CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP050974	Streptomyces sp. RLB1-33 chromosome, complete genome	14 crisprs	cas14j,c2c9_V-U4,csa3,c2c10_CAS-V-U3,WYL,Cas14u_CAS-V,RT,DEDDh,cas4,Cas9_archaeal,cas3,DinG	0	3	20	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050974_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_1

2879804-2879905

Orphan

Consensus_repeat	Method
GGACGAAGCCCCGCCGCCAGGCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_1

>merge|NZ_CP050974|1|2879804-2879905|CRISPRCasFinder
GGACGAAGCCCCGCCGCCAGGCCCGGAGCCGAGCGACTGGATATCCTCGCCGCAGGCCGACACACCGCGCCGACCGGGACGAAGCCCCGCCGCCGGGCCCGG

>NZ_CP050974|1|1|2879804-2879905|CRISPRCasFinder
GGACGAAGCCCCGCCGCCAGGCCCGG	AGCCGAGCGACTGGATATCCTCGCCGCAGGCCGACACACCGCGCCGACCG
GGACGAAGCCCCGCCGCCGGGCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_054230651.1\|2866723_2866915_+\|DUF1918-domain-containing-protein	unknown	unknown	gnl\|CDD\|378101
NZ_CP050974.1\|WP_168490127.1\|2877436_2878606_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225115
NZ_CP050974.1\|WP_095933127.1\|2869798_2870344_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP050974.1\|WP_168490130.1\|2882562_2883294_-\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP050974.1\|WP_168490129.1\|2881060_2881816_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP050974.1\|WP_168490125.1\|2868420_2869281_+\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|181133
NZ_CP050974.1\|WP_168500925.1\|2889556_2890411_-\|DUF2510-domain-containing-protein	unknown	unknown	gnl\|CDD\|378480
NZ_CP050974.1\|WP_168490128.1\|2878659_2879517_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP050974.1\|WP_054236131.1\|2880230_2880614_-\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP050974.1\|WP_054236124.1\|2869506_2869764_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490126.1\|2876131_2877256_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP050974.1\|WP_007829094.1\|2880710_2880905_-\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP050974.1\|WP_168490132.1\|2884514_2885777_-\|type-VII-secretion-associated-serine-protease-mycosin	unknown	unknown	gnl\|CDD\|274856
NZ_CP050974.1\|WP_099923597.1\|2870451_2871792_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP050974.1\|WP_054236133.1\|2882159_2882516_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500923.1\|2866955_2868194_-\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|224563
NZ_CP050974.1\|WP_168500924.1\|2872108_2873080_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP050974.1\|WP_168500926.1\|2890460_2891702_-\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|273653
NZ_CP050974.1\|WP_168490133.1\|2888347_2889550_+\|amino-acid-deaminase/aldolase	unknown	unknown	gnl\|CDD\|143488
NZ_CP050974.1\|WP_168490131.1\|2883443_2884412_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_054230651.1\|2866723_2866915_+\|DUF1918-domain-containing-protein	gnl\|CDD\|378101	pfam08940, DUF1918, Domain of unknown function (DUF1918). This domain, found in various hypothetical bacterial proteins, has no known function.	6.13344e-24
NZ_CP050974.1\|WP_168490127.1\|2877436_2878606_-\|PAS-domain-containing-protein	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	2.40767e-53
NZ_CP050974.1\|WP_095933127.1\|2869798_2870344_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	8.1702e-26
NZ_CP050974.1\|WP_168490130.1\|2882562_2883294_-\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	6.42404e-20
NZ_CP050974.1\|WP_168490129.1\|2881060_2881816_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.56401e-98
NZ_CP050974.1\|WP_007829094.1\|2880710_2880905_-\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	4.08806e-20
NZ_CP050974.1\|WP_168500925.1\|2889556_2890411_-\|DUF2510-domain-containing-protein	gnl\|CDD\|378480	pfam10708, DUF2510, Protein of unknown function (DUF2510). This is family of proteins conserved in Actinobacteria. Many members are annotated as putative membrane proteins but this could not be confirmed.	3.07741e-08
NZ_CP050974.1\|WP_168490128.1\|2878659_2879517_-\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	1.20475e-66
NZ_CP050974.1\|WP_054236131.1\|2880230_2880614_-\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	5.91312e-60
NZ_CP050974.1\|WP_168500926.1\|2890460_2891702_-\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|273653	TIGR01488, Phosphoserine_phosphatase, Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences. [Unknown function, Enzymes of unknown specificity].	2.16208e-05
NZ_CP050974.1\|WP_168490126.1\|2876131_2877256_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP050974.1\|WP_168490132.1\|2884514_2885777_-\|type-VII-secretion-associated-serine-protease-mycosin	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	3.67941e-104
NZ_CP050974.1\|WP_168490125.1\|2868420_2869281_+\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|181133	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	0
NZ_CP050974.1\|WP_168500923.1\|2866955_2868194_-\|family-10-glycosylhydrolase	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	3.97186e-80
NZ_CP050974.1\|WP_168500924.1\|2872108_2873080_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	5.75527e-37
NZ_CP050974.1\|WP_168490133.1\|2888347_2889550_+\|amino-acid-deaminase/aldolase	gnl\|CDD\|143488	cd06813, PLPDE_III_DSD_D-TA_like_2, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible members of this family also form dimers in solution.	0
NZ_CP050974.1\|WP_168490131.1\|2883443_2884412_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.29478e-07

>NZ_CP050974.1|WP_168490128.1|2878659_2879517_-|RNA-methyltransferase
MPAAPELISPRSPRVAAARRLARRNFRGKERLFLAEGPQAVREATAHRVDGAATLVELFATVEAAERYADIVGDARTVGARVHLADEEVIADISTTVTPQGLVGICRFLDTPFEEILTARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVEAAVRGLKDAGVRILAADGAGEDDLDDELDKGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRASGGCRSVTDS
>NZ_CP050974.1|WP_168490127.1|2877436_2878606_-|PAS-domain-containing-protein
MGVGTSGAKSALRARDVRDTPAPPRAGLGSEPGGELGIDPDDLPDGLVIADENGRVICFNAAAARITAVPAAAALGHHLESALPLEDLEGRRWWQLTDPYGGLAIRVGQPERNLLLPGGREVLVSARYVRTAPTGPVRRVVVSLRDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKKLMLETVDADANRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVTSGQPADRFLLRIEQPLPPLWADPDKIDQVLSNLLENAVRHGEGTVTIDVTPSASPREREDGENAATSVTVSDEGTGIPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPGGGAEFRFTLPVGTPAYLL
>NZ_CP050974.1|WP_168490126.1|2876131_2877256_-|phenylalanine--tRNA-ligase-subunit-alpha
MSAPNKSYDPVEVEALKPEEIERMRDEALAAFAAAGDLDALQEAKVSHTGGTSPLALANREIGALPPHAKAAAGKLVGQARGAVNKALGARQAELEAERDARVLVEEAVDVTLPYDRVPSGARHPLTTMMERVADVFVSMGYEIAEGPEVEAEWFNFDALNFTPDHPARQMQDTFFVEGPRGDHGESGVVLRTHTSPVQARAMLDREPPVYVVCPGRVFRTDELDATHTPVFHQIELLAVDEGLTMADLKGTLDHMVQSLFGADMKTRLRPNYFPFTEPSAEMDMLCYVCKGESVGNPDRPCRTCSSEGWIELGGCGMVNPRVLVACGVDPEKYSGFAFGFGIERMLMFRHNVEDMRDMVEGDVRFTRPFGMEI
>NZ_CP050974.1|WP_168500924.1|2872108_2873080_-|SpoIIE-family-protein-phosphatase
MTCPLAQRDGLEARIVTSAVFFAVGTGLILHVRRALLRELRQIRKVAGAAQSVLLRPLPPRIDGLNIAAAQLSADHGANIGGDLYEVIATEYGVRVVMGDVRGHGLGAIGTVAAVLGSFREAVHDEPELASVLRRLERALARHLRERARAEHPSAGPEPDSPVAEEFVTVLLLEIRRDGEVYALNCGHPSPYRLGTGRVEPLTGAEPLPPLGPFPLPAELAATRCGRLLPGEALFLHTDGVEDARDQRGCFFPLPATLSRAVRVQQFSPQSVLRTVLTDLLRHSGGRPADDVAVLILRNDRSRVTPTQQGHSVAQQVTRAQGF
>NZ_CP050974.1|WP_099923597.1|2870451_2871792_-|transcriptional-regulator
MQPNTLLDAILDEAGISHAGLAAHVNQAGRARGLALRYEHTAVARWLKGQRPRGQVPDLICEVLAGRLHRPVTLDDIGLGVPGEPSAPHGTSLSGFVERATALWRSDEQQRPHLLGAPAVTGTPAVMPVWEWENPPEDVDVSRGGRHHVSMADIEMLRAARAHYEQMYRKAGGVATRSRIVGFLNAETAPLLRGSYPDATGRQLHRATGGLVAIAGICAYDSDAHGLAQRYFHQALRLAKASGDRGLGAYVIALLVNQSLFMREHRQAVAFAEAALRAAGRHITPALASDLYAMQAKAYAHLGDGSSALSCIRRAEQAAERIRRGYEPDETGYVQPGLVNVQVAEALLSLGDLVAAAAHAEAAVDTPAHDRGRVHRLAMLSQIELRQGNADKAVATAVQMAEQARGMESQRLRDRLRAVREHLVRSGCAGTAEAAELIDGALRVPL
>NZ_CP050974.1|WP_095933127.1|2869798_2870344_-|NUDIX-hydrolase
MQWTKQNEQTVYANRWFSVNLADVELPDGRHLDHFLIRLRPVAVATVVNEANEVLLLWRHRFITDSWGWELAAGVVEDGEDIAVAAARELEEETGWRPGPLRHLMSVEPSNGLTDARHHIFWADEGAYIGHPVDDFESDRREWVPLKLVPDMVARGEVPAANMAAALLLLHHLRLGQDALP
>NZ_CP050974.1|WP_054236124.1|2869506_2869764_+|hypothetical-protein
MTADPEHPVVHGELAELRRRLDVAYARVEGGHALLSHRAEQTAKELDDLSARVVALEHTRWPLPAIAALTAVGALAVAVWQALGR
>NZ_CP050974.1|WP_168490125.1|2868420_2869281_+|3-hydroxybutyryl-CoA-dehydrogenase
MTDIERVGVVGCGQMGAGIAEVCARAGLDVKVAETTGEALEIGRTRLFNSLSKAAERGKISADELTATQERLSFTTDLGEFADRDLVIEAVVENEQVKTEIFQVLDQVVTRQDAILASNTSSIPLVRLAVATSRPDQVVGIHFFNPAPVQQLVELIPALTTSEGTLGRAQLFAEKALGKHAIRAQDRSGFVVNALLIPYLLSAIRMFESGIASREDIDNGMELGCAHPMGPLKLSDLIGLDTVASVAYSMYEEYKEPLYAAPPLLQRMVDAGRLGRKSGSGFYTYA
>NZ_CP050974.1|WP_168500923.1|2866955_2868194_-|family-10-glycosylhydrolase
MRWGSRRAFTVAAMATLTGLVTTGEPGLVTAGDPAGVPRAGATPGPGRRRTVSELRGMWLSTVTNRDWPSRTGLSAAQQRAELLAHLDRAVDHRLNAVFFQVRPTADAFWPSSYEPWSQYLTGVQGRDPGWDPLGTAVREAHARGLELHAWFNPYRIANHTDPGRLVATHPARKHPDWVVPYGGRLYYNPGLPEVRAFVQDAMLDAVRTYAIDAVHWDDYFYPYPAEGQVFDDDAAYRTHGAGFANRAAWRRDNIDRLVRETATRIPLIRPGTRFGISPFGVWRNSATDPRGSDTRAAVQTYDDLYADTRKWVREQWIDYVVPQVYWNLGFAAADYAKLVPWWAAVYKAGDPAQPAAWQDPAELSRHLTFARDHTQVRGHVFFSAKEVDVDRVGAMARVATDHYQRPARPAR
>NZ_CP050974.1|WP_054230651.1|2866723_2866915_+|DUF1918-domain-containing-protein
MHADVGDKLVQHGRVVGQHDKVAEITEVIGTEGTPPYRVRFTDGHEAICSPGPDSEIRHKDPL
>NZ_CP050974.1|WP_054236131.1|2880230_2880614_-|50S-ribosomal-protein-L20
MARVKRAVNAHKKRRAILEAASGYRGQRSRLYRKAKEQVTHSLVYNYNDRKKRKGDFRQLWIQRINAAARANGITYNRFIQGLKAANIEVDRKILAELAVNDAGAFAALVEVAQKALPSDVNAPKAA
>NZ_CP050974.1|WP_007829094.1|2880710_2880905_-|50S-ribosomal-protein-L35
MPKNKSHSGASKRFKVTGSGKVLRERAGKRHLLEHKSSRLTRRLTGNAEMAPGDAKKIKKLLGK
>NZ_CP050974.1|WP_168490129.1|2881060_2881816_-|translation-initiation-factor-IF-3
MSSETYAAVRQTAVWCYRGGSISTEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMDYGKFKYESAMKAREARKNQAHTVIKEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGYRLLQRLASDVEDLGFVESNPKQDGRNMIMVLGPHKKKTEAMAEAREAQAARKAEAKANPGRSQNAADGELAEGEIAEGETTEAETAEAPAEASAEA
>NZ_CP050974.1|WP_054236133.1|2882159_2882516_+|hypothetical-protein
MSDTPPQNPDFDSMTRDIAEVPAVEVLVTVAVNLMSAAAVKLGLTEEGDKYKDLDEARKLIHALAGLLDASATEISSFHASPLRDGLKSLQLAFREASIVPDEPGQGPGEKYTGPIYG
>NZ_CP050974.1|WP_168490130.1|2882562_2883294_-|SseB-family-protein
MANKNIPDSGFPDDDGSADPRLSAALAAWAEDRTAVRPVLEALKGARLLVPVVAVLGEVEEDENGLRHEKTSDMAVPTLKAGHRTALPAFTSTESLARWDPAARPVAVPLHQALQAAAHEKADTVVLDLAGPVPYELTGSALLALAEGRTTADPLADPAVVEAVRAAVAAEPAVLRAHLGPGEADGTLALVLDPNAAPAEAARALAGRLAADETLRARLVRGLDLALLPAGTTPPGEPLYVRQ
>NZ_CP050974.1|WP_168490131.1|2883443_2884412_+|serine-hydrolase
MAPHRARRRRTRHSGRRTLVHIVVASAVLVGGTAAGAVYVKAQAHDRRSLVSSPSASPGTSSSASAASSPSQETSVEPVTKPTVDRDALLTKAMKAVALEDGAEVSVAVFDIDSGEGAAYGEGAFDTASIVKVDILATLLLQAQDADRHLTATEKTYATAMITNSDNASASALWDIIGQADGLDAANKRFGLTDTSGGDGALWGLTQTTAADQLTLLQQVFGDDSELSEASRTYLQGLMGEIAADQHWGVSAAADGTQWALKNGWLARSSTGLWDINSIGRVTVDGAEYLVATLSNGNTTKAKGISVVEAAAKAAVAAFGSA
>NZ_CP050974.1|WP_168490132.1|2884514_2885777_-|type-VII-secretion-associated-serine-protease-mycosin
MTRKATTSRATTHKATHKAIRKASRRATQRAGALSVLLAASLALLPSTAAHADGIRAQEWALDAMHTQQAWRTTKGQGITVAVLDTGVDDQHPDLAGNVLTGKDMVGFGAQRGDRAWARHGTAMAGIIAGHGHGVGNGDGVLGIAPEAKILPVRVILEDGDSARTRARNTRGNALAEGIRWATDQGADVINLSLGDDSKSAHPEPAEDAAVQYALKKGAVVVASAGNGGEKGDHISYPAAYPGVIAATAVDQNGTRASFSTRRWYATVSAPGVDVVIADPDDKYYEGWGTSAASAFVSGAVALIKAAHPGLSPAQIKKLLEDTARNAPSGGRDDSRGFGFIDPAAAIEAAGRLKPDSTHAAAYGKKYFGMGPDAAPDDNQPSGWVGPAAGGAGVLLLAASVILWRGRRFSGQDVSGDVPL
>NZ_CP050974.1|WP_168490133.1|2888347_2889550_+|amino-acid-deaminase/aldolase
MTARAADRARYDRATAHLDAPLAIVDLEAFDANADDLVRRAGGKPIRVASKSVRCRALLERVLERDGFAGIMSFTLAESIWLARSGFDDILLAYPSADTQGFAELTSDPKLAAVVTVMVDDPAQLRLIDEARRGGTEVVRVCLELDTSLKLLGGRVRVGALRSPLHSPAQVADLARAVVRRPGFKLVGIMAYEGHVAGVGDAVAGRPFRSRAIRLMQATARKELAQRRAEVVRAVRAVEPDLEYVNGGGTGSVQHTAAEDAVTEIAAGSGLYVPRLFDNYTSFSGRPAALFAHPVVRRPGVGVVTVLGGGYPASGAPGPDRLPVPHLPEGLRYDPQEGPGEVQTPLLGAPADDLLIGDKVWFRHAKAGELCERFDALHLIEGDTVTAAVPTYRGEGHTFL
>NZ_CP050974.1|WP_168500925.1|2889556_2890411_-|DUF2510-domain-containing-protein
MTPPPGWYRDPAYPLVERWWDGTAWTDHRRAPEAPQVPLAPPQPVAAGSGRAKAVALVTAGVVLVTSIVTGAFVLGREGGGGGAAATRTTPAAAPAQTTGSPAGPSSADPSVVVDELNGIALPLLDGWVRAQDVAEDDVMMTTPGTYDCPGDPGLCRHGRVISRTVTANDERSPKALAEHDIADAANTAYDRDLLDNRPFHGVTSHRQLRASPVAVAGSVGYLVRWQVKTGVGPGGYVESLAFPSGVGSRALVIVRFVFDAGADGPPLTDMDRITQGIRPVGTR
>NZ_CP050974.1|WP_168500926.1|2890460_2891702_-|haloacid-dehalogenase-like-hydrolase
MRSCHFRVDPGRGRHPGGRAGPRPDCPRLSAPWYGDNRAHLQQVIDERGTCAGPIPPAGRPVAAFDWDNTVTKNDVTDATLAWALGHDKILRPARWRDTSQWLTDAADRALTAACGTTTPAGAPLPTSAEPRCADEILEIRENGRTMSGAAAFAGTWNHRRTVPQYAWVPQLFAGRTVAELTSYARSARAQALAAPLGSTRTLGTHTLPAYVRYYDQQRELIRTLQRAGFDVYVVSAGAEPVTEVWSRGVGIDARHTIAIRSVLDRRGRITTWNEGCGGVPATRGEAIPYIDGKRCWINQEIYGVHGAAAWQRQDPRHRTALAAGDADTDVTFVGDATGAHLVLNRNKSELMCRAYDDADGRWVINPMFIGPLPRRPEPYPCATSAHNATGGGGEPVLRDDGSVVPDQKDTVY

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Crispr_ID: NZ_CP050974_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_2

2923224-2923327

Orphan

Consensus_repeat	Method
GGAACTGCGCGCCCAGCCACGAACGACCCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_2

>merge|NZ_CP050974|2|2923224-2923327|CRISPRCasFinder
GGAACTGCGCGCCCAGCCACGAACGACCCGCAGCTCCAAACCCACAGCACGCCCCACCCACCAGGGGCGCGGGGAACTGCGCACCCAGCCACGAACGACCCGCA

>NZ_CP050974|2|2|2923224-2923327|CRISPRCasFinder
GGAACTGCGCGCCCAGCCACGAACGACCCGCA	GCTCCAAACCCACAGCACGCCCCACCCACCAGGGGCGCGG
GGAACTGCGCACCCAGCCACGAACGACCCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168490158.1\|2922553_2923180_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP050974.1\|WP_101406123.1\|2920241_2920649_-\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|367422
NZ_CP050974.1\|WP_097283982.1\|2924330_2924936_+\|urea-carboxylase-associated-family-protein	unknown	unknown	gnl\|CDD\|132465
NZ_CP050974.1\|WP_168490161.1\|2928584_2930246_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
NZ_CP050974.1\|WP_168490152.1\|2915083_2916634_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|132469
NZ_CP050974.1\|WP_168490166.1\|2936249_2936534_-\|Sec-independent-protein-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|234797
NZ_CP050974.1\|WP_168490155.1\|2919206_2919827_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NZ_CP050974.1\|WP_168490150.1\|2913000_2914017_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|130256
NZ_CP050974.1\|WP_168490164.1\|2934329_2935220_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|237021
NZ_CP050974.1\|WP_168490163.1\|2931427_2934289_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|226947
NZ_CP050974.1\|WP_168490160.1\|2924932_2928448_+\|5-oxoprolinase/urea-amidolyase-family-protein	unknown	unknown	gnl\|CDD\|274264
NZ_CP050974.1\|WP_168490159.1\|2923509_2924334_+\|DUF1989-domain-containing-protein	unknown	unknown	gnl\|CDD\|163257
NZ_CP050974.1\|WP_168490162.1\|2930417_2931344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490153.1\|2916670_2917618_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_CP050974.1\|WP_168490165.1\|2935251_2936202_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|376413
NZ_CP050974.1\|WP_168490167.1\|2936792_2936987_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490154.1\|2917634_2919104_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP050974.1\|WP_168490157.1\|2920645_2922262_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340391
NZ_CP050974.1\|WP_168490156.1\|2919807_2920245_-\|DUF742-domain-containing-protein	unknown	unknown	gnl\|CDD\|283084
NZ_CP050974.1\|WP_168490151.1\|2914208_2914859_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168490158.1\|2922553_2923180_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.80843e-13
NZ_CP050974.1\|WP_101406123.1\|2920241_2920649_-\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	2.95138e-23
NZ_CP050974.1\|WP_097283982.1\|2924330_2924936_+\|urea-carboxylase-associated-family-protein	gnl\|CDD\|132465	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	4.01404e-132
NZ_CP050974.1\|WP_168490161.1\|2928584_2930246_+\|allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
NZ_CP050974.1\|WP_168490152.1\|2915083_2916634_+\|amino-acid-permease	gnl\|CDD\|132469	TIGR03428, ureacarb_perm, permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.	0
NZ_CP050974.1\|WP_168490166.1\|2936249_2936534_-\|Sec-independent-protein-translocase-subunit-TatA	gnl\|CDD\|234797	PRK00575, tatA, Sec-independent protein translocase subunit TatA.	2.03061e-29
NZ_CP050974.1\|WP_168490155.1\|2919206_2919827_-\|ATP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	1.05308e-40
NZ_CP050974.1\|WP_168490150.1\|2913000_2914017_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	6.40331e-105
NZ_CP050974.1\|WP_168490164.1\|2934329_2935220_-\|diacylglycerol-kinase	gnl\|CDD\|237021	PRK11914, PRK11914, diacylglycerol kinase; Reviewed.	5.6883e-107
NZ_CP050974.1\|WP_168490163.1\|2931427_2934289_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|226947	COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair].	0
NZ_CP050974.1\|WP_168490160.1\|2924932_2928448_+\|5-oxoprolinase/urea-amidolyase-family-protein	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP050974.1\|WP_168490159.1\|2923509_2924334_+\|DUF1989-domain-containing-protein	gnl\|CDD\|163257	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	3.8565e-118
NZ_CP050974.1\|WP_168490153.1\|2916670_2917618_+\|pseudouridylate-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	1.44655e-133
NZ_CP050974.1\|WP_168490165.1\|2935251_2936202_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|376413	pfam00902, TatC, Sec-independent protein translocase protein (TatC). The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.	3.49945e-76
NZ_CP050974.1\|WP_168490154.1\|2917634_2919104_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.12581e-41
NZ_CP050974.1\|WP_168490157.1\|2920645_2922262_-\|sensor-histidine-kinase	gnl\|CDD\|340391	cd00075, HATPase, Histidine kinase-like ATPase domain. This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.	1.17988e-12
NZ_CP050974.1\|WP_168490156.1\|2919807_2920245_-\|DUF742-domain-containing-protein	gnl\|CDD\|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	3.95073e-32
NZ_CP050974.1\|WP_168490151.1\|2914208_2914859_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.46034e-14

>NZ_CP050974.1|WP_168490158.1|2922553_2923180_-|TetR-family-transcriptional-regulator
MGSGGGRRVGRPRAAQRPDSGLSPRDELLDAAAELFTTRGYAATTTRAVAERAGMRQASMYHYVSGKEELLAELLESTVTPSLAFARELLADDATPPESRLWELCRTDVELLCGGPHNLGGLYLLPEVRAERFAGFHAVRAELKDTYRQLLAATAAGGALVKSELDLRTDLLFGLIEGVILVHRSDPERPVSAFAEATADAALRIAGI
>NZ_CP050974.1|WP_168490157.1|2920645_2922262_-|sensor-histidine-kinase
MVSVQSPPGGRELPYARVLLPPAILMAAVTGAAVALVTGPARAAVGWCGGIATLLVIAVAAEAVRRGRVIRAVRAELARRTAYLEQRIAAHDQDIVRFHHEVLPAAIRRMNRGMNPGTVALRFGVDDPSLPQISEVERDLLGTFLQLLDTEKLLLDSSHRSFVNIARRVQAIVHQQNKELREMEEDHGRNPEVFDDLLRIDHGTALIGRLADSIAVLGGGRPGRNWPKPVPLFSVMRGAMSRILEYRRIELHSIAEVNVNGIHVEPVIHAVAELLDNATRYSPPNSKVHLTALKVQTGVAIEIEDSGVSFSDEARGKMEELLRQAAAGTDLQVLGEAPRLGISVVGRLSKMYDMAIALRQSAYGGVRAVVVVPSNMLTKDPAASLAHGIGANSTATMDTDGVEGPNRKPKKRRPTTGPRLPEQGDGSREDDAPLVTEWTPNGLPQRRSRVKTPLRERYAEAARIAAEEEAAAEAAAAAPSWGTVPAAPKKQEKEKEQEKPPGHWVEAFWEGLKRDPDPNAFTGKNQPASEADDEGDLK
>NZ_CP050974.1|WP_101406123.1|2920241_2920649_-|roadblock/LC7-domain-containing-protein
MIHQRDNFDWMLRDLADGVPGIQQIVVLSADGLRIARYGGNPDAADRVAAACAGLQSLATAVASEVPSSDGTMKMVLIEIDGGYFYLMSAGANAYLAVLANQIAEPGLMSNRMSDLVARIGAHLTSPPRRNGQTV
>NZ_CP050974.1|WP_168490156.1|2919807_2920245_-|DUF742-domain-containing-protein
MTPPQRRRRYPKEEFTEPPQERPPQAGEEDGEEEDPKNPGRLYLLTGGGEAGERAELDLVTLIVARADAPTPTTQPEQSALLRLCQAPLSVAELSAYLNLPFSVVTVLLTELLAAELVQARAPIVRSALPDRSLLEAVMHGLQKL
>NZ_CP050974.1|WP_168490155.1|2919206_2919827_-|ATP-binding-protein
MDFKSSETITGPRAEDHLPHSAQAAVKIVIVGGFGVGKTTMVGAVSEIKPLTTEETMTQAGIGIDDNYGSETKTATTVAMDFGRISITEQLVLYLFGTPGQERFWFLWNGLFEGALGAVVLIDTRRLEVSFDVIGRLEERGVPFVVAINTFPDAPDYPIEELRTALDLPADIPIVQCDARRRASSRDVLMTLMHFLYSLTMSQARA
>NZ_CP050974.1|WP_168490154.1|2917634_2919104_-|cytochrome-P450
MTSESHFPAGTDDRTPTPPPGCPAHGLGPGGLHRLYGPEADDLGDLYEKLRQEHGAVAPVLLHNDVPIWVVLGHAENLHLVSSPTHFSRDSRLWTAVQDGTAGADHPLAPHIAWQPICSHAEGDEHLRLRGAVMGAMSTINHRTIRRHINRATQLLVNRFCEKGRADLVSQFAEHLPMAVLCEILGMPDEYDDRLVQATRDLLRGTETAIASNEYVMNILIRHTARRRAETFGDFTSVLINHPAQLTDDEVSQHLRLVLLAAYEATANLLANVLRVVLTDPRFRAQLNGGQMTVPQAVEQSLWDEPPFSAVLGYFAKQDTELGGRQIRRGDGLILGIAPGNIDPKVRPDLKANMMGNRAHLAFGGGPHECPGQDIGRAIADVGVEALLIRLPDVELEGDEDELRWRSSMSSRHLVELPVYFAPQAPQDVEEVPSINPVPRQRPSLEVTTDEPTAAPAPAPVAPPAPPATPEPVHRLGAWQRFLRWWRGY
>NZ_CP050974.1|WP_168490153.1|2916670_2917618_+|pseudouridylate-synthase
MRRRPRIPPSPLPQREGVDPVRVRLPRDGGWATVREHLVERLAAGAGVIDGMFGDGLIVGADGRPVAPDAAYEPGMFVWFHRELPDEEPVPFALDVVYRDEHIVVADKPHFLATTPRGGHVTETALARLRRELGLPTLGAAHRLDRLTAGLVLFTVRPEERGAYQTLFRDRLVRKEYEAVAPYDAGLALPRTLISRIVKERGVLAAREVAGEPNALTQVELTDQREGLGRYRLLPSTGQTHQLRVHMNALGVPILGDPLYPVVTGPVPAGDFRRPLQLLARVLEFTDPVTGRAHRFVSGRVLRAWSSYDDWAQGA
>NZ_CP050974.1|WP_168490152.1|2915083_2916634_+|amino-acid-permease
MTTTAPSDVRPDPPESSGDRSLAEFGYRQELHRSLGRYASFAAGFSFISVLTTVFQFFAFGYAFGGPVFFWTWPAVLVGQLTVAACFAELAARYPISGAIYQWSSRLSNLSFGWFAGWIMVIGQIVVVAAAALALQMVLPAIWSGFQLVGRDPAPTSPDGAANAAVLGVILLVLTTLVNVIDNRVMSMINRIGVTAEIIGAVLIIVLLLTHSERSPGITFHTGQGSTGLFGALMVGSFMAAYVMIGFDSAGEMSEETHDPRRTAPRTILTALGAAGLLGGLIVLGGLLAAPSLTDGRLGVDGLSYVLTSSLGDGVGRALLADVVVAIAVATLAIQTAACRMLFSMARDHQLPFSGRLSKVNPRTGMPSAPALVVGVLAAALLLLNFASPDAFLAIGTTCIVMLYLAYAMVTGPLLVRRLRGEFTADGTDERGAPLFSLGRWGVPVNAIALVYGLFMTVNLAWPRAAVYDPAGGHWYFQWFTVLFLGLTLVAGAAYRAYRARTPVAGTPEVVPASYA
>NZ_CP050974.1|WP_168490151.1|2914208_2914859_-|PadR-family-transcriptional-regulator
MATKRRKLSNPLALAVMVLLTEKPMHPYEIAQTLRRRGKDTSLKINYGSLYTVVQNLEKHGFVEVAEVQRQGNRPERTLYGITDAGRAEATEWLSDLLAVPAEEYPIFEAALSLMGVLHPDEVARLLGERLNMLEVRAASMRGGLEKLNETLPRLFLIESEFKLHMIEAEAEWVRGFLAEVTAGTFPGVKEWRSFSETGEVPEEYLKLETGEVERP
>NZ_CP050974.1|WP_168490150.1|2913000_2914017_-|ATP-binding-cassette-domain-containing-protein
MSSTRAPAVEARQLIKTYPGDVTALSGMDVTVETGTVFGLLGPNGAGKSTTVKILTTLARPDSGAASVAGHDVLRHPDRVRRAIGVVAQNSGADPVATGRENLQLQGRLYGLKGAGLNRRVDELLDRFKLADAARRPVKGYSGGMRRRLDVALGLVHRPEVLFLDEPTTGLDPEARTAMWDEIARLAGDEGLTILLTTHYLEEADRLAERIAIVDRGRVVVEGTPDALKGELRGDAVHVELREALGDAGRTLLNGALTRLPGVREALFDGRRVSVRADDGAATMPALLGVLERAGVGVAAATVARPSLDDVYLRYAGRRYAEAEAEGAENLVLAGGVR
>NZ_CP050974.1|WP_168490159.1|2923509_2924334_+|DUF1989-domain-containing-protein
MATATTYGARAHARAQEGSRTEAMPVVPANAWPAPPCEAGHLVWAETVAAGNYTHRVLARGTELRLTDLRGDACAHLLLYAADRPWERLNVADTVKVQWNAYLGEGQLLLSDQGRVLASLVADTSGRHDTLCGTSTLVRNTQRYGDGTPQSASPAGRELFKLAAAKNGLEPRDLPPSLSFFQGVEVRDDGSLDFTGSAGPGGSVTLRAEQDVTVLIANVPHPTDPRTEYVSTPLEVLAWRAAATAPGDPLWEATPEGRRAFLNTAEFLAARGIA
>NZ_CP050974.1|WP_097283982.1|2924330_2924936_+|urea-carboxylase-associated-family-protein
MKTVVPARAAWSAVVRTGETLTVTDLHGNQAVDFLVYDAHDTTVRYSAPDTIHAQGNLFLTTGSVLMSNEHTPLMTVVADEVGRHDTVGGACSKESNTLRYGHHTWSQHACVDNFLAEGAKYGLGKRDLVSNINWYMNVPVEKDGTLGIVDGISAPGLTLTLRAECDVLVLVSNCPQINNPCNGFEPTAVEMTIEASGATG
>NZ_CP050974.1|WP_168490160.1|2924932_2928448_+|5-oxoprolinase/urea-amidolyase-family-protein
MTFDTLLVANRGEIAVRIIRTARELGLRTVAVYSDADRSAPHVRLADEAVRLGPAPAKESYLDADLVLKAAKDTGAGAIHPGYGFLSEDAAFARRCEDAGIVFVGPTPEQLELFGAKHTARAAAEAAGVPLAPGTGLLPGLTEALEAAARIGYPVMLKATGGGGGIGMSACRSADELTEAWERVQRVAAASFSSAGVFLERLVERARHVEVQVFGDGRGRVVTFGDRDCSLQRRNQKVLEEAPAPGLPSTVRAQLASCARDLCAAVGYRSAGTVEFVYDAAREEAYFLEVNTRLQVEHPVTEEIYGVDLVAWMLRLARGESDVVRDPGAPRGHAVEARVYAEDPSRDHRPSAGLLTRVEFPGGVRVDGWVETGTEVTTSYDPMLAKVIAYGQDRAHALQRLDEALARTRVDGIETNLGLVRAALADPSFRRATHSTATLARVTDPTRRIEVVSGGTLTTVQDWPGRTGYWQVGVPPCGPMDDLSFRLGNRALGNHEGAPGLECTLQGPTLRFTHATTVCVTGAPARVTVDGAAVAQWEPVTVPAGALLEVGSPTEHGLRTYVLFAGGGLDVPAFLGSAATFTLGRFGGHGGRTLRTGDVLHGGSATDHGAPVPVGDRPGFSSSWRVGALEGPHAAPEFFTEDDIHDFYAADWKVHFNSARTGVRLVGPKPRWARTDGGEAGLHPSNIHDTPYSVGAVDYTGDMPVLLGPDGPSLGGFVCPATVVSTERWKLGQFRPGDTVRFAPLADDGSQRPAIVDGGVLARDGDVTFRRSGDDNLLVEFGPLQLDLALRMRVHALMEAVTEAALDGVTDLTPGIRSLQIQTDPGRLPQHELLTTVREIARTLPPSDQLVVPSRTVHLPLSWDDPATREAIARYMAGVRDDAPWCPWNIEFIRRVNGLDSVDDVYRTVFDAEYLVLGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCVYGMEGPGGYQFVGRTTQVWSGWQQRGAFEPGSPWLLRFFDRIKWYAVEPDELLDLRADIISGRFVPRIEEGVFSLAEYQAFLADHSASIAEFRARQGTAFSAERDAWEAAGEFDRADAASAPAAPTAEVTVPAGGRLIEAEFAASVWQLNVKPGDRVTTGQPLLALEAMKMESRVPAPMDGVVQQVLTKPGAQVEAGTALLVLAPAS
>NZ_CP050974.1|WP_168490161.1|2928584_2930246_+|allophanate-hydrolase
MSAVTRVRLAYARIETVDRPEIWIDLRPQAQVEKEAQAIDARLAAGEHLPLAGKLLAAKGNIDVAGLKTTAGCPAYAYTPEVDAPAVARLRAAGALVLGTTNLDQFATGLVGTRSPHGAVRNALDPARISGGSSSGSAVAVALGIVDLALGTDTAGSGRVPAAFNGIVGLKPTRGLVPATGVVPACASLDCVTVFARTLPEAEQALAYLASPSGRELPALPQRAPGPWRVAVPPTTQLGELDEGWAEAYEAAVGLLVEAGAEVRTLDLTPFTEAAAMLYEGAFVAERYTAVGSFVDKLISEGGEGLDPTVAGIITRARDIPAHQLFADQDRLAALRTRALAELGDADALLLPTAPGHPTLAEVAADPLGANARLGRFTNSTNLFDLAAVAVPAGLTPAALPFGVMLIGPAFTDERLARIAALLQPELRIAVVGAHLSGQPLNPQLLSLGAEWERTTTTAPAYRLHALSTTPPKPGLVHVGESGGAGIEAEVWRLPAAGLGRLLADLPRPMALGRVELADGTHVPGFLCEPAAREGAEDITECGGWRGYLRTRA
>NZ_CP050974.1|WP_168490162.1|2930417_2931344_+|hypothetical-protein
MQSRTTRIAHLLVTLAFLTAGAGAVTGYGSERAAGSGVQAPGTGQESRAESRARQVADAWDGSEAARQWRKGYYPMADAVQLPEGGLRGEADKRAFTTQNFVLRGALPALPRKDGEVRWKSGASLTLPLMAAGKAYERVARGGNDGPHLTVTGAKPGEMTLATSRGPATVPAWLFTLEGYDTPLKRAAVGPSKLPESPIRPSRDVPAGTPTPLDRLVAVAGDGRTLTVLADHGSCDSGPAVHVLETRTGVVLSASVLGARKGPCTGERIRARVTVKLTRPIGDRILLDAHTGRPVPHEGPHEPSPSWS
>NZ_CP050974.1|WP_168490163.1|2931427_2934289_-|DEAD/DEAH-box-helicase
MIVMLSVAAGSLESTMTEDLSPAERYAAARKRAVEQATALASFREMYDFGLDPYQIEACQALEAGKGVLVAAPTGSGKTVVGEFAVHLALQQGKKCFYTTPIKALSNQKYADLCRRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLYAGSQTLLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGHTEVIVSEHRPVPLFQHVLAGRRMYDLFEEGEGNKKAVNPDLTRLARMEASRPSFQDRRRGRAMREADRERERRQRSRIWTPGRPEVIERLDAEGLLPAITFIFSRAACEAAVQQCLYAGLRLNDEEARAKVREIVEERTASIPSEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGFSPDHLAGLAGTRTYPLRSSFKPSYNMAVNLVEQFGRHRSRELLETSFAQFQADKSVVGISRQVQRNEEGLEGYKESMTCHLGDFDEYARLRRELKDRETELAKQGAAQRRAEAAVALEKLKPGDIIHVPTGKFAGLALVLDPGLPAGRSNGHRGFEHHDGPRPLVLTAERQVKRLASMDFPVPVEALERMRIPKSFNPRSPQSRRDLASALRTKAGHIVPDRLRKRRSEAADDREIARLRTAIRAHPCHGCNDREDHARWAERYHRLLRDTKQLENRIEGRTNTIARTFDRIVALLTELDYLRGDEATEHGRRLARLYGELDLLASECLRAGVWEGLDPAELAACVSALVYESRVGDDAMAPKLPSGKAKAALGEMVRIWGRLDALEEDFRITQSEGVGQREPDLGFAWAAYEWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLGQISAAAPVAGGERSTVAKNARKAVDGLLRGVVAYSSVG
>NZ_CP050974.1|WP_168490164.1|2934329_2935220_-|diacylglycerol-kinase
MTSEITLFVNPTAGRGRGAHAAQPAAFALRAAGFSVRTVLGENAEDALTRAREAVEGGTGALIAVGGDGMANLALQAVAGTRTPLGLVAAGTGNDFARALGLPVRDPAAAGRLIAESLKGARLRDIDLGRVNGTWFATVLASGFDSRVNDRGNRMRWPVGRFKYDLAMLAELAALRPLPYRITLDDGEVREIRATLVAVGNGSSYGGGMRICAGADLEDGLFDVTVVGECSRTTLLKVFPKVYRGTHLDHPVVTAHRATKVELVAEGVTAYADGEPLGPLPLTAECVPAAVRVAIP
>NZ_CP050974.1|WP_168490165.1|2935251_2936202_-|twin-arginine-translocase-subunit-TatC
MLKSARKKEKDPEGRMPLADHLRELRNRLAKAMLAIVIVTVVAAFYYNDIINFFTKPVLDSVGCPSSFAELAKTPKGHQQCAQITINGLLAPFTLALKVSLMAGVALASPVWLYQLWAFVAPGLHQNEKKYAYAFVGTGVPLFFAGGFFAYKVLPTTAKVLIDFTPDGVNNLLPLDDLLDLVTRMVVVFGLSFELPLLLVMLNLTGILTGKRMLGWWRAMIMGITVFAAVATPSTDPLTMLALAVPIWVLYFGAVVFSLTNDRRKQRREAEGPADDEASDLDLTPDDIGEVESVSARRALPEQSGTDRVNGYDDVT
>NZ_CP050974.1|WP_168490166.1|2936249_2936534_-|Sec-independent-protein-translocase-subunit-TatA
MFGRLGAPEIILILVVIILLFGAKKLPDMARSLGKSARILKSEAKAMKDEGSTPAPAGPPSTDEQAPAQRTIQAAPGDVTSSRPVTEPTDTTKR
>NZ_CP050974.1|WP_168490167.1|2936792_2936987_-|hypothetical-protein
MFWPMFAIVVGFLGIAVLGVLAVRVFVEAERLGRQVTDSARRINQAADDLERAAAGVARSVDAV

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Crispr_ID: NZ_CP050974_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_3

3131019-3131119

Orphan

Consensus_repeat	Method
GTTGTCGGCTGCGGGTCGTGTGTGGCTG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP050974_3

>merge|NZ_CP050974|3|3131019-3131119|CRISPRCasFinder
GTTGTCGGCTGCGGGTCGTGTGTGGCTGGTCGCGCAGTTCCCCGCGCCCCTGGAAGAAGGGGGCTGCGCGTGTGTTGTCGGCTGCGGGTCGTATGTGGCTG

>NZ_CP050974|3|3|3131019-3131119|CRISPRCasFinder
GTTGTCGGCTGCGGGTCGTGTGTGGCTG	GTCGCGCAGTTCCCCGCGCCCCTGGAAGAAGGGGGCTGCGCGTGT
GTTGTCGGCTGCGGGTCGTATGTGGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_054234458.1\|3135898_3136261_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|377905
NZ_CP050974.1\|WP_168500936.1\|3128379_3128811_-\|transglycosylase-family-protein	unknown	unknown	gnl\|CDD\|369056
NZ_CP050974.1\|WP_168490292.1\|3122581_3123886_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380564
NZ_CP050974.1\|WP_168490299.1\|3133256_3133970_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP050974.1\|WP_168490294.1\|3124566_3125061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490302.1\|3137423_3138008_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490298.1\|3131694_3133179_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|179525
NZ_CP050974.1\|WP_168490301.1\|3134816_3135902_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP050974.1\|WP_168490290.1\|3118935_3120630_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238832
NZ_CP050974.1\|WP_168490297.1\|3131223_3131631_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490300.1\|3133927_3134623_-\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP050974.1\|WP_168500935.1\|3121616_3122393_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490304.1\|3138458_3139241_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|313370
NZ_CP050974.1\|WP_168490296.1\|3128953_3129670_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|369056
NZ_CP050974.1\|WP_168490303.1\|3138004_3138436_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239550
NZ_CP050974.1\|WP_099923453.1\|3130209_3130983_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490291.1\|3120511_3121549_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP050974.1\|WP_168490293.1\|3123892_3124435_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490295.1\|3127726_3128383_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213191
NZ_CP050974.1\|WP_168500937.1\|3136678_3137347_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368847

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168500937.1\|3136678_3137347_+\|hypothetical-protein	gnl\|CDD\|368847	pfam06333, Med13_C, Mediator complex subunit 13 C-terminal. Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med13 is part of the ancillary kinase module, together with Med12, CDK8 and CycC, which in yeast is implicated in transcriptional repression, though most of this activity is likely attributable to the CDK8 kinase. The large Med12 and Med13 proteins are required for specific developmental processes in Drosophila, zebrafish, and Caenorhabditis elegans but their biochemical functions are not understood.	0.00293914
NZ_CP050974.1\|WP_168500936.1\|3128379_3128811_-\|transglycosylase-family-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	6.63055e-32
NZ_CP050974.1\|WP_168490292.1\|3122581_3123886_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380564	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.	3.8534e-58
NZ_CP050974.1\|WP_168490299.1\|3133256_3133970_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.36707e-35
NZ_CP050974.1\|WP_168490298.1\|3131694_3133179_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|179525	PRK03003, PRK03003, GTP-binding protein Der; Reviewed.	0
NZ_CP050974.1\|WP_168490301.1\|3134816_3135902_-\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	4.04424e-135
NZ_CP050974.1\|WP_168490290.1\|3118935_3120630_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238832	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.	0
NZ_CP050974.1\|WP_168490300.1\|3133927_3134623_-\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	2.7227e-97
NZ_CP050974.1\|WP_168490304.1\|3138458_3139241_+\|nucleotidyltransferase	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	9.14363e-37
NZ_CP050974.1\|WP_168490296.1\|3128953_3129670_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	4.74986e-31
NZ_CP050974.1\|WP_168490303.1\|3138004_3138436_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	1.63314e-29
NZ_CP050974.1\|WP_054234458.1\|3135898_3136261_-\|chorismate-mutase	gnl\|CDD\|377905	pfam07736, CM_1, Chorismate mutase type I. Chorismate mutase EC:5.4.99.5 catalyzes the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine.	9.24532e-57
NZ_CP050974.1\|WP_168490291.1\|3120511_3121549_-\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	9.30612e-58
NZ_CP050974.1\|WP_168490295.1\|3127726_3128383_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	6.04886e-60

>NZ_CP050974.1|WP_099923453.1|3130209_3130983_+|hypothetical-protein
MPRMLDVSDDVRAEIGDEEADRLLAGENAPGSYDCTSCRTPGDSEQERTSTVLFIGDETAVLAFAHATCLPSQVVQVTEEQLQGAVRSINPDGVPAQAAPEQAVLGVTSGLILISGELHPALVVEPTGPIVRPGSTDIGDDFLPLLIEQGFMPVTELSSVPPVLHGWSVLLAMGQLHAVLQPGTGGGSPVAWWQAHQALQVAESWRAAANKHQQVLLFAAPVGSIGRQPREDLLRDALDKAAANGKLVAAAMPLAGT
>NZ_CP050974.1|WP_168490296.1|3128953_3129670_-|LysM-peptidoglycan-binding-domain-containing-protein
MSACADNTRKVRTTRTTAVLAGAALLAPLGLLAATGNAAAADSGVWDRIAKCESGGNWHINTGNGYYGGLQFSAGTWRAYGGSAYASTADKASKAAQIAVATKVQNAQGWGAWPTCSARAGAYGDAPASSGAASSGGSATTKSAPKAAPRSTSKSASKSAPTESTTKSAPAQASEAPARASGHTNRAASRGDYTVRGGDTLSGIAERHGTTWRKIYAANRAVIGGDPDLIMPGQRLDL
>NZ_CP050974.1|WP_168500936.1|3128379_3128811_-|transglycosylase-family-protein
MRYVAATVVAATLAVLVPERAAVASPSPLSPLSPFSGRPAGRVSYNCARDHWPWGCLAKCESGGRWHANTGNHHYGGLQFRQATWVAFGGLAYAPRADLARRKEQIKVAKRVVHTQGWGAWPVCAKRYKLRNHTRVMNPGRTF
>NZ_CP050974.1|WP_168490295.1|3127726_3128383_+|ATP-binding-cassette-domain-containing-protein
MNISLRHARVRYGPLEALHGVTLVAPGPGLTVLLGRNGSGRTTALRALAGTVPLSDGTVLWDGVDVTRLAAFERARRGLCLVPERRAVFGSLTVREHLVLAAPDFTPVLDAYPQLEPLLPRRAGTLSGGEQRMLALSRALLARARVVLVDEPAQGMSPAVAARTYELLGGLDACVVVAEQRLPPGLRERTGRTTYVHELSRGSVAFSGEAAEVRRRET
>NZ_CP050974.1|WP_168490294.1|3124566_3125061_+|hypothetical-protein
MRTPRLRTVHPVLWAGCAALAAGAVLCVIGWYGVSGERYAERQLPYLASCTIPGAALIVAGAVLLTHGRNALAAARVEELYGLLVATEPADPERSEQAAVAPLAVSGELLMVPGGTLWHRADCPLVAGKPAAVPVDSRVLASGELGPCPICEPPAAERAPAPER
>NZ_CP050974.1|WP_168490293.1|3123892_3124435_-|hypothetical-protein
MVLGSDLRRDNGRGVAALVVLVLAGALTACGDSSGGGSSTPPPAPTVERPSSASPSPTGPDDPAAAENQVRRNWEKFFSPSVPVKDKLNYLENGDRMAAVVQGFSGDKRGQQVAAQVQKVVFTAPAEAEVTYALTLKGATALPNASGTAVYENGTWKVSDNTLCALVALSGDGSATPAGC
>NZ_CP050974.1|WP_168490292.1|3122581_3123886_-|ABC-transporter-substrate-binding-protein
MRPKGVAEGVLAAGLPLLLGTALVLGTAACGSRLPESDFEHRTTPAPQGTAPLRVGIVTSATSPVGGSAFTGPRDGAKAYFDRLNARGGIGGRPVEVRTCDDGGSGVGDNECVHRLIDEDKVVALVATTALDYAGASRVSAAGVPDIGGQPIGAAYDTYPHLYGIYGSLAPREGTPGWGGKLYGGTEVYRYFKRVHGARTAAVISYNQSASAAYARLVTRGLKAEGYQVVTEQVDFALPNFRAAAADLKDQGADLVFDALDTHGNAQLCKAMDDVGAKVIAKVTNVQNWTSTVPEDYKDAPRCRNALWVTGSSRNYEDTSDAAVRAFRGATKGLPTHSQWQLEGWAAAMWFTDAAKSCAKTGVTRACVDRFMDRGAPYTADGLLIPVSSERLPTPPKTRRTCVSVARWEDGRGWVSQGDMNSDCFDVPQLSYEP
>NZ_CP050974.1|WP_168500935.1|3121616_3122393_-|hypothetical-protein
MPPCADCIADSAGGLTFDVIETGEPGAALLVLRRREGHDEVSLPLTPTGDGRLRAALPSGVALPEGRWDAYAQVAGGEPRRLAPGANDLRSLVARVPSGSLGHVAVRIPYATRHGNLSVRSWLRAPHAEAVELYRGERGLGVRGRVYGIPLAPDAHAEVCHRDTAGPLIRAEVAVEQVEFGFTVAYGALRPGVWDLWLRPAGEGGPRVRIARLLDDIADKRPFLIHPRVPVKTLYGPVEAGPYYTRDNDLSVTVTAVG
>NZ_CP050974.1|WP_168490291.1|3120511_3121549_-|WYL-domain-containing-protein
MLETSARLLRLLSLLQAHREWSGADLAGRLGVTPRTIRRDVDRLRELGYPVNASPGTGGGYQLGAGAELPPLLLDDDEAVAVAVGLRTAAGQGIEGIGETSVRALAKLEQVLPSRLRRRVSALNAFTVPMLRGPQPSAVDPGVLTELANACRDGERLRFEYRDHGGSPTRRTVEPHRLVCTEHRWYLVAWDVDRGDWRTFRADRITPRPPHGPRFTPRTPPAEDLAAYVSKGVSTRAYASRAVVRLFVPLEEAAERISPSAGTLEASGEDSCVLRTGAASLDVMVIHVMLMGFEFEVLEPAELTEAIRTARDRLSRALERPPERSPRTGDGAGRTPGSRSGSGAA
>NZ_CP050974.1|WP_168490290.1|3118935_3120630_+|cytochrome-c-oxidase-subunit-I
MGTDTAQATARPVHRRQRPGRLAVDWLTTTDHKKIGHLYLITSFAFFLIGGLMALVMRAELARPGLQIVDNNQFNQLFTLHGTIMLLLFATPTFAGFANEIMPLQIGSPDVAFPRLNMLSYWFFLFGGLIVLGSLMVPDGPASFGWFAYAPLNSLERSPNIGADMWIMGLALTGFGTILGAVNFITTIVGMRAPGMTMFRLPIFTWNILFTSILVLFAFPVLAAALLVLEADRRFGSVVFEAANGGALLWQHLFWFFGHPEVYIIALPFFGIITEILPVFSRKPVFGYLTLVAATMAITGLSIVVWAHHMFATGAVLLPYFSFMSFMIAVPTGVKFFNWSGTMIKGSLSFETPMLWAIGFLVSFLFGGLTGVILASPPMDFEVTDSYFVVAHFHYVVFGTVVFATFGGFYFWWPKFTGKMLDERLGKIHFWTLFVGFHTTFLVQHWLGAEGMPRRYADYLAADGFTALNTVSTIGAFLLGMSTLPFLYNVWKTSRYGTKVEVDDPWGFGRSLEWATSCPPPRHNFVTLPRIRSESPAFDLHHPQYGAIAQEAAPAPGTAGPGPS
>NZ_CP050974.1|WP_168490297.1|3131223_3131631_+|hypothetical-protein
MHTYDAPRRQPFQQIPAARSAQDPPRGPSATPIYDALYAEWVRSFKALPGDRHGEDQLGFTAFGILTQGSSAYGGSSYPSSYSSYSAGAYSARNGGSQQGQGASTTGVWQPVARQHGTGLHHIPAALPPAPRRGL
>NZ_CP050974.1|WP_168490298.1|3131694_3133179_-|ribosome-biogenesis-GTPase-Der
MNDHIQPDGSAGPAEHEHGALGDAEYAEFMELAAEEGFDIEDVEGAIEEAGHGPLPVLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDVLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADASYLWSLGLGEPHPVSALHGRGTGDMLDAVLEALPEAPAQTFGVAVGGPRRIALIGRPNVGKSSLLNKVANEDRVVVNEIAGTTRDPVDELIELGGVTWKFVDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILIDASETISVQDQRIVTMAVEAGRAIVLAFNKWDTLDEERRYYLEREIETELLQVAWAPRVNVSARTGRHMEKLVPAIEAALDGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILFGTQAGTKPPRFVLFASGFIEHGYRRFIERRLREEFGFEGTPIHISVRVREKRGTKKK
>NZ_CP050974.1|WP_168490299.1|3133256_3133970_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MRRHPRRGEAGRQVTATSERGAEVGRRIGVGLMYGLWKPRVLGAWKVPATGPAILAVNHSHNIDGPMVMGVAPRPTHFLIKKEAFIGPLDPFLLAIGQLKVDRETTDRTAITDALGVLSSGGVLGIFPEGTRGDGDFASLRAGLAYFAVRSGAPVVPVAVLGSSEKSSRLTKALPPLRSRVDVVFGDPFEAGDGSGRRTRKALDEATARIQKQLSAHLDHARRLTGRPENAGRPTGH
>NZ_CP050974.1|WP_168490300.1|3133927_3134623_-|(d)CMP-kinase
MENGAARPAPAVIVAIDGPSGTGKSSTSKAVAAQLGLSYLDTGAQYRAITWWMVTNGIDITDPTAIAAVAGKPEIISGTDPSAPAITVDGTDVAGPIRTQEVTSKVSAVSAVPEVRAHITELQRSIAAAAELGIVVEGRDIGTTVLPDADLKIFLTASPEARASRRSGELKGADVNSTREALLKRDAADSSRKTSPLAKADDAVEVDTSDLTLQQVIECVVTLVEEKRAAK
>NZ_CP050974.1|WP_168490301.1|3134816_3135902_-|prephenate-dehydrogenase
MRTALVIGTGLIGTSAALALSQRGVVVHLTDHDPEQARTAAALGAGTDEAPGGPVDLAIVAAPPAHVAATLADAMRRGVARGYLDVASVKGGPRRELEALGLDLSAYIGSHPMSGREKSGPLAATGDLFEGRPWVLTPTRDTDTEVLNLALELVSHCRAVPVVMDADAHDRAVALVSHMPHLVSSMVAARLENAEEAAVRLCGQGIRDVTRIAASDPRMWIDILSANPGPVADLLTDVSADLDETVQALRALQSSDDAKRREGVSGIEDVLRRGNAGQVRVPGKHGAAPLTYETVAVLIDDQPGQLARIFADAGAAGVNIEDVRIEHATGQQAGLVQLMVEPKAAPVLSTALRERGWALRQ
>NZ_CP050974.1|WP_054234458.1|3135898_3136261_-|chorismate-mutase
MAVRAVRGAVQLERDEAGHMDEQVSELLTAVLERNGLTTDDLISIWFTATPDLHSDFPAAAARKLGIVDVPLICAQELDIEGAMPRVVRVLAHIESDKPRADIAHVYLGAAGALRKDIAQ
>NZ_CP050974.1|WP_168500937.1|3136678_3137347_+|hypothetical-protein
MKRPGPLLTLLAGLLLAVFMLTLNATAGTKNASSSYQEASPSATPQASPPPTSTSPPSSPPPPSRSAPPNADYAGRTDDDSSAVSVSLRGGKAIAYFCDGRSKESWLKGDVKDDGTMKLTGKHGAELNGTLKDGRSIRGTVDLGGQRYAFTADKAVKPSGLYRATATVRGAKLDGGWIVLPGGKQVGILDRDGKPAAAPTIDPETGTVTVDGQTLTASPVTP
>NZ_CP050974.1|WP_168490302.1|3137423_3138008_+|hypothetical-protein
MTVDPNAATQGFPSPPPAHRRPGAARYLVPALVAAAVAVGLGAYGKSHHPAGTAFNLAGFSSTGAVKSWLATTAFAFALVQLVSAFMVYGKLPGPSWAPTLHRWSGRIAFLVAVPVAVHCLYALGYQTYEPRVMWHSLLGCFFFGAFSAKMLLLRSERLPGWLLPMVGGLVFVVLTAIWLTSALWFFRTFGVTT
>NZ_CP050974.1|WP_168490303.1|3138004_3138436_+|Rieske-2Fe-2S-domain-containing-protein
MTNPPARRTVLGTGAAFLLAGCSKYGDSNSSSASSPTATTSPIAKPSAGKELAEKSDIPVGGGKVFKEEKVVVTQPKKGEFKAFSAICTHQGCTVNKVADGTIDCPCHGSKYRITDASVVHGPAPRPLPAKKITVKGKSIFLV
>NZ_CP050974.1|WP_168490304.1|3138458_3139241_+|nucleotidyltransferase
MHAETQVSLVRDHTIYSCVMGSRAFGLATDGSDTDRRGVFLAPTPLFWRFEKPPTHVEGPAEEQFSWELERFCTLALRANPNILECLHSPLVEYVDDTGRELLALREAFLSRRAHDTFARYALGQRKKLDADVRQHGAPRWKHAMHLLRLLMSSRDLLRTGALTIDVGLRREALLAVKRGEVPWPEVEAWMTRLAAEADDAAAHSPLPAEPDHARVEDFLLRTRRASALRADCDAPRTLQPDPDDERVQGVVRGRGVRQR

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Crispr_ID: NZ_CP050974_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_4

3170293-3170391

Orphan

Consensus_repeat	Method
GGCCTCGACGATGTCGTCCTCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_4

>merge|NZ_CP050974|4|3170293-3170391|CRISPRCasFinder
GGCCTCGACGATGTCGTCCTCGCCGTCGTCCTCGGTCTCGACCTCGGCGTCGGTGTCTGCCTCCGCGTCCGCCGGGGCCTCGACGATGTCGTCCTCGTC

>NZ_CP050974|4|4|3170293-3170391|CRISPRCasFinder
GGCCTCGACGATGTCGTCCTCGCC	GTCGTCCTCGGTCTCGACCTCGGCGTCGGTGTCTGCCTCCGCGTCCGCCGG
GGCCTCGACGATGTCGTCCTCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168490312.1\|3164024_3164336_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490314.1\|3164709_3165591_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP050974.1\|WP_168490316.1\|3166627_3167671_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|182464
NZ_CP050974.1\|WP_168490323.1\|3182539_3182974_-\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|224501
NZ_CP050974.1\|WP_054232214.1\|3185026_3185272_-\|chaplin	unknown	unknown	gnl\|CDD\|367652
NZ_CP050974.1\|WP_168490322.1\|3180861_3181368_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NZ_CP050974.1\|WP_168490311.1\|3163201_3164017_-\|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP050974.1\|WP_168490315.1\|3165587_3166631_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|227119
NZ_CP050974.1\|WP_168490320.1\|3178477_3179119_-\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|376746
NZ_CP050974.1\|WP_168490318.1\|3168850_3170143_+\|DUF1015-family-protein	unknown	unknown	gnl\|CDD\|377633
NZ_CP050974.1\|WP_168490324.1\|3183098_3183890_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP050974.1\|WP_168500940.1\|3160442_3162161_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP050974.1\|WP_168490313.1\|3164378_3164726_+\|sterol-binding-protein	unknown	unknown	gnl\|CDD\|379708
NZ_CP050974.1\|WP_054232215.1\|3185431_3186073_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP050974.1\|WP_168490317.1\|3167749_3168778_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319832
NZ_CP050974.1\|WP_168490325.1\|3184011_3184800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168490321.1\|3180169_3180703_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|182339
NZ_CP050974.1\|WP_054230566.1\|3179344_3180130_+\|sporulation-protein	unknown	unknown	gnl\|CDD\|369195
NZ_CP050974.1\|WP_054230569.1\|3181472_3182408_-\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_CP050974.1\|WP_067364895.1\|3162299_3163205_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|235121

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168490315.1\|3165587_3166631_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	2.18463e-107
NZ_CP050974.1\|WP_168490314.1\|3164709_3165591_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	6.98974e-136
NZ_CP050974.1\|WP_168490316.1\|3166627_3167671_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	2.56367e-93
NZ_CP050974.1\|WP_168490323.1\|3182539_3182974_-\|NfeD-family-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	5.21365e-16
NZ_CP050974.1\|WP_054232214.1\|3185026_3185272_-\|chaplin	gnl\|CDD\|367652	pfam03777, DUF320, Small secreted domain (DUF320). Small domain found in a family of secreted streptomyces proteins. It occurs singly or as a pair. Many of the domains have two cysteines that may form a disulphide bridge.	7.27134e-16
NZ_CP050974.1\|WP_168490322.1\|3180861_3181368_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	4.68574e-17
NZ_CP050974.1\|WP_168490311.1\|3163201_3164017_-\|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	1.0038e-103
NZ_CP050974.1\|WP_168490318.1\|3168850_3170143_+\|DUF1015-family-protein	gnl\|CDD\|377633	pfam06245, DUF1015, Protein of unknown function (DUF1015). Family of proteins with unknown function found in archaea and bacteria.	2.14555e-126
NZ_CP050974.1\|WP_168490320.1\|3178477_3179119_-\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|376746	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG). Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.	6.58981e-88
NZ_CP050974.1\|WP_168490324.1\|3183098_3183890_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	5.5405e-93
NZ_CP050974.1\|WP_168500940.1\|3160442_3162161_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	2.42395e-180
NZ_CP050974.1\|WP_168490313.1\|3164378_3164726_+\|sterol-binding-protein	gnl\|CDD\|379708	pfam14864, Alkyl_sulf_C, Alkyl sulfatase C-terminal. This domain is found at the C-terminus of alkyl sulfatases. Together with the N-terminal catalytic domain, this domain forms a hydrophobic chute and may recruit hydrophobic substrates.	6.39054e-05
NZ_CP050974.1\|WP_054232215.1\|3185431_3186073_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.23812e-81
NZ_CP050974.1\|WP_168490317.1\|3167749_3168778_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.61418e-100
NZ_CP050974.1\|WP_168490321.1\|3180169_3180703_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	4.9874e-61
NZ_CP050974.1\|WP_054230566.1\|3179344_3180130_+\|sporulation-protein	gnl\|CDD\|369195	pfam07070, Spo0M, SpoOM protein. This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH.	6.301e-107
NZ_CP050974.1\|WP_054230569.1\|3181472_3182408_-\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	2.56918e-67
NZ_CP050974.1\|WP_067364895.1\|3162299_3163205_-\|NAD-kinase	gnl\|CDD\|235121	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	1.03836e-172

>NZ_CP050974.1|WP_168490318.1|3168850_3170143_+|DUF1015-family-protein
MNYAGPAEETPARSGLELTPFRGLRYDPDRVGSLAAVTSPPYDVIVRPDGLLHLESADPHNIVRLILPQDTTPTARNRQAADTLHDWVSEGVLAADPEPGLYVYEQHDDGMLQRGIIGALRLSEPSAGVVLPHEDVMPHIIADRAALMRATSANLEPLLLTYRGNGSRVGTAAVIERAAEGDPLLSTTTEDGFSHRLWAITDPADLAEIQTDLGRHQALIADGHHRWATYLRLRAEHPSPSPWDYGLVLLVDTARYPLRVRAIHRLLHNLPVAEALSALTDSFRVRHLDVPLPEALEALAAAAAEGNAFLLAGDGSFHLVDRPSPDLLARTVPADRPEAWRTLDATVLHATLLAHIWDIPEDSPAQIAYIHDTAATVDKAERDGGTAVLMHPVREEVVRDLARQGVTMPRKSTSFGPKPASGLVLRALPL
>NZ_CP050974.1|WP_168490317.1|3167749_3168778_-|HAD-hydrolase-like-protein
MSQTARTRPEASEQALSEAYDTALLDLDGVVYAGGNAIAHAVASLGTARSGGLHLAYVTNNALRTPDAVAEHLSELGIPTGADDVITSAQAVARLISEQVPAGARVLVIGGEGLRVALRERGLEPVESADDDPAAVVQGFGGPDLPWGRFAEASYAVARGVPWFASNTDLTIPSARGIAPGNGAAVEVVRIATGAEPQVAGKPLPPMHRETILRTGAKRPLVVGDRLDTDIEGAFNGEVDSLLVLTGVTDGAQLLAAPPQHRPTYVDADLRGLLTGQPEVVEEGDGFCCGGWTARAGSDGLELAGDGEALDGLRALCAAAWTAAGDGTCELDGGKALARLGL
>NZ_CP050974.1|WP_168490316.1|3166627_3167671_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MLVDGPPEQRAETAPAPPSRQAIRAVGLLASLALLVLVALASIAIGAKALPLDQVWHGLFHGTGTYSDVVVDDRISRTVLGLLVGAALGLSGAVLQALTRNPLADPGLLGINAGASAAVVTAITYFGVTSLSGYVWFAFFGAAGVGALVWFLGGSRGATPVRLALAGTAISAALYGYLQAVMITDDAALGKMRFWTVGSLASATDSTIKQVLPFLVVGTVVALALARPLNAMAMGDDTARALGANLNRTRALSMAAATVLCGAATAACGPIVFVGLMVPHVVRSFTGPDLRWILPYATVLSPVLLLGADVVGRMVARPAELQVGIVTAVLGGPVFIYLVRRRRTAQL
>NZ_CP050974.1|WP_168490315.1|3165587_3166631_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTTTRTRAVRTRGGLSVRLDVRAFTVVVLLLMAALAASVVLIGTGDFPIPAADVLKTLVGNGSAGQEFIVNDLRLPRVLVGLLVGASLGLGGALFQSISRNPLGSPDVLGLGQGSTAGALIMIVLFSGSANQVALGALVGGLLTGLAIYLLAWKRGVHGYRLVLVGIGVSAIVTAVNGYLLTKADIVDAARAVVWMTGSLNGRDWAQVWPLLVLCAVLVPLVLANTRGLRMMEMGDDVSYALGVRVERVRLLLMLAAVLLTAGATAAAGPVGFVALTAPQLARRLTRSPGPNLVPSMCMGATLLIVADWASQRAFGADQLPVGVVTGVLGGIYLLWLLVTERKAGRI
>NZ_CP050974.1|WP_168490314.1|3164709_3165591_-|ATP-binding-cassette-domain-containing-protein
MSAAANKSTQANKNTRRSTVNRLSADNVTLGYDQRVIAEKLSVEIPDHSFTVIVGPNACGKSTLLRALSRMLKPSEGRVLLDGQVIQSMPAKKVARTLGLLPQSSIAPDGITVGDLVGRGRYPHQGLLRQWSTEDERVVQESMASTGVAELADRYVDELSGGQRQRVWIAMALAQQTPLLLLDEPTTYLDIQHQIDVLDLCAELHEEQGRTLVAVLHDLNHAARYATHLIALREGRVIAEGAPNDVVTAELVEEVFGLRCQVIDDPETGTPLVVPAARKARVKVAAGAAKEAS
>NZ_CP050974.1|WP_168490313.1|3164378_3164726_+|sterol-binding-protein
MATIEECRSALDKLSDNMAGADGKVREAAALDRSLSCHITDLDITFVGRLKDGRIEVLDTLQGPPREKAQIRLAMAGDDLVAMVGGELNFAKAWGSGRVRLEAALLDLFRLRKLL
>NZ_CP050974.1|WP_168490312.1|3164024_3164336_-|hypothetical-protein
MNESVPEAGTPQSPMPEPEVPVEVEPELEYDPAAPAPLDVDRTPTGNAEVDAQLDRLGDADHLATDGHVEVYEDVHRGLRDALTALDARPGPPVPPTPYDRRS
>NZ_CP050974.1|WP_168490311.1|3163201_3164017_-|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase
MAGVARRRLDAELVRRKLARSREHASQLIAAGRVSVGKTLATKPATQVETAAAIVVTQDDSDPDYVSRGGHKLAGALAAFVPRGLKVEGRRALDAGASTGGFTDVLLRAGASHVVAVDVGYGQLAWSLQSDERVTVKDRTNVRELTLEAIDGEPVDLVVGDLSFIPLGLVLPALVRCAAPDADLVMMVKPQFEVGKERLGSGGVVRSPELRAEAVRGVARRAAELGLGVKGVTASPLPGPSGNVEYFLWLRAGAPELDPADVDRAVAEGPR
>NZ_CP050974.1|WP_067364895.1|3162299_3163205_-|NAD-kinase
MTETRARTVFLLAHTGRPAAIRSAELVVQGLLRSGIGVRVLEAEAADLPLPPEVELVKEATPQCLDGCELLIVLGGDGTLLRGAEFARASGVPMLGVNLGSVGFLAEAERDDLDKVVDRVVTKAYEVEERMTVDVVVHQNGDIVHTDWALNEAAVQKVSAEKLLEVILEIDGRPVTGFGCDGIVCATPTGSTAYAFSAGGPVVWPEVEALLMVPISAHALFAKPMVTSPNSVLAVEVLPHIPPGVLWCDGRRTVELPPGARVEVRRGAVPVRLARLHHASFTDRLVAKFALPVSGWRGAPH
>NZ_CP050974.1|WP_168500940.1|3160442_3162161_-|DNA-repair-protein-RecN
MRIRSLGVIDDAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGRADPALVRIGAKNAVVEGRITVPTGGTAIVRAEEAGAELDDGALLISRTVSAEGRSRAHLGGRSVPVGVLAELADELVAVHGQTDQQGLLKLSRQRQALDRYAGDAVAVPLAKYAGAYRRLRAISAELDEITTRARERAQEADLLRFGLDEIAAVEPRAGEDAELSAEAERLGHAEALASAATAAHAALAGNPEDPEGIDAATLVAGAHRALEAVRSHDAALAGLSGRIGEINILLRDVAGELAGYADDLDADPLRLAAVEERRAALTQLTRKYGEDIDAVLAWAEQGAARLLELDGDDERIDELTGERDALRAELGGLAQALTDARTEAAERFAAAVTAELASLAMPHARVSFEIRQTDDPEGVELGGRTVAYGPAGVDEVELLLAPHPGAPPRPIAKGASGGELSRVMLAVEVVFAGTDPVPTYLFDEVDAGVGGKAAVEIGRRLAKLAKSAQVVVVTHLPQVAAFADRQLLVEKTNDGSVTRSGVKVLEGEERIRELSRMLAGQEDSETARAHAEELLATARGDV
>NZ_CP050974.1|WP_168490320.1|3178477_3179119_-|DNA-3-methyladenine-glycosylase
MIAAPDRTPITRDFFDRPVLEVTPDLLGRILVRTTPDGPIELRLTEVEAYDGPNDPGSHAYRGRTARNGVMFGPPGHVYVYFTYGMWFCMNLVCGPEGNPSGVLLRAGEITEGAELARKRRLSARSDKELAKGPARLATALGVDRALDGVDACAPEGSPLTLLTGTPVHSDQVRNGPRTGVAGDGGVHPWRFWVANDPTVSPYRAHTPRRRST
>NZ_CP050974.1|WP_054230566.1|3179344_3180130_+|sporulation-protein
MGFKRLLASLGAGGASVETVLTEVNVVPGGVVQGEVRIQGGSVNQAIEGLSVGLQAKVEVEGHDDQEYKQDIEFTKLRLGGAFELQAGAVHAVPFGLEIPWETPITTIDGQALRGMHIGVTTELEIARAVDSGDLDPINVHPLPAQQAILNAFIQLGFRFKNADMERGHIRGTRQKLPFYQEIEFFPPSQYRGLNQVELSFVADDHEMDVILEMDKKPGLFSEGSDSYRSFRVGLHDYQGTDWAAYLNQWLSEVGSKRSWF
>NZ_CP050974.1|WP_168490321.1|3180169_3180703_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MTELKRPPLPHDFHPPVATFTVISEDVEPGGVLKDAQVYAAGNTSPQLSWEGFPPETKSFAVTCFDPDAPTGSGFWHWVVFDIPASVTELPTGAGSGKFEGLPEGAVQVRNDYGSRDFGGAAPPAGDPAHRYVFTVYAVDQEKLGPDAEVSPAVVGFNLRFHTLARAQLMGEYASPA
>NZ_CP050974.1|WP_168490322.1|3180861_3181368_+|HNH-endonuclease
MRDTLVLNASFEPLSTVTLNRAVVLVLQDKAVVEQAHPELRMRGAALDIPVPRVIRLCRYVRVPFRRQAPWSRRGVLVRDQHRCAYCGRRATTVDHVVPRAQGGRDSWLNTVASCAEDNHRKADRTPEQAGMPLLRQPFEPTPADAMLLALGRDDLDALPEWLAQPAA
>NZ_CP050974.1|WP_054230569.1|3181472_3182408_-|SPFH/Band-7/PHB-domain-protein
MAPIIIVLIILVVLVFIALIKTIQVIPQASAAIVERFGRYTRTLNAGLNIVVPFIDSIRNRIDLREQVVPFPPQPVITQDNLVVNIDTVIYYQVTDARAATYEVASYIQAIEQLTVTTLRNIIGGMDLERTLTSREEINAALRGVLDEATGKWGIRVNRVELKAIEPPTSIQDSMEKQMRADRDKRAAILTAEGIRQSQILTAEGEKQSAILRAEGEAKAAALRAEGEAQAIRTVFESIHAGDADQKLLAYQYLQMLPKIAEGDANKLWIVPSEIGDALKGLSGAMGNFGPMGGGSGNAGTERREKPSVTD
>NZ_CP050974.1|WP_168490323.1|3182539_3182974_-|NfeD-family-protein
MNDINAWVWWLVGAAALGIPLVVTAMPEFGMLALGAAAAAVTAGLGGDVVLQVLVFAVVSFALIGVVRPIAARHRAQRPQLATGVEALKGKQAIVLERVDGSGGGRIKLGGEIWSARALDAGQAYEVGQEVDVVDIEGATAIVM
>NZ_CP050974.1|WP_168490324.1|3183098_3183890_-|ATP-binding-cassette-domain-containing-protein
MSDVLELEDVSVVREGRALVDQVSWSVKEGERWVILGPNGAGKTTLLNLASSYLFPSQGTATILGETLGKVDVFELRPRIGVAGIAMAEKLPKRQTVLQTVLTAAYGMTAGWHEDYEEIDEQRARAFLDRLGMSDYLDRRFGTLSEGERKRTLIARALMTDPELLLLDEPAAGLDLGGREDLVRRLGRLARDPIAPSMIMVTHHVEEIAPGFTHVLMIRQGKVLAAGPLELELTSRNLSLCFGLPLIVEQVGERWTAQGLPMS
>NZ_CP050974.1|WP_168490325.1|3184011_3184800_+|hypothetical-protein
MLSEPRSGRLAAWGNALLAGLVSPDDAVLAIVGEDAVHRVEGLPGESGPVGLTLALGRLRALGVTGLRVALPAPGHPLGLSGPPDFNARALDAEEAVVCHGAALGLVPEVYEAGPDGDVHVEVVWHCLAVREAPPADVPSLGEAERELAEALREATEVLSRLDVAGSGPVAEAAVDAYRARAERGREVLAPGYPPRAVRVLELAQRVGVLISVAYENGHGGAVSASEISARALALRPVERTARRAQVAAYNAFVEERERGVR
>NZ_CP050974.1|WP_054232214.1|3185026_3185272_-|chaplin
MKNLKKATAVAMVAGGLVAAGAGMASATDGSWAGGNAAGSPGVVSGNVIQAPIHIPVNAVGNSVNVIGVLNPAFGNLGLNH
>NZ_CP050974.1|WP_054232215.1|3185431_3186073_-|response-regulator-transcription-factor
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELKPDVVLMDVKMPGMDGIDALRKLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGVLLSQEEANSGQGRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

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Crispr_ID: NZ_CP050974_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_5

4199463-4199592

Unclear

Consensus_repeat	Method
GCCCCCACCGGCCCGCAACCGAGCGACCAGGAGCGGGCGG	CRISPRCasFinder

1 spacers

Cas14u_CAS-V

The CRISPR arrays of NZ_CP050974_5

>merge|NZ_CP050974|5|4199463-4199592|CRISPRCasFinder
GCCCCCACCGGCCCGCAACCGAGCGACCAGGAGCGGGCGGGAATCCGGGGCGAAGCCCCCGCCTTAGGGGCGCGGGGAACTGCGCGCCCCGCCCCCACCGGCCCGCAACCGAGCGACCAGGGGCGGGCGG

>NZ_CP050974|5|5|4199463-4199592|CRISPRCasFinder
GCCCCCACCGGCCCGCAACCGAGCGACCAGGAGCGGGCGG	GAATCCGGGGCGAAGCCCCCGCCTTAGGGGCGCGGGGAACTGCGCGCCCC
GCCCCCACCGGCCCGCAACCGAGCGACCAGGGGCGGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168491405.1\|4205957_4209056_-\|alpha-N-acetylglucosaminidase	unknown	unknown	gnl\|CDD\|377453
NZ_CP050974.1\|WP_168501013.1\|4202491_4202851_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP050974.1\|WP_168491393.1\|4192180_4192993_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP050974.1\|WP_168491401.1\|4201045_4202530_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
NZ_CP050974.1\|WP_060896461.1\|4204712_4205780_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP050974.1\|WP_168501012.1\|4196793_4198110_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP050974.1\|WP_168501009.1\|4188107_4189433_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
NZ_CP050974.1\|WP_168491403.1\|4202891_4204205_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP050974.1\|WP_067370584.1\|4198334_4199285_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP050974.1\|WP_101405248.1\|4193301_4193778_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_054235448.1\|4204201_4204699_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP050974.1\|WP_168491407.1\|4210010_4212122_-\|G-D-S-L-family-lipolytic-protein	unknown	unknown	gnl\|CDD\|238868
NZ_CP050974.1\|WP_168501011.1\|4194109_4195393_+\|beta-xylosidase	unknown	unknown	unknown
NZ_CP050974.1\|WP_101405245.1\|4196458_4196797_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP050974.1\|WP_168491390.1\|4189429_4190692_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP050974.1\|WP_168491395.1\|4195479_4196565_+\|DUF916-domain-containing-protein	unknown	unknown	gnl\|CDD\|368712
NZ_CP050974.1\|WP_168501014.1\|4200079_4200901_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NZ_CP050974.1\|WP_168491409.1\|4212118_4215778_-\|cellulase-family-glycosylhydrolase	unknown	unknown	gnl\|CDD\|366567
NZ_CP050974.1\|WP_168501010.1\|4190702_4191941_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14u_CAS-V	-	gnl\|CDD\|223747
NZ_CP050974.1\|WP_168491399.1\|4199641_4199995_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|180142

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168491405.1\|4205957_4209056_-\|alpha-N-acetylglucosaminidase	gnl\|CDD\|377453	pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain. Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations. The structure shows that the enzyme is composed of three domains. This central domain has a tim barrel fold.	1.31958e-137
NZ_CP050974.1\|WP_168501013.1\|4202491_4202851_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.71311e-44
NZ_CP050974.1\|WP_168491393.1\|4192180_4192993_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.72471e-07
NZ_CP050974.1\|WP_060896461.1\|4204712_4205780_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	3.34397e-141
NZ_CP050974.1\|WP_168501012.1\|4196793_4198110_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	8.29106e-168
NZ_CP050974.1\|WP_168501009.1\|4188107_4189433_+\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
NZ_CP050974.1\|WP_168491403.1\|4202891_4204205_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.70582e-95
NZ_CP050974.1\|WP_067370584.1\|4198334_4199285_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	2.88769e-162
NZ_CP050974.1\|WP_168501014.1\|4200079_4200901_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	5.943e-40
NZ_CP050974.1\|WP_054235448.1\|4204201_4204699_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	6.33021e-69
NZ_CP050974.1\|WP_168491407.1\|4210010_4212122_-\|G-D-S-L-family-lipolytic-protein	gnl\|CDD\|238868	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.93832e-83
NZ_CP050974.1\|WP_168501010.1\|4190702_4191941_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.07103e-33
NZ_CP050974.1\|WP_101405245.1\|4196458_4196797_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	8.20764e-53
NZ_CP050974.1\|WP_168491390.1\|4189429_4190692_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.22204e-28
NZ_CP050974.1\|WP_168491395.1\|4195479_4196565_+\|DUF916-domain-containing-protein	gnl\|CDD\|368712	pfam06030, DUF916, Bacterial protein of unknown function (DUF916). This family consists of several hypothetical bacterial proteins of unknown function.	4.00131e-12
NZ_CP050974.1\|WP_168491409.1\|4212118_4215778_-\|cellulase-family-glycosylhydrolase	gnl\|CDD\|366567	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.	1.23429e-95
NZ_CP050974.1\|WP_168491401.1\|4201045_4202530_+\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.30846e-41
NZ_CP050974.1\|WP_168491399.1\|4199641_4199995_-\|cytidine-deaminase	gnl\|CDD\|180142	PRK05578, PRK05578, cytidine deaminase; Validated.	1.86689e-05

>NZ_CP050974.1|WP_067370584.1|4198334_4199285_+|GTPase-Era
MSVRTQSSEPSEAPHRAGFACFVGRPNAGKSTLTNALVGQKVAITANQPQTTRHTVRGIVHRPDAQLILVDTPGLHKPRTLLGERLNDIVRTTWAEVDVIGFCLPANEKLGPGDRFIAKELASIKKTPKIAIVTKTDLVDSKTLAEQLIAIDQLGRELGFEWAEIVPVSAVGDKQVDLLADLIVPLLPEGPALYPEGDLTDEPEQVMIAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHAFVYIERPSQKGIIIGPKGKRLKEVGIKSRKQIEALLGTPVFLDLHVKVAKDWQRDPRQLRKLGF
>NZ_CP050974.1|WP_168501012.1|4196793_4198110_-|ammonium-transporter
MDTVNLAAASHLDTGDTAWLLAATALVLLMTPGLALFYGGMVRTKSVLNMLMMSFVSIALVTVVWLVVGYSLAFGDDAFGGLVGGLKHVGMDGIGPDSVHGTVPTLLFATFQLTFAIITAALISGAVADRAKFAAWLVFVPVWALLVYVPVAHWVWGPGGWVQAKLGALDFAGGLPVEITSGASGLALCLVLGPRLGFKKDAMRPHNLPMVMLGAGLLWFGWFGFNAGSALGADGLAAAFLNTLAAGCTGLLGWLFVEQKRDGHPTTLGAASGAVAGLVAITPSCGSVSLLGALVVGLAAGVVCSYAVGWKFRLNYDDSLDVVGVHLVGGIIGTVLIGFFADATMTGGAEGLLYGGGFGQLGKQLVAVVAVGAYAFTVTYGIGKVLDKVMGLRADEEHEHTGLDLTVHAETAYDHGVLGHGAPVSSSLPTAQKAKAQA
>NZ_CP050974.1|WP_101405245.1|4196458_4196797_-|P-II-family-nitrogen-regulator
MKLITAIVKPYRLDEVKTALQELGVHGLTVSEASGYGRQRGHTEVYRGAEYQVDLVPKVRIEVVVEDADSEAAIDAIVNAAQTGKIGDGKVWAVPVETVVRVRTGERGPDAL
>NZ_CP050974.1|WP_168491395.1|4195479_4196565_+|DUF916-domain-containing-protein
MRKLYVLVLSVFLLALTTPASYAADNGSWSVYPVSTQIAARPYFYLSADPGQTLRDKVTVANKTGAPLTFRLYAADAYNTARDGGFAVRTVQEKQLGVGAWAHPARSRVTVPARGSVTVPFTLRVPEKAEPGDHPGALVALDERLDRSDAATSAVAVQRAVGARIYLRVGGPTVPALAVEKVHISHHQPLVPGLGESGATISYTLRNAGNVTLNPKVRLRAEGLFGRTLLSRELTKIPSELLPGQRVRLTEPWHGAPQLDWGDVTLTASAPGTRESASTSFFALPWLMAVVVGAGIAAAVVVIRARRSGSGPWWLGARRGGTRPWWLRVRRGRARPSAPVRPSRPVRPTPSRRRSSPSARR
>NZ_CP050974.1|WP_168501011.1|4194109_4195393_+|beta-xylosidase
MTALAVTAGGALAAPAGAAAADSQNVDFATHCIPPAIAGIPPIDGTTTAIITVDNPSPKVGDTVTVTYKVVTPAANNPTALALPADIMTPTGKVALGGAQTGDVTVAGPRKNDPVAGNAPFPGFSMTGTFTVTSPGAITLAPGDYNIHTSYILELDTPCTVTNPPAPVSGTITATDGTQTNNRAISLGSASGKPGDSVTVTGSNFTPGASVTLAGRSGATQTADTATTTADAQGSISGTLAVNDKTTTGVVAYEGASWSDTKGAGPAAYVVVDDTPIPAGSQKLTTTVKAGTLSMSQAGDAVQLSAVDFGKGGASTGALQTVTVKDFRGGPAGWSLTGKVTDFTGPGAKIDAGKLSWTPACATKAGSPSTCQAGSSGAVGGAGATLASTPNGALTGGEFTVDAGLSLDVPAFTPPGSYSGVLTLTLT
>NZ_CP050974.1|WP_101405248.1|4193301_4193778_+|hypothetical-protein
MRRKQLGIAAALAAGTLAATGLALAPTAAAVTPLTATINATCTIGGGGAATLTATQDGTAATITLSSTSITAPIALAQDSIASTLTMAKSGGGTVAFTGTKNPAIPLGGGVTVGPLSGTVASGDSLDAYGGSLKMVVFGITITCTASAAQAPGPFVFS
>NZ_CP050974.1|WP_168491393.1|4192180_4192993_+|GNAT-family-N-acetyltransferase
MTTVNDTPLDRLERYYDSVPRAAARAEDFGPLTLFVREATGWPYYARPTLGWTGPAATAEDVDRVRARQRELCVPEAFEWVAEVTPGLREAVEATGLRVHAHPLMIRDEDAPLPDPHPLVRVLDPEDPFLAGALAVPHVAFAAPGTAVGEAGRGELATEITARAAEVPAAADRIRVGRTVLAAAVENGVVVCSGMHLPVGPVSEIAGVGTLPAERRRGLAYAVTAALVTDARERGVETLFLSAGDEDVARMYGRLGFRTVATALIAELGE
>NZ_CP050974.1|WP_168501010.1|4190702_4191941_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MKLVVQVKLMPTPVQAAALEVTLRACNEAASWASVMAFEKDVKRNFALREHTYGEVKARWGLGAQAAQHVIKKTCDAYATLKANLKAGNLGRPGSKRYRKAVEKPIGFRPEGAQPYDDRMLSWQIERRRISVWTVSGRVKDVTFTASPEQLATLALYRRGESDLLCRDGMWFLNATCEVPEAPLNSEQVDFLGIDLGIVNIATTSDGEIMAGRELNRFRVRERGLRTKLQHKNTPSAKRRLKKRRRKESRRARDINHKIAKHVVAEAERTGRGIALEDLTGIRERVRLNKPQRVTHSSWSFAQLGAFIAYKARRAGVAVVYVDPAYTSRTCAECGHVDRANRVSQAWFACRSCGFVDHADRNGSRNIRARAWELRRRGAPSTAPAPPRIPGSGAGRKRSITASDARYASPAL
>NZ_CP050974.1|WP_168491390.1|4189429_4190692_+|MFS-transporter
MTAADPVANVGALAEPVERVGRGWTSALSLANGAIWVGWYGPLQILLASQAEDFAPGTGMSKETMLAWVTGAGAVVSLIANPLFGALSDRTTALRGRRTPWIVAGSAGGALSLLLLAGAGGVWTMAAGWCLVQLTLNAAFAAITAAVPDRVPRLQRGSVGGWLGAAQILGVVGGTGLATAAGGVGGGYVACAVFTLVGVLPYVLRYEDLRLPASARPAWSWRTFAASFWLSPRRHPDLAWAWLTRFLINLSNALVLLYLLYYLRDRLHYDDPENGVLILTAVNGVTLLATVVVGGVWSDRVGRRKPFVIWSGVLMAVATAVLSGWQTWPGAIVAAAVLGIGFGVFTSVDFALMTDVLPKALDRGKDLGVINVANALPQVAAPALAAPIVTYLGGYRVLYLVAAVIGLAGALLVGRIRGVE
>NZ_CP050974.1|WP_168501009.1|4188107_4189433_+|beta-glucosidase
MARMVTNPLPQFPPGFLWGVSTSAHQIEGAAAERDPSVWDAFTAEPGHIKDGSTADVACDHYHRYPEDVALLADLGVDAYRFSISWPRVNSPGGLDFYDRLVDALVAAGIRPVPTLFHWDLPLKLEEAGGWLTRDTAERFAEYAGVVAARLGDRVKKWITLNEPAEHTLLGHALGAHAPGKQLLFDSLPVAHHQLLAHGLAVRSLRAAGVTDIGIANSHGPTWAASEQPEDVEAADFYDLLLNRLFADPLLLGRYPDGIGELMPGDVEADLKVIAEPIDWYGINYYQPTRVGAPEGAEIEFSGLTLPAELPFSVRELEGYPVTDFGWPVVPEALTELLVGFRERYGDRLPPVVITENGCSYEGVDDQERITFLDGHVRALHRALEQGVDVRGYFVWSLLDNFEWAEGYARRFGLVHVDYDTLKRTPKASYTWLRDALRARG
>NZ_CP050974.1|WP_168491399.1|4199641_4199995_-|cytidine-deaminase
MTDSSALDPEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAGTVDLPSLRLSALRTAVAMAVASGAKSLEAAAVVSEAGEVSSEDRAAVRDLGGPATPVLLAGADGTVHLTVTAG
>NZ_CP050974.1|WP_168501014.1|4200079_4200901_-|helix-turn-helix-domain-containing-protein
MSRRARVSPAEAGLPDGGARRRTPGLRREEVAVLAGVGASWYQWLEQGRDISVSPQVLDAVARVLRLSNAERRHLYLLAGLNPPAPEVAPEVRDMCDGLRRLIDTWMPYPAHIMDPYYNCVMYNDAAGMVLGMRPDNTQNCIIDFFTDPLYRGQSRTWEKNARTVVAQFRASCAAAPDDEGYQEVLDQLRAASPEFAALWEERDIEDAGQIRKELDHPLVGLLAVESTAMKVPARPDLTIVLHTPLPEANTAAKLEWLASPEGRRGSMYPVAG
>NZ_CP050974.1|WP_168491401.1|4201045_4202530_+|MFS-transporter
MAIDTTETTSASPTVHSPLGTRLSTRDKLVLFVLCAAQFMVALDFSVLNVALPVLGKDLGMSQSALQWAVTAFALPSGGFLLLFGRIGDLYGRRRLFLTGLALFGTASLLATFAWDPASFLTGRALQGLAAAAIVPTGMSLLTTTFPEGPARDRALGISGTLLSLGFTVGMVAGGVLTDVLSWRSTMGLLSVFALIVLPLAPGLLPESLPHSLKGMGGAPIPDRPRLDIPGAITVTGGLLALIYALSTAAERGFGGTDVIVTLAAGVLLLAAFVYVESRAHAPLVSLPMLRRRTVAWGNLGGLVTFSMMSTVIFALTLYLQETLGLSAFETGLVFGVQGVMSAVAGVYAPKVIGRFGARRTLVGSLAGQGLFVAGLVLLNAHTWSVWLATAAVSLASMCHLGAIISYGLTVTSGVPDEEQGLATGLVTSTQQVGLTIGIPLLGVLATTSGDLLAGVHTVLALDAAIVLAAAVLVATGLGRDRSRPVEAEALGLG
>NZ_CP050974.1|WP_168501013.1|4202491_4202851_-|MmcQ/YjbR-family-DNA-binding-protein
MKPQQLRAFCLSFNAAVEDFPFTPDISVFKVLGKLFALTWLDGRPLTVNLKCDPEDAVRLRAEHPGLIVPGYHMNKRHWNTVTVDGELPDRLVRELIEDSYDLVVAGLPKAERLRLDRA
>NZ_CP050974.1|WP_168491403.1|4202891_4204205_-|DUF21-domain-containing-protein
MSPQLVIGAVALVVVAWLAACAEAGLARVSSFRAEEAVRSGRRGSAKLAQVAADPTRYLNVALLVRVACEMAAAALVTYACLKEFDETWEALVVAIGVMVLVSYVAVGVSPRTIGRQHPLNTATAASYVLLPLARIMGPIPPLLILIGNALTPGKGFRRGPFASEAELRALVDLAEKESLIEDEERRMVHSVFELGDTLVREVMVPRTDLVVIERYKTIRQALTLALRSGFSRIPVTGESEDDVVGIVYLKDLARKTHISRDAESELVSTAMRPATFVPDTKNAGDLLREMQQERNHVAVVIDEYGGTAGIVTIEDILEEIVGEITDEYDRELPPVQELGDDRYRVTARLDIGDLGELYGFEAYDDEDVETVGGLLAKALGRVPIAGASSVVELPDGRELRLTAEAAAGRRNKIVTVLVEPVGPVDPEPSEEEKKSE
>NZ_CP050974.1|WP_054235448.1|4204201_4204699_-|rRNA-maturation-RNase-YbeY
MSIDVNNESGTEVDEQAILDIARYALARMRIHPLSELSVIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAERQGKEAPTQHSMDEELHLLTVHGVLHLLGYDHEEADEKAEMFGLQAAIVDGWRAEKGMTGPSPAPTVS
>NZ_CP050974.1|WP_060896461.1|4204712_4205780_-|PhoH-family-protein
MTQTPTAHSPASGQARAHFTVPAKHPMVTVLGSGDALLRVIEKAFPAADIHVRGNEISAVGDAGEVALVQRLFDEMMLVLRTGQPMTEDAVERSIAMLRASENGEGDGQETPAEVLTQNILSSRGRTIRPKTLNQKRYVDAIDKHTIVFGIGPAGTGKTYLAMAKAVQALQSKQVNRIILTRPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMLDPDSIPRLMAAGTIEVAPLAYMRGRTLNDAFIILDEAQNTSAEQMKMFLTRLGFESKIVVTGDVTQVDLPNGTKSGLRQVQDILEGLDDVHFSRLTSHDVVRHKLVGRIVDAYEKYDSENGTENGSHKSRGKAGHKGK
>NZ_CP050974.1|WP_168491405.1|4205957_4209056_-|alpha-N-acetylglucosaminidase
MQDNRGDLGSTGVTRRRIIAGAVALGGAALLARPQGAYAADRALFDTAPAAAALERLLPDHHRQVTLRAVADATDRFRVTGRVGHITVEGTSPAVLLAGFHTYLRRTAHASVSWTGEQLDLPRSLPAPAKEITGTANVPHRFAFNDTNEGYTGPYRDWDDWSRELDVLALHGVNDVLVYVGGDAVYYDTFRRLGYSDAELRAWIPAPAHQPWWLLQNMSGFGGPVSRRLLERRGELARKIVDRVRELGMTPVLPGYFGTVPDGFVAKHGGDAAVVAQGTWGGFARPDWLDPRTSAFREVADAFYRAQTERFGASTMYKMDLLHEGGNPGDVPVGEAAKAVETALRRAHPGAVWAILGWQTNPSTALLDAVDKSRMLIVDGLSDRYTTVTDRESDWGGTPYAFGSIWNFGGHTPIGANAPDWVEQYPRWRDREGSALAGIAAMPEAADNNAPALALLTDLAWTPGTVDLDDWFAAYAVSRYGGADPHAAAAWQAIRDTAYGMSRADSWSEAPDGLFGARPSLTANKAAAWGPEADRYDTTTFDRALTELLAVPKRLRESSAYRYDVVDVARQVLSNRTRVLLPQIKGAYETGEHALFGELTRTWLGWMDLLDDLLATSRPHLLGRWLADARAWGADAAERDRLEYDARSLITTWGGRASSEEGLHDYANREWAGLVGGLYRTRWKTYFDALSAGKDPAAVDWFALEDRWAHGHERYPAEPKGSPYVRARRVRDLLAATPHQSAVTAAADRGAVAEGAPVTVTVTFTHRNGFAPATAVTLFAETPEGLTAGALDPVNTASVAPGETFTARFEISLTGDARELVSRLVVGATYAGGGRTVAPVRLLAASGVRDPYRTASFNDAVFGQLGDELAIEGAGADLWGGTNEFGAVYRAGAYRDGTTATVRVLSQEATGGWARAGLIVRDDLATPGGGGYVNLAVTPSNGCVLTWDADGDGRFDSIAMAGSATAPVHLRLRRDGGAYTGEYSMDGTTWVTVGTATPGGAGAAQDVGVFMTAANGWTGRRGAATFEGLTIE
>NZ_CP050974.1|WP_168491407.1|4210010_4212122_-|G-D-S-L-family-lipolytic-protein
MRGLRALAAVVPLILLAAAPAHSERRGDAGWTGTWATSQHAAYDPGTSEVTVRVPVRVSAGGTSVRIRLTNAFTDQPVTIGHATVGRRADGSSVSGPRDLTFGGKREVTIPAGERTASDPVRIPVAARSDLVVSLYFPGRLTHISQHWMGLQTVYWTPDGGGDHAGDPGGAAFTKTDSTFPFLTGIDVRGGPARGSVVALGDSITDGAASTSDADRRWPDFLAGRLAACTTPAGVLNEGISGNRITAGTDGNPSALERLERDVLSQPGARTVILFEGVNDLSWGGATGDQVIDGMREIARRAHARGLRVIGATVVPYRGWGDWWTEAKEADRQQVNTFVRDSGGTFDGYADFDRAVRDPDDPTRYGAAFDSGDHLHPNDTGMKAFADAVDLAGLGVARDCPSARVRLTPYRPDLQVDHATEITATVTNAGPKAVDRVSSTLRLPEGWSARPEGETGLGSLAPGALSTVTWRVTPAAGTAWGAYDIGVRTSYRQAGRVRHDADTVAADVTPVPSPVQPPYGTFATTDDAQYAQNGSQFALWAGGRDLSGWKDEKAVIHVPDAVPATGAVTARLVSQTGSGPSAKAGIAVANDLTAPEKGGYAVLTMSRNYGIEFMTDSDGDGHLDTWAGGGASTHPAWLRLVRSGTTYTAYSTTNGLAWNEIASATVPSASGLLDAGVAASAVNLDHPGTTVQAVFDHFTVEST
>NZ_CP050974.1|WP_168491409.1|4212118_4215778_-|cellulase-family-glycosylhydrolase
MRRARLRTSLCAVALAAGCLSAVPAQAAQAPRQVPPQAPAQAHTVTYDQYAVKVDGKPLYLWGAELHYFRLPSPDTWRDVLQKVKAAGFNSVSLYFDWGYHSTSPGSYDFKGIRNVDRLLDEAERAGLYVIARPGPYINAEVSGGGFPAWRKTHAGVNRTSEEAYLKDAREWMSRINPIIARQQLTRGTGSVILYQVENEYQGGRQDADYMQTLIDWAREDGIDVPTFVNDGGANKNWVSGKGAPDIYGFDAYPQGFDCSSPDTWKNLPDYSYVNDWKPESPLLIPEAQGGAFDAWGGTGYDNCRKLTGTDFTRVSAKMNIAAGVTGQSFYMTYGGTNWGWLADPNAVYTSYDYGAPITESRQLTDKYQEFKRLGYFVNAVKPLARTDKAEAPAPSDDALRIDRRVNPDDGTQFLTVRHADTRVKDTDTTTLSLSGRDGDYPRVPQQGAITVAGRDAKLLVAGYDMERQRLVYSTSEIMTHARIGADDVALLYGRRGEAGETVLRYPSKPKVTVLDGKADVTWDAARGDLRLNYTHQGLIRVRVGDLVLLLADEQETAHWWRQDTAAGSVLVRGPSLLRTAEVDGATLKLTGDSTEAASIEVLADAGNVTWNGRRTAVTSAPRPVTLPALTTWRTHDETPEVTPDFNDSTWTTADHLTADNPDLAGYTPVLAMDEYGFHHGDVWYRGRFRTTGGTSAVTLNANTGPHGVYAAWLNGRYLGSAGDGAHTFDVPDGVLADGGGDNVFSVLVENMGDNEEWGHDYSKEPRGLLSADLLGTDSTITWRIQGDRGGEQPVDTARGAYNNGGLYGERAGWSLPGYPDRSWTRTTLAARSAKSAPGVRWYRTNARLDLPHGQDTSLGLQLEDGRSKDYRVQIFVNGWLVGRQLADTGPQTRFVIPSGLLNEHGDNTIALAVWSTEAGAGPGSAHLVDLGASAGGIGIGTVPAPSYDAKTYTDAPAGAQVTVDAEPFLSAALPGRATVSFHVPGKVGKAARDVDLSLKAPAGWTVTTDAPTHFPRVAPGAIITAEYTVTPPADPVPYTVLTATASYGRNGRTVTITGERAVQVAPPAPPGDSYVGDLPLVRAVNGWGPVEKDTSNGENAAGDGHPLAIGGTTYAKGLGVHADSQVRVYLGGACTWFTATVGVDDEVGDGGSVSFRAVADGRVLFTSPVLYGSDGGTPVDVDVTGARWLDLTVDGGGDVSADHADWADARLTCAGGTS

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Crispr_ID: NZ_CP050974_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_6

4236779-4236909

Orphan

Consensus_repeat	Method
AGGGGCGCGGGGAACTGCGCGACCAGCCCCCACCCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_6

>merge|NZ_CP050974|6|4236779-4236909|CRISPRCasFinder
AGGGGCGCGGGGAACTGCGCGACCAGCCCCCACCCGCCCTCGGCCGAAGAACTCCACACGGCCGGAGATCCGGGGCGCAGCCCCGATCCCTCAGGGGCGCGGGGAACTGCGCGACCAGCCCCCACTCGCCC

>NZ_CP050974|6|6|4236779-4236909|CRISPRCasFinder
AGGGGCGCGGGGAACTGCGCGACCAGCCCCCACCCGCCC	TCGGCCGAAGAACTCCACACGGCCGGAGATCCGGGGCGCAGCCCCGATCCCTC
AGGGGCGCGGGGAACTGCGCGACCAGCCCCCACTCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168491420.1\|4230180_4230573_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319925
NZ_CP050974.1\|WP_168491430.1\|4235858_4236668_+\|DUF3097-family-protein	unknown	unknown	gnl\|CDD\|378628
NZ_CP050974.1\|WP_168491440.1\|4251521_4251767_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168491432.1\|4236950_4238183_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|180172
NZ_CP050974.1\|WP_168491422.1\|4230658_4231399_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|367950
NZ_CP050974.1\|WP_168501019.1\|4240786_4244863_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|237951
NZ_CP050974.1\|WP_075032705.1\|4233732_4234755_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP050974.1\|WP_075032712.1\|4249770_4250037_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|376586
NZ_CP050974.1\|WP_168491436.1\|4245540_4247415_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223953
NZ_CP050974.1\|WP_101405217.1\|4247676_4249545_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP050974.1\|WP_168491434.1\|4238247_4240581_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP050974.1\|WP_067369969.1\|4244874_4245459_+\|response-regulator	unknown	unknown	gnl\|CDD\|381147
NZ_CP050974.1\|WP_168491438.1\|4250455_4251454_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|236130
NZ_CP050974.1\|WP_168491425.1\|4231395_4232484_-\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|367316
NZ_CP050974.1\|WP_168501018.1\|4229487_4230018_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_101408140.1\|4249569_4249752_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237417
NZ_CP050974.1\|WP_168491415.1\|4225682_4226036_-\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|238607
NZ_CP050974.1\|WP_168491418.1\|4226193_4229442_-\|peptidase-S41	unknown	unknown	gnl\|CDD\|227282
NZ_CP050974.1\|WP_101405225.1\|4232595_4233732_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237654
NZ_CP050974.1\|WP_168491427.1\|4234981_4235827_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168491420.1\|4230180_4230573_-\|VOC-family-protein	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.69508e-31
NZ_CP050974.1\|WP_168491430.1\|4235858_4236668_+\|DUF3097-family-protein	gnl\|CDD\|378628	pfam11296, DUF3097, Protein of unknown function (DUF3097). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.71871e-166
NZ_CP050974.1\|WP_168491432.1\|4236950_4238183_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|180172	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated.	0
NZ_CP050974.1\|WP_168491422.1\|4230658_4231399_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|367950	pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.	1.79344e-70
NZ_CP050974.1\|WP_168501019.1\|4240786_4244863_+\|HAMP-domain-containing-protein	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	8.27883e-76
NZ_CP050974.1\|WP_075032705.1\|4233732_4234755_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.07159e-154
NZ_CP050974.1\|WP_075032712.1\|4249770_4250037_+\|30S-ribosomal-protein-S20	gnl\|CDD\|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	5.85228e-24
NZ_CP050974.1\|WP_168491436.1\|4245540_4247415_-\|AMP-binding-protein	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	0
NZ_CP050974.1\|WP_101405217.1\|4247676_4249545_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP050974.1\|WP_067369969.1\|4244874_4245459_+\|response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.09581e-28
NZ_CP050974.1\|WP_168491438.1\|4250455_4251454_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|236130	PRK07914, PRK07914, hypothetical protein; Reviewed.	9.8111e-89
NZ_CP050974.1\|WP_168491425.1\|4231395_4232484_-\|nitronate-monooxygenase	gnl\|CDD\|367316	pfam03060, NMO, Nitronate monooxygenase. Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite.	6.24155e-123
NZ_CP050974.1\|WP_168491434.1\|4238247_4240581_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.64408e-43
NZ_CP050974.1\|WP_101408140.1\|4249569_4249752_+\|hypothetical-protein	gnl\|CDD\|237417	PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional.	0.00213962
NZ_CP050974.1\|WP_168491415.1\|4225682_4226036_-\|HIT-domain-containing-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	1.85138e-48
NZ_CP050974.1\|WP_168491418.1\|4226193_4229442_-\|peptidase-S41	gnl\|CDD\|227282	COG4946, COG4946, Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown].	3.69023e-118
NZ_CP050974.1\|WP_101405225.1\|4232595_4233732_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237654	PRK14278, PRK14278, chaperone protein DnaJ; Provisional.	0
NZ_CP050974.1\|WP_168491427.1\|4234981_4235827_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	6.04216e-38

>NZ_CP050974.1|WP_168491430.1|4235858_4236668_+|DUF3097-family-protein
MRQYSPDLTPPWKKPKPVPEVPAEPGLVVEEPATGFCGAVIRCEAGTVTLEDRFGKHRVFPLEPRGFLLEGRVVTLTRPSPSSTAVRPTRTASGSVAVPGARARVARAGRIYVEGRHDAELVERVWGDDLRIEGVVVEYLEGVDDLPAIVADFSPGPDARLGVLVDHLVPGSKESRIAASVTSEHALVLGHPYIDIWEAVKPSSVGIPSWPRVPHGQDWKTGVCRALGWPENTGAAWQHILSRVHSYKDLQPELLGRVEELIDFVTAPH
>NZ_CP050974.1|WP_168491427.1|4234981_4235827_+|MBL-fold-metallo-hydrolase
MKVTWEEAGWEQLTPRVGRRRLPVWDCTVGLVVGEGGALIVDAGSSLAEGARLRGEAQALAGRRVTFLALTHPHFDHVLGAAAFAGAEVLVAGGSAEVYEHGREELYADAVRGGLDARAAEDAADTLVRPRHYVWGTWHLELTGGVEVLLVRTGEGHTAHDLVVVVPGEPTVVFCGDLVEESGEPQAGPDAVPSRWPGALDRLLDLGGEDALYVPGHGAVVDAGFVRSQRDALAARFGVPGSATAGLATPGLATPGFATPGFATPGFATPGFDASDFGVSR
>NZ_CP050974.1|WP_075032705.1|4233732_4234755_-|heat-inducible-transcriptional-repressor-HrcA
MLSERRLEVLRAIVQDYVGTDEPVAVGSKALTERHRLGVSPATVRNDMAALEDEGYIAQPHTSAGRIPTDKGYRLFVDKLAGVKPMTAPERRAIQNFLDGAVDLDDVVGRTVRLLAQLTRQVAVVQYPSLTRSTVRHVELLSLAPARVMLVLITDTGRVEQRMIDCPAPFGETSLADLRARLNSRVAGRRFADVPQLVQDLPDAFEAEDRGTVATVLSTLLETLVEETEERLMIGGTANLTRFGHDFPLTIRPVLEALEEQVVLLKLLGEAGDSSMTVRIGHENAYEGLNSTSVVSVGYGSGGEAVAKLGVVGPTRMDYPGTMGAVRAVARYVGQILAES
>NZ_CP050974.1|WP_101405225.1|4232595_4233732_-|molecular-chaperone-DnaJ
MATDYYAVLGVRRDASQDEIKKAFRRLARELHPDVNPDPKTQERFKEINAAYEVLSDPQKKQVYDLGGDPLSQSGGGGAGGFGAGGFGNFSDIMDAFFGTASQRGPRSRTRRGQDAMIRLEIELDEAAFGTTKDIQVDTAVVCATCNGEGAAPGTSAQTCDMCRGRGEVSQVTRSFLGQVMTSRPCPQCQGFGTVVPTPCPECAGDGRVRSRRTLTVKIPAGVDNGTRIQLAGEGEVGPGGGPAGDLYVEIHELPHSTFQRRGDDLHCTVTIPMTAASLGTKVPLETLDGLEEVDIRPGTQSGQSIPLHGRGVTHLRGGGRGDLIVHVEVTTPTKLDPEQERLLRELAQLRGEERPTGQFQPGQQGLFSRLKDAFNGR
>NZ_CP050974.1|WP_168491425.1|4231395_4232484_-|nitronate-monooxygenase
MSTALTDLFPHPIVQAPMAGGVSVPHLAAAVSEAGGLGFLAAGYKTADGMYQEIKQLRGLTGRPFGVNLFVPQPEYADPAAVEVYAHQLAGESSWYETELGEPDSGRDDGYDAKLAVLHDNPVPVVSFHFGIPSPDVLDSLRRAGTLTVITATTAEEALAVQRAGADAVIAQGVEAGGHQGTHRDNPETDGTGIGLLSLIAQVRETVDIPIIAAGGIMRGSQIAAVLAAGANAAQLGTAFLATPESGANAVHKQALTNPLFVRTELTRAFSGRPARGLVNRFMREHGPYAPAAYPEVHHLTSPLRKAAAKAGDAQGMALWAGQGHRMARELSAGQLVEVLSAELEAARTALSAAGEAGGEVR
>NZ_CP050974.1|WP_168491422.1|4230658_4231399_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MTAPVFVVEHFDADGVGRHVLDGSEGRHAVSVKRLNPGEDVVLTDGAGRWAQCVVVATEGKDRLIVQMDSVAEEPVEEPRVTVVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGERGLKALAKWRATAREAGKQSRRVRFPEVADAATTKQVAALLAKADFAAVLHESGAEPLATAELPERGEIVLVIGPEGGVSPEELALFAESGAKAYRLGRSVLRTSTAGTAATALLLGRTGRWS
>NZ_CP050974.1|WP_168491420.1|4230180_4230573_-|VOC-family-protein
MELAQVRLLVSDFPVCYRFYAEVLGLKPQSGATEGPYEKFSPTAGSAGIALQDRAMMARILGELGDSASGHRSLVVLRVDDLDSYCEAITSRGAVLVHGPDFMTDRMRVAHLKDPEGNLVELQEWLLLRT
>NZ_CP050974.1|WP_168501018.1|4229487_4230018_-|hypothetical-protein
MVAGLAVVSAFGVAACEPVGGLSASAVAYTTDRAGTAELQRQHVDVQYLSCTGSYGGGNKAYTPGHTPSASSSTPSVVEVDCRGQTKDRREITITGKVTREVEGKCVRGDLTAKVGGKQWFHVNVLGNCNAPSTPSYTPPTYNAPTYHRPGPTTTVTVTKTMWCKGDPTCWPSQGK
>NZ_CP050974.1|WP_168491418.1|4226193_4229442_-|peptidase-S41
MTQSASSASSALPAYLRFPHLHGELVAFTAEDDVWVAPLDGGGRAWRVSADNVPVNHPRISPDGTTVAWTSTRDGAPEVHAAPLEGGPSTRLTYWGSAKTQVRGWTPDGRVLALSTQGQASLRRSWARAVPLDGGPATTLPYGPVGDVVHGDAGVLLLSAPMGREAAWWKRYRGGTAGKLWIDRDGGDGVGAGEFVRLHEDLDGNLEYPLWVGERVAFLSDHEGVGALYSSLADGSDLRRHTPIDGFYARHAATDGARVVYASAGELWLLDDLDGAEPRRLDLRLGGQRVDQQPHPVSASRWFSAAAPDHTGRGSAVSVRGAVHWVTHRSGPARALAARPGVRARLPRAFRVEGEEYVVWVTDAAGDDALEFAPATGLAPGATPRRLAAGQLGRVLGLAMAPDGSRAAVASHDGRVLLVERETGEVREVDRSEDGEVSGLVFSPDSAWLAWSHPGPRPLRQLKLANTADLSVTEATPLRFRDYAPAFTLDGKHLAFLSARSFDPVYDEHVFDLAFVGGSRPHLITLAATTPSPFGPQRHGRPFEAPDKDETPDSEGAPTTRIDLDGLADRIVPFPVEAARYSTLRAAKDGLLWLRHPVVGVLGASRATPDDPDPKTELERYDLAQQRVEHLAADAEHFAVSGDGKRVLLWTDGKLKVVPSDRRASNDDESDTNITVDLSRVRQTIDPAAEWRQMYDETGRLMRDNFWRPDLGGVDWEGVLDRYRPVLERVATHDDLVDLLWEVQGELGTSHAYVTPRGGWGGGDRAQGLLGADISRHEDGSWRIDRILPSETSDPDARAPLAAPGVAVRAGDAIVAVAGQPVDPVAGPGPLLVGTAGKPVELTVSPSGGGDPRHAVVVPLADEEPLRYHAWVADRRAYVHEQSGGRLGYLHVPDMQAPGWAQIHRDLRIEVAREGLVVDVRENRGGHTSQLVVEKLARRIVGWDLPRGMRPYSYPEDAPRGPVVAVANEFSGSDGDIVNAAIKALGIGPVVGTRTWGGVVGIDSRYRLVDGTLVTQPKYAFWLDGYGWGVENHGVDPDVEVVQTPQDYAAGRDAQLDEAIRIALAALAENPAKAAPTLPELD
>NZ_CP050974.1|WP_168491415.1|4225682_4226036_-|HIT-domain-containing-protein
MTGEPQDDCLFCKIVAGHVPANVVRETETTVAFRDINPQAPTHILVIPKVHHPDVASLAAAEPAIAADVLREAGEVASEEKLESYRIVFNTGGGAGQTVFHAHAHLLGGRGMQWPPG
>NZ_CP050974.1|WP_168491432.1|4236950_4238183_-|coproporphyrinogen-III-oxidase
MPSALPDGEPVPDDGALPAHALAGAAERPLGFYLHVPYCATRCGYCDFNTYTATELRGTGGVLASRDNYAETLIDEVRLARKVLGDDPRPVRTVFVGGGTPTLLAADDLVRMLGAIRDEFGLADDAEITTEANPESVDPRYLETLRTGGFNRISFGMQSARQHVLKVLDRTHTPGRPEACVAEARAAGFEHVNLDLIYGTPGESDDDWRASLDAALGAGPDHVSAYALIVEEGTQLARRIRRGEVPMTDDDVHADRYLIADEVLSGAGFDWYEVSNWATSAAGRCLHNELYWRGADWWGAGPGAHSHVGGVRWWNVKHPGAYAGALAAGRSPGAGRELLSEEDRRVERILLELRLREGCPLSLLRVEGLAAAGRALSEGLLESGPYGEGRAVLTLRGRLLADAVVRDLVD
>NZ_CP050974.1|WP_168491434.1|4238247_4240581_-|SpoIIE-family-protein-phosphatase
MGAIPTQRESQPDSTALAPGTPAHYRAGQEAMARAALPGTPLAPGAARRMVRETLADWGELALPGAEIVRERLAEDAVLVVSELVTNAVVHAGTDVELLCRLEITDGGAVGAVVVEVSDHHPSRAVREESAERAYGIPEYGRGLRLVASLSEAWGITYRTGVKTVWARLPVDGGLSVDEGLGVQGGLGVESGMGVEGGLGVESGLGVEGGLRVESGLGVKGELGVEGGLGVEGGLSVGGGLGVERGLSVGGGFGVDRGMGVGPGMTEAAGLSAGSGLADGFGLPGGIGVPGGTGLVGETGPADETGLVGERVAPEPRQRPQQDGDWLNRGALSFLAEASDLLAGQLDEDLVAALAGQLLVPRLADWCAVWLEDEATDRAGGLGLALGPRLARVWHGSENRIEELRRALEKDPPRLPDSVRSRAVPVPWPGEASGPGEALGTGQVPGQTGGTGGVSGAALAYRLIAGGRPLGTLVIGRAGLAAFPDEITGLVEDLSRRIALAIGAARQYARQATISRVLQRGLLPGAVAEIPGVRSALVYEPLDKGGPSGDFYDLFPAGDGRWCFVLGDVQGKGPEAAVVIGLARPWVRLLAREGYHVADVLDRLNQLLLDDATEAADAAARALVATGGPGLGPDEGPQTRFLSMLYGELVPFEGGVRCTLASAGHPLPLILGPDGDVREVAEPQTLLGVFEDATYVSETFDLYPGDTVLCVTDGVTERRSGPRQFDDDEGLAEALAGCTGLSAELVAERIRRLVHEFGSKPPEDDLALLVLQAEWEE
>NZ_CP050974.1|WP_168501019.1|4240786_4244863_+|HAMP-domain-containing-protein
MTAARDGDFTKVPETGHGLVADLTATFNQIIDRSTHFNTEVQRVRRELVRHGRLDERLSASPGQGSWTTRVNDVNQLLDALVAPAANATRVLDAVAGGDLTQRVDLHDGNRQLRGDLRRLGRAVNKMVDQLSLFTGEVTRVAREVGTEGRLGGRAKVQGLSGSWRDVTEAVNTMASRLTAQVRDIALVTTAVARGDLTRTVTVEATGELLELKLTVNTMVDQLSAFADEVTRVAREVGTEGQLGGRAQVRGVSGVWKDLTDNVNFMASNLTSQVRNIAQVTTAVANGDLSQKITVDAKGEILELKSTINTMVDQLSAFADEVTRVAREVGTEGNLGGRAQVRGVSGVWKDLTDNVNFMADNLTSQVRNIALVSTAVAQGDLGKKITVEAKGEILELKSTINTMVDQLSAFADEVTRVAREVGTEGNLGGQAQVRGVSGVWKDLTDNVNFMALNLTSQVRNIAQVTTAVANGDLSKKITVDARGEILELKDTVNTMVEQLRAFADEVTRVAREVGTDGRLGGRAQVLGVSGVWRDLTDNVNYMADNLTSQVRNIAQVATAVAQGDLSKKIDVDARGEILELKTTINTMVDTLSSFSSEVTRVAREVGSEGQLGGQARVEGVYGTWKRLTTNVNELASNLTTQVRAIAEVASAVAQGDMSRSITVETQGEVAELKDNINLMVANLRETTRAKDWLESNLARLAALMQGHRDLMEVADLILRELTPLVNAQYGAFFLADPEEDGTSLHTAVPAKGLAFIAGYGSAQGATVDTGGMPVHGLVRQAAREKKRILVEEAPPDYIKINSGLGEAAPASVVIIPILFEDKLLGVIELASFSRFSDVHLAFFDQFVNTIGVAINTIIANSRTESLLGESQRLAIQLQDRSDELQSQQAELQRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTLDRGLAFEVTVGEDVPREMYSDEQRLQQILRNLLSNAIKFTATGRVELRVNRLKDPEHAFTRENSDDVIAFAVSDTGIGIAAEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREISGLLGGRIIAESAPGKGSTFTLYVPVISPGHTATGPASEDDRPLVPEQLSTEPYTSHDTDDSWPTPTKLEAWKAGRAGQVLPGRRVLIVDDDIRNVFALTHVLGRVGMPVLYAENGREGIETLERNPDVQLVLMDIMMPEMDGYETISAIRRTPRWTGLPIVALTAKAMPGDREKSIARGANDYVPKPVDVDQLLTVVCALLDPESVHDAEQDDSEGSVVPGPSTSSEEAAAPPTTE
>NZ_CP050974.1|WP_067369969.1|4244874_4245459_+|response-regulator
MSAEETTYERASILLVDDMEDNLIALEAVLGSLNEPLVRARSGEEAMKALLRQRFAVVLLDIRMPGMDGFETAANIKRLDQTKDVPIIFLTGTDADAGYAFRGYATGAADYLTKPFDPWVLRAKVTVFLDLHRKNQQLERLLTQEHTHAAQISTRLAALEKRLSSEDPPDLSDLRRQVRELQSLVAGLSGNRAL
>NZ_CP050974.1|WP_168491436.1|4245540_4247415_-|AMP-binding-protein
MSDTQTLIENRPPSVAALFLERVAATPNAEAYRYPVHPASGEGSDEWKALSWAQAAERVYAVAAGLIELGVQPEQRVALASSTRVEWILADLGIMCAGAATTTIYPQTNAEESAFILSDSDSKVLIAEDAAQLAKAREKRAELPELTHIVVIDPAGVETGDGVLTLAELETRGAAYLEKNPELIKERVGAITADQLATLIYTSGTTGRPKGVRLPHDNWSYMAKAIASTGLLGPDDVQYLWLPLAHVFGKVLTSGQIEVGHVTAVDGRVDKIIENLPVVQPTYMAAVPRIFEKVYNGVAAKARAGGGAKYKIFQWAAEVSREYAKASQDNFRRTGTAAVPFGLGAKHKVADALVFAKIREAFGGRLRACVSGSAALAPEIGYFFAGAGIHILEGYGLTESSAASFVNPGEAYRTGTVGKPLPGTEVRIADDGEILLRSPGIMEGYHGLPEKTAEVLEADGWFHTGDIGELSPDGYLRITDRKKDLIKTSGGKYIAPAEVEGQFKAVCPYVSNILVHGADRNFCTALIALDEPSILEWAKENGLEGKSYAEVVAAPATVALVEGYVKELNEGLQRWQTIKKFRLLPRDLDVEHGEITPSLKLKRPVVEREYKGLIEEMYAGSREA
>NZ_CP050974.1|WP_101405217.1|4247676_4249545_-|elongation-factor-4
MPATPNNVPEPSRTAPALIRNFCIIAHIDHGKSTLADRMLQLTGVVEQRQMRAQYLDRMDIERERGITIKSQAVRLPWAPTEDPGNTHILNMIDTPGHVDFTYEVSRSLAACEGTVLLVDAAQGIEAQTLANLYLAMENDLKIIPVLNKIDLPAAQPEKFSEELANLIGCDPEDVLRVSAKTGVGVEALLDKVVAEIPAPVGVQDAPARAMIFDSVYDSYRGVVTYVRVIDGQLNKRERIRMMSTGATHELLEIGTNSPEMLPADGLGVGEVGYLITGVKDVRQSKVGDTITTLNKGATEALGGYKDPKPMVFSGLYPLDGSDYPELRDALDKLQLNDAALVYEPETSAALGFGFRVGFLGLLHLDVIRERLEREFGLDLIATAPNVVYRVLMEDGSEHVVTNPSEFPEGKISEVYEPVVRATILAPSEFIGSIMELCQTRRGTLLGMDYLSEDRVEIRYTLPLAEIVFDFFDQLKSKTRGYASLDYEPTGEQTSSLVKVDILLHGDKVDAFSAITHKDAAYAYGVRLVAKLRELIPRQAFEVPIQAAIGSRVIARETIRAIRKDVLAKCYGGDISRKRKLLEKQKEGKKRMKMVGSVEVPQEAFIAVLSSDDSGGSAKGKK
>NZ_CP050974.1|WP_101408140.1|4249569_4249752_+|hypothetical-protein
MSPRVGSIRRLHGPTGGELRPVWAGRTATGSLGGCVSCPLCRRHTPKEIKRRVRRAVSRA
>NZ_CP050974.1|WP_075032712.1|4249770_4250037_+|30S-ribosomal-protein-S20
MANIKSQIKRIKTNEKARLRNKSVKSSLKTAIRKAREAAAAGDVEKATEYTRAASRQLDKAVSKGVIHKNQAANKKSALASKVASLKG
>NZ_CP050974.1|WP_168491438.1|4250455_4251454_-|DNA-polymerase-III-subunit-delta
MLSVMAKKTAQDDPLAPVTLAVGQEDLLLDRAVQEVVAAARAADADTDVRDLTPDQLQPGTLAELTSPSLFSERKVVVVRNAQDLSADTVKDVKAYLDAPAEEITLVLLHAGGAKGKGLLDAARKVGAREVACPKMTKPADRLAFVRGEFRALGRSAAPEACQALVDSIGSDLRELASAVSQLTADVEGTIDEAIVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTGVAPVLITSALAQGVRAIGKLSSARGGRPADLARELGMPPWKIDRVRQQMRGWTPDGIAVALRAVADADAGVKGGGDDPEYALEKAVVAIAWAARSGRG
>NZ_CP050974.1|WP_168491440.1|4251521_4251767_-|hypothetical-protein
MSDVRHVLVLPDRDAAEEAAEVIGDRFGLDEEPQLVRDALAGEDDAEDAQWLVVLTDPGERLDPKELDEFAGEWDGWREEP

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Crispr_ID: NZ_CP050974_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_7

4658520-4658625

Orphan

Consensus_repeat	Method
CTCTCAGGGGCGCGGGGAACTGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_7

>merge|NZ_CP050974|7|4658520-4658625|CRISPRCasFinder
CTCTCAGGGGCGCGGGGAACTGCGCAATCTTTTGGAGGACGCGCGGAACTGCGGAACCTTGGCGGCACAGGTGACCGCAGGCTTTCAGGGGCGCGGGGAACTGCGC

>NZ_CP050974|7|7|4658520-4658625|CRISPRCasFinder
CTCTCAGGGGCGCGGGGAACTGCGC	AATCTTTTGGAGGACGCGCGGAACTGCGGAACCTTGGCGGCACAGGTGACCGCAGG
CTTTCAGGGGCGCGGGGAACTGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168501054.1\|4665653_4667117_+\|phosphate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP050974.1\|WP_168491945.1\|4651528_4652239_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|274534
NZ_CP050974.1\|WP_168501052.1\|4658047_4658497_+\|heme-degrading-domain-containing-protein	unknown	unknown	gnl\|CDD\|179430
NZ_CP050974.1\|WP_168491959.1\|4661010_4661538_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP050974.1\|WP_168491949.1\|4653571_4654330_-\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225099
NZ_CP050974.1\|WP_168491942.1\|4650458_4651532_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP050974.1\|WP_168491938.1\|4648809_4649607_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|132299
NZ_CP050974.1\|WP_168501055.1\|4668787_4671868_+\|DUF3427-domain-containing-protein	unknown	unknown	gnl\|CDD\|197297
NZ_CP050974.1\|WP_168491961.1\|4661671_4663078_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP050974.1\|WP_168491951.1\|4654378_4655437_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240291
NZ_CP050974.1\|WP_168501053.1\|4659684_4660392_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|376730
NZ_CP050974.1\|WP_168491955.1\|4658701_4659559_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP050974.1\|WP_168491963.1\|4663251_4664091_-\|class-E-sortase	unknown	unknown	gnl\|CDD\|320679
NZ_CP050974.1\|WP_168491967.1\|4667564_4668545_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366960
NZ_CP050974.1\|WP_168491940.1\|4649593_4650466_-\|2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|237888
NZ_CP050974.1\|WP_168491953.1\|4656932_4658012_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP050974.1\|WP_168491947.1\|4652244_4653369_-\|TIGR03364-family-FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|132407
NZ_CP050974.1\|WP_168491957.1\|4660607_4660934_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168491965.1\|4664279_4665299_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376935
NZ_CP050974.1\|WP_168491936.1\|4647669_4648752_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|237887

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168501054.1\|4665653_4667117_+\|phosphate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.45906e-49
NZ_CP050974.1\|WP_168491945.1\|4651528_4652239_-\|HAD-hydrolase-like-protein	gnl\|CDD\|274534	TIGR03351, PhnX-like, phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the substrate is also, like Pald, a 2-oxo-ethylphosphonate. Despite this, the genomic context of members of this family are quite distinct from PhnX, which is almost invariably associated with the 2-aminoethylphosphonate transaminase PhnW (TIGR02326), the source of the substrate Pald. Members of this clade are never associated with PhnW, but rather associate with families of FAD-dependent oxidoreductases related to deaminating amino acid oxidases (pfam01266) as well as zinc-dependent dehydrogenases (pfam00107). Notably, family members from Arthrobacter aurescens TC1 and Nocardia farcinica IFM 10152 are adjacent to the PhnCDE ABC cassette phosphonates transporter (GenProp0236) typically found in association with the phosphonates C-P lyase system (GenProp0232). These observations suggest two possibilities. First, the substrate for this enzyme family is also Pald, the non-association with PhnW not withstanding. Alternatively, the substrate is something very closely related such as hydroxyphosphonoacetaldehyde (Hpald). Hpald could come from oxidative deamination of 1-hydroxy-2-aminoethylphosphonate (HAEP) by the associated oxidase. HAEP would not be a substrate for PhnW due to its high specificity for AEP. HAEP has been shown to be a constituent of the sphingophosphonolipid of Bacteriovorax stolpii, and presumably has other natural sources. If Hpald is the substrate, the product would be glycoaldehyde (hydroxyacetaldehyde), and the associated alcohol dehydrogenase may serve to convert this to glycol.	2.7803e-55
NZ_CP050974.1\|WP_168501052.1\|4658047_4658497_+\|heme-degrading-domain-containing-protein	gnl\|CDD\|179430	PRK02487, PRK02487, heme-degrading domain-containing protein.	1.55142e-81
NZ_CP050974.1\|WP_168491959.1\|4661010_4661538_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	6.96604e-25
NZ_CP050974.1\|WP_168491949.1\|4653571_4654330_-\|UTRA-domain-containing-protein	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.9983e-61
NZ_CP050974.1\|WP_168491942.1\|4650458_4651532_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.24095e-134
NZ_CP050974.1\|WP_168491938.1\|4648809_4649607_-\|ABC-transporter-permease-subunit	gnl\|CDD\|132299	TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.	1.31191e-53
NZ_CP050974.1\|WP_168501055.1\|4668787_4671868_+\|DUF3427-domain-containing-protein	gnl\|CDD\|197297	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	2.32411e-80
NZ_CP050974.1\|WP_168491961.1\|4661671_4663078_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.73933e-30
NZ_CP050974.1\|WP_168491951.1\|4654378_4655437_-\|hypothetical-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	3.27063e-06
NZ_CP050974.1\|WP_168501053.1\|4659684_4660392_-\|membrane-protein-insertase-YidC	gnl\|CDD\|376730	pfam02096, 60KD_IMP, 60Kd inner membrane protein.	5.41558e-31
NZ_CP050974.1\|WP_168491955.1\|4658701_4659559_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.85975e-91
NZ_CP050974.1\|WP_168491963.1\|4663251_4664091_-\|class-E-sortase	gnl\|CDD\|320679	cd05830, Sortase_E, Sortase domain found in the class E family of sortases. Class E sortases are membrane-bound cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Actinobacteria). Genes encoding class A and E sortases are never found in the same organism, and similar to class A sortases, the genes encoding class E sortases are not positioned adjacent to genes encoding potential protein substrates, suggesting a housekeeping sortase function of class E sortases in some high G + C Gram-positive bacteria. Similar to class A sortase, class E sortases are capable of anchoring a large number of functionally distinct surface proteins containing a cell wall sorting signal to an amino group located on the bacterial cell wall. They recognize an LAXTG sorting signal, instead of the canonical LPXTG motif processed by class A sortases. The prototypical class E sortase from Corynebacterium diphtheria (named Cd-SrtF) is a non-polymerization sortase that is not required for pilus polymerization, and proceeds to complete the assembly process by anchoring the polymer to the cell wall peptidoglycan. Moreover, in Streptomyces coelicolor, one or both of Staphylococcus aureus SrtA homologs may function as class E sortase responsible for the cell wall anchoring of the long chaplin proteins (ChpA-C) containing an LAXTG sorting signal, which presumably mediate aerial hyphae formation. The family also includes some class E sortase homologs from Gram-negative and Archaebacterial species, but the functions of these enzymes are unknown.	2.47325e-48
NZ_CP050974.1\|WP_168491967.1\|4667564_4668545_-\|hypothetical-protein	gnl\|CDD\|366960	pfam02182, SAD_SRA, SAD/SRA domain. The domain goes by several names including SAD, SRA and YDG. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix.The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA.	6.42973e-35
NZ_CP050974.1\|WP_168491940.1\|4649593_4650466_-\|2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|237888	PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional.	7.43206e-129
NZ_CP050974.1\|WP_168491953.1\|4656932_4658012_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	2.04052e-100
NZ_CP050974.1\|WP_168491947.1\|4652244_4653369_-\|TIGR03364-family-FAD-dependent-oxidoreductase	gnl\|CDD\|132407	TIGR03364, putative_secreted_oxidoreductase, FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.	1.11884e-112
NZ_CP050974.1\|WP_168491965.1\|4664279_4665299_+\|hypothetical-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	0.000267335
NZ_CP050974.1\|WP_168491936.1\|4647669_4648752_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|237887	PRK15046, PRK15046, 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional.	1.01942e-170

>NZ_CP050974.1|WP_168501052.1|4658047_4658497_+|heme-degrading-domain-containing-protein
MTELESQERQLVLPHFTYDDAWTLGTLLVSMAREAAAPVAIDIRRGGQQLFHAALPGSTPDNDAWIDRKRRVVERYGCSSLLVGTRFRAKGTTFEASSRLDPDTYAAHGGAFPLSVEGAGVIGTVVVSGLPQLEDHAMVVKALHQFLGR
>NZ_CP050974.1|WP_168491953.1|4656932_4658012_+|Gfo/Idh/MocA-family-oxidoreductase
MTGTPPLRVALVGYGLAGSVFHAPLIATTEGLALDTIVTSNPERQEQARAEFGDGVSFAATPEELWARADELDLIVLASPNKTHVPLATAALKAGLPVVVDKPLAGTAAEARELAALADERGLLLSVFQNRRWDNDFLTLRKLLDEGELGDVWRFESRFERWRPQPKGGWRESGDPAEIGGLLYDLGSHVVDQALVLFGPAASVYAETDVRRPGAQTDDDTFIAITHTNGVRSHLYVSATTAQLGPRLRVLGSQAGYVKYGLDPQEADLREGRRPGATAEWGVEPESLWGRVGSGESPLTGGGRPEPTLPGAYPAYYAAIAAALRDGAPNPVTAQEAAAALDVLEAARRSATEGTAVSL
>NZ_CP050974.1|WP_168491951.1|4654378_4655437_-|hypothetical-protein
MRLRKTSPLALTAVAPALGLGLAPPPAAQALTPLGPSASPRPTCAAPDTRAFPIKTRIHGGPDAYDVGGDFRTWYIDLTNTTAHTCGNIHPIVVLVDSKRVLRPEQTHLEFYEGERTHPVEFEKSDQDENVGAFDDGFPGFTVGPGRTLTVKVRLSVTSDAAVPNDVVANAAVVQRHNNDGDWVGESNAYRFRIDGESKTSDGDVVDAGGTGGTGGTGGTGGTGDGGDGGGSGGAGDGGGDGGGGGGTSAAPDASGTGTGSSTGGSTGGVTGTGTGTSSPTGAGDGSDGGDGGRDGGDHDGDAAGKERDGSSSADELAMTGPRGAALAVGATLLAAGGVLLAASRWSRSRRR
>NZ_CP050974.1|WP_168491949.1|4653571_4654330_-|UTRA-domain-containing-protein
MDYPNDQSPGAPVRSGIPEHGRIPKYYAVKAHIAVLIEELGEGGPLPTERDLAEKYEVARETVRQALRELLLEGKLRRHGRGTVVAGPKLEQPLSLASYTEGVRRQGRTPGRTLISLDRFPCPQALATEAGLTRGEPVWHMERVLLADDERVGLESTYVAVARVPDLDRDFDPDSSFYAYLHDRLGIAFGDADERIETVLATPREALLIGTPPALPMLLIHRVSRDTKGRPLERVRTLYRGDRFSFTAHLGG
>NZ_CP050974.1|WP_168491947.1|4652244_4653369_-|TIGR03364-family-FAD-dependent-oxidoreductase
MRVIVVGAGVVGTLHAWHAVERGHEVVQIEREAEARGASLRNFGQIWVSGRAGGEELETALRARELWGEIGARVPGLGFRACGSLTPVRNPRELAVAEAALAREDAAARGYKLLTADEARAVNPALRGAFEAALFCERDAAVEPRTAQLALRAELSKSPNYTFLPGREVRDVVGEHAVRDDHGDVHTGDVVVLCTGAWLGGLVRELAGAELPVRRVRLQMMQTEPLGEPLTTSVADADSFRYYPAYRSPALDELDAHQPQAPIAAAHRMQLLMVQRADGGLTIGDTHEYEHPFAFDTLEDPYDHLTEVVESFLGRPLPRIRRRWAGVYAQCTDPGRVVHRQRVRDGVWLVTGPGGRGMTCSPAIAETTANELGW
>NZ_CP050974.1|WP_168491945.1|4651528_4652239_-|HAD-hydrolase-like-protein
MTEDIRLVVLDMAGTTVADGGLVEQAFAVAAGELGVEPGSADHAEKLDHVRATMGESKISVFRHLFGEESLARRANAAFEKAYGELVDGGRLAPIAGAREAIEELQAGGRTVVLTTGFARVTQDAILDALDWQGLVPLTLCPADAGGRGRPYPDMVLEAFLRTKAAEGVQQVAVVGDTSYDMLSGVRAGAGVVAGVLTGAHGDEVLRAAGAGHVLGSVAELPALLGAHATARGAGR
>NZ_CP050974.1|WP_168491942.1|4650458_4651532_-|ATP-binding-cassette-domain-containing-protein
MSGGSGIRFDRVSVAYDGTTVLDSLDLAVEPGEVMALLGPSGSGKTTALRAVAGFVRPAVGRVFIGDRDVTALPPHRRGIGMVVQQYALFPHMRVEDNVAFGLKAQKAPKGEMRGRVAEALEMTGMAAYARRYPRELSGGQQQRVAIARALAIRPGVLLLDEPLSALDARLRSGMLAELARLHRELPDVSILYVTHDQVEALTLADRIAVMDKARLQDVGTPQELYRAPRTEFTASFVGNANLLPVTVGAAGVNFAGAELKVPTGGAVEGASATLCVRPHLVGLGEGPNALTGSVAEVQWRGATHRLYVDVGGHRVKTDLRELRHPPALGDEITVHFAPEDAVLLSAGVAEGVSRDG
>NZ_CP050974.1|WP_168491940.1|4649593_4650466_-|2-aminoethylphosphonate-ABC-transporter-permease-subunit
MASAAVAAPAKATSKSRTGLPSWAWALPPVAVLGVVFLYPLALVVQQSFRPDTGGTSAQAYGDVFASSAFREALGTTVWLALGSTVGCLVLGFVLALVIAFVPFPGGKAVARFIDVFLSFPSFLITLALLFIYGTVGMTNGMWTDVTGAAEGPFQFLTTPWGVLLAEITYFTPFVMRPLLAAFAGIDTAQLEVASSLGARPARIVRQVILPEALPALAAGGSLVLVLCLNEFGIVLFTGAKGVTTLPMLVYSKAILESDYPGACVVAVVNVLVSVGLYGLYRVVSRRAGA
>NZ_CP050974.1|WP_168491938.1|4648809_4649607_-|ABC-transporter-permease-subunit
MLVHSRKGKWATWAVFFLLFLPLFALPLLVVLAASFATNWSSALPSGFTTGHYTAATRGASLQALTTSLVTAVTASLLALVVGTWAALAAHALKRRGRRVLDALFMLPVAVPSVVVGLAILVAFSKPPMLLNGTRWIVILAHTVLVTAFAHQSVSAALARLDPVYEQAAASLGARPSYVLWRVRLPLLLPSLTAAAGLCFALSMGELSATMMLYPPDWTPLPVQIYAASDRGALLTGSALAVVLMTTTVLVLFAVSRIRTKASYR
>NZ_CP050974.1|WP_168491936.1|4647669_4648752_-|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPRNLHRLGPIAAVVGSLALAATLTACGGDTAASDAKVVTVYSADGLKGENGDGWYDQVFKDFEKQTGIKVKYVEGGSGEMVQRAVREKSNPQADVLVTLPPFIQQADGKGLLQKYTPKGSDQVAGGDKAADATWTCVVNNYFGFVYDKKELKQAPTTWDELLDARYKNRLQYSTPGVAGDGTAVLVKAIHDFGGKERALAYLKKLQANNVGPSASTGKLAPKVDKGELLVANGDVQMNYAQSKDMPNLGIWFPKATDKAADAGKPTTFALPYAAGLVTKAPHTDNGRKLLDFMLSAKAQQQVSEIGGGFSARKDVKATDANAIALTKLMDGVALFEPDWVDIDKNLTSYVEDWKTATGS
>NZ_CP050974.1|WP_168491955.1|4658701_4659559_-|fumarylacetoacetate-hydrolase-family-protein
MKLLRVGTAGSERPALLDAEGILRDLSGVVPDIDGALLADDAALGRVRAAAESGELPVLDADGLRVGPPLARIGKIVCIGLNYHDHARETGAEPPAEPVIFFKAADTVAGPDDTVLVPRGSVKTDWEVELAVVIGRTARYLESHEEALARVAGYAVAHDVSEREFQIERGGTWDKGKNCETFNPLGPWLVTADEVSDPQDLSLKLWVNGELKQDGTTAEQIFSVAEVVRYVSQFMTLYPGDVINTGTPAGVALGQPEPKPYLRAGDVVELEIGGLGRQRQEFKPA
>NZ_CP050974.1|WP_168501053.1|4659684_4660392_-|membrane-protein-insertase-YidC
MSAFAGLVERLADLLEPLFHASAAAAAIVLFTALVRLLVHPLSRAAARGQRARAALQPRIAELRNKYRKDPERMRKAVLELHEKEKVSPLSGILPGLLQLPAFFLLYHLFSSSTIGGEANELLGHQLFAAPLGERWVDALGSGGVFGAAGLVYLGLFVVVGAVATFNYRRTKRTMAASAPAAGGAEVPGLGAVSAFAPFLSFFTLITVAVVPLAAALYVVTSTAWSAVERAVLYP
>NZ_CP050974.1|WP_168491957.1|4660607_4660934_-|hypothetical-protein
MVRSSANARNLRPVALLLVLLLELAVLDAGSLPAAVAVAFTATAAAGAALAICALVGSRRASAVPRTRVRTAIRDREHRTAFLPQRDPDASGRPRPRAPGRALLTAAA
>NZ_CP050974.1|WP_168491959.1|4661010_4661538_-|helix-turn-helix-transcriptional-regulator
MALGKDYATQECSIASALEIVGERWTLLVVRDALYGVRRYNDFLVHLGIPRAVLASRLQALTAEGILEKRRYQESPPRDEYVVTDRGIALWPTLRSLGRWGREHLGEARLRYFRHATCGTELGPYGECATCGTVVPVSDVEMVPGPGLDPDPADPVSRALLKPKRLLEPIDTGHA
>NZ_CP050974.1|WP_168491961.1|4661671_4663078_+|MFS-transporter
MSQLDHATTAKASSAPPGTPLETPSRATATLAVTSAATAVALMTYTAPMVTLPDTAAALHTPVSAQAWLLNGTPLGLAALLLVAGSLADDYGRRRIFLSGTVALGITTALGALATSTWLFTLARVAQGAASAAILASSLGLLVHAFPTARGRLHATGVWGAFVSGGIALGPLLAGAIAQTLNWRIAYAVLGAAALLVALLGTRALTESRASRGGRPDLAGAFTFGLALVALVAALTLGRDGWLRPSVGLLLAAFAVLTTAFAFVEHRTRTPMIDLSLLRHRRFLASSASGLFTGLAVIGLFSFLPALLQQTLGLSALDTAWLFLLWSGLSFGVALQARRLAGRISPRHQLALGFALHAAGVLTMLGALDAGSWTRLLPGFLVSGVGSGLLNAALPLVAVESVPATRAAMGSGAQQTFRYIGSCAGVALTIAIVTSTGGLAHGADIAIAVSAGLALVAGASVLALRERG
>NZ_CP050974.1|WP_168491963.1|4663251_4664091_-|class-E-sortase
MWAPGIVRRGLGAPGVVDHGTRRRRAAYRRVVWGGGEVLVTAGLLLLLLVVHQLWWTNRQAREGAERKVQALEKGWGSGEEEGKGEGQGQGAGVSGAGRVSGAPAGGGASSGRGSGASTGSGQAQGTPRSSQAYAVLSIPRLGLRVPVAEGVSKRDVLNKGYVGHYPHTQQAGQAGNFALAGHRNTHGEPFRYINRLRRGDEIDVETAAGRYVYVVDKTLAQTSANDGGVIREVPRSTVRPAYGYSAPGYYITLTTCTPEYTSRYRLVVWGTLTSMRPR
>NZ_CP050974.1|WP_168491965.1|4664279_4665299_+|hypothetical-protein
MRPDTSAEHVDHNAEAARLERTAGLYPEDAEHLLVQAAAHLELAGDRPGATALYDRLLSSSTPLEHPHLVRALKASNLWEYGHEAEARAIIDGIRAASPRDPAPWVIVAEALESHDELEAAQETFTQAAQLLLTETSEPPYSTHPLLFGRHRVRRMLGAAHDNWDTLADTLHSSPVSLDELHDPKRVWSLGSDNPAELQAEISRLRAELGTFREALSRPFPVAILHWPTTELTELLTAYPTLSSEYPSHEEHLATIEASLRELATSGTPNLGIVTGTVPSYEAFAASEASSPSDATLLPQYATTLAARGLAVAWPPQRGVECWCGSERGYGECHGTTAE
>NZ_CP050974.1|WP_168501054.1|4665653_4667117_+|phosphate-binding-protein
MDTTARDERALPYAGVLHQMQRANGGPLRDPSFVLLRIENSGWAPIVENSYLAPDRGHAGIQVKCRGRRVVGMVVTELSRNELRGFFTPSSDDQHPTPRVPGLGVTDGVIELPKVKLNRGDHYKVLAVLEREESFTDEEFPEPEVVASIVGGVRRGKIKKTEYYPFASKPVRWVLALLVMVSAVQSILTFTRHDATAAPLDCATGTLTLSGSTAFAPVLQEAAKQYHRTCPDAFIPITDDTFHGSMSGLDALAAAGRKAKPTGSQGLGDRLTFSDGPKSDGRPQLLPRPVALSLFALVVNKDAGVQDLSLKQIRDIYAGKITNWIQVKGNNVPIHLVSRNPSSGTRTTLERQILDNKPLLAVTANDCTALDENKPGRCEVSDTETLLGTVASTPGALGHSEVGAATAHDDVQQIRIDGYPATLEGADEGAYPYWQTEYAYTYGEPPANSLAAGFLRYLANEVGKDIIRSHGDRPCTELAKPLLCRPS
>NZ_CP050974.1|WP_168491967.1|4667564_4668545_-|hypothetical-protein
MIGYVEGVGPGSFFKGRRELFDAKMHSDLQRGISRIAGKDGSWVADAIVLNGGYEDDADDWYSVRYTGASPDKDKCEEHGVTKLMCSQSWTYRDNAALKLSFERGHPIRVVRGYEGDKRYSPGKGYRYDGLYAITDSRMAISKSPAPNGSLVEICQFDLERLPDSLQEVTGLELHVIEALKQEEEKRDEEAEKYPGVRSSWVQRLVRDSGLTRRVKKLYDHECQICGLRLLGPDGKPYSEGAHIKPLGKPHFGPDVEPNVLCLCPNCHVLLDIGAIAIEDDWSIVMRSGLFGVNLREKLNRHRTHKVHLDYVRYHRKQWKNQDGPS
>NZ_CP050974.1|WP_168501055.1|4668787_4671868_+|DUF3427-domain-containing-protein
MEEQIAQLEAAGWKAIDAAVSEESSSHVLARHLGQAIGRRLGQLPPNKRVALANQIIESLASDPSGLTGSDPVELIAEGPRQLLALAEQEAPGVYAVRPLTPLSETALITNSPEDPSLGSELRAELATADRIDLLCAFVKWYGLRVLEDSLRAAKERGVRIRVITTTYIGATDRHALDRLVRDFGAQVKVNYEIRSTRLHAKAWLFRRKSRFDTAYVGSSNLSKAALLDGLEWNVRLSSVTTPAVLSKFEATFDAYWNDSAFELYDPDKDGERLDRALAQASGSDPSTDLKINLSGLEVRPFPHQQDMLERLHVERAIRGRNRNLLVAATGTGKTVMAALDYRNLRKQLGSEDPTLLFMAHRKEILKQSLRTYREVLDDASFGELLYTGEDPRDWNHVFASVQSLNVQRLEQIATDHFDIIVIDEFHHATATTYRRVIDHFKPKQLLGLTATPERMDGRNVQDEFFDGHIAAEMRLWEALENDLLCPFHYFGIPDGTDLTNLTWQKGAYTDRDLDTVYTGNHARARIVVKQIRDKISNPGAMRALGFCVTKTHANFMADFFRKAGFQATALDSDSTAEVRARALTDLRDGKLQVIFSIDLFNEGLDIPDVDTLLLLRPTNSATVFLQQLGRGLRRAETKPVLTVLDFIGQHRAEFRFEEQFRALTNLSRNRLVDHIERDFPQLPSGCRIILEGKSKDLVLDNIRAQLGATVKTLVKEVKVYNTSRLADYLHESRREIKEIYKSDNSWTTILRRTSFLDEPAPSGETDLLKRVHAFLHVDDPDRARAYLRLLADDAVTYDSLNPTDQAYAHMLFFNLWDNAGGFTSFQQGLESLRAQRVVRDELRQVLSYVIERSDHFPIPLSGHHSHIPLKVHSSYNRSEILAALGVARFGGQMPRSFAQGVQWVEEIQTDALLITLEKNEKDFSPTIRYKDYALSPTLFHWESQNTTAENSGTGLRYQRHKREGSNVLLFMRRYKNSDIGKSQPWILLGPATYVEHTGSKPMAITWQLKHELPADVWTYSTITTG

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Crispr_ID: NZ_CP050974_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_8

5844526-5844620

Orphan

Consensus_repeat	Method
GGCTACCCCGAGGGCTACCCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_8

>merge|NZ_CP050974|8|5844526-5844620|CRISPRCasFinder
GGCTACCCCGAGGGCTACCCGGACCAGGCCGTGGGCGGCTCGGGCTACCCGGACCAGGGCATGGCCGACGCCGGCTACCCCGAGGGGTACCCGGA

>NZ_CP050974|8|8|5844526-5844620|CRISPRCasFinder
GGCTACCCCGAGGGCTACCCGGA	CCAGGCCGTGGGCGGCTCGGGCTACCCGGACCAGGGCATGGCCGACGCC
GGCTACCCCGAGGGGTACCCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168493550.1\|5846887_5848603_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270875
NZ_CP050974.1\|WP_168493560.1\|5852903_5853998_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP050974.1\|WP_054236452.1\|5828533_5828845_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_075031480.1\|5830372_5831404_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|376473
NZ_CP050974.1\|WP_168493558.1\|5851959_5852577_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_CP050974.1\|WP_054236451.1\|5829081_5830203_+\|peptidoglycan-bridge-formation-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
NZ_CP050974.1\|WP_075031515.1\|5853994_5855068_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP050974.1\|WP_168493544.1\|5840297_5841764_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131739
NZ_CP050974.1\|WP_168493535.1\|5836283_5837015_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP050974.1\|WP_168493538.1\|5837060_5838143_+\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NZ_CP050974.1\|WP_168493546.1\|5841986_5844431_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168493554.1\|5849359_5850304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274904
NZ_CP050974.1\|WP_168493542.1\|5839642_5840170_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370723
NZ_CP050974.1\|WP_054236436.1\|5851492_5851843_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP050974.1\|WP_067376675.1\|5856272_5856782_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224760
NZ_CP050974.1\|WP_168493540.1\|5838267_5839530_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP050974.1\|WP_168493556.1\|5850487_5851450_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP050974.1\|WP_168493562.1\|5855407_5856124_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP050974.1\|WP_168493533.1\|5831523_5833035_-\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|227937
NZ_CP050974.1\|WP_168493552.1\|5848631_5849363_+\|RNA-polymerase-sigma-factor-SigM	unknown	unknown	gnl\|CDD\|236604

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168493550.1\|5846887_5848603_+\|serine/threonine-protein-kinase	gnl\|CDD\|270875	cd13973, PK_MviN-like, Pseudokinase domain of the peptidoglycan biosynthetic protein MviN. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This family is composed of the mycobacterial protein MviN and similar proteins. MviN is an integral membrane protein that is essential for growth and is required for cell wall integrity and peptidogylcan (PG) biosynthesis. It comprises of 14 predicted transmembrane (TM) helices at the N-terminus, followed by an intracellular pseudokinase domain linked through a single TM helix to a carbohydrate binding extracellular domain. Phosphorylation of the MviN pseudokinase domain by the PG-sensitive serine/threonine protein kinase PknB recruits a forkhead associated (FHA) domain protein FhaA, which modulates local PG synthesis at cell poles and the septum. The MviN pseudokinase forms a canonical receptor kinase dimer.	1.75028e-61
NZ_CP050974.1\|WP_168493560.1\|5852903_5853998_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.80058e-70
NZ_CP050974.1\|WP_168493542.1\|5839642_5840170_+\|hypothetical-protein	gnl\|CDD\|370723	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076). This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.	7.36401e-07
NZ_CP050974.1\|WP_075031480.1\|5830372_5831404_+\|alanine-racemase	gnl\|CDD\|376473	pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain.	1.32768e-08
NZ_CP050974.1\|WP_054236451.1\|5829081_5830203_+\|peptidoglycan-bridge-formation-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	2.55381e-33
NZ_CP050974.1\|WP_075031515.1\|5853994_5855068_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	4.49078e-86
NZ_CP050974.1\|WP_168493544.1\|5840297_5841764_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP050974.1\|WP_168493535.1\|5836283_5837015_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	6.75005e-19
NZ_CP050974.1\|WP_168493538.1\|5837060_5838143_+\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NZ_CP050974.1\|WP_168493554.1\|5849359_5850304_+\|hypothetical-protein	gnl\|CDD\|274904	TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor. Members of this family are the anti-sigma-R factor RsrA, which contains a CXXC motif as a thiol-disulphide redox switch. It interacts with sigma-R. It regulates and is regulated by the mycothiol system, which occurs in many actinomycetes. [Transcription, Transcription factors].	0.000243472
NZ_CP050974.1\|WP_168493558.1\|5851959_5852577_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	3.60402e-05
NZ_CP050974.1\|WP_054236436.1\|5851492_5851843_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	6.82529e-47
NZ_CP050974.1\|WP_067376675.1\|5856272_5856782_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	6.10403e-43
NZ_CP050974.1\|WP_168493540.1\|5838267_5839530_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.22567e-38
NZ_CP050974.1\|WP_168493556.1\|5850487_5851450_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	1.11987e-153
NZ_CP050974.1\|WP_168493562.1\|5855407_5856124_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	5.24863e-69
NZ_CP050974.1\|WP_168493533.1\|5831523_5833035_-\|DUF2029-domain-containing-protein	gnl\|CDD\|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	2.48032e-38
NZ_CP050974.1\|WP_168493552.1\|5848631_5849363_+\|RNA-polymerase-sigma-factor-SigM	gnl\|CDD\|236604	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed.	7.46236e-95

>NZ_CP050974.1|WP_168493546.1|5841986_5844431_+|hypothetical-protein
MAEAADFQGMSPSPARRWLRRTGTLLAGAPLLAGVLQLPASPAAHAAQTAAVADATGSGTVDVSLDSLTPSAPTDGDTITVSGSVTNKGKQTVTGAHVGLRVGPTLQGRVAIDDAEKRTGFQLGPDPLEVGGKYVEKFSKLAAGVSQHFSISVPVKDLNLDSDGVYQLGVSLTGQTAAQPWDQVLGIERTFLPWQPAGADTKTKTTYLWPLISTVHLRAETGSDAQQTPVFQNDDLAKEISPGGRLDQLLSLGSDLDVTWVLDPDLLASVDAMTRSYQIKNGDTTTAGKNQAVAKAWLDKLEKTVADKEKDVVALPFADPDLASLAHNGKDVTGSLSHLKDATDVASSTVQTILHVKPNTDFAWPAEGAVDPSIVKVATSAGADKVIARSDSLRETGGLTYTPTAARPIGGGTTAVVADSRLSTAFEGDMAKADNSTLAVQEFLAQSLMVDLQEPSKQRSIVVAPQRTPSVSQAQTMATAVRALQDGNWSDSQKLSAAAKAKPDPSATTKVPSASSYPSSLREQELPRSAFEQIRRTQGMLDNFKVILTDKSRVVTPFGRAIDRGMSTSWRGRADQAATFREGVEFYLDDLAGLVRLIDKSDAKLSGRSATIPVTVQNNLVQGVHHLVLRLTSQQPTRLKIGDDAFDERPIQVAGEHSQSVKFTTSAKANGPVTVVAQLFTDDGQAYGPPVKFEVKVTEITPTVMLVIGGGVLLLVLAGFRMYTQRKRAAARQAEEEQENTPDTEGGAEALNGVNKDAEGAVDTTEDTERSKDGPDGESTTESGADDPEHPSDPTPDTAPESTDPSGTGERVDR
>NZ_CP050974.1|WP_168493544.1|5840297_5841764_-|CCA-tRNA-nucleotidyltransferase
MPNANEDNPSALSQVQRRAVSELLRVSPVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPDDVLKIVRPWADAVWEVGIAFGTVGAQKDARVDDVQQSFQIEITTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKAFIDPYGGLDDLSARALRTPGTPEESFSDDPLRMMRAARFAAQLDFEVAPDVVAAMTDMAGRIEIVSAERVRDELNKLILSAHPRKGLTLLVDTGLADHVLPELPALRLERDEHHRHKDVYDHTLIVLEQAMALEENGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHHHEMVGAKMTKKRMTALKYSNDLVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHKLTRSDCTTRNKRKATVLSQAYDGLEERIAELQEQEELDAIRPDLDGNQIMEILGIGPGPAIGQAYKFMLELRLENGPMEHDAAVTALKEWWAEQG
>NZ_CP050974.1|WP_168493542.1|5839642_5840170_+|hypothetical-protein
MTTPPPQGQNPFAQGQQPYGQPPQGQAPYGPPPQGYPQQPGYPQQPGQPGFPQQGTVPYAPVPPQRPKRGVKWYLRIVLAVAGLSVIVGGLVLNNDSEDAKKLAVGDCLYNKGTANDPDVIQVDCTDAKATHKVLKKADGASLPSLTCQNVTGTTATLTWKETGESFTLCLGSNK
>NZ_CP050974.1|WP_168493540.1|5838267_5839530_+|MFS-transporter
MAVVRDLRVLLRFQGFRRLLGVRLLSQGADGVYQVALAAYVVFSPEKQTSAASIASAMAVLLLPYSLVGPFAGVLLDRWRRRQVLLYGNLLRTALACVTAVLMLSHVPDWLFYASALCVTAVNRFVLAGLSAALPRVVDSHRLVMANALSPTAGTLAATAGGGLAFVVRLVASDSDAAVVLLGAALYLCAALASLRMAPELLGPDQELVQPSLRTALTGTARGLAAGVRHLAEPARREAAWALLSMTLMRFCYGALTVMVLMLCRYAWSSGSDGGLALLGLAVGISGAGFFVAAVATPWAVGRLSPGGWIAACAATAAVLEPALGLPFEAAPMLAAAFILGLTTQGAKIATDTIVQSSVDDGYRGRIFSVYDVLFNVAFVGAAAVAALMLPPDGRSALLVVTLAAVYAAIAVAMARFEMQ
>NZ_CP050974.1|WP_168493538.1|5837060_5838143_+|inositol-3-phosphate-synthase
MGSVRVAIVGVGNCAASLVQGVEYYKDADPAAKVPGLMHVQFGDYHVSDVEFVAAFDVDAKKVGLDLSDAIGASENNTIKICDVPNKGVTVQRGHTLDGLGKYYRMTIEESAETPVDVVQILKDKQVDVLVCYLPVGSEDAAKFYAQCAIDAKVAFVNALPVFIAGTKEWADKFTEAGVPIVGDDIKSQVGATITHRVMAKLFEDRGVRLERTMQLNVGGNMDFKNMLERDRLESKKISKTQAVTSQIPDRDLGEKNVHIGPSDYVAWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDALRAAKIAKDRGIGGPILSASSYFMKSPPVQYFDDEAFANVEKFIKGEVER
>NZ_CP050974.1|WP_168493535.1|5836283_5837015_+|PadR-family-transcriptional-regulator
MSRRSGILEFAVLGLLRESPMHGYELRKRLNTSLGVFRAFSYGTLYPCLKTLVASGWLIEESGSTTEDALAAPLAGRRAKIVYRLTAEGKEHFEELLSQTGPDAYEDEHFAARFAFFGQTSRDVRMRVLEGRRSRLEERLEKMRASLARTRERLDDYTLELQRHGMESVEREVRWLNELIESERAGRDVKDSASEGTSQGVSEGSSPGAFEGSAQQNSTSGETGGLPRHRDQSRPDPSDDTTT
>NZ_CP050974.1|WP_168493533.1|5831523_5833035_-|DUF2029-domain-containing-protein
MPSAETTRTSVREPEPVRPTKDDEVAVAGSELIGGPIGRRALLGASWWTPVRVIALVAIGMFALGMVQKLPCYDSGWFFGASTQYTHACYSDIPHLYQGRGFADGLVPYFDKLPGDMDYLEYPVLTGLFMEVAAWLTPGGGSIQHQEQIYWMVNAGMLMVCAAVIVVCTARTHRLRPWDGLLVALAPAFALTATINWDLLAVALLAAAMLMWSRGRSLAFGILLGLATAAKFYPFLLMGPLLVLCWRAGKWREFGNALMGAVGAWLVVNLPVMYLAPEGWAKFYSFSQTRGIDFGSVFLFISTWWKIPISYQTANAWALVMMLLVCVAMATLALTAPRRPRFAQLAFLIVAAFILTNKVYSPQYVLWLIPLAALARPKWRDFLIWQACEVAYFLGIWMYLAYTTSGDAHKGLSSHGYQFAIAAHLVGTLYLCAVVVRDILMPERDVVRRAGEDDPSGGVLDGAEDVFVLGAAAHPPRHAAHFEGPQVEWGGNGGGPAPEDSSL
>NZ_CP050974.1|WP_075031480.1|5830372_5831404_+|alanine-racemase
MALTLYVDTARWRAHHKQVSEQFPGLVPVCKGNGYGFGHERLADEATRLGSDILAVGTTYEAARIKDWFGGDLLVLTPFRRGEEPVPLPDRVIRSVSSIDGVYGLVGARVVIEVMSSMKRHGVSEQDLPHLHSAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKADELARLQQQFPQTRFRARIGTRLWLGDHEATEYRGAVLDVTRVSKGDRFGYRQQKTASDGWLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAGLATVNRNLSPFVWAGKQRWFAEPPHMQVSILFVPSDATEPQVGDELVAHLRHTTTQFDRIVER
>NZ_CP050974.1|WP_054236451.1|5829081_5830203_+|peptidoglycan-bridge-formation-glycyltransferase-FemX
MSLTLRTISREQHLAYIQSLPAASHMQVPAWADVKAEWRSESLGWFDERTGGMVGAGLVLYRQLPKIKRYLAYLPEGPVINWYAPNLDEWLQPMLAHLKQQGAFSVKMGPPVIIRRWEATSIKGGIQNPDVKRLRDIEADFIEPRAFEVADKLRRMGWQQGEDGGAGFGDVQPRYVFQVPLANRSLEEVHKNFNQLWRRNIKKAEKEGVEVVQGGYHDLEEWQRLYEITAIRDHFRPRPLSYFQRMWSALNTEDPNRMRLYFARRGGVNLSAATMLVVGGHVWYSYGASDNIGREFRPSNAMQWRMLRDSYALGATVYDLRGISDSLDETDHLFGLIQFKVGTGGQAAEYLGEWDFPLNKLLHKALDIYMSRR
>NZ_CP050974.1|WP_054236452.1|5828533_5828845_+|hypothetical-protein
MAQTRPTVAGSLFATDHKPHPLQDTLLAVTLVLGVTALITAAFNSLHLISSWAGLIGIITGASGQFISETTRERFGLILGLGASAVGFFLGMAHGGLFGGIIG
>NZ_CP050974.1|WP_168493550.1|5846887_5848603_+|serine/threonine-protein-kinase
MAERSTAAVDVADNSGDEPLTAKAGQSTSDGVAQNRERETDSEEAQGSGGTESPGKASPPELHSGHKLAGRYRLEECVTRLDGFSSWRAVDEKLRRAVGVHLLPADHPRARSVLAAARSSALLGDPRFVQVLDAVEENDLVYVVHEWLPDATELTALLASGPLEVHEAYQMVSQVSQAMAAAHREGLAHLRLTPSAVLRTSTGQWRIRGLAVNAALRGISSDTPQRTDTEAIGALLYAALTQRWPYDNDAYGLSGLPKGVGLIAPDQVRAGVHRGLSELAMRALANDGATASRHETPCTTPEELVKAIAEMPRIRPPEPAFTAPPEYQRTSYQQGYGRPAPHMGATQPVPAPPPPLQSRTGKALKWAVSALLIAALGLGSWQLADALMERRKSDDTQQTKTPDGNGKDTDKTKPVKPIAIKGAREYVAKGDAQAPGDVDKTYDGDSSTYWRSKSFVDGPEMKPAFKPGVGIVYDLGSQQTVTAASIGLRYPGDHTTITLYGTDSMSPSASVDSMTKIGTITTSGTSAKITVSKKAKTQYVLLWITAMPYASGDQYSGAGYKQAITDVKFTS
>NZ_CP050974.1|WP_168493552.1|5848631_5849363_+|RNA-polymerase-sigma-factor-SigM
MADETEYGDASDQDLLARHVAGDPEAFGEIVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTFRGQSAVTTWLHRITVNACLDRARKAASRKTSPVDDTERLEQLLEPHESASAPAERNDLHRELLTALSTLPADQRAALVLVDMQGYPVAEAARVLDVPVGTVKSRCARGRARLLPLLAHLRADNGSGGGGNKSGGGRNRTQGASVPPAAGPHDAGPRDAGPSDSAAVKGGGGRA
>NZ_CP050974.1|WP_168493554.1|5849359_5850304_+|hypothetical-protein
MTSTTDTAGHPDVAEISDLSEGLLPPSRTADVRRHLDECVLCADVYDSLEEIRGLLGTLPGPTRMPDDVAGRIDAALAAEALLSATAPDREAAEDDRASVSRETSVAGVSHTSGDPSPASLTDRPSGRPHAATGPGRSRRGRRGRRRVVVLGTVFTAAALGLGAILVQSLGDGSGKSPQTVTQQGAKDTFSEGELKTQVADLLAKNRSASTPSASPKHPWGVQSNDAGNGSAGVDTLITPTVQVPDCIQKGTGSSAAILAAQQGTYKGTTVYLVVVPDASDSTKVTAYIVEAACVKQASASPGKLLLTHSYARS
>NZ_CP050974.1|WP_168493556.1|5850487_5851450_+|thioredoxin-disulfide-reductase
MSDVRNVIIIGSGPAGYTAALYTARASLKPLVFEGAVTAGGALMNTTEVENFPGFQDGIMGPELMDNMRAQAERFGAELIPDDVVAVDLTGEIKTVTDTAGTVHRAKAVIVTTGSQHRKLGLPNEDALSGRGVSWCATCDGFFFKDQDIAVIGGGDTAMEEATFLSRFAKSVTIVHRRDTLRASKAMQERAFADPKINFVWDSEIASIEGDPKLAGLKLRNLKTGEISDLAVTGLFIAIGHDPRTELFKGQLDLDEEGYLKVEAPSTRTNLTGVFGAGDVVDHTYRQAITAAGTGCSAALDAERYLAALADSETAAAATV
>NZ_CP050974.1|WP_054236436.1|5851492_5851843_+|thioredoxin
MAGTLKNVTDDSFEQDVLKSDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDQIEVVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFITEGAEKTV
>NZ_CP050974.1|WP_168493558.1|5851959_5852577_-|GNAT-family-N-acetyltransferase
MGRRLVPLTLDNLPDLPKRCRACVFWELDPVSGEAVVKAGRPELEKEAWISAVLLEWGSCGRVVYVDDVPVGFVLYAPPAYVPRSTAFPTSPASPDAVQLMTAFIMPGYQGQGLGRVMVQTVAKDLLRRGFKAIEAFGDARWKEPACVLPADHLLAVGFKTVRPHPRYPRLRLELRTTLSWKEDVELALDRLLGAVQKEPALRPL
>NZ_CP050974.1|WP_168493560.1|5852903_5853998_-|ParB/RepB/Spo0J-family-partition-protein
MSERRRGLGRGLGALIPAAPTERAVPSPTGGSSASSAAVPVLTAERGVAAAKVTTLPPVSHETEESSAIGTPEVPSEPVGAHFAELPLDYITPNPRQPREVFDEDALAELVTSIKEVGLLQPVVVRQVGPARYELIMGERRFRACREAGLEAIPAIVRATEDEKLLLDALLENLHRAQLNPLEEAAAYDQLLQDFNCTHDQLADRIGRSRPQVSNTLRLLKLSPSVQRRVAAGVLSAGHARALLSVADSEEQDRLAHRIVAEGLSVRAVEEIVTLMGSRPQTAPRSKGPRAGARLSPALSDLATRLSDRFETRVKVDLGQKKGKITVEFASMDDLERILSSLAPGEGGVLQRSLLDDDSEDAEA
>NZ_CP050974.1|WP_075031515.1|5853994_5855068_-|ParA-family-protein
MGGSVHCEPEVEESESLRSDANIAGPMTDPVPGPRTESMGEDVSRETPPPMDDTPIGRAAQLAVEALGRAGEGLPRPEQTRVMVVANQKGGVGKTTTTVNLAASLALHGGRVLVIDLDPQGNASTALGIDHHAEVPSIYDVLIDSKPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLERAIQAYEQPLDYILIDCPPSLGLLTVNALVAGAEVLIPIQCEYYALEGLGQLLRNVDLVRGHLNPNLHVSTILLTMYDGRTRLASQVADEVRSHFGDEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGALSYLEAAREIALRGVGVAYDAQNAHVGVQNSQNMVEGIQ
>NZ_CP050974.1|WP_168493562.1|5855407_5856124_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTEAAELPPAPEQAREVFGDRFADAVRYAELLAETGVQRGLIGPREVPRLWERHLLNCAVLSEVVPEGVTVCDVGSGAGLPGIPLALVREDIKITLLEPLLRRTNFLTEVVELLGLHHVTVVRGRAEEVMGKLPAVHVVTARAVAPLDRLATWGIPLLRPYGEMLALKGDTAEEELKSAATALSKLGAVETSILHVGEGIVDPLSTVVRVEVGESPGGVRFAAKRAKAARTGRTRRRR
>NZ_CP050974.1|WP_067376675.1|5856272_5856782_-|single-stranded-DNA-binding-protein
MTEGTTSAAAEGDTLTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIISDAGSRDLQKLVGRDGEVLEALQELTRLAVHRETGDRSRLMLDIAGYRAKKREELSELGAKAAAEVKSSGEPVKMKPMTPFERKVVHDAVKAAGLRSESEGEEPQRFVVVLPA

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Crispr_ID: NZ_CP050974_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_9

6026325-6026414

Orphan

Consensus_repeat	Method
CGTCCGGCGTTTGAGGACGAGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_9

>merge|NZ_CP050974|9|6026325-6026414|CRISPRCasFinder
CGTCCGGCGTTTGAGGACGAGGCCGAAGGCCGCACCCCACCCGCCCCGGCCCGCGCCATTCAGCTCGTCCGGCGTTTGAGGACGAGGCCG

>NZ_CP050974|9|9|6026325-6026414|CRISPRCasFinder
CGTCCGGCGTTTGAGGACGAGGCCG	AAGGCCGCACCCCACCCGCCCCGGCCCGCGCCATTCAGCT
CGTCCGGCGTTTGAGGACGAGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168493751.1\|6021890_6023336_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270453
NZ_CP050974.1\|WP_168493755.1\|6024622_6024784_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168501172.1\|6012038_6013193_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP050974.1\|WP_168501174.1\|6029302_6031030_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP050974.1\|WP_168493763.1\|6031155_6031857_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168493765.1\|6031853_6032492_-\|SigE-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132028
NZ_CP050974.1\|WP_168493761.1\|6029084_6029306_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273429
NZ_CP050974.1\|WP_010986199.1\|6036780_6036984_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP050974.1\|WP_168493771.1\|6037229_6037508_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168493753.1\|6023313_6024567_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349914
NZ_CP050974.1\|WP_168493757.1\|6024936_6026280_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP050974.1\|WP_168493745.1\|6015643_6016345_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP050974.1\|WP_054234152.1\|6018881_6019226_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168493743.1\|6013280_6014348_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168493747.1\|6016614_6018603_-\|Ig-like-domain-repeat-protein	unknown	unknown	gnl\|CDD\|274824
NZ_CP050974.1\|WP_168501173.1\|6026502_6027027_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP050974.1\|WP_168493749.1\|6019230_6021891_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238738
NZ_CP050974.1\|WP_168493759.1\|6027154_6028993_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224926
NZ_CP050974.1\|WP_168493769.1\|6035076_6035370_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180688
NZ_CP050974.1\|WP_168493767.1\|6032581_6033520_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|240447

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168493751.1\|6021890_6023336_+\|extracellular-solute-binding-protein	gnl\|CDD\|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.77996e-62
NZ_CP050974.1\|WP_168501172.1\|6012038_6013193_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	2.78406e-41
NZ_CP050974.1\|WP_168501174.1\|6029302_6031030_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	4.55601e-82
NZ_CP050974.1\|WP_168493765.1\|6031853_6032492_-\|SigE-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	4.13819e-36
NZ_CP050974.1\|WP_168493761.1\|6029084_6029306_-\|hypothetical-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	3.52552e-05
NZ_CP050974.1\|WP_010986199.1\|6036780_6036984_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.06671e-34
NZ_CP050974.1\|WP_168493753.1\|6023313_6024567_-\|amidohydrolase	gnl\|CDD\|349914	cd05664, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, Uncharacterized subfamily of proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as in the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	4.37461e-175
NZ_CP050974.1\|WP_168493757.1\|6024936_6026280_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.04084e-08
NZ_CP050974.1\|WP_168493745.1\|6015643_6016345_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.09648e-81
NZ_CP050974.1\|WP_168501173.1\|6026502_6027027_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.92767e-14
NZ_CP050974.1\|WP_168493747.1\|6016614_6018603_-\|Ig-like-domain-repeat-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	0.00200033
NZ_CP050974.1\|WP_168493769.1\|6035076_6035370_+\|hypothetical-protein	gnl\|CDD\|180688	PRK06771, PRK06771, hypothetical protein; Provisional.	9.01169e-10
NZ_CP050974.1\|WP_168493749.1\|6019230_6021891_+\|VWA-domain-containing-protein	gnl\|CDD\|238738	cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.	2.53311e-05
NZ_CP050974.1\|WP_168493759.1\|6027154_6028993_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224926	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP050974.1\|WP_168493767.1\|6032581_6033520_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|240447	cd13432, LDT_IgD_like_2, IgD-like repeat domain of mycobacterial L,D-transpeptidases. Immunoglobulin-like domain found in actinobacterial L,D-transpeptidases, including Mycobacterium tuberculosis LdtMt2, which is a non-classical transpeptidase that generates 3->3 transpeptide linkages. LdtMt2 is associated with virulence and resistance to amoxicillin. This domain may occur in a tandem-repeat arrangement and is found N-terminal to the catalytic L,D-transpeptidase domain; this model represents the repeat adjacent to the catalytic domain.	1.25841e-27

>NZ_CP050974.1|WP_168493757.1|6024936_6026280_+|helix-turn-helix-domain-containing-protein
MAERDGPEVIGRRVQQLRTERGLTQKQLAEPAYTPAYISTLEAGRVRASEPALRHIAERLGVAYEEIATGRPAHLATDLRLRLTDAQRTLATGEAEVAAEQYAALLAEADAHGLVAEQAAALLGLGECALETGDLQTARERFEASEQRLGDAPLPNRVPALRGRAVSHYLAGELRYACYLFESTLDELNRTGMHDPDALLLLYTGVIAPYMDMGAHARAAQAAEFALALAPQVADPALVARMHRSVARTMIAEGRVAEADASLAKASELYRQLQIRTELANCHWMRGYLYAQNGELERAEGELREAQAMLSAKRAALYTSQVNVELADVLHRRGKSAEAAILLHEVLGDLSPERGAVHSAGAHRLLGIIAEDARDTESAEEHYVRALSLLERAGAAGDLADLCRLLGDLLRRTGRVEAALDAYRTGLGHRTAPGTTTLGPAPAQPPL
>NZ_CP050974.1|WP_168493755.1|6024622_6024784_-|hypothetical-protein
MLRRISARYFRGFGAAVVAVAALVLAANAGPARAAEATTPHFQNHTGHAVALR
>NZ_CP050974.1|WP_168493753.1|6023313_6024567_-|amidohydrolase
MISPAARIALDLTAELPVPGLEDFYRDLHRHPELSMREHRTAAALADRLRTSGFETVTGVGGTGVVGVLHNGPGPTVLLRADMDALPVQEETGLPYASQEPGVMHACGHDLHVTWLAGAARALAAGRDTWSGTLLVLGQPAEETGEGASGMVADGLYERFPRPDVLLAQHAAPGPTGLYAHSPGLIMSASTDVDIVVHGRGGHGSRPESTVDPVVTAAYLVTRLQTVVSREIAARESAVLSVGRIEAGIRHNIIPAEARIALNIRTQSDEVRERMIAAIRRIAAGECLAAGCPREPDVVVGNSFPVTVNDPETDRRVAAVHGEVFGAGTILDPGPAMGSEDFPRLADGKIPYSYWFVTSTSAEVWDAAPGDDLMEKFAAVPSNHSPHFAPDLATVAPGVRTLVSGALAYLVSPEVPS
>NZ_CP050974.1|WP_168493751.1|6021890_6023336_+|extracellular-solute-binding-protein
MRRRRRTHGRGHGWVHGRLHGRVYGYGLALALLLTACTGGGPSGPGATVSPGASGDIVVASGRDVTGKGGIRQQLIDAWNARQDREHSDVHARLVELPGSADQQRSQLLGALQSGSAQYDVVNLDVTWVPEFAAAHLIRPLPDALVDADVIKSVASMARWGDKLYAVPFNSDVGLLYYRRDYLKQAHVQDTDLSKGIAWRQLRDLTDAVEAPGRSRPKGYEKGWTTQLGPYEGRTVNGIEAFLSAMDGAGLTDEDGRYTATVQQLTDGLAELRARTQGAYTLGDAVRSDEGESLTDFADGRTAFLRHWPYAYRTLHQSLSEAQLGVAPLPGRAVLGGQNLALAGSSQQADKARELIRFLTNKESERCLLDAGFAATRESAYTADDVTCGVARTPGAASPSASPSGESADRMPRDDHGRPAYARTILLPALRRAVQRPRTPLYGAFTQTFATELGRLFSDDPPGDAELAAELDKELRKALPG
>NZ_CP050974.1|WP_168493749.1|6019230_6021891_+|VWA-domain-containing-protein
MDRFDPRGKVNRALLVGVSEYEFTRPKHRDGVPGQLPAVAHNLAVLVRALERGGVLRPLEITVARSPRLADFRHSLRAAADSAEGLLLLYFAGHGAVPSAGDELWLQMRDAEVVRGETAGFEGAARFTNVLRILANSHAERIVVVLDCCNAGNAARVWEAVERPDVRRRVSVLMSVQANNRIDAGDADTPTPFTARLVELLTSGIEGQGDEVHFLALAEALRVHMSTHHRTERGEPWEPQSRTENPPVDVVLGIRAGAGRPVGSRAGAVGAKAVSRPTSGRRRQRAFVARVRAAAARLWSGAVGAGALRPSAPASNRPPGGPPARRVAVVLLVLAAALGLVGYFVVDNAASDRSACGPPVELRLLTDPDLESTVRKAADAYLTSAANTSGGGCRRSGITVYGAGSAAVVAGLRDQSDPWQRPVSDDTDPQRDIGPQPDIWIPGTLATAARARPSGVARTYVTLEPDATPFAYSPMVLSLPQGIAEDSVRDRTGDSLAGLRAKLVRRDKTASMRRTDPEYTDSALLATVGLYGPAKADVGRAEESVAQTGPPAPTAGDLLCALPDNVDTDRSTAALVPEFLMVSGVGCDRTTRTPRMAEYPDDVPGLTPTFVRVRWTGGDSDEAARDDAVRRFHDWLTGTGLAVFGQDGFRAPSGARAFLAAHDSANGLISDPGRPAGAAGAEAMDTALNQYRNAKGPGRVLFLLDSSGSMAGLWQGPGGAPGILKQSLGGLGAQDEYGVWSVASPGRSPYAELLSFGPHKRRDAERALDRAAVKDAEADPYGALKAALDTMAQKGKDDDRPELIVFLTDDEDDNHLTAKGHLDELLTSARTKGVPVVMAALESGGCAKGRPDQRISDASGGRCLDTKVDLVAGLRDEVARTGTGDE
>NZ_CP050974.1|WP_054234152.1|6018881_6019226_+|hypothetical-protein
MAARAIRVRLDGTASDSDVGALKKWLERERPLEQLVKRGDLRIEERAGTDEQGTPMGVGMDIVLVLIGAGAETLFKELLAQVKSAVRAWSDNRGSVENGDPPEARVDPLGPDER
>NZ_CP050974.1|WP_168493747.1|6016614_6018603_-|Ig-like-domain-repeat-protein
MRMRTLPIATAFAVAFSSAALAIGTATTASADSSSILPVMATGDLVVDGVHQHVFVSDPRNGKVVVTDYSGRVVKQVTSLAGVTGLQLSADSGTLYAAARDDDAIVAIDTATLTESVRYPTGAGTEPEYLAAAGNKIWFGYGTSYAGNIGSLDLTGTDPVVALGQDDASHWRDAPRLAATPGAPNALAAGDPVTSSSLLAVYDVAGGTAARTAFIDHNQGQTENLAFTPDGSKVITANSGDRNLVWAASDLSAAGSLPTTHYANADAVADDGTVAAGSDSSYDPDVHVFTPGATSPVRQYDFPNTGHSSGSDLLATGALAWEPGTSSRLFAVTYNSEGVFSLRVMNAPTQSKPALTVSAPASATRAKSLTVSGTLTATLALPAGTPLTVTRTDMESPNGKSLGTKTLGTGGKFSFKDTPPAGGKVKYTVKYAGDATHTPASASDTVEVSRATPTLTLNNNRKVYAYGTDVKFTAHLGSTYKNRTVEIWADPFGSDKPNKLVKSGKVNSSGNLTVTLDLTRDAKVTAKFAGDSRYKSKSVSSTVGAKVKVSTAISGQYKKKSVYGHTYYYFHKSKDPLFTTTMTAYPHRQQRLEMELYYQGTWYDAGTQYFKLSSTGVSRVQLGGTHETGYRMRVRSSYYNGTSGDNVNSTTHGDWKYFIFTG
>NZ_CP050974.1|WP_168493745.1|6015643_6016345_-|response-regulator
MTTPVPFDSPARLLVVDDEEHLRAMLTMAMEFLGFEVTGAATGREALQAVARGRPDLVLLDINLPDLDGFDICRTMRTRGHTMPVLFLTARSDVDDRVRGLDLGGDDFVTKPFELKEIAARVRALLRRTAEHPAERHTLQAGAVRLDVHTHEVWAAGEPVGLTTTEFALLRYLMENPGRVLSRAQIQERVWNHRADGSGIVDTYVYYLRRKLGDAGVPLIRTVRGAGYLLCSD
>NZ_CP050974.1|WP_168493743.1|6013280_6014348_+|hypothetical-protein
MPGTVLLLAASPVGKGCLVDAASVLPVLAAVSPAVLSGTDTANVVELADPLEPQAVLTRLRAAATAPGPLTMFVTGQLQLDRRQRLPHLALARTTPSTVRYTAFPWHWIAEELRLRAPGTTELLVDLHADAETWEHLATSPLTAGRGVGLYGRVAPPPPRRTVASPAYMKALATILRSGRRPELPLLHQQSLARVEAGSGPSGIVLAAPARIPVVPDPHAAITAAAQAGRHGDAAALAARWEQEAARTWGVASEQALHWAEVRADLAMLAGDPVGSCRTWLAIAGHRLDTGQPADAPAVESAVDRAHHQWGQIDDSARAVELGSALAELRLRVPGRRQGALDHVQRHLSRLQAQV
>NZ_CP050974.1|WP_168501172.1|6012038_6013193_+|SpoIIE-family-protein-phosphatase
MLRLSGHSVAWVPPLLLLIAIGLADWNTSGEFRIISWIVLVPGIAAAICGVWTTAVFACLAVVTYVEVDASWQHQYQTGLPDFILVSVGGVLAVIACAVRVRGERRMLHMMDVAETTRRTVLRPMPPGWGGLDHAAVYLPADSEARVGGDFYDIQPGPRGTRLLLGDVQGKGLGAVESAAALLGTFREAAYHEPLLQTVADRLEVRMLRHVGYRTAVGRDDHDRFATAVLVSFPDDTRNTVEFVNFGHEPPLVVAPDGVRILPPGHGLPLGLGELTSDQPLVLTAVLVPGETLLLVTDGVTEARDADGVFFPLLDRVTRALTEDPRTVEPQHLVELVRDGTLRHCGGHLADDTTIFAVRRRGHRRPVVSPNVVPEGTGGGTTQP
>NZ_CP050974.1|WP_168501173.1|6026502_6027027_-|GNAT-family-N-acetyltransferase
MTALLDSDLDRAGAEVGAELTEYFLSDSARWLWRYRLNQLASRPECAGWLAKVVVAEPEGTVVGYAGFHGPPDEAGMVEIGYSVDPGHRRRGYARAILAALMRRAAADARVRTVRVTISPDNAASLATIAGFGFTEVGEQWDEEDGLETIFEIPASEISASEAPVGGSAHSRRA
>NZ_CP050974.1|WP_168493759.1|6027154_6028993_-|MBL-fold-metallo-hydrolase
MTVPARDDLPFDDLTDFENADRGFIAALDPPVITDSEAQIVYDGNAYAFLDEDCPDTAHPSLWRQSQLCARHGLYEVTEGVYQVRGLDLSNMTLVEGKHGVIVIDPLISAECAAAALGLYHEHRGARPVTGLVYTHSHVDHFGGARGVVAHGSESGLPVLAPEGFLKHAVSESVFAGNAMLRRSAFMYGSRLPRAPRGQIGTGLGTITSTGTVTLIAPNVDITRTGQEETVDGVRFVFQLTPGTEAPAEMNFLLPEQRALCVAENASHTLHNVLTLRGAPVRDAHVWARYLDETIDVFGDTYDVAFASHHWPIWGRANVVRFLGEQRDLYAYLHDQTLRMLNRGLTGTEIAEELLLPPALERAWHARGYYGSVSHNVKAVYQRYMGWYDGNPAHLWEHPPTELGRRYVELAGGQTETLVKARAYVDAGDLRFAATLLNHLVFADPSNNAAKDTLAGVYERLGYGAENGTWRNAYLTAALELRAGTADIPVDTTSPELTSALTVSMLLDSLAVRIEGPRAWNEHLTLDLVVIDEQRRHRVNLHNGALTHRAMPVHHTPKPHADLTLTLTRPELLGVVTGRGLAGIESDGDTTVLARLLSYVSEPDKAFPIVTP
>NZ_CP050974.1|WP_168493761.1|6029084_6029306_-|hypothetical-protein
MTKPSAPRRHLPTSPFAAPVVPVAKEFSLGDRVTHDQFGLGTIIGVEEGIAMLVDFGSRQARILSPYSRMDRL
>NZ_CP050974.1|WP_168501174.1|6029302_6031030_-|penicillin-binding-protein
MAGLRRRLVERRIRIRRTRGRRLRRAIVVLLALLANLVGAAVVAYHLTKIPEPHPETAMQSTVFVDDHGDYLGRRGPVDRQEIPLSQVPRYVQEAVIAAENRSFRTDTGISPKAIARAAWSTVSGGGRQGGSTITQQYVKNALLSPQQSLSRKAREALISIKLDRTRSKDEILQGYLNTVYFGRGAAGIQSAARNYFGVDAKDLTVSQGAALASVINIPSYYEKAGSDPKVTAKLVDRWEWVLDAMAHSGAITSAQRAAARFPAFRFYPPGDTDGQRQYLIDAAASEAADRLGITEDQLARGGYTVRTTFDLTAQDATAELAADGTDKKTGEKTAEEKAGGGKGAEAKPTGDVRVHTAVVALVPGDGAVRVLYGGADYAGQPFNDARDGAVEAGTALQPFSGMKLLDPLTDLTRTAAPTPLRLASAYATAAAHGVYATPYTVAKITRAGRTLYEAHPRTRTAMTRADAGMITKFLYSRSGALPATHTGAAGLRTLWQTTYDEHLTLTVALFAEHPAKGKKAALPAPLPYTAGNRSLSVSEGVWSKIVGTAEGHDPAAEPNPGLPTGQTKPILATR
>NZ_CP050974.1|WP_168493763.1|6031155_6031857_-|hypothetical-protein
MKRHRKFPRPSAESEALREVFAEAAYDVTPSAVPLAAIERAGRRRRRRRTAAVAGSACALLVVPLAVVALRGAVSPESGDGQVTSPADLPMATVRVVTAGERVEVAHGIKIWLTEDGAHWSSPADSGPLFSSVKDGADEPGVTVRQEGAGDWGYFLSGVYRGKREAARVEIETTAGQVAGTALTLAGGPHWGVWYAMVSAPKPVAPGRPVDVTRRVTVYDSAGGVTASTGAGR
>NZ_CP050974.1|WP_168493765.1|6031853_6032492_-|SigE-family-RNA-polymerase-sigma-factor
MPHTSSHTSSDAASHAASHAASETPGAPAGNGGFAPYATAAWPRLVRTAHLLTGDLHEAEHLVRTTLARVRARWRRVPRDDVDFYVRRSLVRTHLGRTRRGRAARLLTPFLPERARRAVPVPTEAVARRDALGRALAALPARRRAVVVLRHWEGLGEAEIAQLLGCSAGTVKAHARRGLAALRAHPSLAARLATPSVAPSPARRHPVSGARS
>NZ_CP050974.1|WP_168493767.1|6032581_6033520_-|L,D-transpeptidase-family-protein
MTRRARSRRIAAGWTAAALCALALAGCSKGAVTESAGTEVDTAAKPGTAAGQKPTTQPVKAKPLAKLTGAHINIADGQTVGIGMPISVTFDHAIPTGERAEVERQLKVDADVEGSWSWVKDRNLLEGQRVDFRPRAYWSPGTEVTVRAGSGITRHFTVGRSLVATVDVRTHMMRVVKDGQTRNVPITAGAAGMDTWNGTMVVSDKATKVFMNSQTVGYGDAYADYYYYAVHLTTSGTYLHQNPKANTYAGHQNVTHGCVGLATDGTAKKFYDEVIPGDVVTVVGSKDTVAVGNGYGDWNADWAQWQAGSALK
>NZ_CP050974.1|WP_168493769.1|6035076_6035370_+|hypothetical-protein
MIVFACYAGLEGRLSRNDRGVARVEKKLDRILDHLGLTEVDPELEQVAALAREGKKIQAIKAYREVTGAGLKEAKDAVDRLVRPPPRDLPVLGGQPS
>NZ_CP050974.1|WP_010986199.1|6036780_6036984_+|cold-shock-protein
MATGTVKWFNAEKGFGFIEQDGGGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQKGPQAENIVPA
>NZ_CP050974.1|WP_168493771.1|6037229_6037508_+|hypothetical-protein
MRCVIARFPFDLIKSEVEHSMAGREPEPVTSASVVIGPHTYPVKQVGEVITKQDRRDFTEVEVARALTRLGFVCRPTVTPARSAVPSWAETA

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Crispr_ID: NZ_CP050974_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_10

7022323-7022443

Orphan

Consensus_repeat	Method
GGGGCTTCGCCCGCATCCGCCGTCCGCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_10

>merge|NZ_CP050974|10|7022323-7022443|CRISPRCasFinder
GGGGCTTCGCCCGCATCCGCCGTCCGCCTTTTGCCTTTTGGCTGCCGGTTGGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCTGGGGCGGGGGCTTCGCCCGCATCCGCCGTCCGTCCTT

>NZ_CP050974|10|10|7022323-7022443|CRISPRCasFinder
GGGGCTTCGCCCGCATCCGCCGTCCGCCTTT	TGCCTTTTGGCTGCCGGTTGGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCTGGGGCG
GGGGCTTCGCCCGCATCCGCCGTCCGTCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168501258.1\|7016948_7017899_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|188646
NZ_CP050974.1\|WP_168494958.1\|7024192_7025641_+\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112
NZ_CP050974.1\|WP_168494960.1\|7027011_7028178_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP050974.1\|WP_168494970.1\|7033109_7033319_-\|acyl-CoA-carboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|379386
NZ_CP050974.1\|WP_054233761.1\|7011360_7012038_-\|two-component-system-response-regulator-AfsQ1	unknown	unknown	gnl\|CDD\|223816
NZ_CP050974.1\|WP_168494950.1\|7015500_7016943_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143429
NZ_CP050974.1\|WP_168494942.1\|7012347_7013100_+\|SigE-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132028
NZ_CP050974.1\|WP_168494944.1\|7013295_7013922_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|238981
NZ_CP050974.1\|WP_168494948.1\|7014599_7015508_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|365919
NZ_CP050974.1\|WP_168494968.1\|7031934_7033113_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238868
NZ_CP050974.1\|WP_168494962.1\|7028330_7030103_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP050974.1\|WP_168494966.1\|7030980_7031601_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|178901
NZ_CP050974.1\|WP_054233631.1\|7023611_7024049_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719
NZ_CP050974.1\|WP_101400310.1\|7025808_7026771_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP050974.1\|WP_168494952.1\|7018319_7018961_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|371225
NZ_CP050974.1\|WP_168494956.1\|7022623_7023448_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_CP050974.1\|WP_168494946.1\|7014143_7014560_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168494955.1\|7020451_7022083_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP050974.1\|WP_168494964.1\|7030458_7030980_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168501259.1\|7019044_7020157_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227829

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168501258.1\|7016948_7017899_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|188646	cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.	3.96793e-75
NZ_CP050974.1\|WP_168494958.1\|7024192_7025641_+\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
NZ_CP050974.1\|WP_168494960.1\|7027011_7028178_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.57699e-43
NZ_CP050974.1\|WP_168494970.1\|7033109_7033319_-\|acyl-CoA-carboxylase-subunit-epsilon	gnl\|CDD\|379386	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit. This family includes the epsilon subunits of propionyl-CoA carboxylase, EC:6.4.1.3, and acetyl-CoA carboxylase, EC:6.4.1.2. These enzymes are involved in the biosynthesis of long-chain fatty acids. The epsilon subunit is necessary for an efficient interaction between the alpha and beta subunits of these enzymes.	4.40448e-09
NZ_CP050974.1\|WP_054233761.1\|7011360_7012038_-\|two-component-system-response-regulator-AfsQ1	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.84574e-81
NZ_CP050974.1\|WP_168494950.1\|7015500_7016943_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143429	cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.	0
NZ_CP050974.1\|WP_168494942.1\|7012347_7013100_+\|SigE-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	4.46191e-64
NZ_CP050974.1\|WP_168494944.1\|7013295_7013922_-\|uridine-kinase	gnl\|CDD\|238981	cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.	9.37699e-14
NZ_CP050974.1\|WP_168494948.1\|7014599_7015508_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|365919	pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity.	3.38151e-43
NZ_CP050974.1\|WP_168494968.1\|7031934_7033113_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238868	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.08345e-79
NZ_CP050974.1\|WP_168494962.1\|7028330_7030103_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP050974.1\|WP_168494966.1\|7030980_7031601_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	2.7401e-95
NZ_CP050974.1\|WP_054233631.1\|7023611_7024049_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	3.3105e-23
NZ_CP050974.1\|WP_101400310.1\|7025808_7026771_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.12345e-82
NZ_CP050974.1\|WP_168494952.1\|7018319_7018961_+\|PH-domain-containing-protein	gnl\|CDD\|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	0.000158129
NZ_CP050974.1\|WP_168494956.1\|7022623_7023448_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	1.05872e-135
NZ_CP050974.1\|WP_168494955.1\|7020451_7022083_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP050974.1\|WP_168501259.1\|7019044_7020157_-\|hypothetical-protein	gnl\|CDD\|227829	COG5542, COG5542, Predicted integral membrane protein [Function unknown].	7.0666e-05

>NZ_CP050974.1|WP_168494955.1|7020451_7022083_-|phospho-sugar-mutase
MQDELIARAETWLAEDPDPETREELAELIAAKDVPELTARFSGTLQFGTAGLRGELGAGPMRMNRAVVIRAAAGLAAYLKKQGETDGLVVIGYDARHKSADFARDTAAVMTGAGLRAAVLPRPLPTPVLAYAIRHLGAVAGVEVTASHNPPRDNGYKVYLGDGSQIVPPADAGIAAEIAAVSSLADVPRPDSGWETLDEGVLNAYLARTDAVLAQGSPRTARTVYTAMHGVGKDVLLAAFARAGFAEPALVAEQAEPDPDFPTVAFPNPEEPGAMDLAFAKARETGPDLIIANDPDADRCAVAVRDGADWRMLRGDEVGALLAQHLVNRGARGTFAESIVSSSLLGRIAEKAGLPYEETLTGFKWIARVDGLRYGYEEALGYCVDPDGVRDKDGITAALLITELASELKEESRTLLDLLDDIAVEHGLHATDQLSVRVEDLSVIANAMGRLREQPPTELAGLPITRSEDLTKGTDTLPPTDGLRYTLDGARVIVRPSGTEPKLKCYLEVVVPVGSHAELPTAHAKAAELLAGIKRDLSAAAGI
>NZ_CP050974.1|WP_168501259.1|7019044_7020157_-|hypothetical-protein
MCALRTHLRRAAPALLAYGAVRLLSLLLLAQWAHHQHHGLWPILATQWDADWYLGIAQHGYTHHLGTRYDANNLAFFPMYPFLVKAVAVLTPGTRATTGVAISIAASFVAAWGVFAVGHHLHGRRVALLLTFLWAALPVGLVQWMGYTESLFTAFAAWSLYAVLTGRWLWAGTLASLSGLTRPTGIAAAAAVTVTALLSLRGRFSPRVLAAAALAPAGWLGYVGWVGVRLGRWDGYFAVQRLWHNDWDGGAETLRRMGEVLAHDSRPELFLVMVTVTLIVSVVLFALGAWDRQPLPLLVFTGVLLLIVLGSGGVYFPRARFLLPGFPLLLPLALHLSRASPRFRALTLTAALLGSAYWSGYMALVWPSAP
>NZ_CP050974.1|WP_168494952.1|7018319_7018961_+|PH-domain-containing-protein
MTTPDDQPPVPDASRPESQDRIYRSHAGIAGGVLLLAITGWLGIDALVSGHGRTPWLALAALILLVPLVAAFTLRPAVYANEDRLRVRNPFRVVVLPWSKVASLRSGYSNEVVDTEGAKFQLWAIPVSLRARKSAARRQARNAAADSSGRTSSVASGPTRSQADQVMDDLRELAEARAATEGAQGEVSVRWAYEVMGPALAGAVVLAILLAVG
>NZ_CP050974.1|WP_168501258.1|7016948_7017899_-|deoxyribose-phosphate-aldolase
MPTTAPALGDVTASDSTLRRFLHGLPGVDTVGLEARAASLGTRSIKTTAKAYAIDLAISMVDLTTLEGADTPGKVRALGAKAVHPDPTDRTTPTTAAVCVYPDMVATAKDAVAGSGVKVASVATAFPAGRAALDVKLADVHDAVAAGADEIDMVIDRGAFLAGKYMKVYDEITAVKEACGTSARLKVIFETGELSTYDNIRRASWLGMLAGADFIKTSTGKVAVNATPANTLLMLEAVRDFRAQTGVQVGVKPAGGIRTTKDAIKFLVLVNETAGADWLDNHWFRFGASSLLNDLLMQRQKLATGRYSGPDYVTVD
>NZ_CP050974.1|WP_168494950.1|7015500_7016943_-|aldehyde-dehydrogenase-family-protein
MASASAFEYAPAPESRSVVDIAPSYGLFIDGEFTEAADGKVFKTVSPSTEEVLSEVAQAGAEDVDRAVKAARRAFEKWSALPGSERAKYLFRIARIIQERSRELAVLETLDNGKPIKETRDADLPLVAAHFFYYAGWADKLDHAGFGASPRPLGVAGQVIPWNFPLLMLAWKIAPALATGNTVVLKPAETTPLSALFFADICRQAGLPKGVVNILPGYGDTGAALVEHPDVNKVAFTGSTAVGKAIARQVAGTDKKVTLELGGKGANIVFDDAPIDQAVEGVVTGIFFNQGQVCCAGSRLLVQESIQDELLDSLKRRLSTLRLGDPLDKNTDIGAINSAEQLSRITSLVEQGEAQGAERWSPACELPSSGYWFAPTLFTNVTQAHTIARDEIFGPVLSVLTFRTPDEAVAKANNSQYGLSAGIWTEKGSRILAVASKLRAGVIWANTFNKFDPTSPFGGYKESGFGREGGRHGLEAYLDV
>NZ_CP050974.1|WP_168494948.1|7014599_7015508_-|aldehyde-dehydrogenase-family-protein
MSEKTDKTEQQRLSVFKTYKLYVGGKFPRSESGRVYEVTDSKGKWLANAPLSSRKDARDAVVAARKAFGGWSGATAYNRGQILYRVAEMLEGRKDQFVREVADAEGLSKSKAAAVVDAAIDRWVWYAGWTDKIAQVVGGGNPVAGPFFNLSTPEPTGVVTVLAPQESSFLGLVSVIAPVIATGNTVIVIASEKSPLPALSLGEVLATSDLPGGVVNVLSGKTAEIAAPLAAHQDVNAIDLAGADAVLAKELEIAAADNLKRVVRPQPVDYSQTPGIERLTAFLETKTVWHPTGALGASGSSY
>NZ_CP050974.1|WP_168494946.1|7014143_7014560_+|hypothetical-protein
MARHAHQQTPLARTTARIAVAFGVVAAGAAAAASPAVADAAPAVDLMRTQPTSLGNLDPQAGLGALTGTVGHVTGPVAGLKPNPLAGTGVDPLDNGVGTQLADFKPLTSQALTGPLAQAPSLGSVPVVGQALGLLGGV
>NZ_CP050974.1|WP_168494944.1|7013295_7013922_-|uridine-kinase
MGSHPPIPTRVVLLCGPSGSGKSLLAADSGLPVLRLDDFYKEGTDPTLPQVEGSSDIDWDHPQSWDADIAVAAIEELCRTGRTTVPVYDISLSARTGAEALHIGRTPLFIAEGIFAAEIVERCRELGMLADALCLSRGPLTTFRRRFLRDLREGRKSVPFLLRRGWRLMRAERSIVARQSALGAHPCDKAEALGRLTAAAAGRCTTPA
>NZ_CP050974.1|WP_168494942.1|7012347_7013100_+|SigE-family-RNA-polymerase-sigma-factor
MNTLHSTSTSAVVTRLHDVRGSEKSGAVSGRGCARGTGRQHTTYMTVVDAFTGESGGNGGAHGGAAYREVTGERRSVSEAEFTAYVQERRASLYATAYHLTGDRFEAEDLLQSALFSTYRAWDRISDKAAVGGYLRRTMTNLHISAWRRRKLNEYPTEELPETAGDTDAMRGTELRAVLWQALARLPELQRTMLVLRYYEGRTDPEIAEILDISVGTVKSSIWRSLRRMREDEVLSFGRDEEESFGELVA
>NZ_CP050974.1|WP_054233761.1|7011360_7012038_-|two-component-system-response-regulator-AfsQ1
MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGEREANDSATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHDYLGDSRLVDACVQRLRAKIEDVPSSPTLIRTVRGVGYRLDTPQ
>NZ_CP050974.1|WP_168494956.1|7022623_7023448_-|purine-nucleoside-phosphorylase
MNASLLPDDIQGDPHAAADAAATRLRELTGAETHDVALVMGSGWAPAVDALGTPEAEFQVTELPGFPPPAVEGHGGKIRSYKIGDKRALVFLGRTHYYEGRGVAAVAHGVRTAVAAGCKTIVLTNGCGGLRADMRPGQPVLISDHINLTATSPIVGANFVDLTDLYSPRLRALCKEVDPTLEEGVYAQFTGPHYETPAEIRMARVLGADLVGMSTVLEAIAAREAGAEVLGISLVTNLAAGMTGEPLNHEEVLQAGRDSATRMGALLTQVLDRL
>NZ_CP050974.1|WP_054233631.1|7023611_7024049_-|gamma-glutamylcyclotransferase
MSLYAAYAGNLDPRLMTRRAPHSPLRATGWLNGWRLTFGGEHMGWEGALVTLVEAPRSQVFVALYDIAPLDEDSMDRWEGVGLDIYRRMRVRVHTLEGEEPAWVYVLNGYEGGLPSARYLGEIADAAESAGAPHDYVMELRKRPC
>NZ_CP050974.1|WP_168494958.1|7024192_7025641_+|NAD(P)H-quinone-dehydrogenase
MEYVTRIVIIGGGPGGYEAALVAAQLGAEVTVVDCDGLGGASVLTDCVPSKTLIATAEVMTTFDSSYEELGIIVADDTPPMEQAARVVGVDLGKVNRRVKRLALAQSHDITASVTRAGARVLRGRGRLEGMQALDGSRKVVVRAVDGTEETLVADAVLIATGGHPRELPDAQPDGERILNWTQVYDLDELPEELIVVGSGVTGAEFAGAYQALGSRVTLVSSRDRVLPGEDPDAAAVLEDVFRRRGMNVMARSRAESAKRVGDRVEVTLSDGRVISGSHCLMAVGAIPNSSGMGLEEAGVRVRDSGHIWTDKVSRTTAPGVYAAGDVTGVFALASVAAMQGRIAMYHFLGDAVAPLNLKTVSSNVFTDPEIATVGYTQADVDAGKIDARVVKLPLLRNPRAKMQGIRDGFVKIFCRPGTGIIVGGVVVAPRASELIHPISIAVDNNLTVEQIANAFTVYPSLSGSIAEVARQLHTRKAGDEG
>NZ_CP050974.1|WP_101400310.1|7025808_7026771_+|DeoR/GlpR-transcriptional-regulator
MFAAERRQLILEMVRANGAVSLRELARVVQTSEVTVRRDVRALEAEGLLDRRHGGAVLPGGFTRESGFPQKSHLATAEKTAIADLAAGLVEEGEAIVVGAGTTTQELARRLARVPGLTVVTNSLLVAQALAHANRVEVVMTGGTLRGSNYALVGSGAEQSLQGLRVSRAFLSGSGLTAERGLSTSNMLSASVDRALVQAAGEVVVLADHTKLGTDTMFQTVPTDLITRLVTDEPPAHDDRAVTELQALADQGVQIAVAGQAGGGAGGDTVPTGRQPRRDMPLPGPRRGQVPGAGPQLRSATVLGEQSPGERARVADLRRR
>NZ_CP050974.1|WP_168494960.1|7027011_7028178_+|AI-2E-family-transporter
MRYVVLGSRPARGAGAVARARTAGTAIRRAAERDAVPVNQGLRVAAAYAWRLLVLGVAVYAAFKIVGRLQLVAVALFLALVVTSVLRPLADLLARRMPRPLAVVVSVMGSLALILGLLALVGSLVAGESDQLGQEFAGGIGRIQRWLEGPPFRVRHTVLSNLQGKVTTYVKEHRSTLISSALSGAGRAVEVLTGAVLALFCSLFFIHSGDRFWHWFQGLLPESARDPWGRAGRVAWRTFAGYTRGIIIVAATNAVLVGIALFALRVPLALPLTLLEFFAAFIPLVGSPIALGVATVVALASRGPVIALVVLALIVVVGQIEGHVLHPLVLSWAVRLHPVVVALSVISGGILAGVIGAVVAVPMVSVAWSVISEMRARPEPAHPGRSPG
>NZ_CP050974.1|WP_168494962.1|7028330_7030103_-|ATP-grasp-domain-containing-protein
MRKVLIANRGEIAVRVARACRDAGIASVAVYAEPDRDASHVRAADEAFALGGDTPATSYLDIAKVLQAAKDSGADAIHPGYGFLSENAEFAQAVLDAGLTWIGPPPQAIRDLGDKVSARHIAQRAGAPLVAGTPDPVSGADEVVAFAEEHGLPIAIKAAFGGGGRGLKVARTLEEVPELYDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRDCSLQRRHQKLVEEAPAPFLSDAQVAELYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRLQVEHPVTEEVAGIDLVREMFRIADGEELGYGDPALRGHSFEFRINGEDPGRNFLPAPGTVTLFAPPSGPGVRLDAGVESGSVIGPAWDSLLAKLIVTGATREQALQRAARALEEFQVEGMATAIPFHRAVVQDPAFAPELTGSADPFTVHTRWIETEFANEIPAFTAPADTETDEEPGRETVVVEVGGKRLEVSLPSSLGMSLARTGLAAGAKPKRRAAKKSGPVASGDTLASPMQGTIVKVAVEEGQEVKEGDLVVVLEAMKMEQPLNAHRSGTIKGLSAEVGASITSGAAICEIKD
>NZ_CP050974.1|WP_168494964.1|7030458_7030980_+|hypothetical-protein
MVRRPVAWVAAIVLFVEAIGIALLNWFLGVVVDRQDMSLAGLDSNMMSVSSKVGGLVFGFYFALCGVAALLVAVRGRAPGLFGRILLISAAVVHGLLGAFTVGLVGWGAFVFMMVALGLIVFTLLAFDRGAGPADAAPGDGAGGEDGNGGTNGGTNGGTGGSPVTAPPTPSAS
>NZ_CP050974.1|WP_168494966.1|7030980_7031601_-|septum-formation-inhibitor-Maf
MTDQPRRRLVLASQSPARLGLLRQAGLDPEVIVSGVDEDAVSAPTPAELALALAEAKASVVAARTEVQGALVIGCDSVLDLDGEALGKPADAEEATARWKAMRGRAGTLQTGHCVYDTTAKRYASAIASTVVRFGEPTDAEIAAYVASGEPLHVAGAFTLDGRSAPFIEGIDGDHGNVIGISLPLVRRLLAELGVGITELWAPREK
>NZ_CP050974.1|WP_168494968.1|7031934_7033113_+|SGNH/GDSL-hydrolase-family-protein
MAFTKGTLVPFREAAAVFTTAWTASPQLPAVGFTPNWSQEGFWRQSLRQVVRIGAGGGRVRIRLSNAYGTSPLRIAGATVARAGAGAGLEPGSLRRHTFEGAGGVEIPARGQVASDPAELVVEALESVTVTLYLDAVTGPATFHAQAFATSHRGEGDRLDDLDGDGFGETSESWYFLSAVEVDAGRRDGVVLFGDSIVDGFGSTPGANRRWSDALAERTGRPVLGAGIGGNLLLNDSAWYGEKGVRRFGRDVLEQAGVEAVVVLLGLNDIGFSETDEQPTYKPAPVLASDELIDGYRELIRQARGRGLRAIGATLLPFGGSDHWGERAAKVSREVNGWILGAGEWDAVVDLNEVLADPGDPDRLRGVYDFGDHLHPNDAGYGVMAEAAAGCF
>NZ_CP050974.1|WP_168494970.1|7033109_7033319_-|acyl-CoA-carboxylase-subunit-epsilon
MTIKVVRGNPTPEELAAALAVVRARAAVATTTPPGAPGTRDSWSDPSRIAGQHLPQPGPTAWTRTYWPA

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Crispr_ID: NZ_CP050974_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_11

7180833-7180957

Orphan

Consensus_repeat	Method
GGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_11

>merge|NZ_CP050974|11|7180833-7180957|CRISPRCasFinder
GGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCTGAGGCGGGGCTTCGCCCCGGATCCCCCGCCTACCCGGATTCGTTTGGCTGCGGGCCCGGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCT

>NZ_CP050974|11|11|7180833-7180957|CRISPRCasFinder
GGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCT	GAGGCGGGGCTTCGCCCCGGATCCCCCGCCTACCCGGATTCGTTTGGCTGCGGGCCC
GGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168495157.1\|7188714_7191012_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP050974.1\|WP_168495145.1\|7173355_7174504_-\|winged-helix-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377630
NZ_CP050974.1\|WP_168501277.1\|7182497_7183451_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176103
NZ_CP050974.1\|WP_168495154.1\|7185818_7186505_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP050974.1\|WP_168495139.1\|7171070_7171943_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_CP050974.1\|WP_168501278.1\|7195158_7195824_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|377233
NZ_CP050974.1\|WP_168495143.1\|7172543_7173317_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP050974.1\|WP_054235005.1\|7181709_7182264_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239313
NZ_CP050974.1\|WP_168495151.1\|7179394_7180816_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP050974.1\|WP_168495137.1\|7170403_7171030_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP050974.1\|WP_168495155.1\|7186501_7187026_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP050974.1\|WP_168495156.1\|7187409_7188360_-\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|259800
NZ_CP050974.1\|WP_168495147.1\|7174782_7175118_-\|DUF192-domain-containing-protein	unknown	unknown	gnl\|CDD\|376876
NZ_CP050974.1\|WP_168495150.1\|7178555_7179260_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|235334
NZ_CP050974.1\|WP_168495158.1\|7191075_7192539_-\|catalase	unknown	unknown	gnl\|CDD\|163712
NZ_CP050974.1\|WP_168495152.1\|7181169_7181703_-\|alkyl-hydroperoxide-reductase	unknown	unknown	gnl\|CDD\|129859
NZ_CP050974.1\|WP_168495141.1\|7171981_7172443_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP050974.1\|WP_168495149.1\|7176762_7178088_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224787
NZ_CP050974.1\|WP_101400405.1\|7175691_7176465_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237825
NZ_CP050974.1\|WP_168495153.1\|7183473_7185822_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225669

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168495157.1\|7188714_7191012_+\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	3.83948e-131
NZ_CP050974.1\|WP_168495145.1\|7173355_7174504_-\|winged-helix-DNA-binding-domain-containing-protein	gnl\|CDD\|377630	pfam06224, HTH_42, Winged helix DNA-binding domain. This family contains two copies of a winged helix domain.	1.17748e-43
NZ_CP050974.1\|WP_168501277.1\|7182497_7183451_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176103	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The C-terminal domain also contains the redox-active cysteines that mediate the redox-dependent conformational switch. Thus, the interaction between the OxyR-tetramer and DNA is notably different between the oxidized and reduced forms. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.63628e-79
NZ_CP050974.1\|WP_168495154.1\|7185818_7186505_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.90461e-96
NZ_CP050974.1\|WP_168495139.1\|7171070_7171943_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	1.17055e-35
NZ_CP050974.1\|WP_168501278.1\|7195158_7195824_-\|DUF402-domain-containing-protein	gnl\|CDD\|377233	pfam04167, DUF402, Protein of unknown function (DUF402). Family member FomD is a predicted protein from a fosfomycin biosynthesis gene cluster in Streptomyces wedmorensis. Its function is unknown.	5.4619e-20
NZ_CP050974.1\|WP_168495143.1\|7172543_7173317_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.38391e-15
NZ_CP050974.1\|WP_054235005.1\|7181709_7182264_-\|peroxiredoxin	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	1.17331e-78
NZ_CP050974.1\|WP_168495151.1\|7179394_7180816_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	8.39173e-61
NZ_CP050974.1\|WP_168495137.1\|7170403_7171030_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	7.26511e-24
NZ_CP050974.1\|WP_168495155.1\|7186501_7187026_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	5.62491e-16
NZ_CP050974.1\|WP_168495156.1\|7187409_7188360_-\|SPFH-domain-containing-protein	gnl\|CDD\|259800	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	2.21341e-130
NZ_CP050974.1\|WP_168495147.1\|7174782_7175118_-\|DUF192-domain-containing-protein	gnl\|CDD\|376876	pfam02643, DUF192, Uncharacterized ACR, COG1430. Two structures have been solved for members of this large (>500 members) family of bacterial proteins present mostly in environmental bacteria and metagenomes (distant homologs are also present in several Plasmodium species). TOPSAN analysis for Structure 3pjy shows that there is much similarity with the other solved structure, Structure 3m7a, solved for UniProt:Q2GA55 (Saro_0823), a homolog of Thermotoga maritima TM1668, UniProt:Q9X1Z6., The homolog in Caulobacter crescentus (CC1388), UniProt:Q9A8G6, is associated with CspD, a cold shock protein (CC1387), UniProt:Q9A8G7. However, the genomic context of UniProt:Q2GA55 is most conserved with a putative xylose isomerase, suggesting a possible role in extracellular sugar processing. Saro_0821, UniProt:Q2GA57, is annotated as an AMP-dependent synthetase and ligase. Structure 3m7a structure corresponds to the C-terminal (27-165) fragment of the YP_496102 (Saro_0823) protein and it is structurally unique, as the best hits from Dali have a Z-score of 3.8 (1nt0, 2j1t, 3kq4) and it is thus a likely candidate for a new fold. Interestingly, many of the top Dali hits are involved in sugar metabolism. There are no obvious active site-like cavities on the protein surface of 3m7a (http://www.topsan.org/Proteins/JCSG/).	3.23432e-13
NZ_CP050974.1\|WP_168495150.1\|7178555_7179260_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000517234
NZ_CP050974.1\|WP_168495158.1\|7191075_7192539_-\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP050974.1\|WP_168495152.1\|7181169_7181703_-\|alkyl-hydroperoxide-reductase	gnl\|CDD\|129859	TIGR00777, AhpD_protein., alkylhydroperoxidase, AhpD family. Members of this family are alkylhydroperoxidases, which catalyze the reduction of peroxides to their corresponding alcohols via oxidation of cysteine residues. In these alkylhydroperoxidases, the cysteines are located in a conserved -CXXC- motif located towards the COOH terminus. In Mycobacterium tuberculosis, two non-homologous alkylhydroperoxidases, AhpD and AhpC, are found in the same operon. [Cellular processes, Detoxification].	8.77587e-92
NZ_CP050974.1\|WP_168495141.1\|7171981_7172443_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.68645e-14
NZ_CP050974.1\|WP_168495149.1\|7176762_7178088_+\|PhoH-family-protein	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0
NZ_CP050974.1\|WP_101400405.1\|7175691_7176465_+\|isoprenyl-transferase	gnl\|CDD\|237825	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional.	2.01614e-166
NZ_CP050974.1\|WP_168495153.1\|7183473_7185822_-\|ABC-transporter-permease	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	8.61314e-08

>NZ_CP050974.1|WP_168495151.1|7179394_7180816_+|AI-2E-family-transporter
MSRVPGLLGRLGAKLTELGARLDERRAEVEKESGGSLDLSDETDDRSPRGSTTVRADAKPSAPPADATPEREPGSESEPSVMFVPAPHYTHGPQTHTRPDPVLAVPWGVRVAAEAGWRLLVLAGTLWVLMRVISAVQLVVLAFVAALLITALLQPTVARLKRVGFPRGLATALTAILGFVIMGLVGWFVVWQVQENIDNLSNQIQDGIDELRKWLLNSPFHVTDKQINEIAKNLREAIGANTDQITSAGLEGVTVIVEALTGILLTMFSTLFLLYDGKRIWEWTLKLVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLNVPMAVPLAVFIFLFAFIPLVGAVMSGALAVVVAVVTQGVFTALMTLLVVLAVQQIEGHILQPFILGRAVRVHPLAVVLSVAAGGLVAGIGGAVVAVPLVAVTNTVVGYLRSYSREPGLRHAPEPRGATAIDVAPVRPPSP
>NZ_CP050974.1|WP_168495150.1|7178555_7179260_+|transglycosylase-SLT-domain-containing-protein
MLEGNRVSRISVRGLAVASATAVTAVGAVSGVASGNTGQPSNDAEATASDSTLLADIPAGQQAQVQTASLTQQADAQAIAADASAKKDAEEAARKQAAKDAVAKQKAAADAKARKEAAEAASRSETRAAVSLAPQSSYTVAEVQAIARQIIPSGQFQCFSNIVDHESTWNYRAQNPSSGAYGLVQSLPGSKMASVGADWQTNPATQIKWGLNYMNERYGSPCDAWSYWQAHGNY
>NZ_CP050974.1|WP_168495149.1|7176762_7178088_+|PhoH-family-protein
MVTSTKRRMPDRRTYVLDTSVLLADPNALSRFDEHEVVLPIVVVTELEAKRHHPELGYFARQALRLLDEFRVRFGRLDAPIPIGELGGTVRVELNHSDPSVLPSGYRLGDNDSRILAVARNLQAEGYDVTVVSKDLPLRIKASSVGLLAEEYRAELAITGSSGWTGMSELTLSGEQVDILFEDGHAYVPEAADLPVHTGLTIQSERGKALGRVTSEGNVRLVRGDREAFGIKGRSAEQRIALDLLLDPDIGILSMGGRAGTGKSALALCAGLEAVLERRQHQKVMVFRPLYAVGGQELGYLPGSEAEKMGPWAQAVFDTLSAVTSREVIEEVTARGMLEVLPLTHIRGRSLHDAFVIVDEAQSLERNVLLTVLSRIGANSRVVLTHDVAQRDNLRVGRYDGVVAVVEKLKGHPLFAHVTLNRSERSQIAALVTEMLEDGQI
>NZ_CP050974.1|WP_101400405.1|7175691_7176465_+|isoprenyl-transferase
MNLRDNLRRLLLRFYTRRVEGHLDHDQVPKHIGVIMDGNRRWAKAAGSTAAQGHRAGADKIEEFLGWCSETDVEVVTLWLLSTDNFDRPEDELVPLLGIIEGVVRTLAADGRWRVHHVGTPDILPSQMQTALKEAEEATAHVDGIVVNVAIGYGGRQEIADAVRSMLLDAADKGSSIEDVAESVDIDLIGKHLYTSAQPDPDLVIRTSGEQRLSGFMLWQTAHSEYYFCEVFWPAFRKVDFLRALRDYAARHRRYGG
>NZ_CP050974.1|WP_168495147.1|7174782_7175118_-|DUF192-domain-containing-protein
MAMLTTPGIPAPVPLEIAVSARARRRGLLGRDGIDGALLLSPASAVHTLGMRFAIDVAYLDRKFRVLAVRTMKPGRMGRPRPRSRHILEAEAGAMERWGVRRGAQVTVHDR
>NZ_CP050974.1|WP_168495145.1|7173355_7174504_-|winged-helix-DNA-binding-domain-containing-protein
MTLKITWNEASARRMERQFLAVPARGGTPVADTVGAMLGAHAQVLSAAEVSVGVRAEGVTRADVRAALWEDGSLVKTYGPRGTVHLLPTAELPLWTAALTAIPSGRSPSAPAVRLTEEQADEVVAAIGDALDGTRLTIDELSDEVVARTGSWAGDLVMPAFQGMWPRWRQVMHRAGQRGALCFAPNRGRKATYTRPPHFEPLAADEGLALLVGRYLRAYGPATPGRFAKWAAAPRGWATELFASLAGTGVIEEVDFEGPAWVAAGDTEFPGAPVSGVRLLPYFDAYAIAAGPREVLFPGPAYARALAGGQAGNFPVLLVDGVVAGVWHQRRRGRRTTITVEPLEGLTAARERELAQQVERVGEILEAGAELVVGRVTAGPHA
>NZ_CP050974.1|WP_168495143.1|7172543_7173317_+|methyltransferase-domain-containing-protein
MTTIRTFEALVDEAVAASVEGWDFSWFEGRATEERPSWGYARAMGELLAQASAALDIQTGGGEVLASAPTLPPLTAATEGWPPNVAKATALLHPRGAVVVASPEDAPLPFADGAFDLVTSRHPVTTHWAEIARVLRPGGTYFSQQVGPASVFELVEYFLGPLPEDVRNGRHPDHARAAAEAAGLDVVDLRAERLRVEFYDIGAVVHFLRKVIWMVPGFTVDRYRTELRALHERIEAKGPFVAHSARFLIEARKPRRS
>NZ_CP050974.1|WP_168495141.1|7171981_7172443_+|GNAT-family-N-acetyltransferase
MSDDDVRLRDAVETDLDLFLVYEQDPEAARRSRFEPRTREAFMSHWRTRVLGDDTVLVQTVTVDGVPAGNVVSWWEGERRFIGYWFGRPYWGRGIGTKALARFLELERNRPLYADPFTGNTASLRLLERHGFQHHGPIRHGNDDHTLLVLPEE
>NZ_CP050974.1|WP_168495139.1|7171070_7171943_+|LLM-class-flavin-dependent-oxidoreductase
MTVLGVVFRPQLPPERLRDVARAADDAGLEELWLWEDCFLEGGISAAAAALAWTERVRVGVGLLPVPLRNVAVTAMEAATLHRMFPGRAILGVGHGVQDWMGQVGARAESPVTLLREHLDALRALLRGERVSTDGRYVKLDGVALDWPPAAAPEVLAGATGPRSLRLSGAAADGTVLTAATAPEGVRRARRLIDEGRESAGRTDHHRVVVYLHTATGPDAAARLRAEIEANGEDPLPEHGVAGDADAVAKAVQRLAEAGADTVVLQPTADEPDPEAFVRFAAREVRPLIG
>NZ_CP050974.1|WP_168495137.1|7170403_7171030_+|dihydrofolate-reductase
MRRIVLMMSVSLDGFIEGPNREIDWHRVDAELHRHFNEEIKKLGGLLDGRVTHELMAGFWPTADQDPDSPDSTAEMVEFAGIWRDIPKYVYSRTLERADWNTTIVRDVVPDEVRALKEQPGGDLGLGGADLAAAFLRHDLVDEFRVYVHPVLIGRGKPLFPESHTPTDLRFVESRAFGNGVVLLRYERDSTAIAPATTTATDPGTADT
>NZ_CP050974.1|WP_168495152.1|7181169_7181703_-|alkyl-hydroperoxide-reductase
MALDVLKSALPDYAKDLRLNLGSVIGNSDLPQQRLWGTVLACAIAARSPRVLRELEPEAKAQLSPEAYTAAKSAAAIMAMNNVFYRTRHLLSDPEYGTLRAGLRMNVIGNPGVEKVDFELWSLAVSAVNGCGQCLDSHEQVLRKAGVDRETIQEAFKIASVIQAVATTLDAEAVLAE
>NZ_CP050974.1|WP_054235005.1|7181709_7182264_-|peroxiredoxin
MLTVGDKFPEFDLTACVSLEKGEEFQQINHKTYEGQWKVIFAWPKDFTFVCPTEIAAFGKLNDEFADRDAQVLGFSGDSEFVHHAWRKDHDDLRDLPFPMMADSKHELMRDLGIEGEDGFAKRAVFIVDQNNEIQFSMVTAGSVGRNPKEVLRVLDALQTDELCPCNWTKGENTLDPVALLAGE
>NZ_CP050974.1|WP_168501277.1|7182497_7183451_+|LysR-family-transcriptional-regulator
MSPKGNGRRQPSLAQLRAFAAVAEHLHFRDAAAAIGMSQPALSGAVSVLEETLGVTLLERTTRKVLLSPAGERLAVRAKAVLDEVGALMEEAEAVRAPFTGALRLGVIPTVAPYLLPTVLNLVHDRYPDLDLQVHEEQTANLLDGLTSGRLDLLLLAVPLGMPGVTELPLFDEDFVLVTPLDHSLGGREGIPREALRELNLLLLDEGHCLRDQALDICREAGREDAPVTTTAAGLSTLVQLVAGGLGCTLLPRTAVKVETTRSNQLLTGYFADPAPTRRIALAMRAGAARGGEYEELAAALREALRPLPVRVWDRDA
>NZ_CP050974.1|WP_168495153.1|7183473_7185822_-|ABC-transporter-permease
MSAAPSVRQWSRDLAMGAKFAFTGGREGWMRAVLTAVGVGLGVALLLLTTALPSALQARSDREKARTDITFTDVGIPKASDRTLLVAAVDDTYRDKDIRGREVQPEGARAPLPPGVKKIPAPGEMVVSPALADLLKSGSGKLLRERLPYRTIGTIGEPGLVGANELSFYAGADNLAPRIDGSRVTRIDHFGEPLGPPDKLDPVLLLLIIVVFVVLLLPVGVFIAAAVRFGGERRDRRLAALRLVGSDSRMTRRIAAGEALSGAVLGLAFGTVFFLLARQLAGSVEIFGKSVFPSYLNPTPALAALVAVAVPAAAVLVTLLALRGVVIEPLGVVRAAKPARRRLWWRLLLPIGGLAMLYPMIGKGNTSGNFNQYLVIGGVLLLLIGVTALLPWIVETVVARLGSGSVSWQLAIRRLQLSSGTAARMVNGIAVAVAGAIALQMLFAGVEGDYTKDTSNDLQRAQMQIRLPYDVPLDQAREQFARTKGVRQVTAIGSGSLGDRKRDPNTSTTATVGNCASLREVATLPTCRDGDVFLVKGHDSDLDAAKLGKPGRTLYIDPSYSDSFRGRQAAWTVPQDIKAAQIRTDATNGLTGGILFTPSALPAGAAQAIEGSAYLQIDQSAPDVYDLVRNTTAKLSPLAHAWTWASTEQDNRYTSIRTGLSVGAACVLFLIGASLLVSQLEQLRERKKLLSVLVAFGTRRRTLSLSVLWQTAIPIALGLLLASVVGVTLGVVLQKMTSVSVRVDWPSLLSMTGIGAGVVLLVTALSLPPLLRLMRPDGLRTE
>NZ_CP050974.1|WP_168495154.1|7185818_7186505_-|ATP-binding-cassette-domain-containing-protein
MTPAGSLLTAHDLRKAYGPTSALDGAEFSIHPGEVVAVMGPSGSGKSTLLHCLAGIVTPDSGSIVYNGQEMATMNDAQRSALRRSEFGFVFQFGQLVPELTCVENVALPLRLNGTGRKEAERTALSWMERLEVDDLKGKRPGEISGGQGQRVAVARALVTSPRVLFADEPTGALDSFNGERVMDLLTEAARSTNAAVVLVTHEARVAAYSDREIVVRDGKSRDMERIV
>NZ_CP050974.1|WP_168495155.1|7186501_7187026_-|PadR-family-transcriptional-regulator
MSIGHTLLGLLESGPRHGYDLKRAFDEKFGHDRPLHYGQVYSTMSRLLKHGLVEVDGIEAGGGPERKRYAITEAGITDVQQWLATPEKPEPYLQSTLYTKVVLALLTHRDASEILDTQRSEHLRMMRILTDRKRKGDLADQLICDHALFHLEADLRWLELTAARLEKLAEAVTR
>NZ_CP050974.1|WP_168495156.1|7187409_7188360_-|SPFH-domain-containing-protein
MPEHDSTPSDPTSLADVPRMPDPRVREFAAHSIGGGLALLFGLVGLLLGAGMIAAATTVDAGGAKAALIVPGILIGLAAFIAMCGLNTVAPGEARVVQLFGRYRGTIRQDGLRWVNPFTSRTKISTRVRNHETAVLKVNDAYGNPIELAAVVVWRVEDTAQATFEVDDFLEFVATQTEAAVRHIAIEYPYDAHDADGLSLRGNAEEVTEKLAVELHARVEAAGVSIIESRFTHLAYAPEIASAMLQRQQAGAVVAARREIVDGAVGMVEAALARITERDIAELDPERKAAMVSNLLVVLCGDRAPQPVLNTGSLYQ
>NZ_CP050974.1|WP_168495157.1|7188714_7191012_+|penicillin-binding-protein
MGRAEERRARQHGGRRAAMPSSGGKPRRTGIRRFVNWKTILGTFLGFCLLGMGAFIVLYMVVSIPQGNAAATQQSNIYKYSDGSTLARTGKVNREIVGLDKVPKDVQKTFVAAENKSFYKDAGVDLKGTARGLINTLSGKGKQGGSTITQQYVKNYYLTQDQTVTRKLKELVISLKLDRQQSKDDILAGYINTSYYGRNSYGIQAAAQAYYGKDASGLSVEQGAYLASLLQAPSQYDWGAATPTGKRLVTARWNYTLDNMVEEGWLPAAKRATMKFPVPQDPKGVPGMEGQTGYLVDAANSALANRLVTQGAAANYDDAKALVDAGGWTITLNIDKKKQTQLEVAVKTKLTGKLDAKKRKVDGDVEAGAASVDPKTGKVVAMYGGEDYFKHYVNNATRRDYQPASTFKPLIFAAALDEQAKTQDGQDITADTVYDGTSGRSVKGSSIGFAPPNEDDQNYGDVTVQTAMNKSINSVFAQMGVDVGMDEVLKVAGKLGMDTKGMQAVPAQTLGTMGASPLEMAGIYATLDNHGRKVTPAVVASAEHKDSSVDFPNPIGDQVINSQAADTVTSVLTGVVNDGTAQVSVAQAVDRNDQQVAGKTGTSDNNKSAWFTGYTPNLVTSVGLFGEVPKDRKDTGGKVVKQGTQVSLKGAAGGGRVNGGGFPAQIWAAYTFNAMGSVTTFDLDTTQGAAMEPSTTPTISETPSDTPSQTPTTEPPTSEPPTTSEPPTPTSEPPTTPATTPPTTPTGTPTDEITPEDPFNPNNQQ
>NZ_CP050974.1|WP_168495158.1|7191075_7192539_-|catalase
MTQAPQKAPYTTNNVGIPVESDEHSLTVGRDGPILLQDHYLIEKMAQFNRERVPERVVHAKGSGAYGFFEVTNDVSQFTKADLFQPGKRTEMLARFSTVAGEQGSPDTWRDPRGFALKFYTEQGNYDLVGNNTPIFFVRDTIKFQDFIRSQKRRPDNGLRDNDMQWDFWTLSPESAHQVTYLMGDRGVPKTYRNMNGYGSHTYMWINGAGERFWVKYHFKTDQGIDFLTQAEADELAGTDPDLHRMDLYKAIESGNAPTWSLKVQIMPFEDAADYRFNPFDLTKVWPHGDYPLIDVGRMTLNKNPEDYFIHIEQAAFEPSNLVPGVGPSPDKMLLGRLFSYPDTHRYRIGPNYAQLPPNRPHAPVNSYAKDGPMRYEPSLAARPYAPNSYGGPAADYGQFGDPASWEATGELVREAYKLHSEDDDWGQPGTMVRQVLDDAARDRLVSNVSGHLKAGVSRPVLDRALQYWRNIDKELGDRIAHNVNGG
>NZ_CP050974.1|WP_168501278.1|7195158_7195824_-|DUF402-domain-containing-protein
MAAGGSTVYWAPGSHILWRYRENAGEQFHICRPVTVVRDDEELLAVWMAPGTECVKPVLADGTPVHGEPLESRYTKARTVQRGRWFGNGVLKLARPGEPWSVWLFWEPGWRFKNWYVNLEAPLARWEGGVDSEDHFLDISVHPDRSWHWLDEDEFAQAQQAGLMDTQLAAQVREAGHCAVEVIRAWGAPFSDGWQHWRPDPAWPVPSLPDDWDRTPAHVSS

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Crispr_ID: NZ_CP050974_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_12

8071049-8071206

Orphan

Consensus_repeat	Method
GGGAGCGGGGGCGCCCGTCTGCGGGAACCCGTA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP050974_12

>merge|NZ_CP050974|12|8071049-8071206|CRISPRCasFinder
GGGAGCGGGGGCGCCCGTCTGCGGGAACCCGTAGCCGCTCTGCTGCGGTCCCGGCTGGGACGGGACGGGGGCGCCCGTCTGCGGGAACCCGTAACCGGTCGGCGGGGCCGGGGGTTGGGCGCGGCGGGAGCCGGGATCCCGGGGTGCGGGAAGCCGTA

>NZ_CP050974|12|12|8071049-8071206|CRISPRCasFinder
GGGAGCGGGGGCGCCCGTCTGCGGGAACCCGTA	GCCGCTCTGCTGCGGTCCCGGCTGGGA
CGGGACGGGGGCGCCCGTCTGCGGGAACCCGTA	ACCGGTCGGCGGGGCCGGGGGTTGGGCGCGGC
GGGAGCCGGGATCCCGGGGTGCGGGAAGCCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168496216.1\|8074035_8075364_-\|type-VII-secretion-protein-EccE	unknown	unknown	gnl\|CDD\|274857
NZ_CP050974.1\|WP_168496220.1\|8077101_8078361_+\|type-VII-secretion-associated-serine-protease-mycosin	unknown	unknown	gnl\|CDD\|274856
NZ_CP050974.1\|WP_168496226.1\|8082582_8083830_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|274856
NZ_CP050974.1\|WP_168496214.1\|8073163_8074036_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168496212.1\|8067283_8069155_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NZ_CP050974.1\|WP_168496228.1\|8083941_8084280_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168496218.1\|8075561_8077091_+\|type-VII-secretion-protein-EccB	unknown	unknown	gnl\|CDD\|368288
NZ_CP050974.1\|WP_054232827.1\|8056734_8057190_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP050974.1\|WP_067371255.1\|8056407_8056701_+\|DUF503-domain-containing-protein	unknown	unknown	gnl\|CDD\|377364
NZ_CP050974.1\|WP_168496202.1\|8057186_8058092_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP050974.1\|WP_168501331.1\|8066147_8067191_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP050974.1\|WP_168486620.1\|8072404_8072701_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168496230.1\|8084344_8084650_+\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|274862
NZ_CP050974.1\|WP_168496204.1\|8062116_8063070_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP050974.1\|WP_168496210.1\|8065212_8066151_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP050974.1\|WP_168496222.1\|8078477_8079938_+\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NZ_CP050974.1\|WP_101400982.1\|8052587_8052866_+\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP050974.1\|WP_168496206.1\|8063195_8064200_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP050974.1\|WP_168496224.1\|8080707_8082528_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP050974.1\|WP_168496208.1\|8064196_8065216_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223521

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168496216.1\|8074035_8075364_-\|type-VII-secretion-protein-EccE	gnl\|CDD\|274857	TIGR03923, T7SS_EccE, type VII secretion protein EccE. This model represents the transmembrane protein EccB of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccE1, EccE2, etc. This model represents a conserved core region, and many members have 200 or more additional C-terminal residues. [Protein fate, Protein and peptide secretion and trafficking].	3.80602e-58
NZ_CP050974.1\|WP_168496220.1\|8077101_8078361_+\|type-VII-secretion-associated-serine-protease-mycosin	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	1.07383e-92
NZ_CP050974.1\|WP_168496226.1\|8082582_8083830_+\|S8-family-serine-peptidase	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	1.17385e-70
NZ_CP050974.1\|WP_168496212.1\|8067283_8069155_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.53416e-108
NZ_CP050974.1\|WP_168496218.1\|8075561_8077091_+\|type-VII-secretion-protein-EccB	gnl\|CDD\|368288	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B. EccB is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	5.60117e-65
NZ_CP050974.1\|WP_054232827.1\|8056734_8057190_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.64995e-48
NZ_CP050974.1\|WP_067371255.1\|8056407_8056701_+\|DUF503-domain-containing-protein	gnl\|CDD\|377364	pfam04456, DUF503, Protein of unknown function (DUF503). Family of hypothetical bacterial proteins.	8.27494e-36
NZ_CP050974.1\|WP_168496202.1\|8057186_8058092_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	3.26178e-163
NZ_CP050974.1\|WP_168501331.1\|8066147_8067191_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.15326e-111
NZ_CP050974.1\|WP_168496222.1\|8078477_8079938_+\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	3.2678e-07
NZ_CP050974.1\|WP_168496204.1\|8062116_8063070_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.68777e-151
NZ_CP050974.1\|WP_168496210.1\|8065212_8066151_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.72475e-87
NZ_CP050974.1\|WP_168496230.1\|8084344_8084650_+\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	2.0353e-11
NZ_CP050974.1\|WP_101400982.1\|8052587_8052866_+\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.16917e-23
NZ_CP050974.1\|WP_168496206.1\|8063195_8064200_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.09923e-118
NZ_CP050974.1\|WP_168496224.1\|8080707_8082528_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	1.05858e-05
NZ_CP050974.1\|WP_168496208.1\|8064196_8065216_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.30965e-142

>NZ_CP050974.1|WP_168496212.1|8067283_8069155_-|ABC-transporter-substrate-binding-protein
MNRHDQPNRGRLRPRLLAAAAAAALTLSAGLATPLNPAPQQAQAKGSQQAKESKKVLTVAVAQSVDSLSPFLASRLLSTSIHRLMYEYLTNYDPADNHTVPGLATKWEPSADKLTWTYTIRSNSKWSDGQQATAADAAWTFNKMMTDQGAATANGSFVTNFRKVTAPSPTQLVIELKKPQATMGALDVPIVPQHIWEKVKDFSKFNNDQSFPIVGNGPFVLTDYKADSYVRLKPNKTFWRGAPKFDELVFKYFKDQDAAVAALRKGEVSFVAGSPALTPAQAASLKGEPNIKVNDAPGRRFYALATNPGAQSKDGKHFGDGAESLLNQKVRQALFMAIDRKTLIDKVFQGHAVEGEGYIPPRFSTYYWKPSAGQERAYDPAKAAQLLDAAGYKKNADGKRVEKNGKPIDYRILCHATDPNDKAVGQYVKEWFGKLGIGVTLNCLDNVTDPWLAGKYDLAFDGWSVNPDPDFVLSIHTCGALPATPKDTGATDNFICDKKYDELYDQQLAEYDTAKRADIVKQMESRLYETGYMNVMAYPNAVEAYRTDQIKSIETMPRAAGNIYGQDGYWSWWSAVPADASGASSDGSSSTGVIIGIVAGVVVLAGVGAFFAMRRRATAEDRE
>NZ_CP050974.1|WP_168501331.1|8066147_8067191_-|ABC-transporter-permease-subunit
MVEATDGPALAGPSVREPRARTTTAYLRYVAGKLGGAAVSLLAVLVTSFFLFRLIPGDPVKYMTGGRQVSAEQLAHYREEFGLDLPLWQQFTDYCGKALTGDLGTSYQFRAPVIDKISEALPNTLLLTGTAFVLYTALGIFIGTRSAWRNGGTSDRLNTGLALTLYSIPSFWLGLLLIIVFSVGMGPIPGLFPTGGMESGGKEGFAYVLDVAHHLILPVVTLVAVEYGQTLLVTRSALLDEMGSDYLTTARAKGLRDDLVRRRHAVPNALLPTVTLIFINLGRTVAGVILVETVFSWPGLGGLFYQALSVPDLPLVQGLFFVFASAVIVMNTLADLIYPLLDPRVGR
>NZ_CP050974.1|WP_168496210.1|8065212_8066151_-|ABC-transporter-permease-subunit
MTTESTAAENAAATTTKGPRTLAWQRRRHSAARFWRQYRTHRAGVFGLAALSLFALIALTAPLTVGSDVQSVTDAPGGPMESPSARFPLGTDQFGRNLLGLVVWGARVSLLVGLLAAVLSVAIGALIGITAGHFRGWYSTVIMRITDWFLVMPTLVLAIALMTVMSRSIGTIILAIGVTTWPTTARLVRAQTLAVESRPYIERAKALGGGHWHIMSRHVLPNVMPLVLAQTTLIISSAILAEATLAFLGLGDPTVVSWGGLLQDAREAGAVSAGKWWYLVPPGVAIAVVALAFTLCGRAVESVLNPKLGVTR
>NZ_CP050974.1|WP_168496208.1|8064196_8065216_-|ATP-binding-cassette-domain-containing-protein
MSTPAKRRLLEVRNLEVTYAGGAAAVRGVDLSLDAGQKLGIAGESGCGKSTLALALLRLLPTGTRTSGEILLDGEDVLTMKWGRVRAVRWAGASIVFQGAMHSLNAVHRIGDQIAEPILLHKKATPAGAKKKTGELLEHVGLPAARASAYPHELSGGQRQRVMIAMALACDPRLVIADEPTTALDVMIQAQILRLIEQLVAEQELGLVMISHDLAVLADTCDRLAVMYAGRVVEEGPARHVYEAARHPYGKALSAAFPRIGDAASRFAPRGLPGDPPDPSALPSGCTFHPRCAVALDSCASEDQALREAGAGRWAACVHVGATVPEPGTPAEEARSSAP
>NZ_CP050974.1|WP_168496206.1|8063195_8064200_-|ATP-binding-cassette-domain-containing-protein
MTTTPVPPVTAAPLLRAEGLHIAFPGRHGAARARAVDGVDLDIRPGEIVALVGESGCGKTTLARSLLGLVPPTDGRVTFDGRPLDYSARALKAYRKRVQLVLQDPSGSLNPRHTVYDAVAEGLRIHRYGGDERAAVAEALSRAGLRPPERFFLRYPHELSGGQRQRVVIAGALVLEPELIVADEPVASLDASVRGEILALLLRLRTELGLSALVVTHDLGLAWNIADRVAVMYLGRIVETGEVEKVLTAPRHPYTQALLSVLPEAPGDPVVLTGEPPDPSRIPAGCRFHARCQILASGEAERAGVADACRGEDLEVLNGSGEAQVACHWARLDT
>NZ_CP050974.1|WP_168496204.1|8062116_8063070_+|bifunctional-riboflavin-kinase/FAD-synthetase
MQRWRGLEDIPEDWGRSVVTIGSYDGVHRGHQLIIKHAVDRARELGVPSVMVTFDPHPSEVVRPGSHPPLLAPHHRRAELCAELGVDALLILPFTTEFSKLSPADFVVKVLVDKLHAKAVVEGPNFRFGHKAAGNVDFLREQGKTYDFDVEVVELYVSGSAGGGEPFSSTLTRRLVAEGDVEGAREILGRPHRVEGIVVRGAQRGRELGFPTANVETLPHTAIPADGVYAGWLHVGGEAMPAAISVGTNPQFDGTERTVEAYAIDRVGLDLYGLHVAVDFLAYVRGMAKFDSIEALLEAIADDVKRSRELIEAYEGE
>NZ_CP050974.1|WP_168496202.1|8057186_8058092_+|tRNA-pseudouridine(55)-synthase-TruB
MTQKTKTPDGLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTEKEYLGTIRLGQDTLTDDAEGDITSSTDASRVTREAIDAGIAKLTGRIMQVPSKVSAIKIDGVRSYKRAREGEDFEIPARPVTVSSFAVYDIRDAVAEDGTPVLDLVVSVVCSSGTYIRALARDLGADLGVGGHLTALRRTRVGPYKLDSARTLDQLQEELTVMPIAEAAAAAFPRWDVDTKRARLLLNGVRLEIPEEYAGVGAVAVFDAEGQFLALVEEQKGKAKSLAVFG
>NZ_CP050974.1|WP_054232827.1|8056734_8057190_+|30S-ribosome-binding-factor-RbfA
MADNARAKRLADLIREVVAQKLQRGIKDPRLGTHVTITDTRVTGDLREATVFYTVYGDDEERAAAAAGLESAKGVLRSAVGAAAGVKFTPTLTFVADALPDTAKTIEDLLDKARASDAKVREVSAGATFAGDADPYKKPGEDDETDGDAAE
>NZ_CP050974.1|WP_067371255.1|8056407_8056701_+|DUF503-domain-containing-protein
MYVGTLSFDLLLGDVHSLKEKRSLVRPIVAELQRKYAVSVAETGNQDLHRRAEIGLAMVSGDTEHLTDVLDRCERLVAARPEVELLSVRRRLHTDED
>NZ_CP050974.1|WP_101400982.1|8052587_8052866_+|YlxR-family-protein
MSGRTRARACPERTCVGCRERAAKTDLLRIVAVEGECVPDHRGTLPGRGAYVHPALVCFDLAVRRRAFPRALRAPGPLDTAALRLCVEQATP
>NZ_CP050974.1|WP_168486620.1|8072404_8072701_+|hypothetical-protein
MSAAAENLMVAPLSMSPLPRPASSAGTVGGVQAGCDPDAGTAGDTGAAGGTGAAGGTGAAGSNDTGAADGAGGAGGGGVGEVWAEWPDAFCVYQAGGA
>NZ_CP050974.1|WP_168496214.1|8073163_8074036_-|hypothetical-protein
MAMTTGGATASGAYGNGNPGGFGASGPSGASGDPGARGASGAASAGSPDSLAERGRGRLRSGFGLIGPRHGRHSLSVEEVDSLALPIGDDGVVIGVDAEGQPAVLGLNRPTPYDVVLIGGLWTAQVLALRAAATGARVAVETGRAPAWMQMVHAMGGGQNGMSVHDVGRVPPQGSSAGNPVLVVRDCGMRPPRGRVVSGPWQSVLTLLPYLSPVAPRLLRQARLVGVQRVSPDEAAEIGRALALPRGDVDSLPTLADGVTLWCADRDRQYVMTQPTDAETGLFGTPRRMD
>NZ_CP050974.1|WP_168496216.1|8074035_8075364_-|type-VII-secretion-protein-EccE
MASGTRFRSRDRSREQGSSAPRSQRSAPPARAQGQTGALHLKVRPGQSGSFRLQRIVLLEIAAAALLVGWIVGPFALMPAAVVAVALVLLAFVRRRGRSLPEWLATARALRARQRRAVSTPIPPGTEPGLAPAVECDPGLRTSAYSAQDRRPVGVIGDGTFVTAVLQVEADATALRAERSRQPLPLGLVRDTLDVDDIHLESAQIVLHTQPAPALHLPQQSVAVSNYAPLQEQTGAPAVRITWIALKLDPELCPEAVAARGGGLVGAQKCVVRAADHLASRLTGAGFRTTVLNEEELTAAVATSACANPLVTAEAGRTDLPARRTEESGRSWRCDNRRHTTYWVRRWPQLGGGGGPSLPQLVALLTAVPALATTFSLTLRRGERQEVSLCGHMRVTGRSDDELVAARRSLEHAARQAGTGLARLDREQLPGVLATLPLGGVR
>NZ_CP050974.1|WP_168496218.1|8075561_8077091_+|type-VII-secretion-protein-EccB
MASRRDQLNAYTFAKRRMLASFVQSSPDGSEEGAPRPLRAVLPGTLVGVIIMAAFGAWGMFKPTAPQGWDAVGEKVIIASKSTTRYVVLKTDGKVQLHPVLNMASAKLLLKTGKGDVVTVDESILDRGTIPRGVTIGIPYAPDRLPAASEAGSTKRWAVCERPSAGGRSIQKAAFVLASRDMDKTEGSKQKLRGGELLYVVGPDKTRYIVDASGTSYEVDKNDELLLRTLVGSGREPQRVSKEWLETLHPGDPITFPKVVGQIGTAAGVQGSLSDEANKVGMVLKAPNGATEQYYVVEQGKVAPVSDFTAKLLLNSSDLVSLGQAGKALDVSAGAFVPDAAGFATDHTWPSRMPVPVNEADASDGHRNTVCNVLRDVDKAKGGTTLSTWAGTDFPATLPTGSSSAYVTPGSGQLYRQFQGEETTAGGVFLVTDTGLRYAMQSNDDSATSDAGIGTTAKERKQLEQEARLAQISLGYSDVDPAPIPAAWSKFLPTGPRLSTSAARQPQGS
>NZ_CP050974.1|WP_168496220.1|8077101_8078361_+|type-VII-secretion-associated-serine-protease-mycosin
MSYAPAARPLRTVVVMAATMLASTATVALAPLASADTSTDQCTFPNKKYAGRPWALQRVLLDELWSQSKGKGVRVAVIDTGVDVKNPQLTHAVDTAAGLNLLPKKLKDDNGDPIARGKENGTTDTVGHGTRVAGIIAARPLSGTGFVGLAPESTIIPIQQNDAEGHGTAETLATAIRDAIRAKANVINISQDTSNAVEPAPDLKRAVDEALAADIVVVASAGNDGLGGNDKDTYPASYPGVLAVAASDRNNERASFSQSGDFVGVAAPGVDMISTVPKGGHCSDNGTSFSAPYVAGVAALIKAKHHDWTQQQIVAQIEQTAERSVAGHDRLVGWGVVDPVRALTEDDRPIESPNPDEGLSKAEAPTPAKLQLGETPDERNARLATYVAVGAAVLLAGLSGVAVAVRDARRRKRRVAGAE
>NZ_CP050974.1|WP_168496222.1|8078477_8079938_+|PQQ-binding-like-beta-propeller-repeat-protein
MYTHSALTADGIRKKRRRRLFGGVAVLLIGALCAGSWLLWHGDDDSAVAAGKPTASAEQGPLDIRETVESRPANAAGRMAFRFSADDMAPGESHMMPGMWATDKILAKGINRTLVGFKIGKDATTGDESWRIRLAGPICGTTRHVTVGDRTAVLFRSGVDTHAPCDHVAFVDLDTGKKLWEARFSKVNALYDTPSVTMTRATVAVAWGKGSQAYDMDQGKLLWTSTPPPKCKDGGLAGGRALLIRTDCFDEKSLAGSYRVRKVDPRTGKVKWTYQVAKGVQSVYLVSAEPAVLAVAAGDVEITDLISLDEHGKYRVTIRVEGGHYVADCVDDEEDGAVDNCPTIVVGDGQVFLTSREDPDGTIVNNSNWIIGFDLATGKTVKKFESGHDQLLHPLRMSGDQLLALRESSDHITPMGLVSLNPRTGKETPYLYFDLPSEAWTLTDPTLNDIIVQNGRIFFGTKQASGPSNAKEKAWEWLVLGVGSAG
>NZ_CP050974.1|WP_168496224.1|8080707_8082528_+|hypothetical-protein
MSGDDKAPKELTDQQRVDVQVGQVDALSGVSNVMHDAFGFKRVRLLTYGKVTDFEDHQLNAMIDLVHQANPADLEHAGETLAKASKAINEAAAELRRHLQHAGEDWQGEAGKAFQKWGEGLATHTESLATYADGAGVQVTAAATGLASVRGSLPPRDTRPALDQKKPEQLPVLQQFEGNKQYAEAVQVEKDRQEAINQMNRLASFYSVSGSELAKLQKQDPPVFEAMPSVGVPDPYGSQSDGADGSTGNSNPGSAHRAVASASGGGHLGMSGDASGSRVLASGHPGADANVELHRPTVGTEINSVGTLPPEAAKPTPVTPTPSVTGPNGPSGAMAPPMGMGTGTVPPAFGGPVARAVGLGGAAGGRTPGSAQGRVTTSEGTTAGGRTGRGPAGPIGRASAVGQQAARGPASATGRSPMGRGVTGGMPRSAGTTGSRTGGTPGGRVGGVPGQPAARTGPGATGAARTGGVVGGRPTSEVGPSATGARVPRGTVIGGEGATGARTTGERPGQRGVIGANNPVPGTGQGQSQRRSPGNADSVVGAPSSRAGGRGNGAASGGSGLVSGSAEGRSPDRAAGGRTQRQQHSAEDKKSSRDDARRGDAPSATD
>NZ_CP050974.1|WP_168496226.1|8082582_8083830_+|S8-family-serine-peptidase
MRAALWARRARRHVTTVGATLGALAVMSAGPAPAAAADDIQSQQWYLDAMNAQGLWKVSTGKGISVAVVDTGVNPDTNALKGQVLPGVDVTGTTGDETDDYEGHGTSMAELIAGTGSGGGLKGVAPGAKIIPIRTVLSGIGKKGEKQGDTSAKAIRAAADSDAKIISMSFGTDFPIDGGLEAVQYAQSKGKLLIAGVGNGAEDANYIGYPAKYPGVVGVSAINENGEVAKFSENGAYVDLASPGVDVPTWCDKTFKSYCPQSNGTSQATAITSGAAALIWAAHPKWTANQVLRVMIDTAGRDWPKSTPSRYLGYGTIRPAQVLLKGKGDPGAADVDPVTNKKTPGLSAGTGASPSASASTSSQASNSTSGGQTSAAGSSSDSSGNTTLWVALGAAAAVVVIGGGAFAVIRSRRGV
>NZ_CP050974.1|WP_168496228.1|8083941_8084280_+|hypothetical-protein
MADGRKLDDAHVQKLQTNVIDRYDNVKNHLQKLQGCIDMIEANWTGFGANAFKTKQHEINEHMAGIGRMLDDFLNGIQLTKQDKNKLEDELHSTISSIEVDAGAKTSALNLY
>NZ_CP050974.1|WP_168496230.1|8084344_8084650_+|WXG100-family-type-VII-secretion-target
MTGTPHLQDLAVKYGVLDALATELGGLAKQLESDLTQLKQGVHNAAEGWAGDAYDAFQRKSKEWDNHTSAIHQALLSITQKVHQAGGDYRGGDKKAASFFE

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Crispr_ID: NZ_CP050974_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_13

9481361-9481465

Orphan

Consensus_repeat	Method
TCGCGCAGTTCCCCGCGCCCCTTGCGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_13

>merge|NZ_CP050974|13|9481361-9481465|CRISPRCasFinder
TCGCGCAGTTCCCCGCGCCCCTTGCGGGGCGGGGTGGCTGAGGTCGGGCGGCGGGTGCGGGGCGGTGGGGGTTGATCGCGCAGTTCCCCGCGCCCCTTGCGGGGC

>NZ_CP050974|13|13|9481361-9481465|CRISPRCasFinder
TCGCGCAGTTCCCCGCGCCCCTTGCGGGGC	GGGGTGGCTGAGGTCGGGCGGCGGGTGCGGGGCGGTGGGGGTTGA
TCGCGCAGTTCCCCGCGCCCCTTGCGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168497880.1\|9471032_9472133_+\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|240664
NZ_CP050974.1\|WP_168497891.1\|9477111_9477777_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP050974.1\|WP_168501443.1\|9489188_9490715_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_CP050974.1\|WP_168497894.1\|9479592_9480258_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
NZ_CP050974.1\|WP_168497887.1\|9475976_9476555_-\|WHG-domain-containing-protein	unknown	unknown	gnl\|CDD\|224228
NZ_CP050974.1\|WP_168497905.1\|9488253_9489192_-\|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA	unknown	unknown	gnl\|CDD\|213538
NZ_CP050974.1\|WP_168497889.1\|9476654_9477095_+\|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274679
NZ_CP050974.1\|WP_168497893.1\|9477937_9479290_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP050974.1\|WP_168497882.1\|9472125_9473277_+\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|379865
NZ_CP050974.1\|WP_168497903.1\|9486611_9488261_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_CP050974.1\|WP_168497898.1\|9483562_9484525_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168497907.1\|9490870_9492016_-\|transaldolase	unknown	unknown	gnl\|CDD\|235117
NZ_CP050974.1\|WP_168497901.1\|9485727_9486615_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP050974.1\|WP_168497886.1\|9474567_9475980_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP050974.1\|WP_168497909.1\|9492035_9494111_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP050974.1\|WP_168497900.1\|9485116_9485722_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP050974.1\|WP_168497896.1\|9481514_9483317_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|225726
NZ_CP050974.1\|WP_054234523.1\|9484578_9485034_-\|TerB-family-tellurite-resistance-protein	unknown	unknown	gnl\|CDD\|377455
NZ_CP050974.1\|WP_168497884.1\|9473283_9474510_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP050974.1\|WP_168497878.1\|9469890_9471036_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168497880.1\|9471032_9472133_+\|saccharopine-dehydrogenase	gnl\|CDD\|240664	cd12188, SDH, Saccharopine Dehydrogenase NAD-binding and catalytic domains. Saccharopine Dehydrogenase (SDH) catalyzes the final step in the reversible NAD-dependent oxidative deamination of saccharopine to alpha-ketoglutarate and lysine, in the alpha-aminoadipate pathway of L-lysine biosynthesis. SHD is structurally related to formate dehydrogenase and similar enzymes, having a 2-domain structure in which a Rossmann-fold NAD(P)-binding domain is inserted within the linear sequence of a catalytic domain of related structure.	9.45308e-170
NZ_CP050974.1\|WP_168497891.1\|9477111_9477777_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.64245e-07
NZ_CP050974.1\|WP_168501443.1\|9489188_9490715_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_CP050974.1\|WP_168497894.1\|9479592_9480258_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	1.20982e-57
NZ_CP050974.1\|WP_168497887.1\|9475976_9476555_-\|WHG-domain-containing-protein	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.1552e-11
NZ_CP050974.1\|WP_168497905.1\|9488253_9489192_-\|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA	gnl\|CDD\|213538	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA. The opcA gene is found immediately downstream of zwf, the glucose-6-phosphate dehydrogenase (G6PDH) gene, in a number of species, including Mycobacterium tuberculosis, Streptomyces coelicolor, Nostoc punctiforme, and Synechococcus sp. PCC 7942. In the latter, disruption of opcA was shown to block assembly of G6PDH into active oligomeric forms. [Protein fate, Protein folding and stabilization].	3.86936e-116
NZ_CP050974.1\|WP_168497889.1\|9476654_9477095_+\|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	5.24388e-30
NZ_CP050974.1\|WP_168497893.1\|9477937_9479290_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.39299e-161
NZ_CP050974.1\|WP_168497882.1\|9472125_9473277_+\|saccharopine-dehydrogenase	gnl\|CDD\|379865	pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-terminal domain. This family comprises the C-terminal domain of saccharopine dehydrogenase. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.	2.15908e-47
NZ_CP050974.1\|WP_168497903.1\|9486611_9488261_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_CP050974.1\|WP_168497907.1\|9490870_9492016_-\|transaldolase	gnl\|CDD\|235117	PRK03343, PRK03343, transaldolase; Validated.	0
NZ_CP050974.1\|WP_168497901.1\|9485727_9486615_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP050974.1\|WP_168497886.1\|9474567_9475980_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.2975e-48
NZ_CP050974.1\|WP_168497909.1\|9492035_9494111_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP050974.1\|WP_168497900.1\|9485116_9485722_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.57444e-58
NZ_CP050974.1\|WP_168497896.1\|9481514_9483317_+\|TIM-barrel-protein	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	5.7109e-80
NZ_CP050974.1\|WP_054234523.1\|9484578_9485034_-\|TerB-family-tellurite-resistance-protein	gnl\|CDD\|377455	pfam05099, TerB, Tellurite resistance protein TerB. This family contains the TerB tellurite resistance proteins from a a number of bacteria.	1.19075e-26
NZ_CP050974.1\|WP_168497884.1\|9473283_9474510_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.84945e-65
NZ_CP050974.1\|WP_168497878.1\|9469890_9471036_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	6.63963e-73

>NZ_CP050974.1|WP_168497894.1|9479592_9480258_-|TetR-family-transcriptional-regulator
MTSVEEPARPGGRIRDAARTRAEILDVATQEFSRAGFAGARVDEIAARTRTTKRMIYYYFGGKEQLFTAVLERAYSVIRMAEQELDVEHLDPVAAIRRLAELTFDHHEAHPDFIRLVSIENIHEAEHIAASEELGKIGSPALEVIRRILETGRRSGLFTADVDAVDLHAMISSFCFFRVSNRHTFGALFGRDLVAPDQREHYRTMLGDMVIAYLTADRTQD
>NZ_CP050974.1|WP_168497893.1|9477937_9479290_-|MFS-transporter
MSVPAVPLDAPPGQPRKAAMAAWIGSALEYYDFFIYGSAAALIFPKVFFDESDPATATLLSLATFGVAYAARPVGALFLGHFGDRVGRKKIMVFTLILMGLSTFLIGCLPTRAQVGGLAPVLLVLCRVLQGISAAGEQASANSMTLEHAPPNRRGFFTSFTLSGTQGGQLLATLVFLPVAALPEDQLLSWGWRVPFWASVAVAVVGYVIRRTLQETPAFTQQAASEGVPKLPLLVLLREHWADVLRVVAGALIASVSTIFTVWALAYGTSDSVGLSRTQMLWVGALANVVALGAIPAWATLSDRIGRRPVYLIGAAGSAVLMFAYLWAISTGSYPLVLLFGILAFGVVYSAANGVWPSFYGEMFSTRVRLSGMAIGTQIGFAVAGFAVTFAAQIAGPGGDDWSSVALFTAALCVPPVIAALTARETHTVPTEELGERVPRDAAKRETVTA
>NZ_CP050974.1|WP_168497891.1|9477111_9477777_+|TetR-family-transcriptional-regulator
MTVSERGPRERMVFSAAQLIRRDGVTATGMREVAAHARAPRGSLQHYFPVGKEQLVNEAVDWAGGYAGKRVARFLAALSRPTPSGLFAAMVQQWTNEFQEAGFASGCPVAAATVDCAESTESTRTAAAAAFARWNRAVAEALTDMGVPAGRAEPLATLMISALEGALLIARAERDVRALTAVTHELGPLLDGARTVSRGSMGSPRTPAAPEPGRGARSGSV
>NZ_CP050974.1|WP_168497889.1|9476654_9477095_+|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase
MTQDATQDTLLKLLSEYDGGVLVTLKKDGRPQLSNVNHAYDPDERIVRVSITDDRAKTRNLRRDPRASYHVTAEDRWAYTVAEGTAELTPVARDPHDETVEELVRLYRAVRGEHPDWDDYRAAMVSDGRLVLRLHVERAYGIPRGR
>NZ_CP050974.1|WP_168497887.1|9475976_9476555_-|WHG-domain-containing-protein
MSEAETGLRARLIEAGVDLVTTQGAQVLTLREIARRAGVSHGAPRRYFPTHLELLSAIARRGFADLGARATEALVDEGASPRAQLATLGRVYLDFAFTQPGMYELMFRHDLLESGRLGLRETSLPLFGVLVDLVGRARPAADATLVASALWANLHGIAQLWGWGSLQLATGAADFVPLLDAALDAHLGPEER
>NZ_CP050974.1|WP_168497886.1|9474567_9475980_-|MFS-transporter
MNPSARRRLTLTNSVVGAVIVALDGTVLTVAQPTLRRDLDASFAQVQWTSTGYLIAVAGLLVFAGRLGDRYGHQVVFAVGMVGFGAASAGIGLAPGIGWVIGLRVAQGVFGALSQPATLGMLRAAYPPDRLGMPIALRTSAIGLAAAAGPLLGGALVTQLGWRAVFFLNVVPALVMAALALTVRDAPRDRDSAAGLDVPGAALLSVTLVALVHTLVVLPETGRPMATVLGPLVATAAAAAFVRHERRAASPLVPPGLLGSPTVGAALGTLVCASATLFGTLFVSTYYLQDVLGLDPLQSSLRALPLAVMTVLGAPVSAVLLRRYGPRRTTGTAMLLVLLGVLLLSRLDRASTDLAIGVGFLLLGAGFVAVMVSATAVVVRSASAGSAGVAGGLQQTAMNIGPTVGVAVATTLVGLAGVDMGPALSVLAALTAVGALSALRLPGRGEAPDAERRPAGHPPTDAACEVRTRR
>NZ_CP050974.1|WP_168497884.1|9473283_9474510_-|serine-hydrolase
MGHLRQEVEPNEAGLDPKALARLDQHFSHLVDDLRLPGYLVSVSRHGRVAHLTTYGHRDREARLPVETDTLWRIYSMTKPVTSVAALMLLEEGRFRLDDPVARFLPAFAEPRVYVSGSGAGMKTRPAEQPLLIRHLLTHTSGLTFGFYHSHPVDALYRDAGLESSVAPGSDLAGTCDVYAGLPLQFEPGTEWNYSVSTNVLGRLIEVVSGQDLDEFLAERIFGPLGMADAGFCVTDEQAGRLAQLYGQDAEGRITPITGLPLHGRPRFLSGSGGMVASAHDYHRFMEMLRRRGELDGARLLKPETVDTMAANHLPGGTDRRTFGSALHREPGNAGLGFGLGVSVVVDPEITRSPSSEGAFGWSGVASTTFWVDPRHDLTVQFYTQVRPTSSHSIYPELKRLVHEAVLD
>NZ_CP050974.1|WP_168497882.1|9472125_9473277_+|saccharopine-dehydrogenase
MSEVTAASGTVHWIGAGLSTGSGLAATCDAADRVRLWHRTEERAARSLEALGLTGRAEPRAYTLDALAAELTPGDVVVSMLPAPEHAPLLGVCVERGAHFACSSYVSDAVLDQVPAAEAAGVVVLTECGLDPGIDHLFAHSLIARAEAEIGAESAASYRLTSYCGGIPAVPNDFKYRFSWAPAGVLNALRSPARYVEDGTETTADRPWEATRPHLIDGEAFEVYPNRDSVPFVEQYGLPGTWKPETFVRGTLRLDGWLRAWDAVFEELKAGDDRRITDLAQELAKTYPTTDADRDRVVLAVSLDVRGGSGAAWSGRYLLDLVGTAEESAMARCVSRTLALGVRHILDGSLPPGLGRAAETARRSEQWLAELAREGVPFTLHAG
>NZ_CP050974.1|WP_168497880.1|9471032_9472133_+|saccharopine-dehydrogenase
MTELHLWLRHEIRTTERRTPIVPSDARRLVESGVTLTVEESPQRVFPIEAYENAGCRVAKAGSWVSAPPDAVVVGLKELPDGPAELTHRHVFFGHAYKRQPGAAALLHRFIAGGGALLDIEYLVHDDGRRLAAFGYWAGYLGAALAVLHHRGSLKAPLRPMSKEELDAELASEKGELRALVIGALGRSGRGARVALGVAGVEPTCWDLDETRELDRPALLAHELMVNTVLTTRPIPPFLTDRDLDEPGRRLRTLCDVTCDVGSPLNVLPIYDTTTDWTHPARRIRERPALDLIAIDNLPSLLPLEASVDFSAALLPQLLEFGVGGPWGRCLDRFHEACRALEAEEAEEAGEVEEEEKTEEGESRDV
>NZ_CP050974.1|WP_168497878.1|9469890_9471036_+|FAD-dependent-oxidoreductase
MTGSARVVVIGGGVMGTSIAYHLARAGVPDVVLVERDELASGSTSRAAGGVRAQFSDELNIQLGARSLEAFVRFGEELGQDIGLHQVGYLFLLSTPEEVAAFEDGVRLQNALGVPSRLIDPAEARRLSPLITTDGLRAAAFSPDDGHCTPESVVQGYAAGARRHGATLLRHREVTGIETRGDEITAVVTSQGRIATDTVVCAAGAWSRAIGAMVGVDLPVEPLRRQIAVTEAVPGLPPDLPMTIDFTTSLYFHSEGPGLLLGMSDPDEVPGFATTTHDRWIPRLSEAMERRAPALLDLRRTGGWAGLYEITPDHNALIGEAPSCSRFLYATGFSGHGFLQGPAVGEVIRDLYLGRVPFVDISPLSVERFTADAPRPEVNLV
>NZ_CP050974.1|WP_168497896.1|9481514_9483317_+|TIM-barrel-protein
MRTSIATVSLSGSLTEKLTAAGRAGFDGVEIFENDLLASPLTPEEIRARTADLGLSIDLYQPMRDIEAVPEEEFARNLRRARHKFELMRRLGTDTVLVCSSVSPLAVDDDALAADQLRRLADLAQDFGMRVAYEALAWGRHVSTYDHAWSIVEAADHPALGTCLDSFHILARGGDPKGIEDIPGEKIFFLQLADAPLMAMDVLQWSRHYRCFPGQGGFDIAGFLGHVLRAGYRGPLSLEVFNDVFRQAEAGPTAVDARRSLLVLQEATGLAAPPAPVVPTGVAFAELVTSDAEPVTALLGALGFTRSARHRSKPVDLWQQGEARVLVNTGPAARRDGTALAAVGLESPDPAAAARRAESLLAPVLPRRRAPEDAPLDAVAAPDGTELFFCVTDRSGHPELASWTGDFVPVPHERLPQHVARIDHLALTQPWHQFDEAALFHRSVLGLSAQDSVDVADPYGLHRSRAVTSADGSVRIALGVGPAPTDEGARAQHIALASDDVVTAARRFREAGGRLLAMPANYYDDLAARYEFADGELAAYRELGILYDRDAEGEFRHCYTETVGRVFFELVQRDGGYRGYGAQNAPVRLAAQHLPRRPGR
>NZ_CP050974.1|WP_168497898.1|9483562_9484525_+|hypothetical-protein
MPGDRFTPDFDPDYGDAPLSTARKDIANGRWQGLRDLLRVTGPAWSVRAHRIRLLAPACAGNSAVESWLAAEPRSADALVLRAATEVARAFTLATAAGGRVPVEQRRVDRAVLACLQGAEAYPEDPTPWICLISVARLYAAGVRRQELGRWWDELHARDPYTIEGHLHVLRYYSARWHGTHALMYDFARDAASVAPPGCALPVLVQFARVEEYRFLQEEAKGRPDAPVDLDGHWNHEGAVDDVRRTWQRWISARPDGQPAPEEVRDLNYLAHAASYAGQWDLAAPLFRTLGVRASRMPWSRTGDPEAEYVKWRRRATRGA
>NZ_CP050974.1|WP_054234523.1|9484578_9485034_-|TerB-family-tellurite-resistance-protein
MALWDRIKESASTMQTQLVAKKNDLKSGAFRDASMAMCALVAAADGTVDPSERQRVAQLIATNEVLQNFDADDLRRRFDDNLNKLTADFAFGKVSVLQEIAKAKKKPAEARAVIQIGIVIGGADGDFDKTEQAVVREACFTLDLPPHEFDL
>NZ_CP050974.1|WP_168497900.1|9485116_9485722_-|histidine-phosphatase-family-protein
MGDLLLVRHGETEWSVSGQHTSWTDLPLTQHGEEQAKSLAPLLAGRTFALALTSPLGRAIRTAELAGVYGAVADPDLHEWDYGAYEGITTVEIHRTRPDWFLWNDGVPSGPDGRPGESPAEVGERADRVLSRVGPALADGDVILVAHAHFLRVLTARRLGLSPADGRLFQLATGTVSRLSTEHGHPVIAEWNAAGTSVAVR
>NZ_CP050974.1|WP_168497901.1|9485727_9486615_-|decarboxylating-6-phosphogluconate-dehydrogenase
MTVMQLGLIGLGKMGGNMRERIRRAGHTVVGYDRNPEVSDVSSLTELVSALEGPRVVWVMVPAGAATQSTIDQLGELLEPGDTVVDGGNSRWTDDEKHAEELAAKGIGFVDAGVSGGVWGLKNGYALMVGGDAEHIAKVQPVFDALKPEGDAGFVHAGKVGAGHFSKMVHNGIEYAMMQAYAEGWELLEKVHSVTDVREVFRSWQEGTVIRSWLLDLAVNALDDDEHLEKLRGYADDSGEGRWTVEAAIDNAVPLPAITASLFARFASRQDDSPQMKMIAALRNQFGGHAVESAK
>NZ_CP050974.1|WP_168497903.1|9486611_9488261_-|glucose-6-phosphate-isomerase
MSDSPKLTRRPEWVALEDHRADGLLHPRLRELFAADPARAERYVVRVGDLRIDYSKHLITDETLALLQELATATDVFGLRDAMFRGERINVTEDRAVLHTALRAPRNAVIEVDGENVVPGVHTVLDKMADFAERVRAGEWTGHTGRPIRNVVNIGIGGSDLGPAMAYEALRAFTDRSLTVRFVSNVDGADLHEAVRDLDPAETLFIIASKTFTTIETITNATSARTWLLAALEGDEKAVAKHFVALSTNAGKVSDFGIDTANMFGFWDWVGGRYSFDSAIGLSLMIAIGPDRFRELLDGFRIVDEHFRTAPAEANAPLLLGLLGVWYGNFFDAQSHAVLPYSHYLSKFTAYLQQLDMESNGKSVDRDGNPVEWQTGPVVWGTPGTNGQHAYYQLIHQGTKLIPADFIGFANPVDELEPELAAQHDLLMANFFAQTQALAFGKTPDEVRAEGVPEELVPHKTFKGNHPTTTILASELTPSVLGQLIALYEHKVFVQGAIWNIDSFDQWGVELGKVLAKRVEPALTEGADVPGLDPSTAALVAAYRTLRKK
>NZ_CP050974.1|WP_168497905.1|9488253_9489192_-|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA
MKIDLTDTTASKINKALVQGRRTIGTPAVGMVLTMVIVTDEENAYDSIKAAEEASREHPSRTLVVIKRHARTPRDRTNSRLDAEVRVGADSGAGETVVLRTYGEVSDHADSVVLPLLLPDAPVVVWWPVDAPEVPAKDPLGALAQRRITDMYAVESPLTALEARVNSYAPGDTDLAWTRLTPWRSMLAAALDQARTKVISAAVESEADNPSAELLARWLGARLDVPVERVVTAGPVVTAVRLGTENGEIVIDRPEGPLATLSLPGQPSRTLALKVRSTSELIAEELRRLDADEMYAVALRGEGGTKETPRHV
>NZ_CP050974.1|WP_168501443.1|9489188_9490715_-|glucose-6-phosphate-dehydrogenase
MAEWENPLRDPRDRRLPRIAGPSGLVIFGVTGDLSRKKLMPAVYDLANRGLLPPGFSLVGFARRDWEDEDFAQIVHDSVKEHARTPFREEVWQQLAEGMRFIPGTFDDDTAFKQLRSAIEELDAARGTSGNYAFYLSVPPKFFPKVVQQLKKHGLASPPEGSWRRAVIEKPFGHDLESARELNALVHDVFDPEQVFRIDHYLGKETVQNILALRFANQMYEPIWNRSYVDHVQITMAEDIGIGGRAGYYDGIGSARDVIQNHLLQLMALTAMEEPIAFDAESLLTEKLKVLKSVKLPENLGEHTVRGQYAAAWQGGEKVRGYLQEEGIDPKSTTDTYAAVKLEVDNRRWAGVPFYLRTGKRLGRRVTEIAVVFQRAPHSPFDSTATEELGQNAIVIRVQPDEGMTVRFGSKVPGTSMEIRDVTMDFAYGESFTESSPEAYERLILDVLLGDANLFPRHQEVEESWKVLDPIEDYWETHGKPAQYPSGSWGPKEADEMLARDGRSWRRP
>NZ_CP050974.1|WP_168497907.1|9490870_9492016_-|transaldolase
MITVTETTATAVTLKRLSDEGVSIWLDDLSRKRIASGNLAELVETRHVVGVTTNPSIFQAAIGSGEGYEEQLADLAERGVTVDEAVRMMTTADVRAAADILRPVYDATAGRDGRVSIEVDPRLAHNTRATVAEAKQLAWLVDRPNVMIKIPATKAGLPAITEVIGLGISVNVTLIFSLERYREVMDAYLAGLEKAKAAGIDLATIHSVASFFVSRVDSEIDKRLTKVGTDEALALKGRAALANARLAYEAYEEVFASARWTALAPAGANKQRPLWASTGVKDPSYKDTLYVDELVAPGTVNTMPEATLNATADHGDIHGDAVTGGYAQARADLAAVEGLGISYDEVVDLLEDEGVSKFEAAWGDLLDAVATSLSSKGVEGE
>NZ_CP050974.1|WP_168497909.1|9492035_9494111_-|transketolase
MSAQSPDGFEWTELDRRAVDTARILAADAVQKVGNGHPGTAMSLAPAAYTIFQKVMRHDPADPEWTGRDRFVLSPGHTSLTLYTQLFLSGYELGLDDLKAFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAPEGESPFDHTIWGIVSDGDLEEGISAEASSLAGHQKLGNLVFVYDDNHISIEGDTATAFSEDVLGRYEAYGWHVQRIEPSADGDIDVRALYTALKAAQAETGRPSIIAMRTIIAWPAPNARNTEASHGSALGADEVAATKRLLGFDAEKSFEVAGEVLAHARQALDRGAEAHAAWDKHIAEWRTAQPERARLFDRIVAGQLPEGWQEKLPAFEAGTSVATRAASGKVLQALGSVIPELWGGSADLAGSNNTTIDKTSSFLPKGNPLPEADPYGRTVHFGIREHSMAAEMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMQLPVTYVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNIVRPADANETAIAWAEILKRHATNPAPHGLALTRQGVPTYEANSDAAKGGYVLRDSSTETPDLVLIATGSEVHLAVEARELLEAEGIGTRVVSMPSVEWFEEQSTEYRASVLPPSVKARVAVEAGIGLTWYRYVGDHGRIVSLEHFGASADAKTLFAAFGFTAENVAAAARESLTAARG

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Crispr_ID: NZ_CP050974_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050974_14

11953654-11953743

Orphan

Consensus_repeat	Method
CGGCTCACACCCGCCTGCGCGGGGAGGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050974_14

>merge|NZ_CP050974|14|11953654-11953743|CRISPRCasFinder
CGGCTCACACCCGCCTGCGCGGGGAGGACCGCACGGAGACCCCGAACGCCGCCGCCACCGTCGGCTCACCCCCGCCTGCGCGGGGAGGAC

>NZ_CP050974|14|14|11953654-11953743|CRISPRCasFinder
CGGCTCACACCCGCCTGCGCGGGGAGGAC	CGCACGGAGACCCCGAACGCCGCCGCCACCGT
CGGCTCACCCCCGCCTGCGCGGGGAGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050974.1\|WP_168500571.1\|11952994_11953540_-\|plasmid-pRiA4b-ORF-3-family-protein	unknown	unknown	gnl\|CDD\|377943
NZ_CP050974.1\|WP_168501675.1\|11961213_11961747_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500566.1\|11946134_11949917_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NZ_CP050974.1\|WP_168500578.1\|11964147_11964393_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500568.1\|11951193_11951646_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500574.1\|11955852_11956707_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|226119
NZ_CP050974.1\|WP_168500567.1\|11950014_11950446_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500565.1\|11944740_11945778_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119374
NZ_CP050974.1\|WP_168500575.1\|11956853_11957099_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500569.1\|11951700_11952381_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500576.1\|11957574_11958450_-\|DNA-ligase	unknown	unknown	gnl\|CDD\|185714
NZ_CP050974.1\|WP_168500570.1\|11952589_11952964_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500577.1\|11962413_11962863_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500579.1\|11964505_11965669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050974.1\|WP_168500572.1\|11953923_11954751_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|252734
NZ_CP050974.1\|WP_168501674.1\|11943029_11943572_-\|ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl\|CDD\|366226
NZ_CP050974.1\|WP_168500564.1\|11943598_11944105_-\|ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl\|CDD\|366226
NZ_CP050974.1\|WP_168500563.1\|11942345_11942708_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372705
NZ_CP050974.1\|WP_168501676.1\|11963506_11964043_-\|DUF1707-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP050974.1\|WP_168500573.1\|11954934_11955552_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP050974.1\|WP_168500571.1\|11952994_11953540_-\|plasmid-pRiA4b-ORF-3-family-protein	gnl\|CDD\|377943	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein. Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumorigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases, but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.	3.54792e-10
NZ_CP050974.1\|WP_168500574.1\|11955852_11956707_+\|trypsin-like-serine-protease	gnl\|CDD\|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	2.57371e-07
NZ_CP050974.1\|WP_168500576.1\|11957574_11958450_-\|DNA-ligase	gnl\|CDD\|185714	cd07905, Adenylation_DNA_ligase_LigC, Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is common to all members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many of the active-site residues. The common catalytic core unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases.	4.29993e-57
NZ_CP050974.1\|WP_168500566.1\|11946134_11949917_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.95286e-76
NZ_CP050974.1\|WP_168500572.1\|11953923_11954751_+\|SAM-dependent-methyltransferase	gnl\|CDD\|252734	pfam04672, Methyltransf_19, S-adenosyl methyltransferase. This family contains a SAM (S-adenosyl methyltransferase) domain, with a central beta sheet with 3 alpha-helices on both sides. Crystal packing analysis of the structure Structure 3giw suggests that a monomer is the solution state oligomeric form. An unidentified ligand (UNL, cyan) was found at the putative active site surrounded by the residues His57, His170, Phe171, Tyr216 and Met22. The UNL is likely to be a phenylalanine or phenylalanine-like molecule. (details derived from TOPSAN).	2.46392e-125
NZ_CP050974.1\|WP_168501674.1\|11943029_11943572_-\|ricin-type-beta-trefoil-lectin-domain-protein	gnl\|CDD\|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	2.1732e-26
NZ_CP050974.1\|WP_168500564.1\|11943598_11944105_-\|ricin-type-beta-trefoil-lectin-domain-protein	gnl\|CDD\|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	1.71565e-20
NZ_CP050974.1\|WP_168500563.1\|11942345_11942708_+\|hypothetical-protein	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.7323e-15
NZ_CP050974.1\|WP_168500565.1\|11944740_11945778_-\|hypothetical-protein	gnl\|CDD\|119374	cd06412, GH25_CH-type, CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.	6.28964e-97
NZ_CP050974.1\|WP_168501676.1\|11963506_11964043_-\|DUF1707-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	6.35159e-18

>NZ_CP050974.1|WP_168500571.1|11952994_11953540_-|plasmid-pRiA4b-ORF-3-family-protein
MARTWLSIRVELVSGHGADLWPRPGRVFAAARSHSFAQFATAIDCAFGRWDLAHLHLFTLSDGARVSPLDWWDDEAPGGTVDGHATKLSRLQPSEQFAYVFDMGDGWAHLCTVAEKRIDPLDELGEAPDRPVPYWGWGSLPDQYARRWDGDDRESPMPKRPARGLSDLPPILPWWGERRRG
>NZ_CP050974.1|WP_168500570.1|11952589_11952964_-|hypothetical-protein
MGNRSGHGGELKWPRAGKSNWPLATALTIHAVTGADIPQLALIRGIDIDETATTVKVHCSTAHRRCRLYPLPTWTRRLARAAGIHGQLNDRSPDSPLFPLITVQDGEQLRLTATGIRYHLKPTP
>NZ_CP050974.1|WP_168500569.1|11951700_11952381_-|hypothetical-protein
MTVYDVARQLPTVAVLRDLCRSLAMLDAILSPDWEGRYYSLNASWADGQEMASMRNGSGDEYSIVFSAAGAYVRGFGHESPMSPYGNDGEPWPGVIDEVPELFKPFVEEAAFTDEDGVPVVTACLWRGATDDRWHHGTIDFPEGAVDPDGATRLFELLVDRSPEAFQRFAEDYYEVSVDLGMVGHVYALRPLTQEAVSLLNPEISLRDLAQDISEIGYPQPDQGSL
>NZ_CP050974.1|WP_168500568.1|11951193_11951646_-|hypothetical-protein
MAADIAFFLAPDDQTAAATRLRGPGRAFDSVTCSSIEPDSSIAEWDMYFEAPSAELPPLEQLHAWAWPKWITPPLNDGIEVFALPVRLTRALANASSSELVELAARWTTRLRRADGDDMTADDPLAILQGVARLAAAAVNSGGGLYCWSY
>NZ_CP050974.1|WP_168500567.1|11950014_11950446_-|hypothetical-protein
MKERFRLAAATAAACLAGGALLAGAGPATAQAQEQPAQHLAPAATTRSSCGGNVVVTPVKYTYGTASCSVWGSPGLKITYHWTTGDGYAAMQAYGMDAAGTGHWYNCGSGGGSCTVPWGNEIARPRVRGWDAVRAATIYFSIG
>NZ_CP050974.1|WP_168500566.1|11946134_11949917_+|helix-turn-helix-domain-containing-protein
MGRREGPLDPAAGPVQRFAFELRKLRQDAGRLTYSVMAQRTGYSVATLSRAAAGDQLPSLAVALAYVRACGADPEEWEERWHAAAREAAAELEDGDDTDAPYRGLARFEPGDQGLFFGRDQLVAQLTEHVRTRRMVAVVGASGSGKSSLLRAGLIPSLQRQGSSGCRLAAIRILTPGPHPLSTHGDVLTARREPGDTVIVVDQFEELFTLCRDPAERAAFLDLLVTAVEPDSRLRVVIALRADFLGRCAEHRPLAAALRDANLLLGPMGPAELRDATVKPAAARGLIVERALSARIVEDVAEEPGGLPLMSHALLETWRRRKGRTLTLVAYEAAGGVHGALTRTAEELYGRLSPEQAEAARRILLRLITPGEGAQDTSRPANRAELQAQDAPDQPGDTASVLEQLARARLITLDGDTVHLAHEALITAWPRLQSWIDGARDRLRAHRQITESASTWDALDRDPGALYRGTRLATAEEHFAADHADLTPLEYAFLDASIATRERERQAAARTARRFRALLAAMTVLLLLASTAAVVAFQQRTLARAGRDRAVAEQAVAEAGQLNATDPSLAARIYTAAHRLRPDREAAVGLLNTQNLALSSVLSGHSQAVYAVAFSPDGRTLATGAGDDTIRLWSLADPARPVPLGRPLTGHRDWVYWLQFSPDGRTLASASRDHTARLWDVADPRHPKALGRPLTGHRDYVFSVSFSRDGRTLATAGHDHTVRLWDVSDPEHARPLGHPLIGAKDSVASAAFSPDGRTVAAPGHDHMIRLWNVTDPTHPKLWRTPLRNPDVVYAVAFRHDSRLMASVGNDFKVRLWDVADPAHAKPLGEPLTGHSDTLLAVAFSPDGRTLATGGADHTIRLWDVSDPRHPAVLGQPLIGHAGFVNWLAFSPDGRSLASASDDHTVRLWHLPRTVLADHLGNVTSIAFSPDGRSMAGASDGTVRLWDVSTPTRARQLSELPTQNTATRVAFQPGGRLLASLGSNDGTVRLWDVSDPRRPRPVATARTDGTRQGEALAFTPDGHILITGGPQHSLQLWNVTDPAHPARLGSPLTGHISFVHWAGVSPDGYTLASTSEDDKVRLWDIRDPARPRALPDIRTGDTGGTYWGAFSPDGRLLATAGAGHDVRVWNVSTPAHASAVGRSLTGHTGAVTWAGFSPDGRTLAAAGDDRTVLLWDMADPARPASWGKGLTAGHTAAIETAAYRPDGRLLATAGTDGTIQLTPLGLDQAIRRICASTAGLLTPAQWSDDIPELDYAPPCRD
>NZ_CP050974.1|WP_168500565.1|11944740_11945778_-|hypothetical-protein
MAYFLKTPRRGSSARVRRGVRAGVFGALATVTATAALLATPVAASAAAHGTRPQQAADTAVRGLDVSAYQETVDWPSVAADGASFAYVKATEGTSYISSRFLQQYNGAAAAGLIRGAYHFARPDKSTGNAQADYFVDHGGAWRPDGKTLPGVLDVEPTPGLPACYGVSPSETVRWIAAFDDEYLRRTGRHAVINTNTSWWSQCTGNSSAFAAPNLLWIGSYTGTPHPLPNGWSTYAVWQTSDSGTFPGDQDLFNGTEADLRRFAASGTYTPPPPPPVGAWPVVQQGYAGRQVTTLQYLLNARGAALSVDGAFGPATHDAVVAFQTRNQLPPDGVVGPNTWIVLVN
>NZ_CP050974.1|WP_168500564.1|11943598_11944105_-|ricin-type-beta-trefoil-lectin-domain-protein
MTFTGPAAGASTASSPGTVLQNVAGAADNVYYIKNQHSGKCMTVHGASTAKGARIDQYRCISGAQNQWWVVYKLHVGGLVRVTGYQSGKCLSILGGSKRKGAPLVQWTCNGASDQLFAGHLAFGGKTAIKSYHSGKCLDVQGGSTSNNAPIIQWSCNGRTNQKWYLTG
>NZ_CP050974.1|WP_168501674.1|11943029_11943572_-|ricin-type-beta-trefoil-lectin-domain-protein
MLLAWAVTGLISTSATSGAGEAAPAAFPHEQSATKTASSASSVVGYIKNRHSGKCLTVHGASKANNARVDQYTCVGAANQRWTFEWTGGWSYALRNAHSGKCLTVHGASKAKGAAIDQYTCVGASNQSFYINIGTPSKTPLKAAHSKKCLDVRGGSTANNAAVIQWTCNGRTNQLWSIPD
>NZ_CP050974.1|WP_168500563.1|11942345_11942708_+|hypothetical-protein
MTAPTNENLTAPGPDRLIATGNSRDLPRLGEDLGLLPSDADARTRMTHRLASTDGATLYKRRAATVEPVNGHLKDRTGLRRFSRRGLAACQAELDFAALVLNLRKVLSLAPDERAAALTA
>NZ_CP050974.1|WP_168500572.1|11953923_11954751_+|SAM-dependent-methyltransferase
MTAMTYEGSSIDPAKPSIARVYDYLLGGKDNYAVDREIGDVFKRDLPGSVAIAFANRAALTRAVREIATTTGIRQFIDLGSGLPTADNVHQVAQRHAPESRVVYVDIDPQVLVHGRALLENNDRTRVVAVDVRNPEGIHTHPDTQEIIDFTRPVAVILSAILHHVNDDEDPAGIVRYWRDHVPSGSYFFISHFRSGNNPETAEAEKVLQQTFGRGRWRTDAEIASLLDGLEILDPGIVPASLWRPDESDNPWNSGERRELTVWEHLIAAGLARKA
>NZ_CP050974.1|WP_168500573.1|11954934_11955552_-|hypothetical-protein
MTTYGTILIPVPLEQAAPVLREVCTAGYATPAGPRFCLAHPDRFVDGNGVFALAGPISAELGVPVLAAFQYDGDRLELEVWRDGVRAHRYDSWPDRDDESANDAPLGADPAAFLDFATGPVDSHRLASALADTPIDAEDMDVDGEPGYVWAQALHWDVLRALSHPNQVIRRAQWDYCHMCGAPQALAEVLGSTELVVLGTADRPF
>NZ_CP050974.1|WP_168500574.1|11955852_11956707_+|trypsin-like-serine-protease
MKAGIALTLVIVGAAAVVGSAAEETYPSRSSGRSSYGKSGEPGQTPQDQGPSANAPAQDGTAYTPRRTDENARIGTVFEKDDHGAHFCTASVVQSPGRNMLITAAHCAFDADAGKPVDDLVFAPDYRNGNEPTGLWKVSKVVVDDRWAKSQDEDLDVAFLTVGPKDGKNIQDVLGGNSLGIDRGFNNEVEITGYPTSRDTPISCQNRTTKFSDTQLRIHCTDFEGGTSGSPWLADYDPKSHTGTVIGVLGGHEGGGDQDDVSYAAYFDNDIARLYQRAQDKDGN
>NZ_CP050974.1|WP_168500575.1|11956853_11957099_-|hypothetical-protein
MSVYVILLPEAIADVDRREDREALAMPYEDEPGAGVYKYEVLPSGALMVWRTFPDSSAVPEATFGPSAWSHVRGSFFGSND
>NZ_CP050974.1|WP_168500576.1|11957574_11958450_-|DNA-ligase
MDWPVSVALAQSVPKLPTGTDWSYEVKLDGHRMIMWRTDDGVRLQARSGRDVTAAWGDLALAGHHLPAGTVLDGEAVITTEDGRISFEAAQARAASSPARAHRLAAQRPAHYIAFDALQLPPPNRDIRARPYAARRAALLNLLANLPANTQIQAVSATTDRDTALTWYNTPHNQGVEGIVAKRTTSPYRAGRTGAWLKIHHADTIEATVAGFTGTARQPRALAVRLPDGRVALSQRLTTALATRIAPRLVPQPGRAHAQGGDAYTPVSGEIVVEVVAGTTRHAVVTVVRLR
>NZ_CP050974.1|WP_168501675.1|11961213_11961747_+|hypothetical-protein
MMTRSHAVTAAVAVATALAATGITYASAASQPAQAVHAPFGGSSSGNESKGNEGRNNEGRNNEGRNEGRGNEGREFHEEGRIQINERSYSARPGDCITVVSGLGAKTLNIRNDSRKTVEVFRGAVCDNGAPVATVGPHSQSDGVHVDCVDGIHVDDGVVGSFRVIRDRDDHGDREQS
>NZ_CP050974.1|WP_168500577.1|11962413_11962863_+|hypothetical-protein
MSIRLVEDASDDSYVLDILDITLIPAWPRLGHQLRCEMDGRLKETVDLTRVTCNVIMKIGPVKMLERSYRLPDLLADMGAGLSGETKPPAGPWKHTWNFRIPETVPVAEHRIHLRARTGDGKDFFALDIPVDFSRRFPRSRSGSTGWDG
>NZ_CP050974.1|WP_168501676.1|11963506_11964043_-|DUF1707-domain-containing-protein
MPHRLHHTGHLPRRHQPGPRHVQTHTTSHLSRLRGVLPSLRHGRIGGAQGVRRGLGRHAGLASLPVLRASDAERERVEAQLQHHYAVGRLTLPELEERVAVAYEARTREQLDALLTDLPGEAEEPPSPTHVIDPRLLITLLCTSPPAALAYWLISQRAAHRRGPRPRALGDGPEYGAS
>NZ_CP050974.1|WP_168500578.1|11964147_11964393_+|hypothetical-protein
MAGEGRGGAGLPQLRVALCEALGLPSGALTHRAGPASQALMWALAEPGVLFLDDAQRLTPLLLLDYLRQLWDAPGCAAARP
>NZ_CP050974.1|WP_168500579.1|11964505_11965669_-|hypothetical-protein
MTQRIKELLDSDFSAASALGEEIRRRVSSGDFEWATLLGAELARRAAREGEDSSEHAFLLDRLQTALAATAGQRSLRALMCLPSSLPAEGPAQIRAERRLAQLVALGQRPEDIVSVVYDEEPGIAASDEFKACLLHELVLEDVAVPEYPLLRSFGEALVTQQHPLAPLPLRLLSTERALLRPAHAPRDWTWTLPPATVKEHSDRPELHVSAEMRRRGAEFDPVDVTVPEAAEAMGAAVRHWREESNGTVVAQEFWCTSPVSADDFAAVFERLPLTPWPGKEQRARLHPAASDRVLRVLLTAAVRSPAYGSGMFGAYGRLAVWRSLGGLVGAAPDAPVDDTAMLVEQAHWFIADPSSDWFHQVAWDLAVAVLRPGGQDIAVLAATDTD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP050974_12	12.1\|8071082\|27\|NZ_CP050974\|CRISPRCasFinder	8071082-8071108	27	CP046442	Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed1, complete sequence	91131-91157	5	0.815
NZ_CP050974_12	12.1\|8071082\|27\|NZ_CP050974\|CRISPRCasFinder	8071082-8071108	27	NZ_CP023976	Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence	163310-163336	5	0.815
NZ_CP050974_12	12.1\|8071082\|27\|NZ_CP050974\|CRISPRCasFinder	8071082-8071108	27	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1122356-1122382	6	0.778
NZ_CP050974_12	12.1\|8071082\|27\|NZ_CP050974\|CRISPRCasFinder	8071082-8071108	27	NZ_CP011453	Altererythrobacter atlanticus strain 26DY36 plasmid unnamed, complete sequence	44855-44881	6	0.778
NZ_CP050974_12	12.1\|8071082\|27\|NZ_CP050974\|CRISPRCasFinder	8071082-8071108	27	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	690720-690746	6	0.778
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	625588-625619	6	0.812
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	38162-38193	7	0.781
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	NZ_CP013739	Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence	137633-137664	8	0.75
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	AP017627	Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome	49616-49647	8	0.75
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	MH617443	Microviridae sp. isolate ctbf267, complete genome	2575-2606	9	0.719
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	654408-654439	9	0.719
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	NZ_LR134461	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence	120005-120036	9	0.719
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	117535-117566	9	0.719
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	MF668280	Mycobacterium phage Phabba, complete genome	54708-54739	9	0.719
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	MK819239	Pseudomonas phage vB_PaeP_YA3, complete genome	85-116	9	0.719
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	NC_023575	Pseudomonas phage vB_PaeP_Tr60_Ab31	144-175	9	0.719
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	KX522650	Arthrobacter Phage Conboy, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	MN204503	Arthrobacter phage Linus, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	KX670787	Arthrobacter phage Chocolat, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	MF668274	Arthrobacter phage JayCookie, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	MK494107	Arthrobacter phage Chipper1996, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	MF185724	Arthrobacter phage Scavito, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	KX670786	Arthrobacter phage Chubster, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	MF185725	Arthrobacter phage Tophat, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	KU160660	Arthrobacter phage PrincessTrina, complete genome	284-315	10	0.688
NZ_CP050974_12	12.2\|8071142\|32\|NZ_CP050974\|CRISPRCasFinder	8071142-8071173	32	KX855961	Arthrobacter phage EdgarPoe, complete genome	284-315	10	0.688
NZ_CP050974_14	14.1\|11953683\|32\|NZ_CP050974\|CRISPRCasFinder	11953683-11953714	32	NC_005307	Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome	33256-33287	10	0.688

1. spacer 12.1|8071082|27|NZ_CP050974|CRISPRCasFinder matches to CP046442 (Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

gccgctctgctgcggtcccggctggga	CRISPR spacer
gccgatttgctgcggtcccggctgaac	Protospacer
**** *.*****************..

2. spacer 12.1|8071082|27|NZ_CP050974|CRISPRCasFinder matches to NZ_CP023976 (Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence) position: , mismatch: 5, identity: 0.815

gccgctctgctgcggtcccggctggga	CRISPR spacer
gccgcgctgctgcgggcccggctcgac	Protospacer
***** ********* ******* *.

3. spacer 12.1|8071082|27|NZ_CP050974|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 6, identity: 0.778

gccgctctgctgcggtcccggctggga	CRISPR spacer
ctcgcgctgctgcggtcccggctgccg	Protospacer
 .*** ******************  .

4. spacer 12.1|8071082|27|NZ_CP050974|CRISPRCasFinder matches to NZ_CP011453 (Altererythrobacter atlanticus strain 26DY36 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.778

gccgctctgctgcggtcccggctggga	CRISPR spacer
gccgttctgctgcggtcccggccccag	Protospacer
****.*****************.  ..

5. spacer 12.1|8071082|27|NZ_CP050974|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 6, identity: 0.778

gccgctctgctgcggtcccggctggga	CRISPR spacer
ctcgcgctgctgcggtcccggctgccg	Protospacer
 .*** ******************  .

6. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 6, identity: 0.812

---cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
agccgccc---gatcccgaaccccgccgccaccgt	Protospacer
   *** *   **.******* *************

7. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 7, identity: 0.781

cgcacgg-agaccccgaacgccgccgccaccgt	CRISPR spacer
-acatggaagatcccgatcgccgccgccaccag	Protospacer
 .**.** ***.***** *************.

8. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to NZ_CP013739 (Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence) position: , mismatch: 8, identity: 0.75

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
gcctcgtcgatcccgaacgcggccgccaccgc	Protospacer
  * **  **.********* **********.

9. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to AP017627 (Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome) position: , mismatch: 8, identity: 0.75

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
acctcgtggacgccgaacgccgacgccaccga	Protospacer
  * ** .*** ********** ********

10. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to MH617443 (Microviridae sp. isolate ctbf267, complete genome) position: , mismatch: 9, identity: 0.719

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
ctcggccggcggggtcgggggttggtactgcc	Protospacer
 .***.********.**********   .* *

11. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 9, identity: 0.719

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
tcgacggacaccccgaactccgccgcctgctg	Protospacer
.  ***** ********* ********  *

12. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 9, identity: 0.719

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
gccgggacgaccacgaccgccgccgccaccgg	Protospacer
  *. *. **** *** **************

13. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 9, identity: 0.719

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
gccctgtggaccccgaccgccgccgcgaccgg	Protospacer
  * .* .******** ********* ****

14. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to MF668280 (Mycobacterium phage Phabba, complete genome) position: , mismatch: 9, identity: 0.719

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
gtcgagccgaccccgatcgccgacgccaccga	Protospacer
  *. *  ******** ***** ********

15. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to MK819239 (Pseudomonas phage vB_PaeP_YA3, complete genome) position: , mismatch: 9, identity: 0.719

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
gagagggagaccccgaacgcttccgccatctc	Protospacer
 . * ***************. ******.* .

16. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to NC_023575 (Pseudomonas phage vB_PaeP_Tr60_Ab31) position: , mismatch: 9, identity: 0.719

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
gagagggagaccccgaacgcttccgccatctc	Protospacer
 . * ***************. ******.* .

17. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to KX522650 (Arthrobacter Phage Conboy, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

18. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to MN204503 (Arthrobacter phage Linus, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

19. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to KX670787 (Arthrobacter phage Chocolat, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

20. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to MF668274 (Arthrobacter phage JayCookie, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

21. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to MK494107 (Arthrobacter phage Chipper1996, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

22. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to MF185724 (Arthrobacter phage Scavito, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

23. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to KX670786 (Arthrobacter phage Chubster, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

24. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to MF185725 (Arthrobacter phage Tophat, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

25. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to KU160660 (Arthrobacter phage PrincessTrina, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

26. spacer 12.2|8071142|32|NZ_CP050974|CRISPRCasFinder matches to KX855961 (Arthrobacter phage EdgarPoe, complete genome) position: , mismatch: 10, identity: 0.688

accggtcggcggggccgggggttgggcgcggc	CRISPR spacer
gggagtcggcggggccgggggtgcggcggctt	Protospacer
.  .******************  ****   .

27. spacer 14.1|11953683|32|NZ_CP050974|CRISPRCasFinder matches to NC_005307 (Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome) position: , mismatch: 10, identity: 0.688

cgcacggagaccccgaacgccgccgccaccgt	CRISPR spacer
accccgaagaccccgaacgccaccgcctggac	Protospacer
  * **.**************.*****   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13196 : 78464

Lactococcus_phage(50.0%)

integrase,transposase

attL 13449:13466|attR 40962:40979

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168486688.1\|13196_14648_-\|transposase	transposase	NA	NA	NA	NA
13449:13466	attL	NA	NA	NA	NA
WP_168486690.1\|14918_15836_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168486692.1\|15895_16240_+	hypothetical protein	NA	NA	NA	NA
WP_168486694.1\|16249_16795_-	hypothetical protein	NA	NA	NA	NA
WP_168486688.1\|16919_18371_-\|transposase	transposase	NA	NA	NA	NA
WP_168486696.1\|18509_18866_+	hypothetical protein	NA	NA	NA	NA
WP_168486699.1\|22050_23319_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_168486702.1\|23340_24330_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_168486704.1\|24326_24470_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_168486706.1\|24652_24841_+	hypothetical protein	NA	NA	NA	NA
WP_168486708.1\|24837_25188_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_168486717.1\|25433_26432_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_168486720.1\|26542_27499_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168486723.1\|27694_27922_+	hypothetical protein	NA	NA	NA	NA
WP_168486725.1\|28021_28558_-	DUF4240 domain-containing protein	NA	NA	NA	NA
WP_168486727.1\|28635_30117_-	hypothetical protein	NA	NA	NA	NA
WP_168486729.1\|30113_30440_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168486731.1\|30439_31558_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_168486733.1\|33620_34322_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_168500689.1\|34622_35246_-	hypothetical protein	NA	NA	NA	NA
WP_168486735.1\|35683_36256_-	hypothetical protein	NA	NA	NA	NA
WP_168500690.1\|36255_38781_-	AAA family ATPase	NA	NA	NA	NA
WP_168486737.1\|39167_39998_+	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_168486739.1\|40318_40807_-	hypothetical protein	NA	NA	NA	NA
WP_168486741.1\|40787_41648_-	hypothetical protein	NA	NA	NA	NA
40962:40979	attR	NA	NA	NA	NA
WP_168486743.1\|42737_43394_+	hypothetical protein	NA	NA	NA	NA
WP_097228186.1\|44010_44214_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	6.1e-16	62.5
WP_168486746.1\|44574_44979_-	DUF2690 domain-containing protein	NA	NA	NA	NA
WP_168500691.1\|45013_45520_-	hypothetical protein	NA	NA	NA	NA
WP_168486748.1\|45617_46871_-	hypothetical protein	A0A141HSE6	Bacillus_phage	1.6e-08	25.2
WP_168500692.1\|47118_50913_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168486750.1\|51245_51791_+	peptidase inhibitor family I36 protein	NA	NA	NA	NA
WP_168486752.1\|51787_52744_+	hypothetical protein	NA	NA	NA	NA
WP_168486754.1\|53583_55224_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_168500693.1\|56644_57472_-	phosphotransferase	NA	NA	NA	NA
WP_168486757.1\|60192_60744_-	YciI family protein	NA	NA	NA	NA
WP_168486759.1\|61750_61906_-	hypothetical protein	NA	NA	NA	NA
WP_168486761.1\|63337_63751_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_168486763.1\|69130_70432_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_168486765.1\|71160_71721_-	hypothetical protein	NA	NA	NA	NA
WP_099918406.1\|71849_72434_-	DinB family protein	NA	NA	NA	NA
WP_168486767.1\|73550_74096_-	DUF1062 domain-containing protein	NA	NA	NA	NA
WP_168500694.1\|74372_75449_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168486769.1\|75460_76015_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168486772.1\|75984_76482_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168500695.1\|77843_78464_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

356096 : 469914

Thermobifida_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168487195.1\|356096_357287_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	2.6e-146	73.3
WP_168487198.1\|357442_358375_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168487200.1\|358371_359229_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168500717.1\|359270_362006_+	alpha-mannosidase	NA	NA	NA	NA
WP_168487202.1\|362055_365040_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	9.4e-137	34.0
WP_168487204.1\|365297_365873_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168487206.1\|365893_366955_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_168487209.1\|367297_368125_+\|transposase	transposase	NA	NA	NA	NA
WP_168487211.1\|368387_369848_-	hypothetical protein	NA	NA	NA	NA
WP_168487213.1\|370511_370919_+	hypothetical protein	NA	NA	NA	NA
WP_168487216.1\|371233_371653_+	hypothetical protein	NA	NA	NA	NA
WP_168487218.1\|371709_375183_+	hypothetical protein	NA	NA	NA	NA
WP_168487220.1\|375197_375449_-	hypothetical protein	NA	NA	NA	NA
WP_168487223.1\|375554_376310_-\|transposase	transposase	NA	NA	NA	NA
WP_168487227.1\|376873_377668_-	sel1 repeat family protein	NA	NA	NA	NA
WP_168487229.1\|377744_384104_-	hypothetical protein	NA	NA	NA	NA
WP_168486574.1\|384709_390862_+	hypothetical protein	NA	NA	NA	NA
WP_168487231.1\|391451_391727_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168500718.1\|392206_392353_-	hypothetical protein	NA	NA	NA	NA
WP_168487235.1\|392528_392984_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_168487238.1\|392980_394597_+	cation acetate symporter	NA	NA	NA	NA
WP_168500719.1\|394991_395987_+	helix-turn-helix domain-containing protein	V9LZQ4	Vibrio_phage	2.0e-06	27.6
WP_168500720.1\|395992_397837_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_168487239.1\|397808_398462_+	SRPBCC family protein	NA	NA	NA	NA
WP_168487241.1\|398458_399478_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
WP_168487243.1\|399481_400600_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	8.4e-14	26.6
WP_168486769.1\|400725_401280_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168487245.1\|401249_401852_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168487248.1\|403386_403974_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_168487250.1\|403989_405111_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168487252.1\|405236_406240_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168487254.1\|406360_406870_+	hypothetical protein	NA	NA	NA	NA
WP_168486769.1\|408300_408855_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168487256.1\|416010_417024_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_168487258.1\|417077_419468_-	phosphoketolase	NA	NA	NA	NA
WP_168487260.1\|419695_420568_-	universal stress protein	NA	NA	NA	NA
WP_168487262.1\|420573_421596_-	alcohol dehydrogenase catalytic domain-containing protein	A0A2K9L339	Tupanvirus	2.7e-27	27.2
WP_168487264.1\|422676_423294_-	DoxX family membrane protein	NA	NA	NA	NA
WP_168500721.1\|423429_424248_-	universal stress protein	NA	NA	NA	NA
WP_168487266.1\|424415_424808_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_168487268.1\|425939_426419_+	anti-sigma factor antagonist	NA	NA	NA	NA
WP_168487270.1\|426444_429315_-	HAD-IC family P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	1.0e-63	30.6
WP_168487273.1\|429908_430760_+	slipin family protein	NA	NA	NA	NA
WP_168487275.1\|431199_432810_-	metallophosphoesterase family protein	NA	NA	NA	NA
WP_168487277.1\|433161_433854_-	M24 family metallopeptidase	NA	NA	NA	NA
WP_168500722.1\|433900_434089_-	hypothetical protein	NA	NA	NA	NA
WP_168487279.1\|434099_435383_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_168500723.1\|435582_436422_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_168500724.1\|436375_436876_-	C26 family cysteine hydrolase domain-containing family	NA	NA	NA	NA
WP_168487281.1\|436940_437873_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_168487283.1\|438132_439413_-\|transposase	transposase	I4AZI9	Saccharomonospora_phage	4.6e-40	30.5
WP_168487285.1\|440862_443049_-	recombinase family protein	A0A141DZX2	Streptococcus_phage	1.6e-05	25.6
WP_168487289.1\|443655_444222_-	flavin reductase family protein	NA	NA	NA	NA
WP_168500725.1\|444381_445236_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168487291.1\|445495_446371_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168487293.1\|446545_447385_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_168487296.1\|447561_448341_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_168487298.1\|448415_449255_-	UTRA domain-containing protein	NA	NA	NA	NA
WP_168500726.1\|449547_450786_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_168487300.1\|450815_451805_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168487302.1\|451801_452641_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168487304.1\|452682_454215_+	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_168487306.1\|454298_455489_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	3.4e-146	73.8
WP_099925933.1\|457249_457585_+	hypothetical protein	NA	NA	NA	NA
WP_168487308.1\|457639_460543_-	alpha-L-rhamnosidase	NA	NA	NA	NA
WP_168500727.1\|460972_462742_+	glycosyl hydrolase	NA	NA	NA	NA
WP_168487310.1\|463737_464310_+	dihydrofolate reductase family protein	NA	NA	NA	NA
WP_168487312.1\|464805_465360_-	dihydrofolate reductase family protein	NA	NA	NA	NA
WP_168500728.1\|465456_466176_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168487314.1\|466833_468048_-\|transposase	transposase	A0A068A1P5	Thermus_phage	1.1e-54	36.6
WP_168487316.1\|468100_468529_+\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	1.9e-38	58.3
WP_168487318.1\|468999_469914_+\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

734499 : 761394

Saccharomonospora_phage(25.0%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168487792.1\|734499_735579_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168500751.1\|735601_735934_+	hypothetical protein	NA	NA	NA	NA
WP_168487793.1\|736056_736950_-	hypothetical protein	NA	NA	NA	NA
WP_168487794.1\|737059_737374_+	hypothetical protein	NA	NA	NA	NA
WP_168487795.1\|737474_739136_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_168487796.1\|739307_739736_-\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	5.3e-41	62.9
WP_168487797.1\|739762_740920_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	2.0e-66	44.2
WP_168487798.1\|741038_741422_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_101406866.1\|741481_741817_-	hypothetical protein	NA	NA	NA	NA
WP_168487799.1\|742097_747647_+	hypothetical protein	NA	NA	NA	NA
WP_168487800.1\|750639_751335_+	response regulator transcription factor	NA	NA	NA	NA
WP_168487802.1\|751468_752188_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_168487804.1\|752184_754281_+	AAA family ATPase	A0A1B2RW50	Lymphocystis_disease_virus	2.6e-08	31.4
WP_168487807.1\|754348_755785_-	hydrolase	NA	NA	NA	NA
WP_168487809.1\|755877_757299_-	hydrogenase expression protein	NA	NA	NA	NA
WP_168500752.1\|757426_759133_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_143600028.1\|759304_760885_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	1.3e-65	34.8
WP_054230236.1\|760950_761394_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_4

765666 : 830821

Bacillus_phage(33.33%)

integrase,plate,tail,transposase

attL 797472:797490|attR 833032:833050

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054235291.1\|765666_766092_+\|tail	phage tail protein	NA	NA	NA	NA
WP_067374696.1\|766107_766836_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_168487813.1\|766835_768752_+	VgrG-related protein	NA	NA	NA	NA
WP_075029396.1\|768792_769233_+	GPW/gp25 family protein	A0A1D8KR06	Synechococcus_phage	6.9e-12	31.6
WP_168487816.1\|769232_771191_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_168487818.1\|771187_771745_+\|tail	phage tail protein	NA	NA	NA	NA
WP_067374690.1\|774972_775224_-	hypothetical protein	NA	NA	NA	NA
WP_168487821.1\|775333_776215_-	hypothetical protein	NA	NA	NA	NA
WP_168486576.1\|778484_778643_-	hypothetical protein	NA	NA	NA	NA
WP_168487823.1\|778832_779390_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_168487825.1\|782543_782834_+	hypothetical protein	NA	NA	NA	NA
WP_168486579.1\|783290_783431_-	hypothetical protein	NA	NA	NA	NA
WP_168487827.1\|783615_784113_-	hypothetical protein	NA	NA	NA	NA
WP_168487829.1\|785424_786618_+	hypothetical protein	NA	NA	NA	NA
WP_168487831.1\|786647_787322_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_168487833.1\|787507_788284_-	DNA/RNA nuclease SfsA	A0A127AYZ0	Bacillus_phage	6.4e-45	42.7
WP_168487835.1\|788408_788783_-	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_168487837.1\|788961_789990_+	WYL domain-containing protein	A0A1B0RXM1	Streptococcus_phage	1.8e-07	26.4
WP_168500753.1\|790567_790798_+	transcriptional regulator	NA	NA	NA	NA
WP_168487839.1\|790869_793002_-	hypothetical protein	NA	NA	NA	NA
WP_168487842.1\|793715_796844_+	discoidin domain-containing protein	NA	NA	NA	NA
WP_168487844.1\|797431_800191_+	galactosylceramidase	NA	NA	NA	NA
797472:797490	attL	NA	NA	NA	NA
WP_168487846.1\|800412_803052_+	hypothetical protein	NA	NA	NA	NA
WP_168487848.1\|803385_803982_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_168487850.1\|804594_805062_+\|transposase	transposase	NA	NA	NA	NA
WP_168487852.1\|805189_806215_-	thaumatin family protein	A0A2K9L018	Tupanvirus	8.0e-19	29.9
WP_168500754.1\|806535_807120_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_168487854.1\|808436_809300_-	isocitrate lyase/PEP mutase family protein	NA	NA	NA	NA
WP_168487856.1\|809956_811459_-	metallophosphoesterase	NA	NA	NA	NA
WP_168487858.1\|811936_812569_+	glyoxalase	NA	NA	NA	NA
WP_168500755.1\|814100_815237_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJA0	Virus_Rctr71	2.4e-72	42.4
WP_168487860.1\|815868_816294_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_168487862.1\|819066_819828_-	metallophosphoesterase family protein	NA	NA	NA	NA
WP_168487864.1\|820796_821360_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	2.6e-27	41.1
WP_168487867.1\|821349_822552_-	acetylhydrolase	NA	NA	NA	NA
WP_168487869.1\|822655_823003_-	transcriptional regulator	NA	NA	NA	NA
WP_168487872.1\|822999_823746_-	hypothetical protein	NA	NA	NA	NA
WP_168487879.1\|824140_825058_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_168487882.1\|825092_825518_-	hypothetical protein	NA	NA	NA	NA
WP_168487884.1\|825514_827686_-\|integrase	integrase	NA	NA	NA	NA
WP_168487886.1\|829393_830821_-\|integrase	site-specific integrase	NA	NA	NA	NA
833032:833050	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1118343 : 1153182

Pseudomonas_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168488272.1\|1118343_1118850_+\|protease	hydrogenase maturation protease	NA	NA	NA	NA
WP_168488274.1\|1118991_1119855_+	universal stress protein	NA	NA	NA	NA
WP_168500785.1\|1122274_1122805_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_168488276.1\|1123021_1123465_+	hypothetical protein	NA	NA	NA	NA
WP_168488278.1\|1123541_1124777_-	MFS transporter	NA	NA	NA	NA
WP_168500786.1\|1125083_1125458_-	VOC family protein	NA	NA	NA	NA
WP_168500787.1\|1128125_1129910_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.2e-93	37.5
WP_168488280.1\|1130507_1131335_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	M4I0N8	Staphylococcus_phage	7.3e-23	31.5
WP_168488282.1\|1131622_1132090_+	DUF4232 domain-containing protein	NA	NA	NA	NA
WP_168500788.1\|1133205_1134690_+	VCBS repeat-containing protein	NA	NA	NA	NA
WP_168488285.1\|1135018_1135879_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_168488287.1\|1136155_1136326_-	hypothetical protein	NA	NA	NA	NA
WP_168488289.1\|1136602_1137088_-	hypothetical protein	NA	NA	NA	NA
WP_168488291.1\|1137325_1138303_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_168488294.1\|1138242_1139043_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_168488296.1\|1140299_1141220_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_168488298.1\|1143390_1144152_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_168488300.1\|1144312_1145677_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_168488302.1\|1145762_1146725_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168488304.1\|1146724_1147591_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168488306.1\|1147587_1148577_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_168488309.1\|1148573_1149545_+	carbohydrate kinase	NA	NA	NA	NA
WP_168500789.1\|1149622_1150945_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_168488311.1\|1151503_1152703_-\|transposase	transposase	A0A220NS37	Mycobacterium_phage	1.1e-30	31.3
WP_168488313.1\|1152753_1153182_+\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	2.3e-44	65.9

DBSCAN-SWA_6

1202771 : 1330630

Enterobacteria_phage(25.0%)

integrase,transposase

attL 1238911:1238970|attR 1306323:1306339

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168488420.1\|1202771_1202984_-\|transposase	transposase	NA	NA	NA	NA
WP_168488423.1\|1203402_1203936_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_168488425.1\|1203932_1204388_+	hypothetical protein	NA	NA	NA	NA
WP_168488428.1\|1204392_1205274_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168488437.1\|1205883_1206645_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.7e-08	27.9
WP_168488439.1\|1206682_1207534_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_168488441.1\|1207652_1208624_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_168488446.1\|1208855_1209830_+	hypothetical protein	NA	NA	NA	NA
WP_168500794.1\|1211297_1211477_-	hypothetical protein	NA	NA	NA	NA
WP_168500795.1\|1212092_1213967_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_168488448.1\|1214144_1214381_+	hypothetical protein	NA	NA	NA	NA
WP_168500796.1\|1214833_1215397_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_168488451.1\|1216539_1217799_+	hypothetical protein	NA	NA	NA	NA
WP_168488453.1\|1219062_1220421_-	hypothetical protein	NA	NA	NA	NA
WP_168488455.1\|1221258_1221603_+	hypothetical protein	NA	NA	NA	NA
WP_168488457.1\|1221623_1222880_-	amidohydrolase	NA	NA	NA	NA
WP_168488459.1\|1222876_1223608_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_168488461.1\|1223901_1224180_+	hypothetical protein	NA	NA	NA	NA
WP_168488463.1\|1225202_1225559_-	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_168488465.1\|1225757_1226699_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488467.1\|1227163_1227883_+	DUF998 domain-containing protein	NA	NA	NA	NA
WP_168488469.1\|1227970_1230130_+	MMPL family transporter	NA	NA	NA	NA
WP_168488471.1\|1230196_1230517_+	hypothetical protein	NA	NA	NA	NA
WP_168488473.1\|1230650_1231394_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_168500797.1\|1231484_1232897_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_168488475.1\|1233116_1234088_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_168488477.1\|1234551_1234839_+	hypothetical protein	NA	NA	NA	NA
WP_168488479.1\|1235092_1235305_-	hypothetical protein	NA	NA	NA	NA
WP_168488482.1\|1236786_1237269_+	hypothetical protein	NA	NA	NA	NA
WP_168500798.1\|1237308_1238793_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
1238911:1238970	attL	NA	NA	NA	NA
WP_168488484.1\|1238924_1239536_-\|transposase	IS630 family transposase	NA	NA	NA	NA
1238911:1238970	attL	NA	NA	NA	NA
WP_168487928.1\|1239439_1239976_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488487.1\|1241266_1242364_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_168488489.1\|1242624_1243458_+	hypothetical protein	NA	NA	NA	NA
WP_121413210.1\|1243586_1244405_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.3e-52	42.9
WP_143613979.1\|1244404_1245685_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	5.8e-27	33.7
WP_168500799.1\|1246467_1248594_+	HAD hydrolase family protein	NA	NA	NA	NA
WP_168488491.1\|1249162_1249753_+	isochorismatase family protein	NA	NA	NA	NA
WP_168488493.1\|1249826_1249985_-	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_168500800.1\|1250839_1251931_+\|transposase	transposase	NA	NA	NA	NA
WP_168488495.1\|1252273_1252678_-	PIN domain-containing protein	NA	NA	NA	NA
WP_155057999.1\|1252687_1252885_-	hypothetical protein	NA	NA	NA	NA
WP_168500801.1\|1253681_1254113_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_168488498.1\|1254431_1256177_+	Replication initiation protein	NA	NA	NA	NA
WP_168488500.1\|1256173_1256362_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488502.1\|1256358_1257666_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0T6A8	Bacillus_phage	4.0e-39	33.1
WP_168488484.1\|1257692_1258304_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168487928.1\|1258207_1258744_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168500802.1\|1267080_1271196_+	hypothetical protein	NA	NA	NA	NA
1257679:1258799	attR	NA	NA	NA	NA
WP_168488504.1\|1271141_1271732_-	hypothetical protein	NA	NA	NA	NA
1257679:1258799	attR	NA	NA	NA	NA
WP_168488506.1\|1272066_1272873_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_168500803.1\|1272900_1273794_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488508.1\|1276426_1276849_+	hypothetical protein	NA	NA	NA	NA
WP_168488510.1\|1278699_1280013_-	MFS transporter	NA	NA	NA	NA
WP_168488512.1\|1280444_1281347_-	ectoine hydroxylase	NA	NA	NA	NA
WP_168488514.1\|1281676_1282252_+	hypothetical protein	NA	NA	NA	NA
WP_168488516.1\|1283551_1284577_-	aldo/keto reductase	NA	NA	NA	NA
WP_168488518.1\|1284585_1285050_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_168488521.1\|1285146_1285731_-	hypothetical protein	NA	NA	NA	NA
WP_168488523.1\|1289902_1290637_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168488525.1\|1290716_1291688_+	WYL domain-containing protein	NA	NA	NA	NA
WP_168500804.1\|1291721_1292270_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.2e-26	45.3
WP_168500805.1\|1292437_1293205_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_168488527.1\|1293397_1294549_-\|integrase	integrase	NA	NA	NA	NA
WP_168488529.1\|1294689_1295013_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488531.1\|1296688_1296934_-	hypothetical protein	NA	NA	NA	NA
WP_168488533.1\|1296917_1297442_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488535.1\|1297616_1297895_-	hypothetical protein	NA	NA	NA	NA
WP_168488537.1\|1298548_1299523_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488539.1\|1303197_1304415_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_168488541.1\|1304639_1304777_-	hypothetical protein	NA	NA	NA	NA
WP_168488543.1\|1304943_1305834_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_168488545.1\|1305908_1307441_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	1.2e-39	34.8
WP_168500806.1\|1308398_1308929_-	LamG domain-containing protein	NA	NA	NA	NA
WP_143614204.1\|1311888_1313112_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_168488547.1\|1313586_1313895_+	hypothetical protein	NA	NA	NA	NA
WP_095850750.1\|1315077_1315266_-	hypothetical protein	NA	NA	NA	NA
WP_168488549.1\|1315344_1315848_-	hypothetical protein	NA	NA	NA	NA
WP_168488554.1\|1315848_1317600_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_168488557.1\|1318295_1318598_+	hypothetical protein	NA	NA	NA	NA
WP_168488560.1\|1318620_1318797_-	hypothetical protein	NA	NA	NA	NA
WP_168488563.1\|1319922_1320132_+	hypothetical protein	NA	NA	NA	NA
WP_168488565.1\|1320397_1321300_+	hypothetical protein	NA	NA	NA	NA
WP_168488567.1\|1321376_1322380_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-09	32.4
WP_168488570.1\|1322581_1323286_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168488573.1\|1323405_1323828_-	SsgA family sporulation/cell division regulator	NA	NA	NA	NA
WP_168488575.1\|1324107_1324497_-	hypothetical protein	NA	NA	NA	NA
WP_168488577.1\|1324669_1324855_-	hypothetical protein	NA	NA	NA	NA
WP_168488579.1\|1324883_1325354_-	hypothetical protein	NA	NA	NA	NA
WP_168500807.1\|1325327_1326470_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_168488581.1\|1327935_1328229_+	hypothetical protein	NA	NA	NA	NA
WP_168488583.1\|1328314_1329523_-	acyltransferase family protein	A0A2H4JA46	uncultured_Caudovirales_phage	1.6e-05	24.7
WP_168488585.1\|1329578_1329749_+	hypothetical protein	NA	NA	NA	NA
WP_168488587.1\|1329973_1330291_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_168488589.1\|1330345_1330630_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1349596 : 1406892

Mycobacterium_phage(25.0%)

integrase,transposase

attL 1344124:1344139|attR 1407895:1407910

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1344124:1344139	attL	NA	NA	NA	NA
WP_168488625.1\|1349596_1350730_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168488627.1\|1350882_1352148_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_168488629.1\|1352355_1353408_-	AsnC family transcriptional regulator	NA	NA	NA	NA
WP_168488631.1\|1353711_1354626_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168488633.1\|1359172_1360411_+	hypothetical protein	NA	NA	NA	NA
WP_168488635.1\|1362566_1362776_+	hypothetical protein	NA	NA	NA	NA
WP_168488637.1\|1363028_1363856_+	alpha/beta fold hydrolase	A0A1D8EW21	Mycobacterium_phage	3.1e-13	28.3
WP_168488639.1\|1364676_1365543_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168488641.1\|1365817_1367590_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_168488644.1\|1370554_1370902_-	hypothetical protein	NA	NA	NA	NA
WP_168488646.1\|1370917_1372003_-	alkene reductase	NA	NA	NA	NA
WP_168488649.1\|1372066_1372669_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_168488651.1\|1372689_1373697_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_168488653.1\|1373804_1374413_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168488655.1\|1374706_1375129_-	hypothetical protein	NA	NA	NA	NA
WP_168488658.1\|1376003_1376714_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.3e-23	37.8
WP_168488660.1\|1377309_1378641_-	cytochrome P450	I6WI04	Cotesia_sesamiae_Mombasa_bracovirus	6.1e-19	31.6
WP_168488662.1\|1378911_1379388_-	hypothetical protein	NA	NA	NA	NA
WP_168500808.1\|1379531_1380695_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_168488664.1\|1380657_1380951_-	hypothetical protein	NA	NA	NA	NA
WP_143614245.1\|1381058_1381289_+	hypothetical protein	NA	NA	NA	NA
WP_168488667.1\|1381285_1381510_+	hypothetical protein	NA	NA	NA	NA
WP_168488669.1\|1383829_1385146_-	MFS transporter	NA	NA	NA	NA
WP_168488671.1\|1385234_1386215_+	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_168488673.1\|1386224_1386593_-\|transposase	transposase	NA	NA	NA	NA
WP_168488675.1\|1388179_1389487_-	MFS transporter	NA	NA	NA	NA
WP_168488677.1\|1389483_1390092_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488679.1\|1390189_1390984_-	ATP-binding protein	NA	NA	NA	NA
WP_168488681.1\|1391530_1391872_-	hypothetical protein	NA	NA	NA	NA
WP_168488683.1\|1391937_1392090_+	hypothetical protein	NA	NA	NA	NA
WP_168488685.1\|1392190_1393189_-	DUF3710 domain-containing protein	NA	NA	NA	NA
WP_168488687.1\|1394285_1395464_+	sensor histidine kinase	NA	NA	NA	NA
WP_168488689.1\|1395460_1396129_+	response regulator	NA	NA	NA	NA
WP_168488691.1\|1396654_1397899_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.8e-111	55.1
WP_168488693.1\|1398143_1398827_+	hypothetical protein	NA	NA	NA	NA
WP_168488695.1\|1399188_1399965_-	hypothetical protein	NA	NA	NA	NA
WP_168488697.1\|1400092_1400263_+	hypothetical protein	NA	NA	NA	NA
WP_168488699.1\|1400392_1401775_+	ATP-binding protein	NA	NA	NA	NA
WP_168488702.1\|1401823_1402132_+	hypothetical protein	NA	NA	NA	NA
WP_168500809.1\|1402138_1403437_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_168488704.1\|1403677_1404061_+\|transposase	transposase	NA	NA	NA	NA
WP_168488706.1\|1404078_1404816_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_168500810.1\|1404966_1406535_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_168500811.1\|1406595_1406892_+\|transposase	transposase	NA	NA	NA	NA
1407895:1407910	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1430549 : 1486362

Agrobacterium_phage(40.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168488749.1\|1430549_1431383_+\|transposase	transposase	NA	NA	NA	NA
WP_168488752.1\|1431418_1431967_-	exonuclease SbcC	NA	NA	NA	NA
WP_168488754.1\|1432395_1433064_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_168488756.1\|1433954_1434957_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168486769.1\|1434992_1435547_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168487134.1\|1435516_1436119_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168488759.1\|1437945_1438968_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_168488761.1\|1439071_1439659_-	hypothetical protein	NA	NA	NA	NA
WP_168488763.1\|1442409_1443315_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_168488765.1\|1443585_1444005_+	hypothetical protein	NA	NA	NA	NA
WP_168488767.1\|1444244_1444406_-\|transposase	transposase	NA	NA	NA	NA
WP_168488769.1\|1444801_1445644_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168488771.1\|1445815_1446295_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_168488773.1\|1446827_1447736_+	NmrA family NAD(P)-binding protein	A0A1V0SLC2	Klosneuvirus	2.4e-11	26.1
WP_168488781.1\|1447822_1448218_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_168488783.1\|1448214_1448607_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_168488785.1\|1448760_1449009_+	hypothetical protein	NA	NA	NA	NA
WP_168500813.1\|1449163_1449937_+	hypothetical protein	NA	NA	NA	NA
WP_168488786.1\|1449887_1450091_-	hypothetical protein	NA	NA	NA	NA
WP_168488788.1\|1450590_1451781_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_168488791.1\|1452341_1452941_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_168488793.1\|1453170_1453662_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_168488795.1\|1454716_1455991_-	hypothetical protein	NA	NA	NA	NA
WP_168488797.1\|1456927_1457386_+	hypothetical protein	NA	NA	NA	NA
WP_168488799.1\|1457409_1457838_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_168488801.1\|1458139_1458736_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_168488803.1\|1458777_1459596_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_168488805.1\|1459733_1460639_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_168488807.1\|1461229_1461628_+	hypothetical protein	NA	NA	NA	NA
WP_168488809.1\|1461713_1462367_+	DUF305 domain-containing protein	NA	NA	NA	NA
WP_099920443.1\|1462644_1463307_+	type 1 glutamine amidotransferase-like domain-containing protein	NA	NA	NA	NA
WP_168488811.1\|1464161_1465442_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.3e-30	35.4
WP_168488813.1\|1467294_1468350_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168500814.1\|1468527_1469325_-	VOC family protein	NA	NA	NA	NA
WP_168500815.1\|1469470_1470487_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_168488815.1\|1470489_1471779_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_168488817.1\|1471875_1472808_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_168488819.1\|1472814_1473192_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_168488821.1\|1473296_1474826_-	DHA2 family efflux MFS transporter permease subunit	A0A0M3UL24	Mycobacterium_phage	3.2e-64	38.1
WP_168488823.1\|1475194_1475590_-	nitroreductase family deazaflavin-dependent oxidoreductase	NA	NA	NA	NA
WP_168488825.1\|1475645_1476164_-	hypothetical protein	NA	NA	NA	NA
WP_168488827.1\|1476453_1479870_+	lectin	NA	NA	NA	NA
WP_168488829.1\|1480064_1481150_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_168488832.1\|1481149_1481680_-	SRPBCC family protein	NA	NA	NA	NA
WP_168488835.1\|1482226_1482724_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_168488838.1\|1483031_1483514_-	VOC family protein	NA	NA	NA	NA
WP_168488840.1\|1483672_1484911_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168488842.1\|1485104_1485758_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.0e-35	45.5
WP_168488844.1\|1485759_1486362_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.9e-39	43.0

DBSCAN-SWA_9

2458454 : 2481655

Bacillus_phage(100.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168500901.1\|2458454_2459543_+\|transposase	transposase	NA	NA	NA	NA
WP_168500831.1\|2459906_2461613_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_168489873.1\|2461849_2462167_-	hypothetical protein	NA	NA	NA	NA
WP_168500902.1\|2462195_2462999_-	hypothetical protein	NA	NA	NA	NA
WP_168489874.1\|2466464_2468033_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_168500903.1\|2468085_2468607_-	hypothetical protein	NA	NA	NA	NA
WP_168489875.1\|2468954_2470178_-	hypothetical protein	NA	NA	NA	NA
WP_168500831.1\|2472140_2473847_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_168489876.1\|2474411_2474972_+	hypothetical protein	NA	NA	NA	NA
WP_168489877.1\|2475032_2476739_+	hypothetical protein	NA	NA	NA	NA
WP_168489878.1\|2476735_2478049_+\|protease	type VII secretion-associated serine protease mycosin	A0A217EQY2	Bacillus_phage	4.3e-25	37.1
WP_168489879.1\|2478050_2478488_+	hypothetical protein	NA	NA	NA	NA
WP_168489880.1\|2478491_2479739_+	hypothetical protein	NA	NA	NA	NA
WP_168489881.1\|2479735_2479939_+	hypothetical protein	NA	NA	NA	NA
WP_168489882.1\|2480365_2480875_+	hypothetical protein	NA	NA	NA	NA
WP_168489883.1\|2480887_2481655_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

4258760 : 4334632

Streptococcus_phage(25.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168491450.1\|4258760_4261649_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	8.3e-215	44.9
WP_168501021.1\|4262122_4263385_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_168491452.1\|4263381_4265001_+	oxidoreductase	NA	NA	NA	NA
WP_168501022.1\|4265382_4266480_+	DUF2029 domain-containing protein	NA	NA	NA	NA
WP_010986886.1\|4266448_4266682_-	hypothetical protein	NA	NA	NA	NA
WP_101405208.1\|4266685_4266859_-	hypothetical protein	NA	NA	NA	NA
WP_168501023.1\|4266928_4268305_-	MFS transporter	NA	NA	NA	NA
WP_168501024.1\|4269694_4270315_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_168491454.1\|4270428_4270872_-	ribosome silencing factor	NA	NA	NA	NA
WP_168491456.1\|4271044_4272868_-	LytR family transcriptional regulator	NA	NA	NA	NA
WP_168491458.1\|4272893_4273628_-	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_095854717.1\|4273707_4273869_-	hypothetical protein	NA	NA	NA	NA
WP_168491460.1\|4274024_4274183_-	hypothetical protein	NA	NA	NA	NA
WP_168491462.1\|4274286_4275441_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_168491464.1\|4275547_4276615_-	hypothetical protein	NA	NA	NA	NA
WP_168491467.1\|4276759_4277410_-	hypothetical protein	NA	NA	NA	NA
WP_095854712.1\|4277472_4278759_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.8e-106	52.5
WP_168501025.1\|4278820_4279300_-	hypothetical protein	NA	NA	NA	NA
WP_168501026.1\|4279503_4280610_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.0e-55	38.3
WP_168491469.1\|4280890_4282291_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_168491471.1\|4282414_4283620_-	glycosyltransferase	NA	NA	NA	NA
WP_168491473.1\|4283833_4285936_-	hypothetical protein	NA	NA	NA	NA
WP_101405195.1\|4286110_4287610_-	bifunctional cytidylyltransferase/SDR family oxidoreductase	NA	NA	NA	NA
WP_168501027.1\|4287803_4288955_-	hypothetical protein	NA	NA	NA	NA
WP_168491475.1\|4289234_4290776_-	alkaline phosphatase	NA	NA	NA	NA
WP_168491476.1\|4291151_4292588_-	GTPase ObgE	NA	NA	NA	NA
WP_028802588.1\|4292720_4292975_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_006374708.1\|4292989_4293310_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_168491479.1\|4297884_4298661_-	DUF2344 domain-containing protein	NA	NA	NA	NA
WP_168491481.1\|4298709_4299906_-	hypothetical protein	NA	NA	NA	NA
WP_168491483.1\|4300275_4300860_+	TerD family protein	A0A2P1N0C0	Streptomyces_phage	2.1e-40	46.0
WP_168491484.1\|4300986_4302090_-	hypothetical protein	NA	NA	NA	NA
WP_168501028.1\|4302222_4304769_-	amino acid permease	NA	NA	NA	NA
WP_168491486.1\|4305570_4306935_-	glutamate decarboxylase	NA	NA	NA	NA
WP_168486593.1\|4307429_4307618_-	hypothetical protein	NA	NA	NA	NA
WP_168491488.1\|4308009_4308810_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168491490.1\|4308747_4309509_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_168491492.1\|4309552_4310242_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
WP_168491494.1\|4311483_4313016_+	DoxX family membrane protein	NA	NA	NA	NA
WP_168491496.1\|4313629_4315600_-	TIGR03960 family B12-binding radical SAM protein	NA	NA	NA	NA
WP_168491498.1\|4315681_4317316_-	CHAD domain-containing protein	NA	NA	NA	NA
WP_168491500.1\|4317759_4318956_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_168491502.1\|4318952_4321214_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_101405178.1\|4321357_4322023_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_101405177.1\|4322036_4322975_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_081217257.1\|4323129_4324149_-	rod shape-determining protein	NA	NA	NA	NA
WP_054231901.1\|4324566_4324980_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.9e-27	48.5
WP_168491505.1\|4325147_4325501_-	DUF4233 domain-containing protein	NA	NA	NA	NA
WP_168491507.1\|4325506_4327048_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_168491509.1\|4327427_4330052_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.6e-143	39.8
WP_168491511.1\|4330048_4330618_-\|transposase	transposase	NA	NA	NA	NA
WP_168491513.1\|4330614_4331007_-\|transposase	transposase	NA	NA	NA	NA
WP_168491515.1\|4331009_4331336_+\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_168491518.1\|4331422_4332415_+	hypothetical protein	NA	NA	NA	NA
WP_054231969.1\|4332504_4333791_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	9.0e-145	61.3
WP_054231896.1\|4333951_4334632_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.9e-40	46.9

DBSCAN-SWA_11

9520847 : 9556985

Mycobacterium_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168497936.1\|9520847_9522137_+\|transposase	transposase	I4AZI9	Saccharomonospora_phage	1.3e-53	36.0
WP_168501447.1\|9522702_9524397_-	chitinase	M1HYL5	Paramecium_bursaria_Chlorella_virus	3.1e-20	29.7
WP_168497938.1\|9524611_9525790_-	ATP-grasp domain protein	NA	NA	NA	NA
WP_168497940.1\|9526078_9526987_+	metallophosphoesterase	NA	NA	NA	NA
WP_168497943.1\|9526934_9527630_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_168497945.1\|9527626_9527869_-	hypothetical protein	NA	NA	NA	NA
WP_168501448.1\|9528150_9529152_+	alpha/beta fold hydrolase	A0A2R4AQZ9	Mycobacterium_phage	1.4e-20	31.9
WP_168497947.1\|9529198_9530647_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_101403922.1\|9531847_9532378_-	toxin-antitoxin system, toxin component	NA	NA	NA	NA
WP_168497949.1\|9532410_9533067_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168497951.1\|9533307_9533955_+	hypothetical protein	NA	NA	NA	NA
WP_168497953.1\|9533986_9534766_-	hypothetical protein	NA	NA	NA	NA
WP_168497956.1\|9534722_9535550_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_168497958.1\|9535663_9536701_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.5e-28	35.8
WP_168497960.1\|9536742_9537951_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_168497962.1\|9537961_9538852_+	ABC transporter permease subunit	Q6GZ02	Mycoplasma_phage	1.2e-10	30.0
WP_168497964.1\|9538862_9539678_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168497966.1\|9540076_9541247_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.2e-34	34.3
WP_168497968.1\|9541647_9542574_-	pirin family protein	NA	NA	NA	NA
WP_168501449.1\|9542726_9543641_+	glyoxalase	NA	NA	NA	NA
WP_168497970.1\|9543622_9543853_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	4.8e-09	72.5
WP_168497972.1\|9543923_9544769_+\|transposase	transposase	NA	NA	NA	NA
WP_168497974.1\|9544785_9546426_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_168497976.1\|9547770_9547941_+	hypothetical protein	NA	NA	NA	NA
WP_168497978.1\|9549073_9549583_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_168497980.1\|9549719_9549866_+	hypothetical protein	NA	NA	NA	NA
WP_168501450.1\|9550452_9550998_+	isochorismatase family protein	NA	NA	NA	NA
WP_168497982.1\|9551400_9551820_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_168497984.1\|9552020_9552287_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_168501451.1\|9552385_9553237_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_168497986.1\|9553678_9555271_+	DHA2 family efflux MFS transporter permease subunit	A0A0M3UL24	Mycobacterium_phage	3.7e-39	32.5
WP_168487209.1\|9556157_9556985_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_12

10554444 : 10618836

Lactococcus_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168499312.1\|10554444_10555719_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_168499314.1\|10556795_10558310_-	hypothetical protein	NA	NA	NA	NA
WP_168499316.1\|10558537_10559659_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168499318.1\|10559704_10560235_-	chloramphenicol phosphotransferase CPT	NA	NA	NA	NA
WP_168499320.1\|10560607_10561261_+	DUF1707 domain-containing protein	NA	NA	NA	NA
WP_168499323.1\|10561946_10562336_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_168501538.1\|10562745_10563051_+	hypothetical protein	NA	NA	NA	NA
WP_168499325.1\|10563071_10563425_-	YdhR family protein	NA	NA	NA	NA
WP_168499326.1\|10564383_10565310_-\|transposase	transposase	NA	NA	NA	NA
WP_168499327.1\|10566155_10566755_-	cation transporter	NA	NA	NA	NA
WP_168499328.1\|10567688_10568822_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_168499329.1\|10569822_10570635_-	acyl carrier protein	NA	NA	NA	NA
WP_144314448.1\|10572790_10574179_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_168499330.1\|10575321_10576617_-	inositol phosphorylceramide synthase	NA	NA	NA	NA
WP_168499332.1\|10578230_10578767_+	hypothetical protein	NA	NA	NA	NA
WP_168499334.1\|10579401_10579743_+	hypothetical protein	NA	NA	NA	NA
WP_168499336.1\|10580515_10581040_-	VOC family protein	NA	NA	NA	NA
WP_168501539.1\|10581324_10581678_+	VOC family protein	NA	NA	NA	NA
WP_168499338.1\|10581796_10582642_-	inositol monophosphatase	NA	NA	NA	NA
WP_168501540.1\|10583112_10583604_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_168501541.1\|10583821_10584463_+	hypothetical protein	NA	NA	NA	NA
WP_060899524.1\|10584832_10585036_+	cold-shock protein	Q9AZD3	Lactococcus_phage	3.6e-16	62.7
WP_168499340.1\|10585228_10585708_+	hypothetical protein	NA	NA	NA	NA
WP_168499342.1\|10585803_10587966_-	hypothetical protein	NA	NA	NA	NA
WP_168499344.1\|10588189_10588642_-	hypothetical protein	NA	NA	NA	NA
WP_168499346.1\|10588859_10589363_+	hypothetical protein	NA	NA	NA	NA
WP_168499348.1\|10589332_10590751_+	hypothetical protein	NA	NA	NA	NA
WP_168499350.1\|10590747_10592175_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	9.7e-31	31.2
WP_075030117.1\|10592234_10593347_+	AAA family ATPase	NA	NA	NA	NA
WP_168501542.1\|10593460_10596229_+	hypothetical protein	NA	NA	NA	NA
WP_168499352.1\|10596260_10597613_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_168499354.1\|10597925_10600904_+	aminotransferase	NA	NA	NA	NA
WP_168499355.1\|10600912_10601944_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_168499356.1\|10602017_10603145_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_168499357.1\|10603189_10604179_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168499358.1\|10604365_10604722_-	hypothetical protein	NA	NA	NA	NA
WP_168499359.1\|10604879_10605617_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_168499360.1\|10605631_10606141_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A167R6J9	Powai_lake_megavirus	6.1e-12	45.8
WP_168499361.1\|10606337_10608287_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_168499363.1\|10609850_10610996_+	ROK family protein	NA	NA	NA	NA
WP_168499365.1\|10611270_10612599_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_168499367.1\|10612718_10613630_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168499369.1\|10613626_10614529_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168499371.1\|10614531_10616250_+	hypothetical protein	NA	NA	NA	NA
WP_168497310.1\|10616645_10617716_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168497312.1\|10617756_10618122_+	hypothetical protein	NA	NA	NA	NA
WP_168499373.1\|10618449_10618836_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_13

11040493 : 11114270

Moumouvirus(20.0%)

integrase,transposase

attL 11045013:11045029|attR 11113705:11113721

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168497310.1\|11040493_11041564_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168497312.1\|11041604_11041970_+	hypothetical protein	NA	NA	NA	NA
WP_168499872.1\|11042578_11042782_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_168499874.1\|11042801_11043734_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168501593.1\|11044840_11045902_-	alpha/beta hydrolase fold domain-containing protein	A0A2P1EM31	Moumouvirus	2.5e-52	35.8
11045013:11045029	attL	NA	NA	NA	NA
WP_168501594.1\|11049385_11050498_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168499876.1\|11050857_11053602_+	AAA family ATPase	NA	NA	NA	NA
WP_168501595.1\|11053717_11054452_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168499878.1\|11054697_11055948_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_168499881.1\|11056060_11056954_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168501596.1\|11057028_11057781_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168499883.1\|11057893_11058232_-	N-acetyltransferase	NA	NA	NA	NA
WP_168499885.1\|11059079_11060765_-	MFS transporter	NA	NA	NA	NA
WP_168499887.1\|11060932_11061670_-	DUF1275 family protein	NA	NA	NA	NA
WP_168499888.1\|11061650_11062175_-	DoxX family membrane protein	NA	NA	NA	NA
WP_028804950.1\|11062218_11062881_-	hydrolase	NA	NA	NA	NA
WP_168499890.1\|11063008_11064898_-	amidohydrolase family protein	NA	NA	NA	NA
WP_168499892.1\|11065318_11066290_+	alpha/beta hydrolase fold domain-containing protein	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	2.0e-56	38.2
WP_143609746.1\|11066310_11067030_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_168499894.1\|11067091_11068234_-	low temperature requirement protein A	NA	NA	NA	NA
WP_168499897.1\|11068296_11069664_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_168499899.1\|11069895_11070471_+	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_168499901.1\|11070499_11071069_+	hypothetical protein	NA	NA	NA	NA
WP_168499903.1\|11071351_11072104_-	hypothetical protein	NA	NA	NA	NA
WP_168499905.1\|11072406_11073087_+	hypothetical protein	NA	NA	NA	NA
WP_168499907.1\|11073097_11075842_-	S8 family serine peptidase	NA	NA	NA	NA
WP_168499909.1\|11077441_11077945_-	hypothetical protein	NA	NA	NA	NA
WP_168499911.1\|11079064_11079583_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168499913.1\|11079579_11080134_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168499915.1\|11082678_11085024_-	ABC transporter permease	NA	NA	NA	NA
WP_168499917.1\|11085020_11085713_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.5e-29	38.8
WP_168499918.1\|11085709_11086234_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_168499920.1\|11088927_11089221_-	hypothetical protein	NA	NA	NA	NA
WP_030978521.1\|11089609_11089903_-	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_168499922.1\|11090288_11091146_-	PhzF family phenazine biosynthesis isomerase	NA	NA	NA	NA
WP_168499924.1\|11091133_11092027_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_168499926.1\|11092414_11092840_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_168501597.1\|11092733_11093147_-	PHP domain-containing protein	NA	NA	NA	NA
WP_168499928.1\|11093131_11095411_-	PHP domain-containing protein	A0A0K1Y9G6	Streptomyces_phage	2.1e-59	29.0
WP_168499931.1\|11096265_11097081_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_168499933.1\|11097155_11098067_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_168499934.1\|11098141_11099155_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_168499935.1\|11099263_11099854_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168486661.1\|11100257_11100443_+	hypothetical protein	NA	NA	NA	NA
WP_168499936.1\|11100474_11100633_+	hypothetical protein	NA	NA	NA	NA
WP_168499937.1\|11100876_11102103_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_168499938.1\|11103556_11104306_+	hypothetical protein	NA	NA	NA	NA
WP_168486663.1\|11104733_11104958_+	hypothetical protein	NA	NA	NA	NA
WP_168499939.1\|11105724_11106537_+	hypothetical protein	NA	NA	NA	NA
WP_168501598.1\|11107287_11107584_-\|transposase	transposase	NA	NA	NA	NA
WP_168499940.1\|11109358_11110093_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_168499941.1\|11110113_11110497_-\|transposase	transposase	NA	NA	NA	NA
WP_168501599.1\|11111023_11111374_-	hypothetical protein	NA	NA	NA	NA
WP_168499943.1\|11112419_11112965_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_168499945.1\|11113022_11114270_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.1e-166	73.3
11113705:11113721	attR	NA	NA	NA	NA

DBSCAN-SWA_14

11262171 : 11328479

Virus_Rctr71(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168501613.1\|11262171_11263317_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJA0	Virus_Rctr71	1.8e-75	43.2
WP_168500085.1\|11265218_11266222_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168500087.1\|11268165_11269206_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_168500089.1\|11272321_11273836_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_168500091.1\|11274214_11274553_-	MerR family DNA-binding protein	NA	NA	NA	NA
WP_168500093.1\|11274973_11275633_+	hypothetical protein	NA	NA	NA	NA
WP_168500095.1\|11275629_11277084_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_168500097.1\|11277085_11277442_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_168500099.1\|11277378_11277747_-	hypothetical protein	NA	NA	NA	NA
WP_168500101.1\|11283258_11284041_+	TIGR03943 family protein	NA	NA	NA	NA
WP_168501614.1\|11284370_11285597_-	S8 family serine peptidase	NA	NA	NA	NA
WP_168500103.1\|11285870_11286692_+	TrmB family transcriptional regulator	NA	NA	NA	NA
WP_168500106.1\|11286931_11287237_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_168500108.1\|11287236_11287473_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_168500110.1\|11287548_11287713_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_168500112.1\|11287718_11287976_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_168500114.1\|11287972_11289148_+	cobalamin biosynthesis protein CobW	NA	NA	NA	NA
WP_168500116.1\|11289270_11289510_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_168500118.1\|11289588_11290314_-	TIGR03943 family protein	NA	NA	NA	NA
WP_168500120.1\|11290310_11291360_-	hypothetical protein	NA	NA	NA	NA
WP_168501526.1\|11294815_11295805_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_168499225.1\|11295873_11296287_-\|transposase	transposase	NA	NA	NA	NA
WP_168500122.1\|11297693_11297888_+	hypothetical protein	NA	NA	NA	NA
WP_168500124.1\|11297945_11300330_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_168500126.1\|11300410_11300893_-	SRPBCC family protein	NA	NA	NA	NA
WP_168500128.1\|11301324_11302230_-	bile acid:sodium symporter family protein	NA	NA	NA	NA
WP_168500130.1\|11302403_11303618_-	hypothetical protein	NA	NA	NA	NA
WP_168501615.1\|11304512_11305487_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	1.7e-18	29.2
WP_168501616.1\|11306084_11308415_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_168500132.1\|11308585_11308909_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_168500134.1\|11309074_11309521_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_168500136.1\|11309598_11309910_+	hypothetical protein	NA	NA	NA	NA
WP_168501617.1\|11310032_11311847_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_168500138.1\|11311901_11313395_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.8e-38	26.4
WP_168500140.1\|11313679_11314522_+	hypothetical protein	NA	NA	NA	NA
WP_168500142.1\|11314822_11315875_+	hypothetical protein	NA	NA	NA	NA
WP_168500144.1\|11316272_11316842_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_143609712.1\|11317413_11318475_+	DUF2776 family protein	NA	NA	NA	NA
WP_143609713.1\|11318804_11320169_+	glutamate decarboxylase	NA	NA	NA	NA
WP_168500146.1\|11320611_11321289_-	GAP family protein	NA	NA	NA	NA
WP_168500148.1\|11321697_11322360_+	hypothetical protein	NA	NA	NA	NA
WP_168500150.1\|11322477_11323830_+	Dyp-type peroxidase	NA	NA	NA	NA
WP_168500152.1\|11323886_11325017_+	catalase family protein	NA	NA	NA	NA
WP_168500154.1\|11325310_11326933_+	MFS transporter	NA	NA	NA	NA
WP_168500156.1\|11327369_11328479_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

11492813 : 11515414

Megavirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168500295.1\|11492813_11493410_-\|transposase	transposase	NA	NA	NA	NA
WP_168500296.1\|11494692_11495331_-	hypothetical protein	NA	NA	NA	NA
WP_168500297.1\|11495588_11496131_+	hypothetical protein	NA	NA	NA	NA
WP_168500298.1\|11497084_11497711_-	TetR/AcrR family transcriptional regulator C-terminal ligand-binding domain-containing protein	NA	NA	NA	NA
WP_168500299.1\|11497820_11498618_+	acetoacetate decarboxylase	NA	NA	NA	NA
WP_168500300.1\|11498761_11499163_+	tautomerase	NA	NA	NA	NA
WP_168500301.1\|11499482_11500007_-	hypothetical protein	NA	NA	NA	NA
WP_168500302.1\|11499990_11500155_+	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_168500303.1\|11500605_11501559_+	immunity 49 family protein	NA	NA	NA	NA
WP_168500304.1\|11501760_11502027_+	hypothetical protein	NA	NA	NA	NA
WP_168500305.1\|11502039_11503014_-	alpha/beta hydrolase fold domain-containing protein	K7YHC8	Megavirus	2.2e-63	40.9
WP_168501637.1\|11503421_11504093_+	transcriptional repressor LexA	A0A2K9V3G4	Faecalibacterium_phage	4.3e-13	37.4
WP_168500306.1\|11504555_11505023_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_168487254.1\|11507895_11508405_-	hypothetical protein	NA	NA	NA	NA
WP_168500307.1\|11508525_11509528_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168501638.1\|11511071_11511320_+\|transposase	transposase	NA	NA	NA	NA
WP_168500308.1\|11511350_11512451_-	LUD domain-containing protein	NA	NA	NA	NA
WP_168500309.1\|11512601_11513540_+	RNA polymerase sigma factor SigJ	NA	NA	NA	NA
WP_168500310.1\|11513683_11513896_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	3.3e-12	46.8
WP_168500311.1\|11513899_11514361_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168500312.1\|11514574_11515414_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_16

11622826 : 11704957

Thermobifida_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168500376.1\|11622826_11623672_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_168500377.1\|11623679_11624231_+	hypothetical protein	NA	NA	NA	NA
WP_168501657.1\|11624459_11624915_+	DUF664 domain-containing protein	NA	NA	NA	NA
WP_168498000.1\|11625652_11626909_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_168500378.1\|11627155_11628346_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_168501658.1\|11628403_11629246_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	3.0e-72	50.2
WP_168500379.1\|11629792_11630422_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168500380.1\|11630579_11630837_-	hypothetical protein	NA	NA	NA	NA
WP_168500381.1\|11631060_11631786_-	hypothetical protein	NA	NA	NA	NA
WP_168500382.1\|11632331_11632958_+	SLATT domain-containing protein	NA	NA	NA	NA
WP_168500383.1\|11632890_11633802_-	SigE family RNA polymerase sigma factor	NA	NA	NA	NA
WP_168500384.1\|11634117_11635182_-	hypothetical protein	NA	NA	NA	NA
WP_168500385.1\|11635253_11635697_-	hypothetical protein	NA	NA	NA	NA
WP_168500386.1\|11637267_11637663_+	hypothetical protein	NA	NA	NA	NA
WP_168500387.1\|11638067_11638877_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_168500388.1\|11640540_11640930_-	hypothetical protein	NA	NA	NA	NA
WP_168500389.1\|11641000_11641915_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_168501659.1\|11642087_11642378_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168486670.1\|11642376_11642640_+	hypothetical protein	NA	NA	NA	NA
WP_168500390.1\|11643234_11643624_+	hypothetical protein	NA	NA	NA	NA
WP_168500391.1\|11644114_11645134_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	NA	NA	NA
WP_168500392.1\|11646986_11648036_-	aldo/keto reductase	NA	NA	NA	NA
WP_168500393.1\|11648111_11648648_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168500394.1\|11651145_11652072_+	recombinase family protein	NA	NA	NA	NA
WP_168500395.1\|11652115_11652619_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_168500396.1\|11652691_11653078_-	glyoxalase	NA	NA	NA	NA
WP_168500397.1\|11653183_11653954_+	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_168501660.1\|11654262_11654745_-	hypothetical protein	NA	NA	NA	NA
WP_168500398.1\|11654893_11655658_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_168500399.1\|11656692_11657235_-	hypothetical protein	NA	NA	NA	NA
WP_168500400.1\|11657194_11657737_-	phosphotransferase	NA	NA	NA	NA
WP_168500401.1\|11660102_11661215_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168500402.1\|11661265_11662126_+	AfsR/SARP family transcriptional regulator	NA	NA	NA	NA
WP_168500403.1\|11662790_11663786_+	hypothetical protein	NA	NA	NA	NA
WP_168500404.1\|11664314_11664857_+	hypothetical protein	NA	NA	NA	NA
WP_168500405.1\|11665157_11665580_+	hypothetical protein	NA	NA	NA	NA
WP_168500406.1\|11665946_11666759_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_168500407.1\|11673787_11674612_+	AfsR/SARP family transcriptional regulator	NA	NA	NA	NA
WP_168500408.1\|11674949_11675768_+	acyl carrier protein	NA	NA	NA	NA
WP_168500409.1\|11677500_11677836_+	hypothetical protein	NA	NA	NA	NA
WP_168500410.1\|11680961_11681897_+	response regulator transcription factor	NA	NA	NA	NA
WP_168500411.1\|11682075_11682654_+\|transposase	IS607 family transposase	F9VHY9	Thermus_phage	8.7e-23	36.2
WP_168500412.1\|11684300_11684471_-	hypothetical protein	NA	NA	NA	NA
WP_101403454.1\|11688539_11689127_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_054229253.1\|11690607_11691018_+	acyl carrier protein	NA	NA	NA	NA
WP_075032275.1\|11691146_11691914_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.0e-19	34.0
WP_168500413.1\|11691947_11692448_+	3-hydroxylacyl-ACP dehydratase	NA	NA	NA	NA
WP_168500414.1\|11692430_11693621_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	7.1e-144	71.9
WP_168500415.1\|11695044_11695560_+	hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA
WP_168500416.1\|11700469_11701336_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_168501661.1\|11701462_11702455_+	aldo/keto reductase	NA	NA	NA	NA
WP_168500417.1\|11703766_11704957_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	1.4e-144	72.5

DBSCAN-SWA_17

11756018 : 11815134

Propionibacterium_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168500458.1\|11756018_11757176_-\|transposase	transposase	A0A1D8ETH9	Propionibacterium_phage	1.4e-80	47.5
WP_168500459.1\|11758257_11758719_-	hypothetical protein	NA	NA	NA	NA
WP_168500460.1\|11759812_11760172_-	hypothetical protein	NA	NA	NA	NA
WP_168500461.1\|11761413_11763171_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_168500462.1\|11765640_11765808_-	HNH endonuclease	NA	NA	NA	NA
WP_168500463.1\|11769237_11769813_-\|transposase	IS607 family transposase	F9VHY9	Thermus_phage	9.3e-25	37.0
WP_168500464.1\|11770197_11770671_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_168500465.1\|11770813_11771737_+	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_168500466.1\|11772047_11772782_-	DUF1345 domain-containing protein	NA	NA	NA	NA
WP_075030175.1\|11773176_11773356_+	hydrophobic protein	NA	NA	NA	NA
WP_168500467.1\|11773690_11774545_-	NmrA family NAD(P)-binding protein	NA	NA	NA	NA
WP_168500468.1\|11774766_11775702_+	hypothetical protein	NA	NA	NA	NA
WP_168500469.1\|11775881_11776394_-	hypothetical protein	NA	NA	NA	NA
WP_168500470.1\|11776741_11777125_+	hypothetical protein	NA	NA	NA	NA
WP_168501663.1\|11780191_11781187_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_168500471.1\|11781326_11781935_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168500472.1\|11782258_11783224_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_168500473.1\|11783483_11783900_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_168500474.1\|11784634_11784799_+	hypothetical protein	NA	NA	NA	NA
WP_168500475.1\|11784837_11786448_+	benzoylformate decarboxylase	NA	NA	NA	NA
WP_168500476.1\|11786500_11787262_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_168500477.1\|11787359_11787689_-	hypothetical protein	NA	NA	NA	NA
WP_168500478.1\|11788389_11789220_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168500479.1\|11789389_11789758_-	hypothetical protein	NA	NA	NA	NA
WP_168500480.1\|11790088_11790433_-	hypothetical protein	NA	NA	NA	NA
WP_168501664.1\|11791176_11791431_-	hypothetical protein	NA	NA	NA	NA
WP_168500481.1\|11795426_11795696_+	hypothetical protein	NA	NA	NA	NA
WP_168500482.1\|11795695_11796589_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-32	35.8
WP_168500483.1\|11796697_11797318_-	hypothetical protein	NA	NA	NA	NA
WP_168500484.1\|11797540_11799169_+	PucR family transcriptional regulator	NA	NA	NA	NA
WP_168500485.1\|11801176_11801749_+	transcriptional regulator	NA	NA	NA	NA
WP_168500486.1\|11803073_11803454_+	hypothetical protein	NA	NA	NA	NA
WP_168500487.1\|11803587_11804004_+	hypothetical protein	NA	NA	NA	NA
WP_052067739.1\|11804297_11804519_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_168500488.1\|11804515_11805223_+	hypothetical protein	NA	NA	NA	NA
WP_168500489.1\|11806856_11807408_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168501665.1\|11810834_11812217_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_168500490.1\|11812275_11813856_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_097285068.1\|11813942_11814197_-	hypothetical protein	NA	NA	NA	NA
WP_168500491.1\|11814411_11815134_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.8e-26	34.0

DBSCAN-SWA_18

11825739 : 11872688

uncultured_Caudovirales_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168500498.1\|11825739_11826918_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168500499.1\|11826962_11828081_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_168500500.1\|11828833_11829010_+	hypothetical protein	NA	NA	NA	NA
WP_168500501.1\|11830020_11831061_-	hypothetical protein	NA	NA	NA	NA
WP_168500502.1\|11832373_11832706_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	9.5e-06	43.3
WP_168500503.1\|11832702_11833449_+	hypothetical protein	NA	NA	NA	NA
WP_168501666.1\|11834193_11834499_+	hypothetical protein	NA	NA	NA	NA
WP_168500504.1\|11834495_11834756_+	hypothetical protein	NA	NA	NA	NA
WP_168501667.1\|11834853_11835255_-	hypothetical protein	NA	NA	NA	NA
WP_168500505.1\|11835439_11835961_-	hypothetical protein	NA	NA	NA	NA
WP_168501668.1\|11836413_11836632_+	hypothetical protein	NA	NA	NA	NA
WP_168500506.1\|11836780_11837617_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_168500507.1\|11838829_11839540_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_143615159.1\|11840907_11841207_-	hypothetical protein	NA	NA	NA	NA
WP_168501669.1\|11841334_11841634_-	hypothetical protein	NA	NA	NA	NA
WP_168500508.1\|11841919_11842330_-	hypothetical protein	NA	NA	NA	NA
WP_168500509.1\|11842469_11842784_-	hypothetical protein	NA	NA	NA	NA
WP_168500510.1\|11842732_11843782_-	hypothetical protein	NA	NA	NA	NA
WP_168500511.1\|11843961_11844156_+	hypothetical protein	NA	NA	NA	NA
WP_168500512.1\|11844234_11844834_-	hypothetical protein	NA	NA	NA	NA
WP_168487928.1\|11844964_11845501_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168487930.1\|11845544_11846015_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_168500513.1\|11847359_11847905_+	hypothetical protein	NA	NA	NA	NA
WP_168486692.1\|11847914_11848259_-	hypothetical protein	NA	NA	NA	NA
WP_168486690.1\|11848318_11849236_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168486688.1\|11849506_11850958_+\|transposase	transposase	NA	NA	NA	NA
WP_168500514.1\|11851126_11852215_-	glycosyltransferase	NA	NA	NA	NA
WP_168486685.1\|11853240_11853687_+	hypothetical protein	NA	NA	NA	NA
WP_168500515.1\|11854128_11854734_+	hypothetical protein	NA	NA	NA	NA
WP_168500516.1\|11856399_11857095_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_168500517.1\|11858199_11859459_+	MFS transporter	NA	NA	NA	NA
WP_168500518.1\|11859538_11860393_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_168500519.1\|11862456_11862981_-	hypothetical protein	NA	NA	NA	NA
WP_168500520.1\|11863284_11863956_+	hypothetical protein	NA	NA	NA	NA
WP_168500521.1\|11864884_11865934_+	hypothetical protein	NA	NA	NA	NA
WP_168500522.1\|11866019_11866619_+	hypothetical protein	NA	NA	NA	NA
WP_168500523.1\|11866822_11867446_-	hypothetical protein	NA	NA	NA	NA
WP_168500524.1\|11868575_11870051_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.8e-47	33.5
WP_168500525.1\|11870233_11870689_-	hypothetical protein	NA	NA	NA	NA
WP_168500526.1\|11870762_11871329_-	hypothetical protein	NA	NA	NA	NA
WP_168500527.1\|11871473_11872688_+\|transposase	transposase	A0A068A1P5	Thermus_phage	5.5e-59	37.5

DBSCAN-SWA_19

11893467 : 11956707

Streptococcus_phage(22.22%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168500537.1\|11893467_11893773_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	2.1e-07	38.1
WP_168500538.1\|11894661_11894871_-	hypothetical protein	NA	NA	NA	NA
WP_168500539.1\|11895108_11896584_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_168500540.1\|11897034_11898294_-	M24 family metallopeptidase	NA	NA	NA	NA
WP_168500541.1\|11898428_11899376_-	NAD-binding protein	NA	NA	NA	NA
WP_168500542.1\|11900237_11900822_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_143605000.1\|11901286_11901964_-	FCD domain-containing protein	NA	NA	NA	NA
WP_143605001.1\|11901950_11902502_-	VOC family protein	NA	NA	NA	NA
WP_168500543.1\|11902665_11904852_+	MFS transporter	NA	NA	NA	NA
WP_168500544.1\|11904894_11906253_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_168500545.1\|11906462_11907683_+\|transposase	transposase	A0A1D8ETH9	Propionibacterium_phage	2.8e-87	47.8
WP_143605004.1\|11907772_11908825_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_168500546.1\|11909483_11910719_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_168500547.1\|11910727_11911606_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_168500548.1\|11911602_11912640_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_143605008.1\|11912636_11913368_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.7e-11	22.8
WP_143605009.1\|11913370_11914093_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-10	26.7
WP_168500549.1\|11914735_11915833_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_168500550.1\|11915839_11916727_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_143614938.1\|11916723_11917764_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_168501671.1\|11920142_11920922_+	isochorismatase family protein	NA	NA	NA	NA
WP_168501672.1\|11920949_11921246_+	DUF1275 family protein	NA	NA	NA	NA
WP_168500551.1\|11921259_11922450_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	3.1e-147	73.0
WP_168500552.1\|11922604_11922853_+	hypothetical protein	NA	NA	NA	NA
WP_143615169.1\|11922978_11923425_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_168500553.1\|11924011_11925304_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_143605016.1\|11925494_11926172_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_143605017.1\|11926450_11926996_-	flavin reductase family protein	NA	NA	NA	NA
WP_168500554.1\|11927573_11928563_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_168500555.1\|11928570_11929467_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168500556.1\|11929463_11930324_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_168501673.1\|11930350_11931175_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	8.0e-30	34.6
WP_143605021.1\|11931181_11932279_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_143614945.1\|11932327_11932894_+	YceI family protein	NA	NA	NA	NA
WP_143614946.1\|11932914_11933721_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_143605024.1\|11933738_11934059_+	Dabb family protein	NA	NA	NA	NA
WP_143605025.1\|11934055_11934562_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_168500557.1\|11934706_11935273_-	hypothetical protein	NA	NA	NA	NA
WP_168500558.1\|11935821_11936547_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.6e-26	30.2
WP_168500559.1\|11936751_11936904_+	hypothetical protein	NA	NA	NA	NA
WP_168500560.1\|11937077_11937467_+	hypothetical protein	NA	NA	NA	NA
WP_168500561.1\|11937748_11938171_+	SsgA family sporulation/cell division regulator	NA	NA	NA	NA
WP_168500562.1\|11938290_11938995_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168500831.1\|11939092_11940799_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_168486672.1\|11940975_11941176_+	hypothetical protein	NA	NA	NA	NA
WP_168500558.1\|11941552_11942278_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.6e-26	30.2
WP_168500563.1\|11942345_11942708_+	hypothetical protein	NA	NA	NA	NA
WP_168501674.1\|11943029_11943572_-	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_168500564.1\|11943598_11944105_-	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_168500565.1\|11944740_11945778_-	hypothetical protein	A0A141HSE6	Bacillus_phage	5.6e-12	30.7
WP_168500566.1\|11946134_11949917_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168500567.1\|11950014_11950446_-	hypothetical protein	NA	NA	NA	NA
WP_168500568.1\|11951193_11951646_-	hypothetical protein	NA	NA	NA	NA
WP_168500569.1\|11951700_11952381_-	hypothetical protein	NA	NA	NA	NA
WP_168500570.1\|11952589_11952964_-	hypothetical protein	NA	NA	NA	NA
WP_168500571.1\|11952994_11953540_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_168500572.1\|11953923_11954751_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_168500573.1\|11954934_11955552_-	hypothetical protein	NA	NA	NA	NA
WP_168500574.1\|11955852_11956707_+\|protease	trypsin-like serine protease	NA	NA	NA	NA

DBSCAN-SWA_20

11971539 : 12040992

Salmonella_phage(12.5%)

tRNA,transposase,integrase

attL 12002083:12002100|attR 12045773:12045790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168500581.1\|11971539_11971917_-\|transposase	transposase	NA	NA	NA	NA
WP_168500582.1\|11971930_11972524_+	hypothetical protein	NA	NA	NA	NA
WP_168500583.1\|11972531_11974247_+	hypothetical protein	NA	NA	NA	NA
WP_168497974.1\|11974859_11976500_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_168500584.1\|11978599_11979796_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_168500585.1\|11980380_11981259_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_168500586.1\|11981265_11982804_-	amino acid permease	NA	NA	NA	NA
WP_168500587.1\|11982938_11983571_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_168500588.1\|11985280_11985592_+	hypothetical protein	NA	NA	NA	NA
WP_168500589.1\|11985642_11986869_+	hypothetical protein	NA	NA	NA	NA
WP_168500590.1\|11988257_11988446_+	hypothetical protein	NA	NA	NA	NA
WP_097282962.1\|11988551_11988947_-	hypothetical protein	NA	NA	NA	NA
WP_168500591.1\|11989355_11990141_+	hypothetical protein	NA	NA	NA	NA
WP_168501677.1\|11991326_11993258_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_168500592.1\|11994360_11994756_+	hypothetical protein	NA	NA	NA	NA
WP_168500593.1\|11995899_11996673_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_168500594.1\|11996676_11997033_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_168500595.1\|11997032_11997668_-	7-carboxy-7-deazaguanine synthase	A0A1W6JS84	Salmonella_phage	3.5e-17	32.3
WP_168500596.1\|11997670_11998366_-	7-cyano-7-deazaguanine synthase QueC	A0A126HGA1	Vibrio_phage	1.6e-31	36.6
WP_168500597.1\|11998490_11999384_+	hypothetical protein	NA	NA	NA	NA
WP_168500598.1\|11999383_12000517_+	DGQHR domain-containing protein	NA	NA	NA	NA
WP_168500599.1\|12000513_12001734_+\|tRNA	queuine/other tRNA-ribosyltransferase	NA	NA	NA	NA
WP_168500600.1\|12001775_12002879_+	DGQHR domain-containing protein	NA	NA	NA	NA
12002083:12002100	attL	NA	NA	NA	NA
WP_168500601.1\|12002963_12003215_+	hypothetical protein	NA	NA	NA	NA
WP_168500602.1\|12004841_12006860_-	hypothetical protein	NA	NA	NA	NA
WP_168500603.1\|12006849_12007374_-	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein	NA	NA	NA	NA
WP_168501678.1\|12007370_12011837_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_168500604.1\|12011858_12012542_-	hypothetical protein	NA	NA	NA	NA
WP_168500605.1\|12012538_12015595_-	ATP-binding protein	NA	NA	NA	NA
WP_168500606.1\|12015587_12016454_-	hypothetical protein	NA	NA	NA	NA
WP_168500607.1\|12016453_12019048_-	DEAD/DEAH box helicase	F2NZ48	Diadromus_pulchellus_ascovirus	1.3e-17	26.5
WP_168500608.1\|12019047_12022089_-	restriction endonuclease subunit R	A0A1B1IUI1	uncultured_Mediterranean_phage	5.6e-12	22.2
WP_168500609.1\|12022135_12022273_+	hypothetical protein	NA	NA	NA	NA
WP_168500610.1\|12022784_12023882_+\|transposase	transposase	NA	NA	NA	NA
WP_168500611.1\|12024553_12024946_+	hypothetical protein	NA	NA	NA	NA
WP_168500612.1\|12026312_12027404_-\|transposase	transposase	NA	NA	NA	NA
WP_168500613.1\|12027696_12028011_-\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	8.1e-15	40.2
WP_168500614.1\|12028051_12029401_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.0e-35	36.7
WP_168500615.1\|12029393_12030011_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.7e-14	30.1
WP_168500616.1\|12030037_12030328_-\|transposase	transposase	NA	NA	NA	NA
WP_168500617.1\|12032939_12033170_+	hypothetical protein	NA	NA	NA	NA
WP_168500618.1\|12033262_12033433_-	hypothetical protein	NA	NA	NA	NA
WP_168501679.1\|12033846_12034923_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1J0MC50	Streptomyces_phage	1.2e-46	36.3
WP_168500619.1\|12034961_12035909_-	ATP-grasp ribosomal peptide maturase	NA	NA	NA	NA
WP_168500620.1\|12035905_12036199_-	putative ATP-grasp-modified RiPP	NA	NA	NA	NA
WP_168500621.1\|12036547_12036688_-	hypothetical protein	NA	NA	NA	NA
WP_168500622.1\|12036776_12037160_-	hypothetical protein	NA	NA	NA	NA
WP_143653886.1\|12037198_12038392_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_143656914.1\|12039828_12040992_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
12045773:12045790	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050974

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection