CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP048761	Campylobacter jejuni strain ZS004 chromosome, complete genome	1 crisprs	DEDDh,WYL,csa3	0	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048761_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048761_1

1361577-1361656

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048761_1

>merge|NZ_CP048761|1|1361577-1361656|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP048761|1|1|1361577-1361656|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048761.1\|WP_002859679.1\|1358337_1359540_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP048761.1\|WP_167844494.1\|1353506_1355348_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP048761.1\|WP_167844498.1\|1366107_1367229_-\|DUF829-domain-containing-protein	unknown	unknown	unknown
NZ_CP048761.1\|WP_087692144.1\|1367300_1368485_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP048761.1\|WP_052794210.1\|1359542_1360541_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP048761.1\|WP_002780440.1\|1364333_1364753_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048761.1\|WP_167844496.1\|1357669_1358341_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP048761.1\|WP_002818256.1\|1370547_1371060_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498
NZ_CP048761.1\|WP_038817136.1\|1361173_1361500_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP048761.1\|WP_002880393.1\|1361957_1363328_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP048761.1\|WP_044260654.1\|1351863_1353204_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP048761.1\|WP_002855429.1\|1363449_1363986_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP048761.1\|WP_002859677.1\|1353285_1353510_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP048761.1\|WP_167844495.1\|1356841_1357666_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP048761.1\|WP_052794213.1\|1355344_1356838_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP048761.1\|WP_167844497.1\|1360600_1361146_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP048761.1\|WP_126252341.1\|1368481_1370551_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP048761.1\|WP_002871991.1\|1371049_1371811_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224134
NZ_CP048761.1\|WP_002825806.1\|1363985_1364333_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP048761.1\|WP_002780438.1\|1364749_1366111_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035

Protein	Function_ID	Function_description	E-value
NZ_CP048761.1\|WP_002859679.1\|1358337_1359540_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP048761.1\|WP_167844494.1\|1353506_1355348_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP048761.1\|WP_087692144.1\|1367300_1368485_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP048761.1\|WP_052794210.1\|1359542_1360541_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.26379e-166
NZ_CP048761.1\|WP_002780438.1\|1364749_1366111_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NZ_CP048761.1\|WP_167844496.1\|1357669_1358341_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.01194e-84
NZ_CP048761.1\|WP_002818256.1\|1370547_1371060_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.09566e-100
NZ_CP048761.1\|WP_038817136.1\|1361173_1361500_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.19374e-36
NZ_CP048761.1\|WP_002880393.1\|1361957_1363328_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP048761.1\|WP_044260654.1\|1351863_1353204_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	4.1795e-119
NZ_CP048761.1\|WP_002855429.1\|1363449_1363986_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NZ_CP048761.1\|WP_002859677.1\|1353285_1353510_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	3.14137e-19
NZ_CP048761.1\|WP_167844495.1\|1356841_1357666_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP048761.1\|WP_052794213.1\|1355344_1356838_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	5.13344e-157
NZ_CP048761.1\|WP_167844497.1\|1360600_1361146_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.47763e-57
NZ_CP048761.1\|WP_126252341.1\|1368481_1370551_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP048761.1\|WP_002871991.1\|1371049_1371811_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	1.62446e-74
NZ_CP048761.1\|WP_002825806.1\|1363985_1364333_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40

>NZ_CP048761.1|WP_038817136.1|1361173_1361500_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGKV
>NZ_CP048761.1|WP_167844497.1|1360600_1361146_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEILDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEIYDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP048761.1|WP_052794210.1|1359542_1360541_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVINGKKIKVFKSRNVKDLDFAKYGTQIVLECTGAHLTMAKCQEFVDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVNKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP048761.1|WP_002859679.1|1358337_1359540_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKVGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP048761.1|WP_167844496.1|1357669_1358341_-|triose-phosphate-isomerase
MIFVANLKCNHTRASFKIYAEILNKTIGVKCDDIIVFPPSVAFLEKENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYERLIIAYEPIYSIGTGVSAQNTDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP048761.1|WP_167844495.1|1356841_1357666_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKEKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP048761.1|WP_052794213.1|1355344_1356838_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSNTCGISEVLSQKVVNIPGCPPSDVNIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFPEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP048761.1|WP_167844494.1|1353506_1355348_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINVLCKANMKVGNFSGVTIEKASAKTFYKNYEFEIIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKIIILFESKFISRSQFYTPLCEKSPEKEYLLYFINELSKKIITRKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGELVKNNISNTFIASALADGIIAGVGAVILFLPNIIILFLGIALLETTGYMSRIAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKNEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSISLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPISSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCISAYIVAFIGLHIAKILLN
>NZ_CP048761.1|WP_002859677.1|1353285_1353510_+|ferrous-iron-transport-protein-A
MTLDNLKDGQKAIIVNLSAQKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDASCVILRSDEAKTIEVNLI
>NZ_CP048761.1|WP_044260654.1|1351863_1353204_+|MmgE/PrpD-family-protein
MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTEKNTPIWVNDQKLDPIYAAMLDGIASHALDFDDTHTEAILHASAILTPLCLSYGFHVSKDAKKIIKAFIIGWEIAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHFAKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELNKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLESYENLKRKEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP048761.1|WP_002880393.1|1361957_1363328_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFICEQFSFLKDFNYKFGVDCTNGAAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSVIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIRALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFDDIKARFKN
>NZ_CP048761.1|WP_002855429.1|1363449_1363986_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP048761.1|WP_002825806.1|1363985_1364333_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP048761.1|WP_002780440.1|1364333_1364753_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP048761.1|WP_002780438.1|1364749_1366111_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP048761.1|WP_167844498.1|1366107_1367229_-|DUF829-domain-containing-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIEKNEQFPFFQISCEGVQTTYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGAMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP048761.1|WP_087692144.1|1367300_1368485_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGENVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP048761.1|WP_126252341.1|1368481_1370551_-|capsular-polysaccharide-biosynthesis-protein
MKHYSISKKLIANVRNFYTISLYKKKSKINKDDLFLGWGRKKSGLKAINLAKKYKAKFMLLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATAPSKLENLLNTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKGFKTVDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITENFNPVALLEFFDKVYTKTSGMGFEALMQECECICYGIPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYMLYSEYFNPYFNQKSNIFDTIQTLAKYKDIEKANSNRLFMLGFTLWKRHFIKPFFKAKDNKIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHENLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP048761.1|WP_002818256.1|1370547_1371060_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NZ_CP048761.1|WP_002871991.1|1371049_1371811_-|NTP-transferase-domain-containing-protein
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNEVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQDLIISYADIVYSQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048761_1	1.1\|1361600\|34\|NZ_CP048761\|CRISPRCasFinder	1361600-1361633	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 1.1|1361600|34|NZ_CP048761|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

354445 : 407097

Campylobacter_phage(53.12%)

tail,transposase,plate,terminase,tRNA,integrase

attL 353201:353220|attR 414737:414756

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
353201:353220	attL	NA	NA	NA	NA
WP_052782157.1\|354445_355405_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_002858681.1\|355415_356651_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-86	50.0
WP_052797833.1\|356660_359123_+	motility protein PflB	NA	NA	NA	NA
WP_070301795.1\|359153_359789_-	hypothetical protein	NA	NA	NA	NA
WP_167844321.1\|359886_361329_-	pyruvate kinase	NA	NA	NA	NA
WP_002895442.1\|361377_362724_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002860273.1\|362842_363472_-	type III pantothenate kinase	NA	NA	NA	NA
WP_087692111.1\|363458_363749_-	tram-like protein	NA	NA	NA	NA
WP_167842667.1\|363745_364744_-	hypothetical protein	NA	NA	NA	NA
WP_167842668.1\|364740_365319_-	hypothetical protein	NA	NA	NA	NA
WP_002858734.1\|365462_365747_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_002869932.1\|365812_366376_+	CvpA family protein	NA	NA	NA	NA
WP_002854230.1\|366377_366851_+	transcriptional repressor	NA	NA	NA	NA
WP_002858694.1\|366851_368357_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	5.7e-90	37.2
WP_052793924.1\|368353_369598_+	serine hydroxymethyltransferase	A0A219YB23	Aeromonas_phage	1.6e-101	51.7
WP_002859481.1\|369594_370140_+	DUF1882 domain-containing protein	NA	NA	NA	NA
WP_002869928.1\|370153_370990_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_052782166.1\|370986_371775_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002872729.1\|372325_373345_-	hypothetical protein	NA	NA	NA	NA
WP_167844322.1\|373463_374093_+	S24 family peptidase	A7YG70	Campylobacter_phage	2.2e-56	94.7
WP_002865000.1\|374173_374494_+	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_167844323.1\|374503_374698_+	hypothetical protein	A7YG72	Campylobacter_phage	3.9e-28	98.4
WP_002865289.1\|374777_375065_+	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
WP_052823652.1\|375094_375910_-	DNA adenine methylase	A7YGG5	Campylobacter_phage	3.1e-151	99.6
WP_002875578.1\|376013_376502_-	virion morphogenesis protein	A7YG96	Campylobacter_phage	1.6e-89	100.0
WP_167844324.1\|376505_378728_-\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	0.0e+00	99.7
WP_002784655.1\|378769_379075_+	hypothetical protein	A7YG98	Campylobacter_phage	4.7e-36	100.0
WP_167844325.1\|379186_379426_-\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	7.0e-11	60.9
WP_002865376.1\|379578_380088_-\|tail	tail protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_167844326.1\|380114_381308_-\|tail	phage tail sheath family protein	A7YGY2	Campylobacter_phage	3.2e-197	98.2
WP_167844327.1\|381326_382334_-	hypothetical protein	A7YGT6	Campylobacter_phage	4.2e-190	99.1
WP_002909498.1\|382433_382805_-	DUF1353 domain-containing protein	A7YGA5	Campylobacter_phage	3.3e-68	99.2
WP_002878909.1\|382801_383308_-	DUF4376 domain-containing protein	A7YGK2	Campylobacter_phage	2.0e-87	100.0
WP_052782952.1\|383332_384364_-\|tail	phage tail protein	A7YGK4	Campylobacter_phage	8.1e-189	100.0
WP_002878911.1\|384363_384984_-\|tail	phage tail protein I	A7YH02	Campylobacter_phage	2.8e-59	96.6
WP_002878912.1\|384980_386147_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002795239.1\|386143_386434_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002795238.1\|386430_386622_-	hypothetical protein	NA	NA	NA	NA
WP_032582447.1\|386630_387263_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	1.7e-08	34.6
WP_002784492.1\|387262_387577_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|387688_387937_-	hypothetical protein	NA	NA	NA	NA
WP_002854893.1\|387933_388275_-	hypothetical protein	NA	NA	NA	NA
WP_021034186.1\|388285_388675_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	1.7e-22	46.7
WP_002784501.1\|388823_389258_+	hypothetical protein	NA	NA	NA	NA
WP_002876306.1\|389259_390075_+	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002784505.1\|390077_390605_+	hypothetical protein	NA	NA	NA	NA
WP_002865469.1\|390607_391585_+	hypothetical protein	R9TRN2	Rhizobium_phage	3.3e-06	23.4
WP_002855185.1\|391700_392159_+	DUF1320 family protein	NA	NA	NA	NA
WP_002803360.1\|392151_392751_+	DUF1804 family protein	NA	NA	NA	NA
WP_167844328.1\|392863_394420_+\|terminase	phage terminase large subunit	A0A076FR23	Pseudomonas_phage	2.8e-92	42.8
WP_167844329.1\|394429_395800_+	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	4.5e-17	26.6
WP_002865473.1\|395801_397040_+	hypothetical protein	A0A0A1IX74	Pseudomonas_phage	9.6e-19	28.4
WP_002784519.1\|397164_397539_+\|tail	tail protein	NA	NA	NA	NA
WP_002791401.1\|397531_397723_+\|tail	tail protein	NA	NA	NA	NA
WP_052782948.1\|397716_398694_+\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_167844330.1\|398663_399527_-	hypothetical protein	NA	NA	NA	NA
WP_052782947.1\|399498_399702_-	CJH_07325 family protein	J9SI91	Campylobacter_phage	1.5e-06	48.1
WP_002784523.1\|399822_400107_-	DNA-binding protein	NA	NA	NA	NA
WP_002803343.1\|400173_400611_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_167844331.1\|400607_401300_-	hypothetical protein	NA	NA	NA	NA
WP_167844332.1\|401299_401569_-	hypothetical protein	NA	NA	NA	NA
WP_167844333.1\|401565_402528_-	hypothetical protein	NA	NA	NA	NA
WP_002872701.1\|402586_403072_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	6.4e-19	33.3
WP_002791419.1\|403178_403520_-	hypothetical protein	NA	NA	NA	NA
WP_167844334.1\|403652_403838_-	hypothetical protein	NA	NA	NA	NA
WP_002791422.1\|403834_404026_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_167844335.1\|404028_404952_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_052797570.1\|405021_407097_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
414737:414756	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage