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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP050903 Nocardioides sp. JQ2195 plasmid pNOC1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP050902 Nocardioides sp. JQ2195 chromosome, complete genome 7 crisprs csa3,WYL,DEDDh,cas4,cas3,DinG 1 3 2 0

Results visualization

1. NZ_CP050902
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050902_1 529016-529093 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050902_2 721501-721595 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050902_3 1115863-1115927 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050902_4 1934834-1934929 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050902_5 2219504-2219582 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050902_6 2542650-2542748 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050902_7 2845170-2845291 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP050902_2 2.1|721524|49|NZ_CP050902|CRISPRCasFinder 721524-721572 49 NZ_CP050902.1 721560-721608 2 0.959

1. spacer 2.1|721524|49|NZ_CP050902|CRISPRCasFinder matches to position: 721560-721608, mismatch: 2, identity: 0.959

ccgcagccgcagccgcagccgccgtaccccggccagccgcagccgcagc	CRISPR spacer
ccgcagccgcagccgcagccgccgtaccccggccaggggcagccgcagc	Protospacer
************************************  ***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050902_3 3.1|1115886|19|NZ_CP050902|CRISPRCasFinder 1115886-1115904 19 MK937609 Gordonia phage Sekhmet, complete genome 43430-43448 0 1.0
NZ_CP050902_5 5.1|2219528|31|NZ_CP050902|CRISPRCasFinder 2219528-2219558 31 NZ_LR134455 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence 234959-234989 5 0.839
NZ_CP050902_5 5.1|2219528|31|NZ_CP050902|CRISPRCasFinder 2219528-2219558 31 MN908694 Microbacterium phage RubyRalph, complete genome 8658-8688 6 0.806
NZ_CP050902_5 5.1|2219528|31|NZ_CP050902|CRISPRCasFinder 2219528-2219558 31 NC_011887 Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence 47874-47904 6 0.806
NZ_CP050902_1 1.1|529040|30|NZ_CP050902|CRISPRCasFinder 529040-529069 30 NZ_CP034394 Herbaspirillum seropedicae strain AU13965 plasmid unnamed, complete sequence 25018-25047 7 0.767
NZ_CP050902_1 1.1|529040|30|NZ_CP050902|CRISPRCasFinder 529040-529069 30 NC_015583 Novosphingobium sp. PP1Y plasmid Mpl, complete sequence 788130-788159 7 0.767
NZ_CP050902_1 1.1|529040|30|NZ_CP050902|CRISPRCasFinder 529040-529069 30 NZ_LN832562 Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence 454731-454760 8 0.733
NZ_CP050902_1 1.1|529040|30|NZ_CP050902|CRISPRCasFinder 529040-529069 30 NZ_LN832562 Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence 658415-658444 8 0.733
NZ_CP050902_1 1.1|529040|30|NZ_CP050902|CRISPRCasFinder 529040-529069 30 NZ_CP049141 Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_2, complete sequence 125845-125874 8 0.733

1. spacer 3.1|1115886|19|NZ_CP050902|CRISPRCasFinder matches to MK937609 (Gordonia phage Sekhmet, complete genome) position: , mismatch: 0, identity: 1.0

accccgtccgagaccgcgc	CRISPR spacer
accccgtccgagaccgcgc	Protospacer
*******************

2. spacer 5.1|2219528|31|NZ_CP050902|CRISPRCasFinder matches to NZ_LR134455 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence) position: , mismatch: 5, identity: 0.839

--ggtcaccagtcggacggcgcctcgagcgagt	CRISPR spacer
gcggtca--ggtcggaccgcgccgcgagcgagt	Protospacer
  *****  .******* ***** *********

3. spacer 5.1|2219528|31|NZ_CP050902|CRISPRCasFinder matches to MN908694 (Microbacterium phage RubyRalph, complete genome) position: , mismatch: 6, identity: 0.806

ggtcaccagtcggacggcgcctcgagcgagt	CRISPR spacer
tcccaccagtcggccggcgcctcgatcgaga	Protospacer
  .********** *********** **** 

4. spacer 5.1|2219528|31|NZ_CP050902|CRISPRCasFinder matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 6, identity: 0.806

--ggtcaccagtcggacggcgcctcgagcgagt	CRISPR spacer
ctgttca--agtcggtcggcgcctcgatcgagg	Protospacer
  * ***  ****** *********** **** 

5. spacer 1.1|529040|30|NZ_CP050902|CRISPRCasFinder matches to NZ_CP034394 (Herbaspirillum seropedicae strain AU13965 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

aaggcccaggccaggttcgaggcccaggtt	CRISPR spacer
gagctccaggccatgttcgcggcccaggcc	Protospacer
.** .******** ***** ********..

6. spacer 1.1|529040|30|NZ_CP050902|CRISPRCasFinder matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 7, identity: 0.767

aaggcccaggccaggttcgaggcccaggtt	CRISPR spacer
gatgatctggccgggttcgaggcccaggta	Protospacer
.* * .* ****.**************** 

7. spacer 1.1|529040|30|NZ_CP050902|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 8, identity: 0.733

aaggcccaggccaggttcgaggcccaggtt	CRISPR spacer
agctgcccggccaggtccgaggcccaggcc	Protospacer
*.   ** ********.***********..

8. spacer 1.1|529040|30|NZ_CP050902|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 8, identity: 0.733

aaggcccaggccaggttcgaggcccaggtt	CRISPR spacer
agctgcccggccaggtccgaggcccaggcc	Protospacer
*.   ** ********.***********..

9. spacer 1.1|529040|30|NZ_CP050902|CRISPRCasFinder matches to NZ_CP049141 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_2, complete sequence) position: , mismatch: 8, identity: 0.733

aaggcccaggccaggttcgaggcccaggtt	CRISPR spacer
accgcccaggccagcttcgaggccagcatc	Protospacer
*  *********** ********* . .*.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2163824 : 2236366 59 Corynebacterium_phage(37.5%) transposase NA
DBSCAN-SWA_2 2801070 : 2841459 52 Mycobacterium_phage(22.22%) terminase,portal,integrase,capsid attL 2801023:2801041|attR 2810990:2811008
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage