALNLSPSALGGVAFAVCLGHIFPVFNRFEGGKGTVTALGVILPMSFGIAGLALATWLVSFLVLGYRTASAVLTALVLPAYVWWLRPELTFPIALVCCLIVYRYHDNIQDMWRGLEPKVRWW
>NZ_CP015195.1|WP_168111532.1|1530819_1531518_+|carbonate-dehydratase
MKSIETLFANNHAWATEMKDQQSDYFKVLAAHQKPTYLWIGCADSRVPAEKLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLDIEHIIICGHTNCGGIKAAMTNEDYGLINNWLLHIKDLWFKHSHLLGKLPPEDRADMLVRLNVAEQVYNLGRSSIIDAAWKRGKKLSIHGWVYDVNDGFLNDQGVIATSRETLEITYRNVIASLTTEAEHMVEQHQEAITTTEP
>NZ_CP015195.1|WP_168111531.1|1529388_1530774_+|envelope-stress-sensor-histidine-kinase-CpxA
MHLFNRIKKIRNYLAYQIFASFWFTFAILLGIAFILPHYDARIFSNLESGELAFYQRESQSTEVEYNLDEVFERGLAVKTPNGFDVILLEKNTGMFRGVPEHHLKAFQTFIFRADNPAKPLQRRFGNVEYHGPFVLQSPQREYYQYFLKRVDPQTELINKLFDSPWLMLLLLLLISTPVLLWLAWKIAKPVKALRISANAVATGNLAIDPRLETEGINELRKVGRSFNQMVSSLQNLRNYQQRLLSDISHELKTPLTRMQLAVSLIRRRNGESNELTRIENEIDKLNTMILDLLTLSRQQLGHHLTREVFTVNKIWEDVLENAKFETEQNGISLYVSQRIPFTDHHKLNGNQVLLASALENVIRNAQKYAKSMIKVTMYIDKAELIILVDDDGMGIPDGEYDQIFRPFYRVEQDRARQTGGTGLGLAIVANAIQQHKGLVQAAKSPIGGLRVEIRLPLWVE
>NZ_CP015195.1|WP_168111530.1|1528616_1529339_+|response-regulator
MPKILLVDDDVELTELLAELLSLEGFDIRVVHNGQDALNDLELAQYELILLDVMMPVLNGIETLKHIRQKYDTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTASTKSPLLDGLDSSSGDKDNKQLQFGGVELHSGRQQATYQGKDLELTGTEFALLQMLIRNPGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERDDNLPWFKTLRGRGYLLVTEK
>NZ_CP015195.1|WP_168111529.1|1527727_1528519_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTMTDFIQLVAQLRHPEKGCPWDLKQDFDSMLPHLLEETYEVAEAIHTKDRAALREELGDLLLQVVFLSRLSEEEGTFSFQDVLNDVFDKLIRRHPHVFGDQTAGNSEEALSRWEEMKAVEKAQKSANEASSILDDLPFALPALTRAHKLQKRCAKVGFDWASLPPVLAKVEEELEEVKQELEKQPQDREKLGEELGDLLFATVNLCRHCQFEAESNLRHANVKFENRFRKVEKMVEKDEKNLSSCSLDELDNYWNQIKLLK
>NZ_CP015195.1|WP_168111528.1|1526286_1527603_+|Xaa-Pro-aminopeptidase
MDLSYLAQLPQEEFRTRRQKLLEQMQDNSALLVFTESEKRRNNDCHYVFRPDSYFWYLTGFAEPQAALLLIKKAGQTQSILFLREKDKERETWDGRRLGTAAAPQALNLDAAYPIEEIEGKLAEKLANLTACYHARGLQTWGDELLFKSLDKIAAQRQKAPTQLIDWQPILSEMRLFKSQAEIALIQKACEISALAHIRAMKQTRPNRYEMEIEGEIQHEFTRFGARFPSYNSIVAGGDNACILHYTENDQVLKDGDLLLIDAGAEFAMYAGDITRTFPINGKFSPAQREIYELVLTMLKEATKLLVPNSSIKAANDKAVEIMVEGLVRLGVMKGEVKTLIEEKAYKAYYMHGLGHWLGLDVHDVGDYGTERDRSLEIGMVLTVEPGIYIPQDADVPEAYKGIGVRIEDNLLITDYGNKNLTSGCPKEIEDIEALMAG
>NZ_CP015195.1|WP_168111527.1|1524818_1525400_+|DUF1439-domain-containing-protein
MRIFVKISAKLTACGLLFAANLAPANPLAITEKEINHYLEHNLAEKVPLENKVGFGKLFQLHYKLDELSTQIGRTDEKRVAVTGLLDGKLSLQGRNYDAKIQLNLDTIPYYSPEKGALYLQDVRLKNWHITPDKYQNQLQMLMPMLMESVSSLLNHYPVYTLDESDTKQALIKKFGKGIVVEKGQIRLEASLF
>NZ_CP015195.1|WP_168111537.1|1536307_1539403_-|transporter
MKFTDIFIKRPVLAICISLLITILGLQSISKLQVREYPEMTISIVTVSVNYAGADASLMQALVTSQIEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTNPQEALSDISAKVNAIRSNLPSGIDDPSISVSSGSNDAFMYIRFTSDELSAPQVTDYLNRVVKPQFFTVNGVSSVNIFGGATFGLRIWLDPDKMAGYNLSGASVLSALSANNLSTAAGSANGYYTVYKNKVESTTPSVSELENVTVATTSEGLQIKLKDIASVELDKSSDAARATANSKDAVVIAVEAAATANKLTVAKNVYPLFEQILDNLPTAIQGEILYDSTIAINSSITEVIKTIGEATVIVLVVIILFLGSLRAMIIPVITIPISLIGVLFLLQMLGFSINLLTLLGLILAIGLVVDDAIVVLENVERHVKEGKSPFDAAIIGTREIALPVISMTITLAAVYSPMALMEGVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKPHDHENESRFVKCINGMLDKMTSCYTNMLRGVMAVRWFMLIFAIAIFASLPFLFTSLSSEVAPSEDRGVVVAFSNGPSNTNLDYSQEALEPFNKKVLELPEVHGMMSIAGFSGSNSALSIISLKDWSERSKSQAEVKNVVAGLAKDVVAMDVNAVAFPEIQTGESGLPFSVVITTAESYSKLAEVAADFLKKAQTSGQFFFANLDLKFDTVTMKMKFDREKMGTYGVTMQQVSGTLGSFLSGAIITRVDIDSRAYPIVSQAVRQDRLNPQDLMNYYVTTASGASIPLGSFVTMETVTEPASLSRMNQLNSATIGGVVSGSIGDAVKWAQAELDRSLPQGYQYDFKSEARQYIQEGNSMMMTFALAVVMIYIVLAIQFESWRDPLVILVSVPLAISGALLVMNVLGVAGVAGSTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRFEAIVYAATIRLRPIMMTTAAMIAGLIPLLFASGAGAIARFSIGMVIVAGLAIGTLFTLFVLPVIYTFLGSEHKPLPEFDEEKYALPKA
>NZ_CP015195.1|WP_168111538.1|1539415_1540639_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MTTETVTPQSQKKTGLGRKFLIILTLIIVLVAFGAVVFLQQFIAGKKAEAAANMPESVSQITAMEVATRDWTPMISAVGYIRPNQGAMLSAQAAGTVKRVLVQSGQRVNKGDLLLELDSSVEEATLKASQAQLSAAKANFDRYRNLIASNSASKAEFDNAQATYNQLLANIESLKATIGRRQIYAPFSGVAGIVNVNVGQYITMGTEIVRVEDQSAMKVRFTLPQTDLENLAVGQKVTAEIDALPAQTFPARITAIDPAVDRSTGLINLEATITEGQEKLLSGMFARLNVSLPSQHNQVIVPQIAVTYTMYGETVYQLQALSEEDKNLINKMAEQNPSLDVNKIYRAKQVEVKTLDRRGVYAQLGKGLKAGDLIATGGLQRLSNNALVQVTDVEPVGVTQPAKSTKL
>NZ_CP015195.1|WP_168111539.1|1540702_1541284_-|TetR/AcrR-family-transcriptional-regulator
MFKFDVSQSEMAQRILMAAEVLMAREGVQNLSTHKIAKEAKLSVGTIYVHFKDKDDLLTQLVLFLFQRFYQDSMRHAAPGLPLFEQYRKMWLGKWHYLQNNPTIVMNMHQYEALPKFHDVVKFCTSAEDMPWNQFLDRGRQTGEIANLPNNMIYALSFGVIRDLAYIQIIEGIRYSEAMIEEMVERTWLAIRR
>NZ_CP015195.1|WP_168111540.1|1541514_1543389_-|peptidylprolyl-isomerase
MIEKMHEKTNSFAFKLIFTAVSLSFVLGGVSVGGSLLYGDDNAVAKVNGESIDQQTFSAARSREQNILLSQMGEDFWKIVDNPETAKQFNQGVLNKLIDERLLRQYMTDLKLGVTADQIKSAIVHDASFQKDGRFSNELYQMVLRQNNISADRFASIVAEGILSSQLEEGLASTHFMTPVQQEALAKFSLQSREYRAAILPLAEAAQKQSVTDAEVQAYFEANQAKFAEPEKLSVEYFSFTPADVAKNIKVSDEQIKNYYEINKARFVTQGEARLAHIQLANAEAAKEVEAALQAGQDFAELAKIKSADPLSANQGGDLGWAKPGVFPSAFEQAANNLQAGQFSQPVQVDGAFHIIKVLERKPTTALSLDEVKAQIKDRLTQEETAAKYSEIIGEISNKANQLSLAELAQLAGVEVQKNEQFTPDNLPQALDNEKITNVLFAKDFRTTGELSEAIDLSTAAEARSMFLKVSQFEASRPQTFEEAKAQAESALKQDKAEKALTAQAQDMVEKLTKGESVSISFSPKATSRYADSALSPVLAQDLFAMPKPLNGPSYKASRAANGDVVVLALDSVTDGSLADFQQVAQAVEWAERADLTRVVVQDLRERASIDINEELLDQQSTSH
>NZ_CP015195.1|WP_168111541.1|1543742_1544147_-|DUF4411-family-protein
MERFLIDANIFITAKNLYYQFSFCQAFWDFLSTMHQKGIIFSIQAVKQEMLRQNDDLANWVNAQADTFFEDQYQSAVSYATLMNYAQGLNVQQIAKDDFAKQENADAWLLAHALEHNFTIITHETLILLRKNVL
>NZ_CP015195.1|WP_168112281.1|1544131_1545241_-|ImmA/IrrE-family-metallo-endopeptidase
MIGWIAERENTEPQGLAELLAPKKVEQFLAGVVNKSIAEKLARLANIPFGYLFLSQPPVINNPQIPDLRQTVGAEPLSKDFIDVLKDIERKVDWYKEFLLENGDDTPREFVNKFPYSTTPNYIDVAQDIAKTIDFFIERDLPNTSRENYYRKLSARFEKIGILIFKNGVVGNNNKRKLNVEEFRGFALIDNLVPAIFINNADHPSAQLFTLLHEVAHIWIGQNGVSSWNQDRAVEAFCNKVAAEFLMPEALFLAKWAESDENHAEYVANYFKVSQLATVVKAVQLNLLPQEAIEQARKQLKAAPQETNTGGHFYNMFPVKNSHRFTDAVVNQAMSLNLPLREAGKLLNVHADTVVGYYRHKRKELWNAS
>NZ_CP015195.1|WP_168111542.1|1545490_1546804_+|sodium:proton-antiporter
MSIYAYLCFLAALAILLGFFTSKINDKVQSTIAITAAAMIGSMLLMILGWLGWFNIDTVAKDVMEQIDFKSFLLNGILGFLLFAGSLGIKLPILKDQKWEISIFALFSTFCSTLLIGLLIYGFAHLIGLPIDLIYCIVFGALISPTDPIAVLAIIKNLRAPRRLSMQVEGESLFNDGVGLVIFVTVFAVAFGGQEATFGGVISLFLHEAIGGILLGFVFGFIAHILISNTDDGSMEILLTLTIPTAGFMLANNYLHVSGALAMVVSGIMIGNWTRHSGFSEQSQRYLDHFWEMIDHFLNSLLFFLIGFAILLIDFNIYGIILMIIAVPVCLAGRYISLWMPYKLLQQFRTYNPYTLKIMTWGGLRGGLALAMALSIPAKTAYIGDTGMDVRDLILIMTYSVVMFSILVQGTTIEKSIQKAKTVDPNKEEYLTPSNKH
>NZ_CP015195.1|WP_168111543.1|1546910_1547180_+|30S-ribosomal-protein-S15
MSLSTEKKAAIVADFGRDAKDTGSSEVQIALLTAQINHLQAHFAVHKKDHHGRRGLLRMVSRRRKLLDYLKRTNLALYSETIARLGLRR
>NZ_CP015195.1|WP_168111544.1|1547250_1547847_+|LemA-family-protein
MKKWCVILLVAILGIGGLGYVVLKDSYNDLVKAEEDINSVWANVESAYQRRADLIPNLVNTVKGQANFEQETLTSVIEARAKATAVTIDPSTATEEQMAKFQEAQQGVNSALSRLLVSVEKYPELKAHEGFLNLQAQIEGTENRINVERNNFNNAVKGYNTQVRQMPTKFVAMIFGFQTKPQFKAEAGSEKAPVVNFN
>NZ_CP015195.1|WP_168111545.1|1548022_1548469_+|TPM-domain-containing-protein
MGLLSFLQKKLPIDTTQIEQAIAKLEQASSAELRVVVERKSKTDQAMERATEVFNALKMYETADRNAVLIYLSFKPHHLAIIGDKGIHQKVAPDFWQKIYDAMKQDCQAACFTQAICRGIEAVQVELAHHFPRKENDQNELPNEVIIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015195_1	1.1\|384128\|30\|NZ_CP015195\|CRT	384128-384157	30	GU903191	Escherichia phage vB_EcoM_ECO1230-10, complete genome	20149-20178	6	0.8
NZ_CP015195_1	1.1\|384128\|30\|NZ_CP015195\|CRT	384128-384157	30	NC_025430	Escherichia phage vB_EcoM-ep3, complete genome	21783-21812	6	0.8
NZ_CP015195_1	1.6\|384459\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384459-384488	30	NZ_CP014599	Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence	138234-138263	6	0.8
NZ_CP015195_1	1.13\|384921\|31\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384921-384951	31	MN694103	Marine virus AFVG_250M29, complete genome	16019-16049	6	0.806
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP010187	Escherichia coli strain M6 plasmid A, complete genome	3867-3896	6	0.8
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP010207	Escherichia coli strain M11 plasmid A, complete sequence	97842-97871	6	0.8
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP010197	Escherichia coli strain M9 plasmid A, complete genome	3867-3896	6	0.8
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP010222	Escherichia coli strain M19 plasmid A, complete sequence	3867-3896	6	0.8
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP010214	Escherichia coli strain M15 plasmid A, complete sequence	130767-130796	6	0.8
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP049359	Deinococcus wulumuqiensis R12 plasmid unnamed2, complete sequence	205824-205853	6	0.8
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP031163	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence	537179-537208	6	0.8
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP031163	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence	629389-629418	6	0.8
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NZ_CP031163	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence	664101-664130	6	0.8
NZ_CP015195_1	1.18\|385252\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385252-385281	30	MT360682	Vibrio virus 2019VC1, complete genome	6262-6291	6	0.8
NZ_CP015195_1	1.23\|385582\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385582-385611	30	NZ_CP021116	Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence	146746-146775	6	0.8
NZ_CP015195_1	1.5\|384393\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384393-384422	30	NZ_MK715471	Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence	36594-36623	7	0.767
NZ_CP015195_1	1.5\|384393\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384393-384422	30	MN651570	Acinetobacter phage vB_AbaP_APK89, complete genome	36796-36825	7	0.767
NZ_CP015195_1	1.9\|384657\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384657-384686	30	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	207092-207121	7	0.767
NZ_CP015195_1	1.17\|385186\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385186-385215	30	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	70405-70434	7	0.767
NZ_CP015195_1	1.19\|385318\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385318-385347	30	NZ_CP032530	Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence	90597-90626	7	0.767
NZ_CP015195_1	1.21\|385450\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385450-385479	30	MT773556	Myoviridae sp. isolate BML_4 genomic sequence	92449-92478	7	0.767
NZ_CP015195_1	1.23\|385582\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385582-385611	30	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	241944-241973	7	0.767
NZ_CP015195_2	2.1\|585679\|32\|NZ_CP015195\|CRISPRCasFinder	585679-585710	32	NZ_LR536451	Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2	224967-224998	7	0.781
NZ_CP015195_2	2.1\|585679\|32\|NZ_CP015195\|CRISPRCasFinder	585679-585710	32	KU958700	Streptomyces phage Chymera, complete genome	23952-23983	7	0.781
NZ_CP015195_2	2.1\|585679\|32\|NZ_CP015195\|CRISPRCasFinder	585679-585710	32	JN698994	Mycobacterium phage DS6A, complete genome	17667-17698	7	0.781
NZ_CP015195_1	1.3\|384261\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384261-384290	30	MN693576	Marine virus AFVG_25M375, complete genome	13929-13958	8	0.733
NZ_CP015195_1	1.5\|384393\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384393-384422	30	MH517022	Acinetobacter phage SH-Ab 15599, complete genome	27437-27466	8	0.733
NZ_CP015195_1	1.9\|384657\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384657-384686	30	MK288021	Bacillus phage pW2, complete genome	81007-81036	8	0.733
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024325	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-6	10765-10794	8	0.733
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024358	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-4, complete sequence	28282-28311	8	0.733
NZ_CP015195_1	1.13\|384921\|31\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384921-384951	31	KY612839	Vibrio phage pVco-5, complete genome	53664-53694	8	0.742
NZ_CP015195_1	1.10\|384723\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384723-384752	30	NC_014725	Edwardsiella tarda strain CK41 plasmid pCK41, complete sequence	57926-57955	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024318	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1	39741-39770	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024321	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-2	4554-4583	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence	30298-30327	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024395	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-1, complete sequence	4610-4639	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	39812-39841	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024209	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2	12656-12685	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024211	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-4	27846-27875	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024217	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-9	7933-7962	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024335	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1	39748-39777	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	39752-39781	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	30334-30363	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024378	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence	21770-21799	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024381	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-6	5149-5178	9	0.7
NZ_CP015195_1	1.12\|384855\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	384855-384884	30	NZ_CP024382	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-7	18959-18988	9	0.7
NZ_CP015195_1	1.21\|385450\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385450-385479	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1711863-1711892	9	0.7
NZ_CP015195_1	1.22\|385516\|30\|NZ_CP015195\|CRT,CRISPRCasFinder,PILER-CR	385516-385545	30	MN694777	Marine virus AFVG_250M80, complete genome	13619-13648	9	0.7
NZ_CP015195_1	1.10\|384723\|30\|NZ_CP015195\|CRT,CRISPRCasFinder	384723-384752	30	NZ_CP024658	Bacillus cereus strain MLY1 plasmid pMLY1.3, complete sequence	13536-13565	10	0.667
NZ_CP015195_2	2.1\|585679\|32\|NZ_CP015195\|CRISPRCasFinder	585679-585710	32	MT701590	Klebsiella phage Miami, complete genome	144510-144541	10	0.688

1. spacer 1.1|384128|30|NZ_CP015195|CRT matches to GU903191 (Escherichia phage vB_EcoM_ECO1230-10, complete genome) position: , mismatch: 6, identity: 0.8

gagcaggcggcgggtaatgtggttgtcggt	CRISPR spacer
cagcaggcggcgggtaatgtcggtgtaagc	Protospacer
 ******************* * *** .*.

2. spacer 1.1|384128|30|NZ_CP015195|CRT matches to NC_025430 (Escherichia phage vB_EcoM-ep3, complete genome) position: , mismatch: 6, identity: 0.8

gagcaggcggcgggtaatgtggttgtcggt	CRISPR spacer
cagcaggcggcgggtaatgtcggtgtaagc	Protospacer
 ******************* * *** .*.

3. spacer 1.6|384459|30|NZ_CP015195|CRT,CRISPRCasFinder matches to NZ_CP014599 (Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

aacaccccgcaatgcgaggtgatgatgtac	CRISPR spacer
ttctcgccgcagggcgaggtgatgatgtac	Protospacer
  * * *****. *****************

4. spacer 1.13|384921|31|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to MN694103 (Marine virus AFVG_250M29, complete genome) position: , mismatch: 6, identity: 0.806

caaatgataaagcttatggtgaaacatttat	CRISPR spacer
aacttaataaagcgtatggtgaaacattaat	Protospacer
 *  *.******* ************** **

5. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010187 (Escherichia coli strain M6 plasmid A, complete genome) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
ttatcaatcctgcggtcatcaagactgaga	Protospacer
**..*********************.. *

6. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010207 (Escherichia coli strain M11 plasmid A, complete sequence) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
ttatcaatcctgcggtcatcaagactgaga	Protospacer
**..*********************.. *

7. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010197 (Escherichia coli strain M9 plasmid A, complete genome) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
ttatcaatcctgcggtcatcaagactgaga	Protospacer
**..*********************.. *

8. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010222 (Escherichia coli strain M19 plasmid A, complete sequence) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
ttatcaatcctgcggtcatcaagactgaga	Protospacer
**..*********************.. *

9. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010214 (Escherichia coli strain M15 plasmid A, complete sequence) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
ttatcaatcctgcggtcatcaagactgaga	Protospacer
**..*********************.. *

10. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP049359 (Deinococcus wulumuqiensis R12 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
atgcgtgtcctgcgggcatgaagaccatgc	Protospacer
 ***  .******** *** **********

11. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
gtgcgtttcctgcggacatgaagaccatgc	Protospacer
 ***   ******** *** **********

12. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
gtgcgtgtcctgcgggcatgaagaccatgc	Protospacer
 ***  .******** *** **********

13. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 6, identity: 0.8

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
gtgcgtgtcctgcgggcatgaagaccatgc	Protospacer
 ***  .******** *** **********

14. spacer 1.18|385252|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to MT360682 (Vibrio virus 2019VC1, complete genome) position: , mismatch: 6, identity: 0.8

gccccgctaacattcagggaatgttaaata	CRISPR spacer
gcgaggtttacattcagagaatgttaaata	Protospacer
**   *.* ********.************

15. spacer 1.23|385582|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021116 (Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ggttgcggctgttggtagggtgtccataaa--	CRISPR spacer
ggttgaggctgttggtagg--gtcgatggatt	Protospacer
***** *************  *** **..*

16. spacer 1.5|384393|30|NZ_CP015195|CRT,CRISPRCasFinder matches to NZ_MK715471 (Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence) position: , mismatch: 7, identity: 0.767

ttcgaaattaacgataaagttatcaaattg	CRISPR spacer
atctcaattaactaaaaagttatcaaatgc	Protospacer
 **  ******* * *************

17. spacer 1.5|384393|30|NZ_CP015195|CRT,CRISPRCasFinder matches to MN651570 (Acinetobacter phage vB_AbaP_APK89, complete genome) position: , mismatch: 7, identity: 0.767

ttcgaaattaacgataaagttatcaaattg	CRISPR spacer
ataaatattaacaataaagttgtcaaattc	Protospacer
 * .* ******.********.*******

18. spacer 1.9|384657|30|NZ_CP015195|CRT,CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

caagaattacctattagaacggaactcaga	CRISPR spacer
aacgccatacctaatagaacggaactaaga	Protospacer
 * *   ****** ************ ***

19. spacer 1.17|385186|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 7, identity: 0.767

ttgccaatcctgcggtcatcaagaccatgc	CRISPR spacer
ttatcaatcctggggtcatcaagactgaga	Protospacer
**..******** ************.. *

20. spacer 1.19|385318|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032530 (Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence) position: , mismatch: 7, identity: 0.767

cgtaaggtatatgtttaagcttctt--atcgg	CRISPR spacer
aataaggaatatgtttaagcttctctaatt--	Protospacer
 .***** ****************.  **.

21. spacer 1.21|385450|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 7, identity: 0.767

ttgacggccctggtatggcgtatgtagttg	CRISPR spacer
acgttggccctggtaaggcgtatgtaaatg	Protospacer
 .* .********** **********. **

22. spacer 1.23|385582|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.767

ggttgcggctgttggtagggtgtc-cataaa	CRISPR spacer
tcgtgcggcggttggtagggtgtctcatcg-	Protospacer
   ****** ************** *** .

23. spacer 2.1|585679|32|NZ_CP015195|CRISPRCasFinder matches to NZ_LR536451 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2) position: , mismatch: 7, identity: 0.781

ggaggctggcgacatcgggggcgg-gatagttg	CRISPR spacer
ggaggctggcgagatcggcggcggcgacggcc-	Protospacer
************ ***** ***** **..*..

24. spacer 2.1|585679|32|NZ_CP015195|CRISPRCasFinder matches to KU958700 (Streptomyces phage Chymera, complete genome) position: , mismatch: 7, identity: 0.781

ggaggctggcgacatcgggggcg--ggatagttg	CRISPR spacer
ggaggctggcgacgacgggggcgacgcgcagt--	Protospacer
*************. ********  * ..***

25. spacer 2.1|585679|32|NZ_CP015195|CRISPRCasFinder matches to JN698994 (Mycobacterium phage DS6A, complete genome) position: , mismatch: 7, identity: 0.781

ggaggctggcgacatcgggggcgggatagttg-	CRISPR spacer
ggaggccggcgacatctggggcgtg-tgttcgt	Protospacer
******.********* ****** * *. *.*

26. spacer 1.3|384261|30|NZ_CP015195|CRT,CRISPRCasFinder matches to MN693576 (Marine virus AFVG_25M375, complete genome) position: , mismatch: 8, identity: 0.733

tcgccatcacgttttgcgattaagttaaat	CRISPR spacer
ccgccatcaccttttgcaattaagcttgga	Protospacer
.********* ******.******.* ..

27. spacer 1.5|384393|30|NZ_CP015195|CRT,CRISPRCasFinder matches to MH517022 (Acinetobacter phage SH-Ab 15599, complete genome) position: , mismatch: 8, identity: 0.733

ttcgaaattaacgataaagttatcaaattg	CRISPR spacer
cttaatattaacgatcaagttatcaaaaca	Protospacer
.*..* ********* *********** ..

28. spacer 1.9|384657|30|NZ_CP015195|CRT,CRISPRCasFinder matches to MK288021 (Bacillus phage pW2, complete genome) position: , mismatch: 8, identity: 0.733

caagaattacctattagaacggaactcaga	CRISPR spacer
caacaattacctattagaacagacagtgaa	Protospacer
*** ****************.**   ...*

29. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024325 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-6) position: , mismatch: 8, identity: 0.733

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaatattcttc	Protospacer
.************* ******** * . ..

30. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024358 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-4, complete sequence) position: , mismatch: 8, identity: 0.733

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaatattcttc	Protospacer
.************* ******** * . ..

31. spacer 1.13|384921|31|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to KY612839 (Vibrio phage pVco-5, complete genome) position: , mismatch: 8, identity: 0.742

caaatgataaagcttatggtgaaacatttat	CRISPR spacer
agaatgctaaagcttctggtgaaactagttt	Protospacer
 .**** ******** *********   * *

32. spacer 1.10|384723|30|NZ_CP015195|CRT,CRISPRCasFinder matches to NC_014725 (Edwardsiella tarda strain CK41 plasmid pCK41, complete sequence) position: , mismatch: 9, identity: 0.7

atagaatgggttgtatttttagctctaaaa	CRISPR spacer
tagaaatgggttgtttttttagctctttgc	Protospacer
  ..********** ***********  .

33. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024318 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

34. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024321 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-2) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

35. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024392 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

36. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024395 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-1, complete sequence) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

37. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024207 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

38. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024209 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

39. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024211 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-4) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

40. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024217 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-9) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

41. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024335 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

42. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024353 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

43. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024373 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

44. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024378 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

45. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024381 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-6) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

46. spacer 1.12|384855|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024382 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-7) position: , mismatch: 9, identity: 0.7

ctaaaccttaaactaatttaaatttgtact	CRISPR spacer
ttaaaccttaaactcatttaaataatcttc	Protospacer
.************* ********   . ..

47. spacer 1.21|385450|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ttgacggccctggtatggcgtatgtagttg	CRISPR spacer
aagacggccgtggtatggcgtatcccggca	Protospacer
  ******* ************* . * ..

48. spacer 1.22|385516|30|NZ_CP015195|CRT,CRISPRCasFinder,PILER-CR matches to MN694777 (Marine virus AFVG_250M80, complete genome) position: , mismatch: 9, identity: 0.7

ttatccgaagatgtgaactttaccctaccc	CRISPR spacer
gggtcagaagatgggaactttaccctcaat	Protospacer
  .** ******* ************   .

49. spacer 1.10|384723|30|NZ_CP015195|CRT,CRISPRCasFinder matches to NZ_CP024658 (Bacillus cereus strain MLY1 plasmid pMLY1.3, complete sequence) position: , mismatch: 10, identity: 0.667

atagaatgggttgtatttttagctctaaaa	CRISPR spacer
tctttctgagttgtatttttagctctattt	Protospacer
 .    **.******************

50. spacer 2.1|585679|32|NZ_CP015195|CRISPRCasFinder matches to MT701590 (Klebsiella phage Miami, complete genome) position: , mismatch: 10, identity: 0.688

ggaggctggcgacatcgggggcgggatagttg	CRISPR spacer
atgggctggtgatatcgggggcgggaataaag	Protospacer
. .******.**.*************  .  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1145690 : 1258454

106

Burkholderia_virus(13.33%)

head,tRNA,transposase,plate,terminase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168111124.1\|1145690_1146890_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_168111209.1\|1147106_1148273_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_168111210.1\|1148274_1149147_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_168111211.1\|1149398_1150178_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168111212.1\|1150286_1150865_+	replication initiation negative regulator SeqA	NA	NA	NA	NA
WP_168111213.1\|1150967_1152368_+	o-succinylbenzoate--CoA ligase	NA	NA	NA	NA
WP_168111214.1\|1155792_1156875_+	chorismate synthase	A0A291AU41	Pandoravirus	1.7e-88	47.0
WP_168111215.1\|1156990_1160293_+	mechanosensitive channel MscK	NA	NA	NA	NA
WP_168111216.1\|1160400_1161231_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_168111217.1\|1161356_1162691_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_168111218.1\|1162749_1163454_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_168112214.1\|1163717_1164608_-\|transposase	transposase	NA	NA	NA	NA
WP_168111219.1\|1164794_1165190_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_168111220.1\|1165252_1166230_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_168111221.1\|1166217_1166856_-	DUF1007 family protein	NA	NA	NA	NA
WP_168111222.1\|1167385_1168276_-	transcriptional regulator GcvA	Q6JIH3	Burkholderia_virus	1.2e-23	31.2
WP_168111223.1\|1168714_1169740_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_168111224.1\|1169867_1170212_+	RidA family protein	NA	NA	NA	NA
WP_168111225.1\|1170319_1171960_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_168111226.1\|1171988_1172348_-	diacylglycerol kinase	NA	NA	NA	NA
WP_168111227.1\|1172601_1173816_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_168111228.1\|1174090_1176490_+	glycogen/starch/alpha-glucan family phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	1.3e-11	42.0
WP_168111229.1\|1179455_1179770_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_168111230.1\|1179762_1180134_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_168111231.1\|1180198_1180582_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_168111232.1\|1180728_1181730_+	hypothetical protein	NA	NA	NA	NA
WP_168111233.1\|1181826_1182279_-	ci repressor-like protein	NA	NA	NA	NA
WP_168111234.1\|1182509_1182740_+	transcriptional regulator	M1PVU4	Vibrio_phage	1.3e-14	63.5
WP_168111235.1\|1182730_1184695_+\|transposase	transposase	M4M9R2	Vibrio_phage	5.6e-138	44.5
WP_168111236.1\|1184769_1185189_+	hypothetical protein	NA	NA	NA	NA
WP_168111237.1\|1185487_1186405_+	AAA family ATPase	M4M9P4	Vibrio_phage	1.4e-67	46.3
WP_168111238.1\|1186405_1186708_+	hypothetical protein	A0A0M3LQH1	Mannheimia_phage	3.4e-10	40.2
WP_168111239.1\|1186716_1187238_+	host-nuclease inhibitor protein Gam	F6MIJ0	Haemophilus_phage	2.4e-72	80.0
WP_168111240.1\|1187411_1187600_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_168111241.1\|1187609_1187804_+	hypothetical protein	NA	NA	NA	NA
WP_168111242.1\|1187916_1188624_+	DUF2786 domain-containing protein	A0A1W6DYA0	Aeromonas_phage	1.1e-22	33.5
WP_168111243.1\|1188616_1189174_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_168111244.1\|1189170_1189734_+	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	1.1e-43	50.0
WP_168111245.1\|1189884_1190241_+	transcriptional regulator	Q6QIE8	Burkholderia_phage	5.7e-25	49.2
WP_168111246.1\|1190328_1190856_+	hypothetical protein	NA	NA	NA	NA
WP_168111247.1\|1190873_1191095_+	excalibur calcium-binding domain-containing protein	A0A0R6PHV6	Moraxella_phage	1.8e-08	76.3
WP_168111248.1\|1191188_1191737_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	1.2e-82	78.5
WP_168110281.1\|1191740_1191896_+	hypothetical protein	NA	NA	NA	NA
WP_168111249.1\|1191895_1192111_+	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	3.2e-23	77.1
WP_168111250.1\|1192107_1192506_+	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_168111251.1\|1192505_1192835_+	DUF2730 family protein	NA	NA	NA	NA
WP_168111252.1\|1192837_1193128_+	hypothetical protein	A0A0C4UR00	Shigella_phage	5.2e-24	58.9
WP_168111253.1\|1193149_1193719_+	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	3.1e-33	40.9
WP_168112262.1\|1193699_1195013_+\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	1.3e-151	62.8
WP_168111254.1\|1195138_1196584_+	DUF935 family protein	A4JWJ5	Burkholderia_virus	1.1e-106	44.9
WP_168111255.1\|1196580_1197834_+\|head	phage head morphogenesis protein	J9STS2	Pseudomonas_phage	2.8e-58	51.7
WP_168111256.1\|1197954_1198416_+	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	3.5e-14	35.1
WP_168111257.1\|1198676_1199639_+	peptidase	A4JWJ9	Burkholderia_virus	2.8e-50	36.2
WP_168111258.1\|1199652_1200591_+	inorganic pyrophosphatase	A4JWK0	Burkholderia_virus	8.2e-87	55.3
WP_168111259.1\|1200680_1200965_+	hypothetical protein	NA	NA	NA	NA
WP_168111260.1\|1200948_1201386_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.7e-16	36.6
WP_168111261.1\|1201385_1201898_+	hypothetical protein	NA	NA	NA	NA
WP_168111262.1\|1201899_1203297_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	9.6e-100	44.7
WP_168111263.1\|1203296_1203818_+\|tail	phage major tail tube protein	Q858V0	Yersinia_virus	4.9e-09	26.1
WP_168111264.1\|1203909_1204194_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_168112263.1\|1204171_1204324_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_168111265.1\|1204308_1204593_-	hypothetical protein	NA	NA	NA	NA
WP_168111266.1\|1204637_1207211_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	2.8e-28	24.0
WP_168111267.1\|1207210_1208143_+\|tail	phage tail protein	NA	NA	NA	NA
WP_168111268.1\|1208135_1208366_+	hypothetical protein	Q6QIA3	Burkholderia_phage	5.2e-11	40.3
WP_168111269.1\|1208362_1209421_+	hypothetical protein	Q6QIA2	Burkholderia_phage	2.7e-62	42.4
WP_168111270.1\|1209395_1209977_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_168111271.1\|1210057_1210441_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_168111272.1\|1210430_1211546_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	2.2e-67	41.6
WP_168111273.1\|1211538_1212108_+\|tail	phage tail protein	Q6QI98	Burkholderia_phage	1.3e-39	45.8
WP_168111274.1\|1212117_1214664_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	6.1e-52	43.7
WP_168111275.1\|1214673_1215297_+	DUF4376 domain-containing protein	F6MIL9	Haemophilus_phage	2.0e-57	56.7
WP_168111276.1\|1215289_1215760_+	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	1.8e-66	73.4
WP_168111277.1\|1215896_1216685_+	hypothetical protein	F6MIM2	Haemophilus_phage	3.0e-106	68.7
WP_168111278.1\|1216799_1217345_+	transferrin-binding protein-like solute binding protein	NA	NA	NA	NA
WP_168111279.1\|1217408_1218809_+	DUF560 domain-containing protein	NA	NA	NA	NA
WP_168111280.1\|1220324_1221368_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_168111281.1\|1221437_1222421_+	elongation factor P--(R)-beta-lysine ligase	A0A2K9L0E9	Tupanvirus	1.2e-08	20.8
WP_168111282.1\|1222417_1222969_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	NA	NA	NA
WP_168111283.1\|1223027_1223867_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_168111284.1\|1223917_1224559_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_168111285.1\|1224694_1225780_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	A0A218MNE0	uncultured_virus	1.4e-82	44.4
WP_168111286.1\|1225862_1226912_+	ferric ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-33	37.7
WP_168111287.1\|1226992_1228033_+	selenide, water dikinase SelD	NA	NA	NA	NA
WP_168111288.1\|1228032_1229229_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_168111289.1\|1229313_1230276_-	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
WP_168111290.1\|1230595_1232179_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_168111291.1\|1232490_1233444_+	ABC transporter permease	NA	NA	NA	NA
WP_168111292.1\|1233443_1235399_+	dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-13	28.5
WP_168111293.1\|1235400_1236210_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-20	33.8
WP_168112224.1\|1236358_1236970_-\|transposase	transposase	NA	NA	NA	NA
WP_168111294.1\|1237398_1239111_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_168111295.1\|1239114_1239339_-	YejL family protein	NA	NA	NA	NA
WP_168111296.1\|1239690_1239867_+	type II toxin-antitoxin system HicA family toxin	A0A0R6PJD4	Moraxella_phage	2.5e-13	59.3
WP_168111297.1\|1239885_1240287_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	1.7e-41	58.6
WP_168111298.1\|1240473_1240716_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	1.3e-12	45.0
WP_168111299.1\|1240705_1240996_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	4.2e-26	63.8
WP_168112264.1\|1241052_1241490_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_168111300.1\|1242316_1251580_+	hypothetical protein	K4IGJ8	Salmonella_phage	4.7e-09	47.4
WP_168111301.1\|1251807_1252020_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_168111302.1\|1252101_1252992_+	HTH-type transcriptional activator IlvY	NA	NA	NA	NA
WP_168111303.1\|1253069_1253426_-	hypothetical protein	NA	NA	NA	NA
WP_168112214.1\|1253559_1254450_+\|transposase	transposase	NA	NA	NA	NA
WP_168111304.1\|1254576_1255980_-\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	1.3e-80	36.6
WP_168111305.1\|1256404_1257715_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_168111306.1\|1257734_1258454_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA

DBSCAN-SWA_2

1285101 : 1293456

Mannheimia_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168111334.1\|1285101_1285371_+	BrnT family toxin	K4NX81	Burkholderia_phage	2.2e-08	36.5
WP_168111335.1\|1285354_1285666_+	BrnA antitoxin family protein	A0A2H4J5Y5	uncultured_Caudovirales_phage	2.0e-05	47.3
WP_168111336.1\|1285890_1286910_+	DUF4325 domain-containing protein	NA	NA	NA	NA
WP_168111337.1\|1287057_1287483_-	HD domain-containing protein	D0UIJ3	Aggregatibacter_phage	1.0e-36	60.1
WP_168111338.1\|1287479_1287698_-	hypothetical protein	A0A0M3LPI7	Mannheimia_phage	2.2e-27	77.8
WP_168111339.1\|1287697_1288276_-	hypothetical protein	A0A0M3LQ07	Mannheimia_phage	1.6e-61	62.0
WP_168111340.1\|1288425_1289871_+	catalase	A0A2K9L572	Tupanvirus	2.8e-94	39.1
WP_168111341.1\|1289949_1290210_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_168111342.1\|1290206_1290458_-	YoeB-YefM toxin-antitoxin system antitoxin YefM	NA	NA	NA	NA
WP_168111343.1\|1292151_1293456_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.3e-94	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015195

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection