CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP051157	Wolbachia endosymbiont of Ctenocephalides felis strain wCfeJ chromosome, complete genome	11 crisprs	DEDDh,RT	6	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP051157_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_1

71170-71262

Orphan

Consensus_repeat	Method
AATCGAAAATAAGAGGTCTCTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_1

>merge|NZ_CP051157|1|71170-71262|CRISPRCasFinder
AATCGAAAATAAGAGGTCTCTTATATTTATCCACGCAAATAGATAAGCCTTATTTTCATTTTTATATAGAATCGAAAATAAGAGGTTTCTTAT

>NZ_CP051157|1|1|71170-71262|CRISPRCasFinder
AATCGAAAATAAGAGGTCTCTTAT	ATTTATCCACGCAAATAGATAAGCCTTATTTTCATTTTTATATAG
AATCGAAAATAAGAGGTTTCTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455326.1\|74535_75735_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234934
NZ_CP051157.1\|WP_168455325.1\|73303_74536_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP051157.1\|WP_168455324.1\|72740_73247_+\|collagen-like-protein	unknown	unknown	gnl\|CDD\|189968
NZ_CP051157.1\|WP_168455331.1\|78031_79180_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP051157.1\|WP_168455318.1\|63531_64983_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NZ_CP051157.1\|WP_168455316.1\|62405_62615_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456221.1\|71909_72452_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455328.1\|76273_76948_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP051157.1\|WP_168455317.1\|62692_63304_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP051157.1\|WP_168455327.1\|75782_76244_+\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|272875
NZ_CP051157.1\|WP_168455314.1\|59934_60513_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455321.1\|68897_70658_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP051157.1\|WP_168455319.1\|65881_67513_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NZ_CP051157.1\|WP_168455315.1\|60597_62097_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP051157.1\|WP_168455313.1\|58508_59705_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP051157.1\|WP_168455320.1\|67558_68731_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_CP051157.1\|WP_168455329.1\|76965_77127_-\|type-IV-secretion-system-protein-VirB7	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455330.1\|77180_77879_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP051157.1\|WP_168455257.1\|65099_65855_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455323.1\|71432_71612_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168455326.1\|74535_75735_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|234934	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	4.66823e-159
NZ_CP051157.1\|WP_168455328.1\|76273_76948_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.22642e-83
NZ_CP051157.1\|WP_168455331.1\|78031_79180_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	3.87369e-138
NZ_CP051157.1\|WP_168455318.1\|63531_64983_+\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NZ_CP051157.1\|WP_168455320.1\|67558_68731_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.92604e-133
NZ_CP051157.1\|WP_168455321.1\|68897_70658_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	2.71438e-162
NZ_CP051157.1\|WP_168455325.1\|73303_74536_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	4.12585e-89
NZ_CP051157.1\|WP_168455327.1\|75782_76244_+\|heme-biosynthesis-protein-HemY	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.45822e-31
NZ_CP051157.1\|WP_168455319.1\|65881_67513_-\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP051157.1\|WP_168455315.1\|60597_62097_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP051157.1\|WP_168455313.1\|58508_59705_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP051157.1\|WP_168455317.1\|62692_63304_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.07182e-13
NZ_CP051157.1\|WP_168455330.1\|77180_77879_-\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	2.69113e-75
NZ_CP051157.1\|WP_168455324.1\|72740_73247_+\|collagen-like-protein	gnl\|CDD\|189968	pfam01391, Collagen, Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.	5.55889e-11

>NZ_CP051157.1|WP_168455321.1|68897_70658_+|DNA-primase
MDHIDIIKSRLLLSDIVGKKVRLIKRGNSFVGLCPFHNEKTPSFSVSDTKGLYYCFGCSAHGDVFEFISQTEGLSFKEALERLASATGVELPKNLNITKESDKLFSTLSLAANWFVQKKQGVTDYLRQRKISPEIIDKFKIGYAPSSGLKEYLNSSGIEDEILIDIGLINKNSRDYFYDRLIFPIHNIAGKVIGFGGRALSSEQQPKYLNSPESQLFKKRENLYGLNFALSEIRKRQHVFVVEGYMDVIALHQAGISNTVAPLGTAISAEQIQNLWRYTKEISICMDGDSAGYLAAARVAEFALPILEPGYTLKFVTLPSDKDPYDVCNELEYKKEDVLSALDRLAELHSEYLWRHIVNSSLQSYEKLAPEKYSVLEHKFMKYVNTISNSSIRRYYRDYFYNKVSELRRNSKKQIFNSKIRATKGEYLHNKSPELIEAEQNQAIILHIVIEFPEILHHPIFFEQFSHFEFTNAKMKKLQQHVISVTNSGSKLNKEALLREFEQSSNIETVRFIFEKTSVLNSQLNERKSAEIVWNNIVLRKELSVLEEEKVRARLSGNFDLEERLIEQIKQIENSMQEMQMEFIQK
>NZ_CP051157.1|WP_168455320.1|67558_68731_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MLDVISIASDHAGYELKSEIKSYLEARGYVVIDRGCTAKQKSVDYPDYAVKVVEDITNKKANYGILICGTGLGMSTVANRFEGIYAALCNSVEIAKLAREHGNANILCLSAEFTASELAKDIVKQFLETEFSKESRHKKRLDKLSNITSSSRKKAKTYSEDEVSKFAKMAGEWWNENGKFKPLHMMNPVRVSYIVEKIKELKKCDLKELSLLDVGCGGGILSESMARVGISVAGIDVCEENIKVAQSHAKKVGLNIEYTHTSIEELKSDKKYDVVLLMEVVEHVDNLGLFMKKAAELLKPEGLIFISTINRTIKSFCLAIIGAEYILNWLPKGTHNWNKFLKPSEIANYLRENNITPQDMTGIEYNVIKREWNLTKSVDVNYILCGSIVS
>NZ_CP051157.1|WP_168455319.1|65881_67513_-|methionine--tRNA-ligase
MKQFGNFYITTPIYYVNDRPHIGHAYTSLLCDVVARFMRLAGKSVKFTTGTDEHGQKIEKAAKARRMQPKEFTDEVSVSFRELAKFMNFQYDDFIRTTEERHKEAVVALWNRLEEKGQIYLGSYSGWYSVRDEAFYQESELIDGKAPTGAEVQWIKEESYFFRLSNWQDKLLELYKNQPDFIFPESRRNEVVSFVKSGLTDLSISRTSFNWGIKVPGNDKHIIYVWIDALTNYLTSVGFPSTEGEEYKRFWAEPQSIIPVLDTGIQKETQIPASRAGMTSANNSFNVHVIGKDILRFHAVYWPAILLAADLPLPKQIAVHGWWLNEGEKISKSLGNVIDPIGLAQEFGVDQLRYFLLREASFAQDGNFSKKNMISRINSELANNIGNLVQRTISFLHKQCAGIVPTIDRSLLKGDESLPNCKAILDQVINHLSKYEFSQIILLIVNISSEANVYIDRSAPWTLSKTDRERMNLVIYKLLEYIRIIGILLQPIVPRSAKMILDQIQISKEQRDLKSLCNACVSLGITLPKPTPVFLRVETKEEE
>NZ_CP051157.1|WP_168455257.1|65099_65855_+|hypothetical-protein
MKNIFSKSNAPYLGVTIAVVGLLASGVFALAPYVAILAPVAALGVGLPFIISGAVLSVVAGVLSAVAISKNNTISQQEKFENLVAARKKEEAKERAELKAKGLLPDAIELPGTPRQENFSNRQEKFENRVAQRKAEEAKERAELKLPDVIELPYKLISVPDIIELPYKETEAPIQPNQPTKEEDGQGWISWGRDKVKSLGSKVNTVAREYAPHVVPTALTAATIFLASSFGIEKGESEFGYTNGTQCFPYR
>NZ_CP051157.1|WP_168455318.1|63531_64983_+|replicative-DNA-helicase
MNELANLIDSRNVDKEICKLPHNLEAEQMLIGAMIRDNRICDAVEDIITADNFYDPLHQSIFAQISKTRKHGIVANELSLKMFFENNERFTECGGVEYLAKLAAKASIALDIYSLTRIIRDTHLRRCLIKLGQEIVDDSYNYDIENPAQVQIEQAMTKLFNLAVKKQGEKTYIKLANSVKDVVEKISTLKNNPEALGITTGLQDLNQLLGGLQKSDLLILAARPSMGKTALALNIALNACKVLQKRADKQHYVAFFSLEMSAEQLTARLITIDSGISYYKALTGRISDFELHEFINASTELSELPFVIDDTPALSISALRTRIRLLYQLYNVEVVFIDYLQLIRGTTKRSSENRVQEISEVTQGLKAIAKELNIPIVALSQLSRSVEQRDDKKPQLADLRDSGSIEQDADIVMFLYREEYYELRKQPNEGSNKHREWQEKMEKIRNIAELIIAKQRNGPIGSVKLYFDSNRGAFKDYTERHSS
>NZ_CP051157.1|WP_168455317.1|62692_63304_-|RDD-family-protein
MLHKIFNRLFSILSSMNAIQKVKKDERGICYVTGFRRYISVLLDLIIIVLFLQFCIQAWNQLLTNSEDGKTLSQITAKHQMQVPLSTEEKTVQVRLSQLWILIWILSQIVQFIMLFSYVTYMWVRFAATPGKLLLGLRVVDAQTFKKMTLRQAIKRFFSFILSVAPLFLGFIWSNFNKRCQTWHDKIAGTVVVTSKSLKEYKG
>NZ_CP051157.1|WP_168455316.1|62405_62615_-|hypothetical-protein
MSFKWLSVNLSIFCGVILVVFFSAITVLSSLVIRVADTGTHSFFHWIPASSTGMTSFDEHKKSLIFDSV
>NZ_CP051157.1|WP_168455315.1|60597_62097_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MIANINTVALQGINIVNVNAQIHMANGIPAFNIVGLPDKTVAESKERIRAALNSINLLLPPRRITINLSPADLLKEGSHYDLAIAIGLLVVMNIIPVERVQSYIIMGELALDGRVISVSGVLPAVINAKQKNKGIICPRGNGVEASWAKNVPVLAIEKLTDIISHFKGEQSIEPVVFNKPKEKRSVPDMKDIKGQIVAKRAAEIAAAGGHNMLLVGPPGTGKSMLAKRFMGLLPDLTEQEMIDVNIISSITQAGNEIFKVTRPFREPHHSCSMPAMIGGGKNAKPGEITMAHNGVLFLDELPEFPRLVLDSLRQPLEDRKVTIARANAHITYPAHFQLIAAMNPCRCGYLGDANRSCNKAPRCGTDYRNRISGPLLDRIDICIEMPIVSILSPETYSQGESTCSIRERVIAARKIQAERYSKLSITCNSEVSGDALDKFAKPDQEGLELLKYVLKENYISNRGYTRILRVARTIADLTRSEEVKRAHIAEALNYRIRAY
>NZ_CP051157.1|WP_168455314.1|59934_60513_-|hypothetical-protein
MALTNYQYKKGDSVFHSISKGYNQAEDFWGIPGAIGGLGEYTRNNKWKTAAVVGVVVAVPLIAAYILSPVYAGFVNTTTQSAYAGMITGGKGLYALAVTNPVFTGLLAAAIVGTIGALIYMNYSKANQIREQANQIDGVKKAVLEACEKDDQSNPNLQDKKIKIAGKNDPLQVLTNVAVKLGLVQVQTQATA
>NZ_CP051157.1|WP_168455313.1|58508_59705_-|cell-division-protein-FtsZ
MSIDLSLPELPVLHPRITVIGVGGAGGNAVNNMIHSNLQGVNFVVANTDAQALEKSLCDKKIQLGINLTKGLGAGALPDVGKGAAEESIDEIMEHIKDSHMLFITAGMGGGTGTGAAPVIAKAAREARAAVKDKALKEKKILTVGVVTKPFGFEGVRRMRIAELGLEELQKYVDTLIVIPNQNLFRIANEKTTFADAFKLADNVLHIGIRGVTDLMVMPGLINLDFADIETVMSEMGKAMIGTGEAEGEDRAISAAEAAISNPLLDNVSMKGAQGILINITGGGDMTLFEVDAAANRVREEVDENANIIFGATFDQAMEGKVRVSVLATGIDNSVPRSDRTETTPSPVSQNETSEEEKFKWSYSQTPVPETKSAEQVSEEVKWSGNIYDIPAYLRRKK
>NZ_CP051157.1|WP_168455323.1|71432_71612_+|hypothetical-protein
MKKKTRSQCRSTGMTSLGHSDYIHNPVIPALVHFLKVSFQHVTLESSEKRVDPSVGALG
>NZ_CP051157.1|WP_168456221.1|71909_72452_+|hypothetical-protein
MKAQSNDMSVIPTPQRKNTVITKQTAQPRRIIEMQETDKSEEFIPIPKRNVNKKLGDIVKPKEVKNEIKSEKSVESKKNELAVTEIINSIRDKLTKCWSIPENIAYKENFSIKINLLLSNQGEIIMADVADSSSYKNNPLFRSIADNAMRAAYKCSPITGLPVEHYHIWREVTLDFILNG
>NZ_CP051157.1|WP_168455324.1|72740_73247_+|collagen-like-protein
MSQSIWKWGNTAHITKMSIEGTIALASLAAAITAILVTTNVIAVPESLAFVSTIVNPIGIAVLFVAAVYFAAKAISSYQQMSVAKGEKGDRGEQGQKGEQGLRGDKGDKGDPGLKGEKGDKGDKGDPGPKGEKGEVSEEALKTQLTSVLENPDVVRVLKEKVSEIAQI
>NZ_CP051157.1|WP_168455325.1|73303_74536_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTDDYFMSIALKLAEKALGSVAPNPAVGCVITKDGMVVGKGYTGIGGRPHAEVIALQNAKDLTHGATMYVTLEPCCHFGVTEPCTAEVIRAGIKRVVIATIDPDTRVSGRGIKVLKEAGIEVKQGIMQEEAEKLNIGFFTTRKLHRPFTACKVATTLDGKIATFTSNSKWITGKQTRNWVHTLRAKYDAIMIGSNTLINDDPLLTCRLPGLEDRSPTRLIIDSQGRLSEEHNIAKTANKVATWVITNKEVEKKIKNINYLIVNSNNKPPAISASPSVIPVPRHWDPENLIANEHTRQLCDKNWIPASRAGMTSGRKAGKVCLKDTVSKLVSEVGITRLLVEGGGVLITELLKSDLIDRLIICRSGKILGNDAIPFVGNLGIQSINNCYQFKKAEVIDLDEDIVEVWDRLL
>NZ_CP051157.1|WP_168455326.1|74535_75735_-|deoxyguanosinetriphosphate-triphosphohydrolase
MSNNNFLLSYACFPSKTRGRYFKELEDENRSCFQRDRDRIIHSNAFRKLEYKTQVFINYEHDYYRTRLTHSLEVAQIARSIARRLGLDEDITECIALAHDLGHPPFGHTGENALKKSVQDLGLDTEKYEFDHNVQTIRILTYLEQKHADFDGMNLSWEVIEGVAKHNGPLLGQNAVSHTNNPLLLEYNEKYDLKLEEFSSVEAQVASIADDIAYSVHDLDDALRGNLVTVEDLLDVPLIGKTFKDIKTQYSELSQNKLIHESLSRAIGIMVRDVISQTKKNIEDYKIKSVEDVRSLDKMLVTFSPEVVNATKEIKKFNMEKIYRSYKLGRTMNKAKRIVQELFQCFYENPRLLPVEWNRLACEHKRSVVICDYISGMTDRFAIHEHRRIFDTSYEMTSF
>NZ_CP051157.1|WP_168455327.1|75782_76244_+|heme-biosynthesis-protein-HemY
MSTNYNINLTDNALKKIHSLAEQEGNKDYVLRVAVSGGGCSGFKYDFLIDQINKNLSLDDDEDDDYDDEFDDEDDDDYEDSEDYRSHSSFSRRSKDIVINDKNGNPVLMVDNCSAKFLNNSVIDYTENLSGSGFQIKNALAKSRCGCGNSFSI
>NZ_CP051157.1|WP_168455328.1|76273_76948_+|ABC-transporter-ATP-binding-protein
MSGDVALELICVGKSFKKSPAIIENINLRVAKGQVVALIGSSGSGKTTILQIAGLLDKPTSGVVAIDGVNCTQASNKYKTYIRRSFLSFVYQFHYLLQELSVLENVMLPQLIAGKSKAEAMKSTQTILEKFSLENKASSMISGISGGERQRVGIARSIVNSPKLLLADEPTGNLDPTNSLDVFLLLYSYVKKNNSSMLIVTHNHSLAEKADSVLQLKNGSLVKL
>NZ_CP051157.1|WP_168455329.1|76965_77127_-|type-IV-secretion-system-protein-VirB7
MFRRRLLFLVLATSMLSGCLFSKPRKLKSPCIRSNASTSCELYPVNDHWLGKK
>NZ_CP051157.1|WP_168455330.1|77180_77879_-|alpha/beta-hydrolase
MVEVFLNNAAKKIEGEYHQSKNVNAPVVLILHHHPQYGGNMDSKMVHSMYTSFIDNNFSALKINFRGVGKSTGTFDKGMGELTDAAVAIDWLQEHNLSNVPIWVAGFSFGAWVAMQLTMRRPEIVGFIALSPPATKYDFSFLSPCPVPGLIIQSNNDTISEESDVTELAKRLMNSVKSDYMEYHIIDDTNHFLRGKEEEVTQIIDDYIKLRLSSAAISSKNVRKEIRIREYV
>NZ_CP051157.1|WP_168455331.1|78031_79180_+|cysteine-desulfurase
MTDKPSGPLGNSDHVYADYNATTPISNCVKKSILEVLSKQVLNASSLHRKGQEARKILYDARDNIRSIIGIPSNKEIVFTSGATEANNLVMRGITGFQHVISAIEHPSILNSARNPHIIPVNQEGIVDLLELEKILSKLEGSKVMVSVMMANNETGVVQPVKEIAEMVHKFGAICHTDAAQSVGKIEVNMEDLGVDLLTLSAHKFGGIAGSGVLIFDKNLIIKPIIIGGGQEKGLRGGTENIVAIAGLSAALKNIPNLLSKADEIKELRDQLECELLNLASEIKIFGKNSKRLPNTSFVYMPRVKSDVQLMNFDLHNIAVSNGSACSSGKVEPSYVLLAMGATKEQAQCSIRISIGPQTKPLDIKKIVDCWYDIYKKNTLYM

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Crispr_ID: NZ_CP051157_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_2

166252-166345

Orphan

Consensus_repeat	Method
AATCGAAAATAAGAGGTCTCTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_2

>merge|NZ_CP051157|2|166252-166345|CRISPRCasFinder
AATCGAAAATAAGAGGTCTCTTATATTCATCTATACAAATAGATAAAGCTTTATTTTCATTTTTACGCAAAATCGAAAATAAGAGGTTTCTTAT

>NZ_CP051157|2|2|166252-166345|CRISPRCasFinder
AATCGAAAATAAGAGGTCTCTTAT	ATTCATCTATACAAATAGATAAAGCTTTATTTTCATTTTTACGCAA
AATCGAAAATAAGAGGTTTCTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455402.1\|161903_165002_+\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|223124
NZ_CP051157.1\|WP_168455398.1\|154655_155366_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|168637
NZ_CP051157.1\|WP_168455401.1\|160373_161249_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP051157.1\|WP_168455258.1\|160039_160177_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455409.1\|174580_174997_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456228.1\|153759_154380_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379082
NZ_CP051157.1\|WP_168455410.1\|175135_176164_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP051157.1\|WP_168455397.1\|153134_153758_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP051157.1\|WP_168456230.1\|167581_168277_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NZ_CP051157.1\|WP_168456232.1\|176165_177227_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP051157.1\|WP_168455404.1\|166424_167432_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455399.1\|155600_156218_+\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237680
NZ_CP051157.1\|WP_168455400.1\|157359_159267_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222980
NZ_CP051157.1\|WP_168455408.1\|173272_174559_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182613
NZ_CP051157.1\|WP_168455406.1\|168746_170537_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP051157.1\|WP_168455403.1\|165090_165603_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456229.1\|156226_157219_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NZ_CP051157.1\|WP_168455405.1\|168395_168743_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455407.1\|171906_173190_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182613
NZ_CP051157.1\|WP_168456231.1\|170557_171487_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168455402.1\|161903_165002_+\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|223124	COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism].	6.02361e-179
NZ_CP051157.1\|WP_168455398.1\|154655_155366_+\|hypothetical-protein	gnl\|CDD\|168637	PRK06661, PRK06661, hypothetical protein; Provisional.	1.58831e-153
NZ_CP051157.1\|WP_168455408.1\|173272_174559_+\|amino-acid-permease	gnl\|CDD\|182613	PRK10644, PRK10644, arginine/agmatine antiporter.	3.28481e-66
NZ_CP051157.1\|WP_168456228.1\|153759_154380_-\|AAA-family-ATPase	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	0.00176122
NZ_CP051157.1\|WP_168455410.1\|175135_176164_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP051157.1\|WP_168455397.1\|153134_153758_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	4.8758e-38
NZ_CP051157.1\|WP_168456230.1\|167581_168277_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	1.38706e-105
NZ_CP051157.1\|WP_168456232.1\|176165_177227_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	9.13906e-159
NZ_CP051157.1\|WP_168455399.1\|155600_156218_+\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237680	PRK14341, PRK14341, lipoyl(octanoyl) transferase LipB.	1.19903e-131
NZ_CP051157.1\|WP_168455400.1\|157359_159267_-\|hypothetical-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	7.8926e-36
NZ_CP051157.1\|WP_168455406.1\|168746_170537_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	1.23168e-87
NZ_CP051157.1\|WP_168456229.1\|156226_157219_+\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	4.69608e-84
NZ_CP051157.1\|WP_168455401.1\|160373_161249_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	5.32068e-55
NZ_CP051157.1\|WP_168455407.1\|171906_173190_+\|amino-acid-permease	gnl\|CDD\|182613	PRK10644, PRK10644, arginine/agmatine antiporter.	5.56971e-59
NZ_CP051157.1\|WP_168456231.1\|170557_171487_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	1.72485e-161

>NZ_CP051157.1|WP_168455403.1|165090_165603_+|hypothetical-protein
MSILSILLFVSISLLNTSNKSVICAALFMGAALIVNLMTKFYGKRETICSLVICVMLCCILKWQNFSLMILTSYTAILVSLPLSTIVFEKLKFKFDFHITNFITLIIASVVDSSIVYVGLLHKFSAGKCLSIYIRDLAFKFSYASTLSLCLLVSTYLFHLVKRKHIKLFT
>NZ_CP051157.1|WP_168455402.1|161903_165002_+|phosphoribosylformylglycinamidine-synthase
MTNIRIEVANKYEEVSDRRVIDVYSIYISKELPQKLYEEICGLFYSKIIQDCRCYSYDKSLEEAQYDFIEPQAKWGLEISFLPGMTDNTGNTAKQIVREYLISRGYIDENIYIKAKNSKLILGKGNMPAEDDIKQEYNPITEYCMLIYKENGNCHWKYYSEPNTSPGVIPALDAGIYGSQCLGTGMTKDTGMTPSSNGAKSVDLNVSDQELEKISRDGIDGNGTLGLSLVAMKAIKDYFEKLGRNPYDIELESLAQTWSEHCKHNIFCSPIDEIKDGLYAHYIKRATREINSDICVSVFVDNAGGIIFDDDYLIIDKVETHNSPSALDPFGGAMTGVLGVNRDILGFGKGAAPIMNTYYFCFAKKAKGKFYRNKECTDEILPPKYVMKEVIHGVNVAGNCSGIPTQLGSIYFDDRFCGRPLVFAGSVGIIPRNINNIPSHIKKPKNGDKIVVIGGRVGRDGIHGATFSSKALSGNSPSTVVQIGDPITQKKLSNAIIEARDLGLYNAITDNGAGGLSSSIGEMGKDGFEVDLSKVLLKNDDMAPWEIWISESQERMTLAVPEENLPTFKQIMKKHDVEVSVIGKFNNSGKAVVECPKGTVIMDMETEFLHDGNPKMHLQTKPWTEKSNHSAVIPELSPVTQVAGTGIQQAESTNVLCQNSSRGKIEYEMDSSVKHWNDTITLKEMLSRPNICSKEFIVVQYDHEVQGSSVLKPLQGKGRVCGEAVISRPVLSSNKGVVKSHGFGSSYGEIDTYHMAACAIDIAIRNYVAVGGDINHLALLDNFCWCDAYNPERLWQLKRAAEACYDFATAFKTPFISGKDSMFNDFKGYDENGEKVMISAPPSLLISAIGIIGNIENAVSLDVKMPGDLIYVLGTTYNELGRSEYQLYSGIDNNNVPKVDAKSAKKLYERYGLAIKDGIIASAIAPNLGGLAVALAKSLIAGDLGAEIDLSLVSIGKIQNRNMINKIIMFSESQSRILVTIAPQNQQRFEELFEGIVFSYLGKVTEEKALNIKDILKVDLKDLGTSYHGTLI
>NZ_CP051157.1|WP_168455401.1|160373_161249_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MAFSKFLDPKNDVAFRRIFGTEKNKDILIHFLNDILGFTGKDEIKEIEFLSTIQDAEIASKKQSIVDVLCRDENGVQVIVEMQVAKTKGFEKRAQYYAAKAYSRQANKGDQYENLKEIIFIAIADCILFPDKSEYKSKHTIRDEDTNEHDLKDFYFTFIELPKFPKTKEDQLESIVEKWVYFFKYAEETSERELERIIGSDVIIKKAYEELNRFNWSEKEFIAYEQEIKRIRDEKAVLAQKLDDARDEGRQEGKIEVAKNLLKAGVSIDIIAKTTGLPRAEIAQLKEEVAS
>NZ_CP051157.1|WP_168455258.1|160039_160177_-|hypothetical-protein
MKIRLYLCVDENKKPSYFRFYTKMKTRLDLFAWMKIRNLIYIATL
>NZ_CP051157.1|WP_168455400.1|157359_159267_-|hypothetical-protein
MNEIQQRELNKQLFYALMQDNAEQAKKLAEEGANIFGAVNEGGMTILHIATFYGREGMVELLIRNGANIDKEDNEGRTSLYFAVIQGQEEMVKLLVRNGADIHKEDNEEHTSLYFAVIQGQEEMVKLLVRNGADIHKEDNEGHTLLYRAIVGGQEGIAELLIRNGADIDKKDNKGRTPLHRVTVQGQEEMVKLLVRNGANIDKEDNEGRTSLYFAVIQGQEEMVKLLVRNGADIHKEDNEGHTLLYRAAISGQEGMVKLLIRNGADIDKEDNEGHTLLYRAIVGGQEGIAELLIRNGADIDKKDNKGRTPLHRVTVQGQEGMVKLLIRNGADINKEDNEGITSLLYAIINGQEGMVKLLIRNGADVNKENNKGMTLLHFAALYGRKEIVRALIKNGANINAENSLGTSLNMAIEQGHIGVVELIVNHIAKLEIVGLYVSEENLQRKDEFINTSNERRNNYLQHFQNCQREAKKIEKENKPLYDFLRESNIDNLVSIWERNENVRSKFGNQESLQPEYAHILINKANEVKKEIFLHNHKPLIDALSSHYKCDFKTMTFAGIQTFFAVHRSDFRKELGSGGITLINFVDFQDIKERHIPTLKVQAFEEVVRNNAPSRNLDNPNAEQPQGLWSYCSIL
>NZ_CP051157.1|WP_168456229.1|156226_157219_+|LD-carboxypeptidase
MIIYILYFILVLCINTGVYAVDQVDIIAPSSKGKESDLTTIKEYVEALGFYPHIEEKIYSNDNPFYSNSDEFRANDLISALTDDSKIIWCIRGGTGASRLISYLERLSNDKKERIAQNKKILIGYSDITALHIYLQAKYDWQTLHGAMLEMIVNNSVSESSVEKLKELVLNKRDSIRFDNLKIIDNGIKLKNGRLESKIVGGNMTLVENSVGTAWQVNAKGKILFLEDIRVYPYAMERSLDHLKQAHIFDEVQAVIFGSFTDSGNDNLIEIVKERFAKSVNFPVFTIQGIGHGYTNDPLPFNTHTTIDIQDEKKGLFFMDVKLLHNLLSD
>NZ_CP051157.1|WP_168455399.1|155600_156218_+|lipoyl(octanoyl)-transferase-LipB
MTEWLVSNQFIDYNHAVKFMEAKIQRIYDSLSDELVWLLQHPPLYTAGISATDDDIVEKLFPIYKTGRGGKYTYHGPGQRIIYLMLDLRKRNKCDIRLYIRDLSNWIINVLKYFNIFGEFKEDRIGIWVNNNGIEEKIAAFGIRVRKWITYHGIALNVSPDLSHYRGIIPCGLKDYSVTSMKELGVEVSLSELDDILKKEFYKIF
>NZ_CP051157.1|WP_168455398.1|154655_155366_+|hypothetical-protein
MLLTKSKVKRDLAYAYQILSYLKLDDHTYTHLSVRSEDQKSFYIYPFGIRFNEVSENSLMKVSFDGDVIEGKEYQYNKTGYIIHGFIYQARKDIQAIFHLHTPSIVAVSSLKDGLLPINQWALHFYNKVSYHDYNSLALDNEEGKRLIADLKGNFVMLMRNHGSITCGRTIQEAMFYTYHLEQACKTQCLTLAMNRELSIPSEEICSKTVKDLLSFESNLGERDWHAWIRLIKNRS
>NZ_CP051157.1|WP_168456228.1|153759_154380_-|AAA-family-ATPase
MINVNTKKQITGVFVYIIGFLGSGKLSTAIELSNMIDALIVNSNLFNNAQVRSVYDNIFEYDQIPKEVQDRMYNIAQIMLQAIEAYPVHSKNYIFIDELMQNSDYNVRMYNSVAELSRRMNTKILPVMLRCDLHTLQKRIKLKRQRENRRATNISGIIEKFRTRNLFIPPNAMEIENSNMSVKEVAEEIKRQIYRLSQIDRVYVKG
>NZ_CP051157.1|WP_168455397.1|153134_153758_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MSILAIDTVGSGSSIAIVDHDGKCLVEHNSTSNSHAESFFQILDTLFSKHTYNYNKIDYLVVVVGPGSFTGIRVGISAAKGINLAINKPLYGVSALEVQAYAISLLCANSKKNIRAIIKNVKGFYTQLFDFSLLPLSHPTVALDISGSQCPDTGTTNNNCITYMDCNLSALNASHAGLLAQYKLENKQKFGEVEALYLNEPQYMKLL
>NZ_CP051157.1|WP_168455404.1|166424_167432_-|hypothetical-protein
MASTNSTFFDTDYPELRKAISDIIESIAQFPQEEKGKLFEALSEQVREMNLKDLGLAINDQGLQKEVNKELFIKLIEEALKGLTSENVDSKIIEEALKSVNQQAISNVINNNKGPLDNLVNYFKSASANKKIGIASTGIVLGVAFSPLIVLATLIALVAIGARYVGIGIGKAGEKIKEGAIEAGKAVKSSYKDLIDKLPEVQRRENNFEKLISNLMEKNLEADEGERTMLSNEIKIIKMLQNQKQLAAIGQLIREDKAGLLHNLMSKGTSTHEEDMEKLVDFMSEVQPAIMAIGENDIKEVERKINEKAQEMKPKFKLDDPNSEKAADPEEHLSP
>NZ_CP051157.1|WP_168456230.1|167581_168277_+|isoprenoid-biosynthesis-glyoxalase-ElbB
MGGKNLKAAVVLSGCGHLDGAEVREAVLSLLVLDQQEVEVTCFAPDINVTQVINHKTKKEAVEEKRNVLVEAARIARGEIYDLKEAKAEDFNMLVVPGGYGVARNLSDLAEGKDVVTVIPEFERLVSEFFVAKKPIGAICISPAIIVFILSNKIGKEKNRIKVTIGDDREKLIEKLGGEHIKCDTGLSIEDEEHSVFSCSAYMRSDENTYSVYQGIKHMIDGMVKKINKKN
>NZ_CP051157.1|WP_168455405.1|168395_168743_+|hypothetical-protein
MSDDLWGFLMDIPSGGYTIDSSYCTGDGCNHYTGNIEPKDIWKFDLISSDGKPAKKFEARVTDLFEPRICLSVDDSDKKVDFDISPENCNVTKDGLLCVDGNNQDHKLRLLIKKY
>NZ_CP051157.1|WP_168455406.1|168746_170537_-|penicillin-binding-protein-2
MQALLKNKLRSLYFIVPLFIFYIIIIFRIFSLTFDQSSALEDLKKSTKACRQPDILDRNGVVIATNVPTTSLYIDSTKVKNPESIAVQLSSTLDDLEYEDLYKILTSKRKFAWIKRHLTPKELLTIKNAGVPGVNFHNDVKRIYPHSNLFSHVLGYTDIDGNGIAGIETYVSRNRQPSITQITNTHLHESCNLKTFPAQQSPIQQTMSSQCLTLGSRYGNTNELCGKQQTPETYVKNNTHNEIAHKAGFQCHSTGMIPDGCVQLSLDLRVQSVVHEELANAVSKFQALGGVGIVLNVKNSEIIAMVSLPDFNPNLQNKAKDTQKFNRASLGVYEMGSIFKFFTIAAALDANVVKTSDLYDVSKPITIGEYKIRDLHKFKTPKITVRDIFVQSSNIGAAKVAAKLGIEKQVEYFKTMKLFSPLKIEIPEKSAPIIPNRWSESTLITASYGYGIAVTPMHIAQTAAALINNGIFHNATLVLNKRSIGEQIVTRSTSREIKKLLRATVTDGTGRKANIKAYSIGGKTGSAEKVVNGKYSKDLNIASFIGVLTILDPRYIVLIIIDEPQGMYHTGGMIATPVARNIMNKIAPILSVTPEM
>NZ_CP051157.1|WP_168456231.1|170557_171487_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MEIILAEPRGFCAGVKRAVDILAITLEKYKNKRKVYVLHEIVHNKYIVEDFKKQGVVFVNSIEDIKDDEGILIFSAHGVSKSIEEKAKRKGIQVIDATCPLVSKVHKEAKRYENNGKELILIGHENHPEIKGIRGRVDNPITLVQTLEDVHDLKVKDPENLSYVTQTTLSVDDTREIIAALKRRFPSITGPDLKDICYATQNRQNAVKKLTEIVDIVLIVGSKNSSNSNRLLDLCTARGKKAYLIDHYGCISKSWLQGVKKIGITAGASAPDILVDELINYLKADMNVKVSVMLGGITENVQFKVPNLV
>NZ_CP051157.1|WP_168455407.1|171906_173190_+|amino-acid-permease
MSNKIGFLAVLALVISSQIGSGIFMLPISLAPYGAYSLISWVISGFGAISLALVFALLCAKFPETGGPHVYVKHTFGSTGAFFVGWTYWASSWVGSTAVTVASIGYLAPLFHNDMQNIRLFLEITLILAIMLINLRGITTVGHVELILMIIKITILFAIPIAALFFFDRNNFIVSEEVSNLTISQIFARSSLLTLWCFIGLETVTASAGSVENPSKTVPRAIVLGTFSVAIIYFINNLAIMGLINGNHLANSKAPYVDAIKIVLPGSWYLIVSIIAFIVSTSSLNAWFLADGQVALGLAKDKLMPQLFAKRNKHDAPFCGMIINTLGILVLLVLTSNKNFAEQVTSIIDVSVVSYLFVYLACSFAFLKITVQEKTYCKFLIGSVAVLFCCWIIYETPISTLLMSSLFPLSSTLIYLLWYHKATFLKA
>NZ_CP051157.1|WP_168455408.1|173272_174559_+|amino-acid-permease
MSNKIGFLTVFALVISSQIGSGVFMLPISLAPYGAYSLISWVISGAGAVSLALVFATLCAKFPETGGPHVYAKHAFGPTAAFFVGWTYWIISWVSTTALIVVGVGYLTPFFHEDIQSMRLLLELLLFTVITLVNLRGIATAGRIEFLLTVIKISVLLAIPVAALFFFDRNNFIISEEISSLTASQILARSTLLTLWCFVGVELATAPAGSVDNPTKTIPRAVVLGTICVAVIYFINNFAIMGLINGNDLANSRAPYVDAIKIMLSGNWHLIISVIASIFCVGSLNAWVLSSGQVAFGLAGDRLMPQFFAKRNKHGSPFWGIITSSVGTAVLLILTSSNNFAQQITSIIDFSVVSFLFVYLACSLAFLKVVVKERNYYKLLIGSIATIFCCWVILETPVNTLLISSLFTASGIPLYLFWYRRASVQRTE
>NZ_CP051157.1|WP_168455409.1|174580_174997_-|hypothetical-protein
MSKEYNETKLKPAPSISQESEKINGSRVQNILSQKKYKINFDDKKYAVKVIKTQFAKAEQRPSKLRDFLKSIPMIGGLLARIFAPEEETYKKLRLQAGHPSEAKSKTCIDNKHTEEVGSRLKKSNVEQVDKEEKNLGP
>NZ_CP051157.1|WP_168455410.1|175135_176164_+|aspartate-semialdehyde-dehydrogenase
MGYRIAVVGATGRVGREVLGILAEFQDEKKISIDFVTAFASKKSKGKKVSFGDEELTVSCLEGYNFIGIDIAIFCAGYSVSEKYVPVATKVGCIVIDNSSHFRMKENVPLIIPEVNKEKISEYKNHNIISNPNCTIIQMLLVLHLLHQRAKIKRIVASTYQSTSGAGKAAMDELYNQTKKIFMNETKKPEIFPKQIAFNCIPHIGEFMEDGSTKEEWKMQEETKKILGEEIKVTATCVRVPVFIGHAIAANVEFDQPIIEEQAREVLREAEDNGILMYDRREDGEYTTQIDVVQEDAVYVSRIRQDNTVEHGLNMWIVADNLRKGAALNIVQILEILVREHL
>NZ_CP051157.1|WP_168456232.1|176165_177227_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MLSKKVIGIIGSGQLGKMTAIAATKLGKNTHIFASAEGDPACSVADDLTIADLSDKKALESFARSVDLVTIESENIPCDAVDIVSRHVDFYPGKRALYIAQNRLREKDFIRSLGIKTADYKNIQNYDELLESNRTFGYPTRLKTTEMGYDGKGQYVINNDSEAKQFVSFDWNTQYILEASIDLMKEISIVVARDRNGKMAFFPIAENHHVDGILDTSTVPVKIDSKLTQEVQQVARKIADVLDVVGIMAIEFFITEDNELLVNELAPRPHNSCHWSLDACNISQFEQLVRVICGLPMQEVMLRFPCMTKNIIGSNIYDSHGYLSDKKASLTIYGKKEIRDKRKMGHVNIDLSC

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Crispr_ID: NZ_CP051157_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_3

235044-235135

Orphan

Consensus_repeat	Method
CAAAATCGAAAATAAGAGGTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_3

>merge|NZ_CP051157|3|235044-235135|CRISPRCasFinder
CAAAATCGAAAATAAGAGGTGTTATTTTCATCTATGCAAATAAGGTAAAGGCTTATTTTCATTTTTATACAAAATCGAAAATAAGAGGTTTT

>NZ_CP051157|3|3|235044-235135|CRISPRCasFinder
CAAAATCGAAAATAAGAGGTGTT	ATTTTCATCTATGCAAATAAGGTAAAGGCTTATTTTCATTTTTATA
CAAAATCGAAAATAAGAGGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455444.1\|229608_230091_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP051157.1\|WP_168455457.1\|244365_245652_-\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|237441
NZ_CP051157.1\|WP_168455453.1\|239258_240578_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|183594
NZ_CP051157.1\|WP_168455450.1\|235196_235367_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455259.1\|238648_238840_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455442.1\|227402_228788_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240271
NZ_CP051157.1\|WP_168455445.1\|230150_230627_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099
NZ_CP051157.1\|WP_168456241.1\|224810_226709_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP051157.1\|WP_168455451.1\|235566_236757_-\|thiol:disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|226685
NZ_CP051157.1\|WP_168455446.1\|230628_231252_+\|SURF1-family-protein	unknown	unknown	gnl\|CDD\|119401
NZ_CP051157.1\|WP_168455443.1\|228958_229597_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|372595
NZ_CP051157.1\|WP_168455458.1\|246162_246930_+\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_CP051157.1\|WP_168455447.1\|231338_231872_-\|phospholipase-D-family-protein	unknown	unknown	gnl\|CDD\|197267
NZ_CP051157.1\|WP_168455449.1\|233403_234867_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|376582
NZ_CP051157.1\|WP_168455441.1\|222130_224770_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223029
NZ_CP051157.1\|WP_168455456.1\|243799_244012_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455452.1\|237135_238467_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_CP051157.1\|WP_168455455.1\|241737_243786_-\|NADH-quinone-oxidoreductase-subunit-G	unknown	unknown	gnl\|CDD\|236387
NZ_CP051157.1\|WP_168455448.1\|231912_233400_-\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NZ_CP051157.1\|WP_168455454.1\|240728_241754_-\|NADH-quinone-oxidoreductase-subunit-NuoH	unknown	unknown	gnl\|CDD\|235692

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168455444.1\|229608_230091_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	5.61624e-09
NZ_CP051157.1\|WP_168455457.1\|244365_245652_-\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|237441	PRK13596, PRK13596, NADH-quinone oxidoreductase subunit NuoF.	0
NZ_CP051157.1\|WP_168455453.1\|239258_240578_-\|glutamate--tRNA-ligase	gnl\|CDD\|183594	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.	0
NZ_CP051157.1\|WP_168455451.1\|235566_236757_-\|thiol:disulfide-interchange-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	6.38043e-72
NZ_CP051157.1\|WP_168455445.1\|230150_230627_+\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	1.00356e-48
NZ_CP051157.1\|WP_168456241.1\|224810_226709_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP051157.1\|WP_168455442.1\|227402_228788_-\|hypothetical-protein	gnl\|CDD\|240271	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.	0.0089802
NZ_CP051157.1\|WP_168455446.1\|230628_231252_+\|SURF1-family-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	3.37379e-35
NZ_CP051157.1\|WP_168455443.1\|228958_229597_+\|HAD-IA-family-hydrolase	gnl\|CDD\|372595	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.	3.46215e-34
NZ_CP051157.1\|WP_168455458.1\|246162_246930_+\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	9.08376e-59
NZ_CP051157.1\|WP_168455447.1\|231338_231872_-\|phospholipase-D-family-protein	gnl\|CDD\|197267	cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.	6.80054e-71
NZ_CP051157.1\|WP_168455449.1\|233403_234867_-\|AAA-family-ATPase	gnl\|CDD\|376582	pfam01637, ATPase_2, ATPase domain predominantly from Archaea. This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.	2.06636e-08
NZ_CP051157.1\|WP_168455441.1\|222130_224770_-\|hypothetical-protein	gnl\|CDD\|223029	PHA03264, PHA03264, envelope glycoprotein D; Provisional.	1.14207e-06
NZ_CP051157.1\|WP_168455452.1\|237135_238467_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NZ_CP051157.1\|WP_168455455.1\|241737_243786_-\|NADH-quinone-oxidoreductase-subunit-G	gnl\|CDD\|236387	PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.	0
NZ_CP051157.1\|WP_168455448.1\|231912_233400_-\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NZ_CP051157.1\|WP_168455454.1\|240728_241754_-\|NADH-quinone-oxidoreductase-subunit-NuoH	gnl\|CDD\|235692	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH.	3.42619e-145

>NZ_CP051157.1|WP_168455449.1|233403_234867_-|AAA-family-ATPase
MNEPIIGRKKEIAILQDKLLSQSAEFIAVYGRRRVGKTYLIKQFFSKRADVLFEQTGLNDGTMQEQLKIFTHSLSNAFYKGARMALPEDWMDALQQLTLAIDNTHENEQIVLFFDELPWLATKKSGFLKALEYFWNTRWTYRKKLILVVCGSAASWMLENIIYTKGGLHNRITARISLQPFNLRETEAYLKYRGVNLNRQQILQLYMAMGGVPHYLKAVQKGLSAAQNIGLICFQKNGLLFDEFNMLFHSLYEEPEVYLNIIRAIAKKSRISRRELVDATKISEGGYLTARLRSLEEAGFISSFLPDNHKRKGIHYKVIDEYTLFYFSWIEEFRKTTRGVVTDGSRYWESVMNKPTWFAWVGKAFEEVCFKHASAIKRKLEIEYILTKCYDWQYQPGKYSKESGAQIDLVLDREDGCTMCYEIKYSDKPYIVTKKFVEKLKRKEAVYREKTKSKKQIFWVLIAANGVSENRYLKDTIHHVITLEDLF
>NZ_CP051157.1|WP_168455448.1|231912_233400_-|UbiD-family-decarboxylase
MYNNLHDFISALEEKKDLIRIKEEVSTVLEMTEIHRRVLSSKGPAIIFENVVTENGKNSIPVLVNLFGTIERIALGLGINPGELRDLGKLLAFLQSPEPPKNLKDAMKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQTCWPNEPAPLITWPIVVTKGPTKDKQDNFNLGIYRMQVIDKKTTLMRWLAHRGGAGHHKRWKEKGQSMKFPAAAVIGSDPATLIAAVTPVPETLSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDSYRDEGPYGDHTGYYNSVEQFPEFNITAITMRKNPIYLSTFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKSYPGHAKRVVMGILSFLKQFLYTKFIIVVDDDINVRDWKEVMWAISTRMDPVRDTIMIENAPIDYLDFASPESGLGGKMGFDATNKIPPETKREWGRKIEMSEEIVKKVTEKWKGYGLTDD
>NZ_CP051157.1|WP_168455447.1|231338_231872_-|phospholipase-D-family-protein
MRLLYLLFLLACFSLYYYAGSIFSSCPKATVCFSPEEDCVVPIISEIDRSKESILVQEYTFTLEAVAKALINAKKRGIDVEVILDKSQLHSKYSVINELFASGIPVWIDNKPKIAHNKVIIVDNQKVITGSFNLSKTAEKGNAENLLIIKDYPELVQQYVNNWEIRKLQSYKYMKAK
>NZ_CP051157.1|WP_168455446.1|230628_231252_+|SURF1-family-protein
MLKKAVFVLIIPCLLLFSLGLWQLFRLSWKNSIIKSMSLPVVHLLPDDDLTKFNYRHVKIDGILSDIELYVFAGQRGYYILSPMLLTTGHYMLVHKGIVGEKKEEKAKIERVAASGVLYCDSSKSKSWLIKNDTTLNTWFTLSAEEISNELGIELEKCMLWQEGFSNKLTVQPMKHLEYAITWFALSVIWLITCIVYYRQSKCHPSS
>NZ_CP051157.1|WP_168455445.1|230150_230627_+|bacterioferritin
MSKEIVKHLNTLLTNELTSVRQYLLHFAILKDNGINKLAEKMKSELNEELGHANELAERILLLKGVPNFQDTNEISKYDGQFTKGTIRKILEDNLKLEKEGLKDYKEAISVAEKEKDFVSVMLLEELLKNEEEHLHWIEEQINLIELIGVENYLKTQI
>NZ_CP051157.1|WP_168455444.1|229608_230091_+|RDD-family-protein
MEIASIKRRFCAYLIDVAILLIPNLLIILLLKNFPLILHLSYMCVNCSYFTYFISSAAQATPGQQLMNIHTIRLDGSKIDLSLAFDRSISQFFLHLLKNVIIILIGLFQEQNILVNILNMLVVITLLLALCWYLVACFSQKKQTYHDMLFGTIVVKGAIK
>NZ_CP051157.1|WP_168455443.1|228958_229597_+|HAD-IA-family-hydrolase
MKNSSLAVVFDWDNTLVDTQDNISNAIKYTLDSMGCSNKTADRNSHESRKSYMVSLFGDRWKKANQIYQQYLDNALLQNITLNQGVEKMLQTLKSHNIYLAIVSNKKNTNLREEVAYFKLDSYFERVVGSSDTAEDKPSATPLLFALEESILPINKENVFFVGDSITDILCAQNANCLPIVYGQSISGYEDLLCFQHFDKLTDFIIKYLKDR
>NZ_CP051157.1|WP_168455442.1|227402_228788_-|hypothetical-protein
MTEAKNTSQENVEKKFKDVFGRSPGAFPEDTSLEEKVNYIAKGTKALKAVKSEDLENKIKNIAKLDKELKKQQRQNEEEVDKLRRSAQELRKEFGTSKKSRSGDNDKSPQEAGRVTQTTEASTQTETQPPRVEELRNNPEFQEAASNLKETTAEGEKFGQSEQKEAFEAYIQTDTQPPISSEAQTSPELESQAVSPIVSKNSAELAETLGKTPAKDKSFKRSGHKTSEASVQMDEAPYEHKAGFSLGRDLKREKSNNKKLGQDEKDNVPQENQKEEGLFSLLKRFVKKILEKLLGEDKKGIENTNNMKGAAQKNTLNNEMQQKSVNQSSYININGKEFNLEPGKSFNYQDKALNISIIYNSSETEQNLQQDATSPNVAHTINLNINGREYNIQPGESFKHTSPGLEISVVNGHQQGKHFDKVLSQDQSISEGLKQVTELKNPAITPVNTPKVNEVNTGRER
>NZ_CP051157.1|WP_168456241.1|224810_226709_-|molecular-chaperone-HtpG
MHDVQESENLKFDAEVGKVLNIVIHSLYTNKDIFLRELISNASDACDKLRYESQLNPNLLDSSGELKITIGANKDKNELCITDNGIGMNRQDLIDNLGTIASSGTQKFLEAIKNSKDSSQTVELIGKFGVGFYSSFMVASEVIVESRKAGEEESWVWKSKGDGEYSISKLDDQIPRGTKITLIMRPEESEFLDKFRIENIVTTYSDHINFPVEFIDEEGKSEKLNSKAAIWTKPKNDVSQEEHNDFFRSVAHVGGEPWMILHNKNEGAIEYTNLLYVPSIKPFDLFHPDRRCSVKLYVNKVFITEDNVQVIPQYLRFLKGIVDSPDLPLNISRETLQNNRVVEQIRKSLTKRVISELGKKAKENLEEYTKFWANFGAVLKEGLCEAMPTDEREALLSICRFHSTSDDKLVSIDDYISRMKSEQEYIYYLTGNSLDSVKNSPQLEGFVSKGLEVLLFVDPVDDFWTSVIHEYKDQKFKSVTRADVDLEKFSSEKKDEENKSDEEQSEENTDSILEYFTKVLGNAVKSVKISKKLTDSPVCLAVDEGAMDLRMERFLREQKQLNYRTPKVLEINTKHPVIKSIMKSHAEDGENPTLEDMVHLLFYQACIVEGEEMDDASLFAKKLNNLLGKVVI
>NZ_CP051157.1|WP_168455441.1|222130_224770_-|hypothetical-protein
MTLKDRTIGGGDQQININASVYCEELKGSFSEEIEQGRTLKFDKKVQVQDIPLIGKKGRTKLFKAENEKRRNTCAVANMNAENRVNIQHDPGVVQSNCQNLSGDEDWVVVNGEDQPNQSPSTTTTLEFQLTQSLLSQVRVNEDNRNANSGRQAQLDLSRMNFIINGKTIDKKCILELYDKNNHLIQNGNEDYRPFAKQVFTGMFEYVKAEIPNDHILEELITNCNQAGYEFTMYGQIQPILVQYNLAPTIPEKTISICCNSVDSASVEYSDVIVVKNPDLDQFEQYESSSKLEFTLKFQNGEVEYENGKVTLNIPEQLKNYKADGKSLLDNVKEHFTDADNAVVESLIANIGDGPKSFIIDLPTEVASSVDNSFDIIPENVVFDLGDMAKLVEEAVDNKDVNALNTYIEVVQAGITHVSPREGLLIVEKVLEIVSQFVKEQGEAWSTYYAMPVVREVYAAKKYAEGYISQEDYGRVKELEKVLRRTKSILSNNENGKNNDQSSSQKNPKPKSIDNQQQQKNVVDKRKNIMYKGEASKQEPIGSNREGGKKVNGSYGSRLPNTQEQQKVPEAPILKQTGITQSEGASSSMQGPQNKSTTVPPVGNDKEKQIPIQSTESKGNENQELAPDQPTEQTMLQMGDAELKSKGDQQDSPSSKSSVGGSNGSASSFVKLPESDTENSNGEYVKVSPLPVSGSGSSLENIDNEDDNKNPQPAPVPLTPAPGPTPVPLVPKELAPVLPEPIPLVPESTPVPPEPGPEPTSVPPAPMPAPPMSSLSNEDDVQSNSRQPCTTGKNDPAPQGTKASKRPVVAASALAIAGIALGVAIAVYLQMLAAGIVVGACCLVAATVIYYCASKSSVENSKVEERCKDKTSKGIVIGS
>NZ_CP051157.1|WP_168455450.1|235196_235367_+|hypothetical-protein
MDPSVRYSDDIIRLLGCIVEATGMTSTTLSFQRVTLVHFLQVSFQCLTLESRKVCL
>NZ_CP051157.1|WP_168455451.1|235566_236757_-|thiol:disulfide-interchange-protein
MEPIINLVFAFIGGVILNFMPCVLPVLSLKVVAMINDASNSFKLRLNGITYTLGVLTTMLILSIALLTLRNMGCAVGWGFHMQSPVFILVLVYVMFAVGLCFCGLYEIPFIFSYSGKANSSFFTGVLTTLVATPCVTPFMASAICFALTQSSIFIFISIFLFLGLGISFPYLIISFFPNKLKFLPKPGKWMETFKHFLSFPIFLSTIWLFWVLIKESNMEMVLPVLVGLLSFTFSIWIWSFTSYVKLLTKSILFILLLLLNLLPFVLSESVQRVIFQENLQAERINFSQERLTSLIDDGQSVLVTISADWCLYCKFLNQVVLKSDPVQQLLKAHNVVCMEGDWTNRDPYIANYMRKFKGDGLLGVPFFGLHTPNNREGKFFRDISKEILESMLNTN
>NZ_CP051157.1|WP_168455452.1|237135_238467_+|dihydroorotase
MAQTWDLLQTGQKENYKIAYINARIIDPETKLDIKGSLLTEGNKIIDFGESLFSNGVSSGIDKTIDCKGLVLMPGLVDIHVHFREPGQEHKETIHTGSKSAAAGGVTTVVCQPNTVPAIDSVILAKYLKYRALETSHVNVEFYAKITTAEGKLTEMALLKEAGAVGFTDDGMPVMNPMIMRQALLYSSMLNVPIAQHAEDLNLSAGGAINEGKISEELGVKGILSASESVMVSRDILLMKDIENVHYHILHVSAKDSLDAIKYAKDLGLNVTCEVTPHHFTLTEDIVKQHGAIAKMNPPLRTEEDRLAMVEGLKMGVIDCIATDHAPHDRNSKGLPLENAAFGIVGLETMLPLSLELYHSGQMSLFDVLAKLTYKPADIIHVPRGRIQKNLAADLILADLDHEWEIKIDTFASKSKNSPFDGRKIKGQVVRTVVSGKTVYLQE
>NZ_CP051157.1|WP_168455259.1|238648_238840_+|hypothetical-protein
MKKRMDPSIKYWDDKKRSYLNDIIRLLGCIVEATGMTSTALSFQRVTLESRFFWTGSYGQAIG
>NZ_CP051157.1|WP_168455453.1|239258_240578_-|glutamate--tRNA-ligase
MLTRFAPSPTGYLHVGNIRTALICWMYTRSKNGKFLLRFDDTDLQRSDAKYVNSIMQDLRWVSIDWDSNFKQSERFKRYNEVFLQLVKEGYIYACYETREELDIKRKLQLKQGLPPVYDRGALLLTGQEKAHYEQEGRKPHFRFKLNRKEIVKWNDEVKGEVNIATNHISDPVVRREDGLYTYMLPSVIDDIDFNITHIVRGEDHLTNTVAQVQMIQALKAKVPIFAHLSLLHFDDGKISKRKGGLDIRSIKEDDIEPMTLTSYLAKLGTSDPIEAHIDMKSLVDSFDIKKFSSASTQFSLSEVYKLNSKVLQQMPFEVMNGRLSQIGVNSSEFWYFIRSNIERFSEVAKWWQICKSDIEPATLDKEFIKIALSALPQGECNENTLSEWVKVIRQTLDIKAKDLFMQLRLALTGTKTGPELAKLLVFIGRENIVARLKK
>NZ_CP051157.1|WP_168455454.1|240728_241754_-|NADH-quinone-oxidoreductase-subunit-NuoH
MNVLVNILFILVPLLLSVAYLVYFERKVIGAIQLRHGPSVVGPFGLLQPFADAIKLLIKEPIIPFRANTILFIMAPMLTFILALIAWAVIPFSAEVIIENGQQIVIPKVMANINVGVLYVLAVSSLGIYGIIIAGWSSNSNYAFLGSIRSAAQMISYEVSIGLIVATIVITTGTLNLGEMVVIKHNMPFWVDILLMPMAVVFFISLLAETNRHPFDLPEAEAELVSGYNVEYSSMPFALFFLGEYANMILASAMLTIFFLGGWYPPIELNLLYKIPGLIWFVLKMVLLLFVFVWVRATIPRYRYDQLMRLGWKVFLPISVLWVILISGVLLFTGNLPGLEL
>NZ_CP051157.1|WP_168455455.1|241737_243786_-|NADH-quinone-oxidoreductase-subunit-G
MVKVNINSKEYEVGPGLTIIQACEAVGVEIPRFCYHERLAIAGNCRMCLVEVEGGPPKPVASCAIPVAEGMIIHTDTPKVKKAREGVLEFLLINHPLDCPICDQGGECDLQDITMAYGKGTSRLDEHKRAVPKKRFGPIIETAMNRCIHCTRCVRFLSDVAGTNELGGIGRGENVEISTYIKRHISSELSGNIIDLCPVGALTSKPYSFKARPWELSHCETIDVLDAVGSAIRVDYRGMEVMRILPRLNEEINEEWISDKTRFAYDGLRVQRLDQPYIKKDGKLVPANWNEALTVAAKKLKSTKPNRIAAIAGDLADCESMLLLKEMMQKLGSANIDCRQDRATLIPNNRGSYVFNTTIEGIENADLCLLINTNPKTEAPIINARIRKRYLQGNFPIATVGPDIEYLYHVEKLGNNPNVLNEIARGNHKFCKLLSAAQNPMLIIGQDTLTRDDSESILTLVSTIAEKFNMIRDDWNGFNVLHKAAARVGGLDIGFVPQKGGKDINQILEQAESGEIEIVYLLGADEIDTSKLGNTFVIYQGHHGDRGAHVADIVLPGAAYTEKYATYVNTEGRAQRTNLAVLPPGEAKEDWLIVKNLSQYLGLSLPYDSLFDVRKKLDAIGPQFKNVDQVVKNKWVSISSGEVGLSDKSFTLKGCSFYMTDPISRASKIMADCTKAFYECAS
>NZ_CP051157.1|WP_168455456.1|243799_244012_-|hypothetical-protein
MAAGGKAKTASKNNPTQRKKAEQKMYKDRPVKPVRYIDRDSRMNYMSAQYDNGDLVEDEVSGNPIKWEAV
>NZ_CP051157.1|WP_168455457.1|244365_245652_-|NADH-quinone-oxidoreductase-subunit-NuoF
MLKAQNKIFTNLDGKETPLLEGAKKRGNWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGFSTGLKWSFMPKNPSKEQPVYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASAAYIYIRGEFYNEYLILKAALEEAYQKGLIGQNACKSGYNLDVFIHRGAGAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAVVPDILRRGGEWFASLGKPNNTGTKVFCISGHVNNPCNVEEELGISLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICDTIEMDFDSLRAVQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMWRIMKRMVTGEIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHLIEERAQLSRSCAQTV
>NZ_CP051157.1|WP_168455458.1|246162_246930_+|NAD(+)-diphosphatase
MKKFCEMTYQKALFFCKDGLLLDKSTGTPFINFGQAMKYFNAENIIKNDYLIIVQGVLLPKAPFTIANPKSCLRQVTGTEQGHLLKAIHLVSWDSQTKYCSICGGILSAIEKAIEKKCSLCHRLFFPHTYLAVMILVYCRDELLLARSPHFTPGVYSALAGFVGVGESAEEAAIREVKEEVGLDIYNLQYFGIQTWPFPASFMIAFTAECDDKKITIDYNELEDARWFSKDNLPDLPLMPSISRSLIDTFLGYKT

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Crispr_ID: NZ_CP051157_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_4

301005-301134

Orphan

Consensus_repeat	Method
TATTGCTTCTACAACAGGTTTTTCAGCAGCTTTAGTTTTGAGGTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_4

>merge|NZ_CP051157|4|301005-301134|CRISPRCasFinder
TATTGCTTCTACAACAGGTTTTTCAGCAGCTTTAGTTTTGAGGTCTGATTCCTTGACGAATTTAGGGAAATCATTAGAAGCTATTATTGCTTCTACAACAGGTTTTTCAGCAGCTTTAGTTTTGAGGTCT

>NZ_CP051157|4|4|301005-301134|CRISPRCasFinder
TATTGCTTCTACAACAGGTTTTTCAGCAGCTTTAGTTTTGAGGTCT	GATTCCTTGACGAATTTAGGGAAATCATTAGAAGCTAT
TATTGCTTCTACAACAGGTTTTTCAGCAGCTTTAGTTTTGAGGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455486.1\|294504_295698_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP051157.1\|WP_168455497.1\|305135_305804_+\|conjugal-transfer-protein-TraJ	unknown	unknown	gnl\|CDD\|226259
NZ_CP051157.1\|WP_168455502.1\|309785_310232_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455501.1\|308357_309803_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NZ_CP051157.1\|WP_168456246.1\|292982_294026_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|238368
NZ_CP051157.1\|WP_168455487.1\|295727_296045_+\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NZ_CP051157.1\|WP_168455499.1\|306386_307313_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP051157.1\|WP_168455500.1\|307450_308197_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|182787
NZ_CP051157.1\|WP_168455495.1\|303397_304237_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|273213
NZ_CP051157.1\|WP_168455498.1\|306043_306397_-\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-C	unknown	unknown	gnl\|CDD\|178810
NZ_CP051157.1\|WP_168455488.1\|296098_296602_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456247.1\|297074_298283_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP051157.1\|WP_168455493.1\|301702_301957_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455485.1\|291787_292603_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP051157.1\|WP_168456248.1\|299860_299917_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455489.1\|298341_299619_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP051157.1\|WP_168455490.1\|300009_300297_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_CP051157.1\|WP_168455494.1\|302792_303389_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|376519
NZ_CP051157.1\|WP_168455496.1\|304295_305090_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455491.1\|300369_300531_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168455486.1\|294504_295698_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP051157.1\|WP_168455497.1\|305135_305804_+\|conjugal-transfer-protein-TraJ	gnl\|CDD\|226259	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion].	6.85848e-12
NZ_CP051157.1\|WP_168456246.1\|292982_294026_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|238368	cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).	4.64736e-142
NZ_CP051157.1\|WP_168455495.1\|303397_304237_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	6.49459e-38
NZ_CP051157.1\|WP_168455500.1\|307450_308197_-\|signal-peptidase-I	gnl\|CDD\|182787	PRK10861, PRK10861, signal peptidase I.	1.38401e-43
NZ_CP051157.1\|WP_168455487.1\|295727_296045_+\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	2.91155e-29
NZ_CP051157.1\|WP_168456247.1\|297074_298283_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	8.22308e-15
NZ_CP051157.1\|WP_168455498.1\|306043_306397_-\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-C	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.14552e-13
NZ_CP051157.1\|WP_168455485.1\|291787_292603_-\|CBS-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	7.28541e-49
NZ_CP051157.1\|WP_168455499.1\|306386_307313_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.39498e-128
NZ_CP051157.1\|WP_168455489.1\|298341_299619_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP051157.1\|WP_168455501.1\|308357_309803_+\|DnaJ-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	4.12408e-24
NZ_CP051157.1\|WP_168455494.1\|302792_303389_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	7.57583e-53
NZ_CP051157.1\|WP_168455490.1\|300009_300297_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	1.86586e-49

>NZ_CP051157.1|WP_168455491.1|300369_300531_-|hypothetical-protein
MSLQLVIPAPHAGISIFLRPKPSLVPSVTHWDPFFFSLDSSVTRWNNRAVDVI
>NZ_CP051157.1|WP_168455490.1|300009_300297_+|GIY-YIG-nuclease-family-protein
MKSYYVYILTSERNGTLYIGITSNLIKRIWEHKNKVVSSFTSKYNVCKLVYYEEFQDVNLAISREKLLKSWQRKWKINLIEQTNQEWKDLYDEII
>NZ_CP051157.1|WP_168456248.1|299860_299917_+|hypothetical-protein
MPVSEHWDDNVGATGMTQ
>NZ_CP051157.1|WP_168455489.1|298341_299619_+|serine-hydroxymethyltransferase
MTSVSEKVCSPKNDLKSFDNEIYQSIEKEFQRQRSQLQLIASENFASRAVMEAQGSFLTNKYAEGYPGKRYYCGCEYVDEIENFAIERLCRLFGVKFANVQPHSGSQANQAVFASLLTPGDTILGLSLSCGGHLTHGAAPSLSGKWFKSIQYTVDKDTYLLDMDEVEKLALEHKPKLIIAGASAYPRKMDFKRFREIADKVGAYLLADIAHYAGLIAAGEYPSPAEYAHVITSTTHKTLRGPRGGVIITNDEALHKKIQSAVFPGLQGGPLMHVIAAKAVAFKEALAPEFKVYSKKVVENAKVLAQALQEYGLNIITGGTDSHIVLIDLRPQKLTGKDVVDSLERAGITCNKNSVPFDVEKPTITSGLRFGTAAETTRGLEAKNFKEIAGLINEVVQGLINRNSLSVERAVKNKVEKICNDFPIY
>NZ_CP051157.1|WP_168456247.1|297074_298283_+|MFS-transporter
MQRSFLIWLLASLFYAYQYILRVIPNIIAPELITKFNIGIADVGQFSGLYYVGYTLAHIPVGLFLDRSGPKLVLPICIVLTFAGTLPLICFDEWYLSILGRIIVGVGSSASAIGIFKVASMCFPKEKSAKMASLSIIIGLLGAIYGGLPLDFLLDKFGWDYVIYTFSAFGCLLALSLFLITPGNDARENVDSNILQDLKTVLCNKYIILISFFGGLMVGPLEGFADGWARTFLCEVYQMTEDLASSLSSFVFIGFGAGAFFLAYLLEKYPNKHYEVIIACSLAMIASFLLLFTQKGGLYVVLPTLLVIGFASGYQVITIYKAISYVSTNLVGLATAVSNMIVMVFGYFFHVGIAKIVDLYWDKTVVQGNPVYGAKLLIEAMSIIPVSLLLAVFGFMWLRKRS
>NZ_CP051157.1|WP_168455488.1|296098_296602_-|hypothetical-protein
MSTTDNTLQNYITKYTEQAFAAHTGNRYDKLYRELLSSVEGIIKLTVNQAKRYDKDLENLYNDPRFNKKFIRTFAKHQILEFLDTHPKKKEVVTEFNSEHHINESDLKILEEGKDLIDKINDINLTQQNEKGEELNIKTVVAQSIGRPSSQVGESKATSVNICNLIK
>NZ_CP051157.1|WP_168455487.1|295727_296045_+|multidrug-efflux-SMR-transporter
MSWIYLLLAGLLEIAWTTALKYSNGFTRVIPVIIVLICGFLSLYLLSLAIKYIPLGTSYAVWTGIGSMGAAVIGIIFFNDPVNFGRLFSLALVVLGIIGLKVFTK
>NZ_CP051157.1|WP_168455486.1|294504_295698_+|pyridoxal-phosphate-dependent-aminotransferase
MLDLAERMSLIKPSPTIAVTDKANRLKSEGKKICVLAAGEPDFDTPDHVKKAAIQAINEGKTKYTAVDGTRELKEAIINKLKRDNDLEYTSSQICVGAGAKQVLFNLFMATVNPGDEAIIPAPYWVSYIDMINLFGGLPVVVECRQSFKLTAELLKSRITERTKWLILNSPNNPAGVVYAYDELKDIAQVLLKHPNVNVVTDDIYEHIVYDEKFFTIAQVEPKLYERVFLVNGVSKAYAMTGWRIGYVAGRSDVIKAISTLQSQSTSNPNSIAQAAAVEALNGDHSFLEERAGVFRNRRDFVVEKLNSVPGLSVSVPQGAFYLFVSCEGLLGKNTEGGKVINNDLDFAEYLLEDHLVAVIPGVAFGLKNFIRISYATSQEQLEIGCNSIAKACEMLS
>NZ_CP051157.1|WP_168456246.1|292982_294026_+|uroporphyrinogen-decarboxylase
MKEENKSIRLVSSKVTIAEVIRKNRRGEKIPIWLMRQAGRSLPEYRRAVDGISDFIGMCYNTDLVAELTLQPVTRFDMDAAIIFSDILIMADVLGCDINFVRGVGPVIRPVKSSKELGSLQGIEAKTLPVLKAIGKVRSKLPEKKSLIGFAGGPWTVASYIIEGGSSKTFSKALNFCPLGLEEIIEQITKATIVYLIKQIESGADVVQLFDSNAGMLPEELFRQYIIEPTKKIVSAIKSEFPGFPVIGFPRSAKRLYKDYCEQTGISAISIDYDVPIEWAKANLKVPLQGNLNPGLLAYDKTGAIKEARHIVDCFRDLPFIFNLGHGVLPDTPVENIAALVDFVKNY
>NZ_CP051157.1|WP_168455485.1|291787_292603_-|CBS-domain-containing-protein
MSKKRTLGERATYKVFLFLFKKFRALRKCATEVLMKDLPDLNIFNDLLKFHDCNITDIMTPRTEICAVDIESNKHEVTKKIESTCHSKVLVYKNNFDNMVGFFYVKDVIFGRNENFSLKNLMQNVLFVPPSMKTTNLFVKMKSTGSCLAVVLDEYGGTDGLISMTDLVRELLPNVNSGNENFEYTIIKLPQNKFEVSARTLIRGIEENLKIELRDPEEDYATLGGLILSIAGKVPSVGEVVEYKNGVKFIVKDASERYINRIILDLGNYKN
>NZ_CP051157.1|WP_168455493.1|301702_301957_+|hypothetical-protein
MIHSFFYWIPASRAGMTGLWVSSQCSDTGIQVSIIIKMLCFKLKLATFYVHKISLASKLSWIPASSAGMTPFDENKKPLTFDSV
>NZ_CP051157.1|WP_168455494.1|302792_303389_+|threonylcarbamoyl-AMP-synthase
MIPKIINAIQNNLLVCFPTETVYALACSALDSGAIKKIYQVKKRSQNKPLSIFVDNVYSLTKIAVLEEKYISLINRFSPGPITYILPLKNNNILPNEFFKVSIGIRIPNHPIATSILNELKTPIVATSINISGEKSVCKASGIPKSIKRHLSAVVEDDELVSGIESTIIDLTLDKIKVVREGTVSLQTVNNMLSDRNL
>NZ_CP051157.1|WP_168455495.1|303397_304237_+|DNA-polymerase-III-subunit-delta'
MKKVIGHDQAKKKLMNNLSVQSWLICGKKGIGKATLAKSFSHWFLTRNHTEVALDLHIVEGDTIGVEKVREMKNFLHLSPIQSEYKVAIIDSLEAMTNNAKNAILKILEEPPKNSKIFIISHKPYNIQATIKCRCFQLNLLPLTYDETKQIVSSQCKFDDQAFDEIITLFPGTPGIITNAISNDTYESYRCFYKFLSNLNNPEVINKAINSTIELDLASYIIQAFILESIKKRRMNDVEILLSQWKKIDELFVAARQLHLDKRHVLANVVNIIAPVYGV
>NZ_CP051157.1|WP_168455496.1|304295_305090_+|hypothetical-protein
MADNKLTIWQSIEVLTKAILNMRKELNLIKNISTGQEVTLEKGKELSSGIYEANFKLNNVISIATLPKIGYHMLDGELVVRNHITKEEVKIPEDFHYLKVVKLNNSDYKLTFCNILGNEFFEYKKYDPQYSGFSDEYKFVDFGSVKKAHNLKFKEYLGHAPKFFATEGPIEPGSQNHAIDLLGLAKDRAGRKVGTLADEFGYFDDQNKLHYYNYHKSADGNTYDPENFNVKMINMDMNRVDKFYLIAEQGDIIIHPILENLDII
>NZ_CP051157.1|WP_168455497.1|305135_305804_+|conjugal-transfer-protein-TraJ
MDNKLLESVKNQSYFSKAVQWYCYRYLFCVVERSWMVFIVSFLLVCLCLLLLNIYLLFPVKKDLNFIRYANHTENEFSVMRKLSSNKKQDEYISTAGYLISKYVEVYESNKVAEPEYQKNFIKNNSSYKIYQDFQEKVNGEADDLSLSERKITNINVTKLSINRSIKDLVTFSGNATVTFTVEQNKKVKNQTIDISFTLSNIKATLDGIIPFKFIVDNYKYR
>NZ_CP051157.1|WP_168455498.1|306043_306397_-|aspartyl/glutamyl-tRNA-amidotransferase-subunit-C
MPARSTEDVITSLIEFVNKRKVTITKEEMLKITQLVRVKLSDEEIEHYSKELTMLDWIHDTLLQVNTESVSPIRYGTIDKDIHVCNDVVNSQNIKEEILSNTKSEHGYFVVPKVIND
>NZ_CP051157.1|WP_168455499.1|306386_307313_-|ribose-phosphate-diphosphokinase
MKIIIGSTSNKLGESIASKLNIPPSFVQVSKFADGEISVEVESDIYNQEAYIIQSTSPPTNDSLIELLLTIDAVKRSGAKRITTIIPYYGYSRQDRVIRNSNMQSALSAKLIANLIQSAGTNNVAVIDLHSSQIEGFFDVPVANLSCFEVFVDSVHTENLAIVAPDVGAIGRARAFAKALEKKCEIKFSGEIIVIDKYREKAGTSEVMNVIGDVANKNCVIVDDIVDSGGTLCNAAFALKTRGARSVISCITHGVLSGNAVEKISSSVLDKLVITDTILHKFKKTSKIEVVSIANVLTHFIQGGKGAS
>NZ_CP051157.1|WP_168455500.1|307450_308197_-|signal-peptidase-I
MEKLNQGWIARTGRFLSSLFFLLLIALSIRSFLFEPFHIPSGSMKSTLLEGDYIFTSKYSYGYSKHSFPFSPNVFSGRIFYTPPKRGDIIVFKPTRNDSIRFVKRVIGMPGDKVQVIKGELYLNDKKVERKQIKSFFDYESNHSIPRYIETLPGERKHEILIDNVSNKLSYNTPAYYVPDNQFFVMGDNRNNSFDSRFPEIGFVPVENIIGRVSIVGLSFKLKKVDWLPFNFRVPVALRLNRILHSVT
>NZ_CP051157.1|WP_168455501.1|308357_309803_+|DnaJ-domain-containing-protein
MTTDYYKVLGVSKNATEDEIKKAYRILAKEFHPDKCLSSEEQQISRALSDKIRNGGPLSELEKKQKIQIENKVAKFIEIDEAYKILSDQEKRKQYDNNGSSQYPESDGDSEDQQYKFNDFWKKFEDFCEDWCKLIKTGRLFMCIDLGDFEKCNALIKQGIDINTRHDGSNHYIGHEYLNLTPVEVAIKKNQDLILALLIENGATLPSVALISAVKFDAQKVFDFLLERNDIDINHQDEDGNTALHHVFKGYIDKSFDYSGSGWYLKYNGFAESLLGKGIQFDIRNNDGVTSFDLFVDSIRKNKSGISFYDNALNKESIDTYRICVKQRDRLSSISELFIKCGIGELKCGDGTSALSKLSEISGIPIAKKKLNVPIQNPKAKFSPGNPKKNDDIPHGTKGNKLPIITASAGLLLGLSIAYLAGATALISAIAAVAVFAAAALVGALVGYGIGKFCEKVSKERQKDHHMNVGTAIKNASPLNV
>NZ_CP051157.1|WP_168455502.1|309785_310232_-|hypothetical-protein
MTSSGHLDDKKGALGWQLVTENLDLLHQRSGIQPLGRIDTADKMNFSWLKKNIKGKHFRRVDFIIATGLNSDEVGLLALYKKHNPKGKIIAMNLVQPNYLGDDDILVAGDLQETLPDLFENLSRLSTTNENKNEMFTDELPVVSNIQG

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Crispr_ID: NZ_CP051157_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_5

424006-424152

Orphan

Consensus_repeat	Method
CTCTACGTTAGTGCGGAAGAGTATAAAACACTGAAAAAATCGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_5

>merge|NZ_CP051157|5|424006-424152|CRISPRCasFinder
CTCTACGTTAGTGCGGAAGAGTATAAAACACTGAAAAAATCGATTGGTTCATCAAAGCAAGAACATACTAGAATTTCTGATGTTAGAGAGCGTAAGAACCCACTCTACGTTAGTGCGGAAGAGTGTAAAACACTGAAAAAATCGATT

>NZ_CP051157|5|5|424006-424152|CRISPRCasFinder
CTCTACGTTAGTGCGGAAGAGTATAAAACACTGAAAAAATCGATT	GGTTCATCAAAGCAAGAACATACTAGAATTTCTGATGTTAGAGAGCGTAAGAACCCA
CTCTACGTTAGTGCGGAAGAGTGTAAAACACTGAAAAAATCGATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455592.1\|421524_422001_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP051157.1\|WP_168455597.1\|426517_426835_-\|NADH:ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|236176
NZ_CP051157.1\|WP_168455585.1\|414565_415273_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP051157.1\|WP_168455602.1\|430926_432408_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP051157.1\|WP_168456260.1\|428406_429522_+\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP051157.1\|WP_168455589.1\|418080_419343_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|197617
NZ_CP051157.1\|WP_168455588.1\|417401_418040_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP051157.1\|WP_168455601.1\|430722_430914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455584.1\|414204_414582_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP051157.1\|WP_168455586.1\|415342_416065_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NZ_CP051157.1\|WP_168455587.1\|416065_417103_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP051157.1\|WP_168455599.1\|430260_430458_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455593.1\|422100_422973_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP051157.1\|WP_168455590.1\|419413_420841_-\|isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|236416
NZ_CP051157.1\|WP_168455595.1\|424704_425922_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP051157.1\|WP_168455596.1\|426059_426515_-\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl\|CDD\|275223
NZ_CP051157.1\|WP_168455600.1\|430454_430688_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NZ_CP051157.1\|WP_168455603.1\|432430_432619_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455598.1\|426899_428366_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|183662
NZ_CP051157.1\|WP_168455591.1\|420980_421502_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168455592.1\|421524_422001_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.18358e-12
NZ_CP051157.1\|WP_168455597.1\|426517_426835_-\|NADH:ubiquinone-oxidoreductase	gnl\|CDD\|236176	PRK08183, PRK08183, NADH:ubiquinone oxidoreductase subunit NDUFA12.	3.57153e-23
NZ_CP051157.1\|WP_168455585.1\|414565_415273_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	1.27459e-141
NZ_CP051157.1\|WP_168455602.1\|430926_432408_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	4.34403e-120
NZ_CP051157.1\|WP_168456260.1\|428406_429522_+\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	7.58643e-133
NZ_CP051157.1\|WP_168455589.1\|418080_419343_-\|molecular-chaperone-DnaJ	gnl\|CDD\|197617	smart00271, DnaJ, DnaJ molecular chaperone homology domain.	2.50119e-06
NZ_CP051157.1\|WP_168455588.1\|417401_418040_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	4.33473e-106
NZ_CP051157.1\|WP_168455584.1\|414204_414582_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	2.95878e-57
NZ_CP051157.1\|WP_168455586.1\|415342_416065_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	1.07002e-133
NZ_CP051157.1\|WP_168455587.1\|416065_417103_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP051157.1\|WP_168455593.1\|422100_422973_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.6683e-08
NZ_CP051157.1\|WP_168455590.1\|419413_420841_-\|isocitrate-dehydrogenase	gnl\|CDD\|236416	PRK09222, PRK09222, NADP-dependent isocitrate dehydrogenase.	0
NZ_CP051157.1\|WP_168455595.1\|424704_425922_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.49855e-89
NZ_CP051157.1\|WP_168455596.1\|426059_426515_-\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	3.14076e-52
NZ_CP051157.1\|WP_168455600.1\|430454_430688_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	0.00181812
NZ_CP051157.1\|WP_168455598.1\|426899_428366_+\|cation:proton-antiporter	gnl\|CDD\|183662	PRK12662, PRK12662, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP051157.1\|WP_168455591.1\|420980_421502_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	5.31429e-12

>NZ_CP051157.1|WP_168455593.1|422100_422973_+|tetratricopeptide-repeat-protein
MVHIVQKSKIYWLRAGVMSMCGYSASAMFVCILICSMILLKFSPAYANENLEIQEVFDNVAKYIKADDKYKNFEVIERKSNKFNIKVAQNFGKSLSINSILERAQGSFESGDNEAAISFLNQVIAKFPYHKNALIGLGNIYYTNKEYEKSIEIYIRLLKEYPSNSYILENFLTIVSQYNPDLALSEMLKLYDIHKNCASLLANLGLIYMKKADYIKAKEYMIAAISLDQDNIFYIYNLAVILDKLSDFKNASTFYLKLLDMVANSKEVSEKIPIHKVKARVKFIKLHRHA
>NZ_CP051157.1|WP_168455592.1|421524_422001_+|RDD-family-protein
MDKEINYSTIARRVLAFVVDCILFIAIPFCLMVVGFSLTHVIKGIMGAIIVITSIVFSLLLMIPCVFHIFMLVKFGGTPGHLLFSMRVRDKDTLKQITLIQAVKRAIAFFIIYCTPLCNPVLFLAILILVLACAVDDKHRQAFHDKIANTVVIDYKTG
>NZ_CP051157.1|WP_168455591.1|420980_421502_+|RDD-family-protein
MDTEINVKINYVGFTRRAVAEILDYIIFFFPLLIGILIFLGKDDFLQKLKQQEAETLMEEIVGTVIILVPYMALKILMVTRLGGTPGKLLCGMRIKDANTLQNVTLMQATIRCLSKEGIWIIYSFLSDLLPDYVSACLLVVLILVLIFAIFDRCKQTFYDKFANTVVIDYKPS
>NZ_CP051157.1|WP_168455590.1|419413_420841_-|isocitrate-dehydrogenase
MSTPITVAYGDGIGPEIMEAVLSILREAEAKISVDVIEIGECVYNREWSHGISPSGWESIERTKILLKSPTTTPQGKGHKSLNVALRKNLGLYANIRPCISYHPVIENKFDKFDVVVIRENEEDVYTGIEHRLTGDSYQCTKIITRSGSEKICRYAFEYAKKHDRKKVTCLTKDNIMKMTDGTFHAAFDHVAKEYPDIKAEHYIVDIGMARVATEPENFDVIVTENLYGDILSDIVAQTSGSVGLAGSSNVGSKYAMFEAVHGSAPDIAGKNIANPSGLLNAAVHMLVHLGQVGAAKPIYDAWLRTLEEGIHTADLYKEQKSKQKVGTKEFAEAVIDNLGKKPGTLPELIISNGANSKMSKIQDSYKQDYKTKKLVGSDITLAWSKSADFDQIVKLFESSNPKIIAIYSKGLAIWPGSPKSLSDQITCRFIANNEKKTITNSDVNNLLVKLGENNFDVVRMDKLYLYDGKEGFFD
>NZ_CP051157.1|WP_168455589.1|418080_419343_-|molecular-chaperone-DnaJ
MGHHFKLTNQEFNDNANLFYILETKAEQVVGQSHQELSRVLTAQYRKLSRVHHPDKGGNAERFKEINETYKELNAYIEPLKSGNPCSNGCLTAREFYYRKKLFEKLNVIEKEAVGKNYAELRLILKNKNLSFEKNLENYSKLISQISKILQSPSLDIFRKGKEIEGLKQELNQYRVKPGIQLFEYIVPLSKSENLIEEDKKSLALKFIERQNFIQTHIQAYSALPLCLLATVTIGYYFSWWIIAFNIITNKASRLLMNDYIEKYNNEEISTDEFISKINYIVLGSKLLLIYPLAAFSVYLLTTNFIANGLTIGVGILGSLFTLAILIEALAPVFSKGCEIYTEKHTRDLLEEDPKDKVQKETDLLKRYDPRKLLMPIIMPLVRKCFAEVVGECTERNFDEANTNVSDAKVEQLPKAIRFT
>NZ_CP051157.1|WP_168455588.1|417401_418040_-|endonuclease-III
MDPKKVELIFEKFKQSNHTPKIELNYTNHFTLLVAIVLSARTTDVSVNKITKELFNIAFTPEKMLRLGQSELKKRISSIGLYNSKAKNIIELSRILVEQYNSKVPTNFDDLVSLPGVGRKSANVFLNSGLGIPTLAVDTHVFRVSNRVGFVKEKDVFKTEQSLLNVVPKKYLLYAHHWLVLHGRYVCKAQKPLCEACIIHDLCEFECKRYKI
>NZ_CP051157.1|WP_168455587.1|416065_417103_-|phosphoribosylformylglycinamidine-cyclo-ligase
MSTYAKSGVDLKLYNKLIKEVNLIVGKTKKKEEVISEEGSFSALFDFAALSKKYDHPVLVSSTDGVGTKLLIAQEVNKHGTIGIDLVAMCVNDLLAQGATPLFFLDYFATGTLSKDVLLSVVQGIAEGCKQANIALVGGETAEMPGMYSNNHYDLAGFVVGVVNKSKILPKCNTMKEGDCIVGLESNGIHSNGFSLVRHIFKDLGINYNDLSPWNNKTWGEMLLEPTKIYVDSLLPIMSKVKGIAHITGGGLVDNVPRILPEDLFADIDIGSWEWPDIFLWLIKEGKVEKREMLRTFNCGIGMVLIVDPENMQSVKNHFQKRGEKIEIIGKLHEKYKPPLDEVAS
>NZ_CP051157.1|WP_168455586.1|415342_416065_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MLPGKIIYEGKAKSIIEAKDSLTVIQHFKDDVTAFNKEKYEVIEGKGIINNFISAFIMEKLEKAGIGTHFIKTLNEREQLVKKLKIIPLEIVVRNIAAGSFCKRFNVKEGEKLISPIIEFFYKDDNLADPMVNENHVLYFGWLSREEMEEVKTTTLKINKVLVDLFSNAGIDLVDLKLEFGRLMSDKAKIILADEISPDNCRLWDNSTHKKLDKDVFRLSLGNLKEAYLEVAERLSVKLV
>NZ_CP051157.1|WP_168455585.1|414565_415273_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MFNVTILTIFPEMFPGFLSYSLAGKALEKKIWDLDVINIRFFAKDKHSTVDDAPYGGGAGMIMRPDVIGDAVDSVLSAHRDTKFIYMTPSGTRFNQSVAKELIEFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVVLDACVRLLPGVVSNSDSIAEESFSYGGGMLEYPQYTKPKQWREHKVPEILLSGNHKKISDWRRKQSQALTKRRRPELLDGDINDKFT
>NZ_CP051157.1|WP_168455584.1|414204_414582_-|50S-ribosomal-protein-L19
MTSLLEKFNKQQMQVLAKELPEFRPGDDLKVTFKVVEGASERMQIFEGVCISKRNRGLHSSFAVRKVSHGESIVSQFFVYSPALVSVQVTRKGKVRRAKLYYLCKLFGKAARIKERTTYKNSRSK
>NZ_CP051157.1|WP_168455595.1|424704_425922_-|multidrug-effflux-MFS-transporter
MKEKNYCLLVTMVIMMSVIGLMSSDIYLPALPVMAEYFHVRTQDIQTTLSVYLLGLSISQIIYGSLSDRFGRRPVIIIGVAIYTIFSGLCMVSISVKALVVYRFFQAVGACSGMVLGRTIIGDLFKKEEAAQIFASIFPIIGMSPAISPIIGGYLTSYFDWQASFLFLVIVGIVLMIVIVASLEETLPQDKRVSILITDLVKNYGRILCNPIYLAYSTIVCAAYGAYFAYLVNSPFIFNKLGFNPDNIGFFYVTISLSYVLGNILSKKVIKIITIDSALLLGTIIFTTGGLAMLVLAWNIISNPLEIIIPMTILTFGNGFLLPLGVASVISIFPKMAGTASGLMGLMQLSAASISSVAAGYILNELTLSTSLVVFITNIISIFSILLILTIKGKSKQKKFSSGDL
>NZ_CP051157.1|WP_168455596.1|426059_426515_-|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MRRSNILEIAAGLFVLALTIFLACFAVNKLSDIKKSYKDCYKIYGLFSNANGIEVGDSVKISGVDIGSITGLSLDKTTYVARIDMCISKDIKLPVDSSALITSSGVIGSKFINISPGSGVKLISNGGKIEYTQSEANVGGIIDKILGMFSK
>NZ_CP051157.1|WP_168455597.1|426517_426835_-|NADH:ubiquinone-oxidoreductase
MLSKICSAIKHLLRKEGKFIGRDENGNSYYESSKGERWVVYSGIFEPTTVPPEWHIWLHYTDNAAPLNNKKRKVKHTPNLTGTKYAYYPNQKVKNYYESWSPNNN
>NZ_CP051157.1|WP_168455598.1|426899_428366_+|cation:proton-antiporter
MQLPILQVIVPIVASMFCFLTREHKMSWFASFVATAATFFISSILLVKTYSGEVITYCLGDWAPPYGIELKIDMLNSLILTLVNFIALISVLYSFHINEKEISKNKITGFYSLFLLCLSGLLGILVTNDIFNLYVFLEISSLSSYVLVSMGRDKKALVAAFEYLISGTIGATFYLFGIGLLYSMTGTLNMSDMAEKIVPLYDNNIVKLGTLFIFVGLSIKMALFPLSRWLVNSYSEAPSFISIFFSGTVTKVIIYVFIRIFHTVFHQNFFLFKPPLNNVIFTLALCAIVFGSIYAITARDIKRLFANSSISQIGYIILMLGLNSKTSLFAAILHTVNHSIIKTSLFMTAGCISYKFDSTRMENLSGLKKSIPYTTLAFTLLSLALIGVPLTSGFVSKWYMMKAIIESHAWISLIVFAIGSFLALVYMWKMVEKMCFENDAASYAGMAPGSVNKVPLSMLFCLLFMAVLTVLTGVYSTPIRLVVGKLAF
>NZ_CP051157.1|WP_168456260.1|428406_429522_+|rod-shape-determining-protein-RodA
MDKLRKIHWVLVVNVIALFCIGIIVQYSSAGGKWMPFAIHQLVIFSLFFLLAIAMSFIEIEFYLKHAYFFYIAAATLLLLVNFLGAHIMGATRWIKIGSISLQPSEFAKVGLILALARYFNKQSIYKMMEFQRLFKAFIIIFLPVFLVLRQPNLGTAMIMLFIGASIIFTSIIKRSHLIVFGTLGILAIPSIWPFLRPYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGGLGKGFVSGSQTQLGFLPEKRTDFAFAVLGEEWGFLGSMALIFLYTTLFIIIFSIAYRSKNYFSKLVSIGIFAFFGAHFFINIGMTIGLLPIIGDPLPFLSYGGSTTAASLICIGLLLSSVASEEDLRLSARFHSQEDL
>NZ_CP051157.1|WP_168455599.1|430260_430458_+|hypothetical-protein
MHRRDYRDDIHNPVITTCNARTHSPVIPARDAVIQPYFHFYTESKIRGFLFSSNGVIPARDAGIQ
>NZ_CP051157.1|WP_168455600.1|430454_430688_+|hypothetical-protein
MKKEWIPVSGHWDDIIGGYSDDIIRLLGCIVETTGMTSTILSLQRVTLEPTTLSFQRVTLESRKKEWIPVSAARMTL
>NZ_CP051157.1|WP_168455601.1|430722_430914_+|hypothetical-protein
MTLYGAAGMTRRGATWMTSYGNDTDNFVIPLFLQCDGICSHIINNTLGLHIAVNCIDTNYNLE
>NZ_CP051157.1|WP_168455602.1|430926_432408_+|murein-biosynthesis-integral-membrane-protein-MurJ
MFKSIFTFSFFTAISRISGLIRDILVAKVIGATSLADIFFSSFRFANLFRAFFAEGAFTTSFIPLYSTESHDSKKAFNFASSVISLTFIILVIFCLTMQTFFPYMVQVFTPGFDQSKLTLTVTLSRIMIPYIIFISIASLIGGMLQVKQHFASTAIAPIILNLCLIISLFVPYIKTPAHNLSMAVLVGGMLQLLLMLFGAYRSKATFFFSVKLSNEVKLFFKRVIPAIINNCVTQISLWVDTIMASFVPNAVSYIYYADRINQLPQGVIGTAIGTVLLPLISKQVNDIKNTIRIQNRALNVGLMLIIPTTAAFIIIPHTILLTLFSYGKFDYYTVQQTAPTLTAFSFSLPAFIINKVLLLTFFAKGDLKIPTIFSLMCLGINIVLNLLLMNKYQHIGIAIATSISTWINSILLINYLTINKMYKISQVLLLNIIKILVATLVMSIALYISSSLLAGLSLDKVFARVIHLAALVFLSVVIYFGTLIFMGNLKHV
>NZ_CP051157.1|WP_168455603.1|432430_432619_+|hypothetical-protein
MSLYCYMSSRYPFLSSQCLTLGFRYKSIYKLCNRQQILGVYVKNNVHDETSWIPVSTTWMTS

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Crispr_ID: NZ_CP051157_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_6

521847-521966

Orphan

Consensus_repeat	Method
TGGATTCCAGCGTCACGTGCTGGAATGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_6

>merge|NZ_CP051157|6|521847-521966|CRISPRCasFinder
TGGATTCCAGCGTCACGTGCTGGAATGACACCCTTCAATGAACATAAGGAATCTCTTATTTTCGATTCTATATAAAAATGAAAATAAGGCTGGATTCCAGCGTCACGCGCTGGAATGACA

>NZ_CP051157|6|6|521847-521966|CRISPRCasFinder
TGGATTCCAGCGTCACGTGCTGGAATGACA	CCCTTCAATGAACATAAGGAATCTCTTATTTTCGATTCTATATAAAAATGAAAATAAGGC
TGGATTCCAGCGTCACGCGCTGGAATGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455260.1\|521414_521588_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NZ_CP051157.1\|WP_168455668.1\|516695_517178_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|235782
NZ_CP051157.1\|WP_168455683.1\|528906_529500_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP051157.1\|WP_168456269.1\|529535_531341_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP051157.1\|WP_168455682.1\|528183_528720_-\|demethoxyubiquinone-hydroxylase-family-protein	unknown	unknown	gnl\|CDD\|377007
NZ_CP051157.1\|WP_168455679.1\|525753_526077_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP051157.1\|WP_168455678.1\|523583_525500_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_CP051157.1\|WP_168455669.1\|517220_517373_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455680.1\|526197_526818_-\|ribonuclease-D	unknown	unknown	gnl\|CDD\|223426
NZ_CP051157.1\|WP_168455681.1\|527576_528083_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NZ_CP051157.1\|WP_168455671.1\|517625_517916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455676.1\|521607_521769_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455672.1\|517975_519124_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP051157.1\|WP_168455684.1\|531324_532548_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP051157.1\|WP_168455673.1\|519082_519601_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NZ_CP051157.1\|WP_168455685.1\|533078_535874_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP051157.1\|WP_168455674.1\|519584_520214_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|99789
NZ_CP051157.1\|WP_168455675.1\|520342_521173_-\|DUF2163-domain-containing-protein	unknown	unknown	gnl\|CDD\|274038
NZ_CP051157.1\|WP_168455670.1\|517479_517626_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455677.1\|522584_523562_+\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176189

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168455260.1\|521414_521588_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	6.707e-06
NZ_CP051157.1\|WP_168455668.1\|516695_517178_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|235782	PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional.	1.44914e-59
NZ_CP051157.1\|WP_168455683.1\|528906_529500_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	4.00847e-103
NZ_CP051157.1\|WP_168455685.1\|533078_535874_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	7.51226e-25
NZ_CP051157.1\|WP_168455679.1\|525753_526077_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.06178e-38
NZ_CP051157.1\|WP_168455677.1\|522584_523562_+\|quinone-oxidoreductase	gnl\|CDD\|176189	cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	4.33955e-148
NZ_CP051157.1\|WP_168455682.1\|528183_528720_-\|demethoxyubiquinone-hydroxylase-family-protein	gnl\|CDD\|377007	pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7. Members of this family contain two repeats of about 90 amino acids, that contains two conserved motifs. One of these DXEXXH may be part of an enzyme active site.	1.31487e-80
NZ_CP051157.1\|WP_168455680.1\|526197_526818_-\|ribonuclease-D	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	4.64407e-66
NZ_CP051157.1\|WP_168456269.1\|529535_531341_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	7.06795e-16
NZ_CP051157.1\|WP_168455681.1\|527576_528083_-\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	3.19212e-89
NZ_CP051157.1\|WP_168455672.1\|517975_519124_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.5951e-42
NZ_CP051157.1\|WP_168455684.1\|531324_532548_-\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.27738e-09
NZ_CP051157.1\|WP_168455673.1\|519082_519601_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	1.66128e-39
NZ_CP051157.1\|WP_168455674.1\|519584_520214_-\|oxidoreductase	gnl\|CDD\|99789	cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.	1.99625e-34
NZ_CP051157.1\|WP_168455675.1\|520342_521173_-\|DUF2163-domain-containing-protein	gnl\|CDD\|274038	TIGR02218, conserved_hypothetical_protein, phage conserved hypothetical protein BR0599. This model describes a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions. [Mobile and extrachromosomal element functions, Prophage functions].	3.52905e-97
NZ_CP051157.1\|WP_168455678.1\|523583_525500_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0

>NZ_CP051157.1|WP_168455676.1|521607_521769_-|hypothetical-protein
MHHFGQAGSQCRGTGMTRKGATWMTQLELQGWTSADYLLIAMFVTIMQEIYHR
>NZ_CP051157.1|WP_168455260.1|521414_521588_+|hypothetical-protein
MAQQCHPSSLIMSSQCLFFVIPVPRHWDPLFFFWIPASRAGMTPFDEHGKPLIFDFA
>NZ_CP051157.1|WP_168455675.1|520342_521173_-|DUF2163-domain-containing-protein
MQTTLKNHLAGELLTITTCWKLTLADGKVMGFTDYDEDLSIDNILYKSSSGFTASSIILNSDLKTDNLEIEGVLNSDDIREEDVLSGKYDFANIEIFLVNYKDLSQGMMNLHLGTFGKITLNSGRFIVEIRGLATKLERSIAELYSPVCRAQFCDGRCKVDAKKFSKIGTITKVIDERRFEGTNLTESDGYYKHGLVKFFDSTTHAAFEGIVKEHKNKVVTLFTSPPYQVSVGDKYSILAGCDKTFSTCKSKFHNTVNFRGEPYIPGFELAQQHNF
>NZ_CP051157.1|WP_168455674.1|519584_520214_-|oxidoreductase
MKNIMLIGGGVGNAVLFSIGKACLENNNRVLYFAGYRKLNDVFKQVLIKRASSAVVWACEEGLIKTNRDQDKSFRGNIVDAIISYQKGILGDITISLDAIDKIITIGSDKMMKAVNEARKTILRPYLKSSHMAISSVNSPMQCMMKEICAQCVQRHINTKTGEESYVYSCSNQDQDMELVDFDFLSERLKQNSLQEKLTAKWIDHVQRY
>NZ_CP051157.1|WP_168455673.1|519082_519601_-|5-formyltetrahydrofolate-cyclo-ligase
MFKDIKQQKKEIREQYRAIRKNIDESYSNCAANSLVNLFNQNLSYIKGKTIAAYIPIDGEINVIPLMHNLLNLGYKVAIPDENKPLRFKEWNKTDEDIIPDTIITPVIAFDDHLNRLGFGGGWYDAVIKELRPLGKIFIGVAYEKQYCKNLPIEEHDQKLDVIITETRFRRG
>NZ_CP051157.1|WP_168455672.1|517975_519124_+|Fic-family-protein
MDIKESPSGKVINTLAGYQAFIPDPLPPKFEWDNDLVKSLSRADHILGMLSREGAKLPNPHPLMRPFIAREAVLSSRIKGTRATLGEVLAQEAGANVDCNPDDLQKVRNYIAALNYGLMRLQSIPVSLRLIKEIYGRLMQYARPGEFRHMQNWIGAPGCTIDTAKYIPPASGELMDCLYSFEKFLRDKTLPPLIYIALCHYQFEAIHPFSNGNGRIGRLLITLLLIERKLLPSPLLCISAFFEATQSEYYIQLYNINSKGTWHDWFSYFLNGVALQSLDVLSRAEQINNLITDWQSSKTEGVASDIIRYLAVNPYFTIKRIVENLGVAFTTAQRAVMKLEDLGIVSQTSKGKRERVYCATDILKILEEPLPTPKTCLGDYDI
>NZ_CP051157.1|WP_168455671.1|517625_517916_-|hypothetical-protein
MKIRLYPFAWMKMRNLLFSILCKNENKAGFQRHATCMTLLGSEPALSAGMTGLWVSSEWFSDVIQVVLVFLSSQYLILGSILFSLDSSVTRWNDTL
>NZ_CP051157.1|WP_168455670.1|517479_517626_-|hypothetical-protein
MNIGNLLFSILYKNENKAGFQRHATCMTPSGSEPALSAGMTGLWVSSL
>NZ_CP051157.1|WP_168455669.1|517220_517373_+|hypothetical-protein
MARNFYVSIQRHIEVKVMSFQRMTLESTTLSFQRLTLEPSLIFIFTQNRK
>NZ_CP051157.1|WP_168455668.1|516695_517178_+|single-stranded-DNA-binding-protein
MSGGTVNKVILVGNLGRDPEIRTMQNGKEMASFSIATSESWTDKFSGVRSERTEWHNVVVFSEGLVKIVKDFVRKGSKVYVEGSLRTRKYTDQNGSERYITEVLLQNFSGILTLLDPRNSAPNSDYKPNEYKQDEPVQKNQYENFDSEIKEELIDDEIPF
>NZ_CP051157.1|WP_168455677.1|522584_523562_+|quinone-oxidoreductase
MVRAVQIKRIGGVEVLEFVDQSIGELKGEEVLVRHTAIGLNRYDLEHRKGIRKIKSLPSVLGVEAVGVVERLGKKAGDGLQIGDRVGYCTAPPGAYCEKRVIHQKYLIKIPNEISDEIAAAVLFKGMTAHYLVNHSYKIKPGAVVLVHGVNGGLGQILCQWASNKKGVVIGSVSSDDKMQVALQNGCTYALNYNDKNFVSQIMEITQNKGVGAVYDPIGYVTSRLSFESLGRFGIYVSYGQISGSAPVSFSLLSSRSLFATGTSIYHYKRDRFTLVLTAMEIFEMIKKKLLAVRINRKYKFNEIIEAHRDMENRKTSGLNIIKIS
>NZ_CP051157.1|WP_168455678.1|523583_525500_-|UvrD-helicase-domain-containing-protein
MDDYLSLLNPEQQSAVTNIDGPVLILAGAGTGKTKTITSRIAHIIRNNYANSNEILAVTFTNKAANEMVSRVLELTGTNIPWLGTFHAIAAKILRRHAEIVGLNSNFTIIGVDDQLQVIKNIISEIGPDNLSEKHKTIMSIIQQWKEKCLLPSEVESAQLFRSVYVTALKVYHQYQERLKFLNSVDFGDLLLYNIQLFNQSAEILYYYQNKFKYIMVDEYQDTNAIQYLWLKHLAKEHSNICCVGDDDQSIYSWRGAEVENILKFSDDFKNAKTVKLECNYRSTSHILATASYVINHNKTRLEKKLWTTNAQGEKVNLIKLWDGKAEARFISEQILKLNKYRFSDIAVLVRATFQTRVLEEYFIKYSIPYKIISGVKFYERQEVRDIIAYLRLVINNNDDLAFERIVNRPKRSIGLTTLKKIYAIAQDNKTSFFEAAKILVGSNQITERIKLSLSDFLNKIKAWGEMVSVKPLHEFVKTIANKSGYIEMLEDEGVMGLARIENVKELISSLKNFDNATAFLEHISLVMEVDNMNNDDTVYVMTLHAAKGLEFPCVFLPGWEEGLFPHQKSFEDESGKALEEERRLAYVGITRAKERLIISCADRREMNNQWQSMYISRFVKELPRENVEVIRSSITYC
>NZ_CP051157.1|WP_168455679.1|525753_526077_-|thioredoxin
MSGDITSINDQNFKSEVADYKGFVLVDFWAEWCGPCKSLMPRIEQLAQDKKGKIKICKFNIDEGTEVPSKYGIQSIPTLIVFQDGKEIARKIGAINDLSSWVDSEIS
>NZ_CP051157.1|WP_168455680.1|526197_526818_-|ribonuclease-D
MRIFVHKDDLPASSIPDNVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQFKNNYTAPNLRKILEDEKITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCFELLDIKLNKQQQSSDWGNENLTDKQKSYAASDVLHLHQIKEKLDLMLERENRKELAQKCFEFLPTRIELDLMGWENADIFNHQM
>NZ_CP051157.1|WP_168455681.1|527576_528083_-|inorganic-diphosphatase
MDLSKITAKADFLSVIIEIGANAEPIKYEFNKELGLLQVDRFLSTAMAYPCNYGFVPNTCAGDGDPVDVLVLTQFPLASGVLISVRPIGALLTKDEKGEDEKVLAVPTSSVDSYYDNVKNYSDLPESLLDRIVHFFSHYKDLEKGKTVTVGKWVGMEEAKKIIEKAIK
>NZ_CP051157.1|WP_168455682.1|528183_528720_-|demethoxyubiquinone-hydroxylase-family-protein
MEKENCNIKELKGNFLEQAIRVNHAGEYGAICIYSGQKFILKKSFIINEIIEMEEQEKKHFHYFNEKIKEQKVRPTVLLPVWHVLGVSLGVATAMMGKKAAMACTAAVEEVIGEHYKKQVSHLEDGELKETISKFRDEELEHRDIAIEHNAEGAFGYNILSSFIKTGCKAAIYLSKLI
>NZ_CP051157.1|WP_168455683.1|528906_529500_-|guanylate-kinase
MTTKSEGILLVLSSPSGAGKTTILERLLEQSTDLVRSVSVTTRKPRLGEVNGKDYFFVTEEKFHELCKAGQMLEYAKVFENFYGIPKDFIEQNLSNGISVLLSIDWQGAFHLFKLMREKIVSIFILPPSMEELRLRLQRRNSDSASEIERRLAEAQKEMNKRDKYDYIIINDNIDKSIEEISSILAKERLKRSKEKL
>NZ_CP051157.1|WP_168456269.1|529535_531341_-|pentapeptide-repeat-containing-protein
MKKMIRFLILILVSYLCYGNEVNDRKDLINDFLNTLHKIEYASYSKEDFAKFLVKCHKEDIPEDFGKGFGPDLNGADFSRLYLNGSIFDGVSLIGADFSHTDLSGVSFINADLRGANFSNANLQDIRIEGTNLSFAKFVSANLTDITFNQSDVSYAEFVSSDLKKVEMYNTTGLHTNFSNVKVNFSSLLDSNVNSVNFSDSEINNTVVQRSNLNNANFFGVDSYRLKIQFSSLENADMYGVEIKESDFTGSNLSNVCLNSSAIIDSNFNRANLSNVQISYLDSTNSSFVQSILNGSKIKHSYVSEVSLHDADLSNIDFGSSELYQVDVSDSDVRHGKFDSTKVTNSNMNGSFFDYSLFTSTKIEDTDLSLASMYKVKVQDSQIYNSKLSHHSIDSSEIERSTFFNVVANNSSWSNLKVINSHFVESNFESSLLRGNAFKKTCFFLNNFNNSAIGGTSFDSSSIYKGSVVDAHLTDCKFNHSILIGNKGQEKLTGLENAIISIKDLQEEILRNKRFDVNYAYFEFQDMNLENADLSGSMLSRTKFINVNLNKANLEKTDLRYAVFDNSSLVGTNFLNSNREHSDFSKSDLKNAVLENSKSNK
>NZ_CP051157.1|WP_168455684.1|531324_532548_-|hypothetical-protein
MRSILYFTLLFIVFGSSNLFAVEQLEGKKIDVGESVGSVHEDVGIEKDLKQDLPHKLIQQENELEFSKSDIDELNIEKTQDTKTEQAADKEELKHNENEISTVEKVINEKGARDKDFDNNLPEESKNEVTPSPPSVTDKEMNKNLALSPSVGLDENATDLQKDLQVDRRVDVKENQPSENSANKLSEEKKANGQIEKEEVEKSAEDRDEKNQIKPIAEKGKQEEKKNLQEWTKLNRESIKEWYHQNAQSKSIYKRQYDNFNEHLPATVFVDDYSKQFFYCIKKNNLVCLRGMMGKLEKLGLTVQEVLKLRNKFGDTPLIYAVKRGEIDIVRFLLLQGADPKVVNNSFQSSIDIAVEKGRSDMVNAIAEMIPYLSNYKKIDNKEGLKMYDWAVKTKEDNELQCNEEDD
>NZ_CP051157.1|WP_168455685.1|533078_535874_+|hypothetical-protein
MPTNFPILQEILIELKKESSITVLRKYCQDEWEFHDLLRDLTNDKDFKQAYIEKYFSKSFKKDLDCYIKLANQTKKAVSKYFERKGIEFQAYYTGTNDADRILNINLTNYNEEQQIRISDILQQEKNISELNVYCNKKHDIHAYRKDKERHYEFQDGAYYEMASTWSAIDKLGKTFMCTLVMKVSNDGITEILKFNGKSFTASDEVLELIEQNRELYIQGLSLHEAVKALLERNKNASLPDVIPIANNNLQNNESVKVNQDKELDGQNFENDANNNLLFPTHNNASIQTEINLQQVATQVEIDSQPIATQTEASLQHTEAQTEITTQYVEVQTEITTQYVEVQTEIDLQSIATQTEASLQHTAVQTGITTQYIAVQTEIDSQPIATQTEASLQHAAVQAEVTTQHVESQTDTDFRSTATQQEIKELNKQKDDLQHELERAKQNNLGLQAKLTQKDEELANTSANLQEKTRELENVHEEKENLKKKLEVASAEKKELLSKLRELQKELNQLEGKNYELEDKNDRLERSNKSIKEREEQLLQEILSLEERLSEVRQEKQVLIDSLKSAEAEKAGVNKELVKAKQTIEELGKQNDSLQDKLEMEEKKHEKLQAKLKQKSEELASISENLQEATQELESVYEKKGNMEKDLKVVNTKREKLEDELKRFEEEVEQAECIMNEKEKYITNLKSQMQNLESESKACIESSKQEIEELLWKITELTEKLKLTDEQVKKQRDQLQAEVAQEIVDKYGPQLKSRFEEYEGEIDVLKAKIEGWEEMFTALTEIVANKVQKIKKVKDELCSSTGEVEDLDSQVKYLSSQVEMLSIEIHQLFTSKQKIFNDHAKTFYKLTGNIDDLEEGPRSPRCDSTSHNDCESYNGHLKKRKLSRSSSSDSRYDSSKESYDNPLSFVSSLSKVCSPSCISQSQCSDHSSVHP

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Crispr_ID: NZ_CP051157_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_7

616776-616896

Orphan

Consensus_repeat	Method
CTGGATTCCAGCGTCACGCGCTGGAATGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_7

>merge|NZ_CP051157|7|616776-616896|CRISPRCasFinder
CTGGATTCCAGCGTCACGCGCTGGAATGACACTCTTCAATGAACATAAGGAATCTCTTATTTTCGATTCTATATAAAAATGAAAATAAGGCTGGATTCCAGCGTCACGTGCTGGAATGACA

>NZ_CP051157|7|7|616776-616896|CRISPRCasFinder
CTGGATTCCAGCGTCACGCGCTGGAATGACA	CTCTTCAATGAACATAAGGAATCTCTTATTTTCGATTCTATATAAAAATGAAAATAAGG
CTGGATTCCAGCGTCACGTGCTGGAATGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455765.1\|628252_629275_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NZ_CP051157.1\|WP_168455766.1\|629262_630540_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP051157.1\|WP_168455753.1\|614175_615087_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|365980
NZ_CP051157.1\|WP_168455751.1\|611703_612969_-\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|274452
NZ_CP051157.1\|WP_168455761.1\|625496_625841_+\|ribosome-binding-factor-A	unknown	unknown	gnl\|CDD\|223927
NZ_CP051157.1\|WP_168455747.1\|608319_608478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456274.1\|613382_614183_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP051157.1\|WP_168455762.1\|625843_626701_+\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237228
NZ_CP051157.1\|WP_168455750.1\|611242_611380_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455758.1\|618444_621519_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP051157.1\|WP_168455760.1\|623179_625495_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP051157.1\|WP_168455757.1\|617158_617356_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455746.1\|606950_608138_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP051157.1\|WP_168455749.1\|610817_610979_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455763.1\|627064_627307_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270847
NZ_CP051157.1\|WP_168455759.1\|621607_623170_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP051157.1\|WP_168455754.1\|615116_616613_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235835
NZ_CP051157.1\|WP_168455748.1\|608658_610596_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP051157.1\|WP_168455752.1\|612975_613239_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP051157.1\|WP_168455764.1\|627385_627823_-\|stringent-starvation-protein-B-domain-protein	unknown	unknown	gnl\|CDD\|226335

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168455765.1\|628252_629275_-\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NZ_CP051157.1\|WP_168455753.1\|614175_615087_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|365980	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.	2.34109e-06
NZ_CP051157.1\|WP_168455751.1\|611703_612969_-\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_CP051157.1\|WP_168455766.1\|629262_630540_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP051157.1\|WP_168456274.1\|613382_614183_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	2.87474e-64
NZ_CP051157.1\|WP_168455762.1\|625843_626701_+\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237228	PRK12847, ubiA, 4-hydroxybenzoate octaprenyltransferase.	2.31925e-135
NZ_CP051157.1\|WP_168455758.1\|618444_621519_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP051157.1\|WP_168455761.1\|625496_625841_+\|ribosome-binding-factor-A	gnl\|CDD\|223927	COG0858, RbfA, Ribosome-binding factor A [Translation, ribosomal structure and biogenesis].	1.44921e-15
NZ_CP051157.1\|WP_168455760.1\|623179_625495_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP051157.1\|WP_168455746.1\|606950_608138_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.11227e-15
NZ_CP051157.1\|WP_168455764.1\|627385_627823_-\|stringent-starvation-protein-B-domain-protein	gnl\|CDD\|226335	COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown].	5.05985e-25
NZ_CP051157.1\|WP_168455763.1\|627064_627307_+\|hypothetical-protein	gnl\|CDD\|270847	cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an RS domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	0.00496997
NZ_CP051157.1\|WP_168455759.1\|621607_623170_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	2.71695e-174
NZ_CP051157.1\|WP_168455754.1\|615116_616613_-\|cation:proton-antiporter	gnl\|CDD\|235835	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP051157.1\|WP_168455748.1\|608658_610596_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP051157.1\|WP_168455752.1\|612975_613239_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.33935e-19

>NZ_CP051157.1|WP_168455754.1|615116_616613_-|cation:proton-antiporter
MDYVLAFLSLPLFITEDYLLITALIPLLGAVIIFFTGKWSGVSNSIAVASSVLLFTYTCLCALCWAYGDHSQFILMDFGNNLHISLKLEFTGVVFSLLISFLWILTSIYATCYMQSNYHDRNYSNFLCFFSISISCTMFIAFSGDLLTTFVFYELLTISTYPLVTYHGTNESMIAGRYYFGVLLFSSLVLFFPVLGFLYNEFHTLDFVSSGIFKFDTSLTTFTAVCFAMLIYGIGKAALMPMHFWLPKAMVAPTPVSALLHAVAVVKSGAFIIIKVILYTFGTNNLQRFVQQNWFAGGWLPYAAGFTIIAASLIALKQKELKKLLAYSTVSQLSYIILFASIFSDLSAKVAVFQLVCHAFAKITLFFVAGSIITKTGEKYIDRIHGIGRSMPITMIAFTMGALSMIGVPPAPTFWGKFLIFQAVFNSGSTALSIFVTFVLIVSTILNSMYFLPIIYNAFFSKSSKNFFIKKTPIFLVLPPAITAICTFAIFFGYQIIF
>NZ_CP051157.1|WP_168455753.1|614175_615087_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MARKIILQLLISMVIIFVLTSTFMLIVAHINKGKPERKDKLYEINTASGGLTQTIACYLVKPILESALDRYIEKHGLKEYLEEIVQQEEEENTINFYEITEGEGSKAFCGQEVLLQVHKMSHSLSALPSLSSQASDVTLKIGQDNWKEVGLGVIGMKEGGERVVTVGSIANDNKMNFSSYYVKLLEVKDEYPDSVSNMIILDNLVHKTGKQVKCGDKVSIRYSIMEHDGEHLVENQTAQFKIGDKKVPLAIELGVVGMRAGNDRTIISPPELLNVTDDMLIEDIDFDEENVSIINLSLDTKPQ
>NZ_CP051157.1|WP_168456274.1|613382_614183_+|polyprenyl-synthetase-family-protein
MLDETIKRLLIAEIDKILPEDSQNKLISAMRYVLLAPAKYIRPFLVIASSRVFNVKIERAISVAVAVECVHTYSLIHDDLPCMDNSDTRRGQLSCHKNFDEATAVLAGDALLTFAFEILSSLNEDSNKRCEIIKVLSQAIGAKGMVRGQILDIDVDFSKAKEIHLLKTAKLFAVSCEIGAIVGDATDKQRRALYDYGINLGLIFQVKDDIEDYKQDKINNLMSVLDGSEVENYIEALFKQALANLGKLSGDTNDLYNLLNRVRKNG
>NZ_CP051157.1|WP_168455752.1|612975_613239_-|acyl-carrier-protein
MNNELAKSTREDIEEKVKKIVLEHISKDVEKFNNSSKLSEHGADSLDAVEIIMAAEEEFGIEIPDEDAQKMETMDQIVKYIVKKINH
>NZ_CP051157.1|WP_168455751.1|611703_612969_-|beta-ketoacyl-ACP-synthase-II
MSRRVVVTGIGLITPLAADVENTWLKLIGGQSGIKEISRFDASDLACKIAGQVPLQCDNIEHCFNPLDYLSEKDLKRTDRFIHYGIAAAIQAVDDSMILESQNINRERIGVAVGSGIGGLPSIQENVITMQEKGPRRVSPFFVPASLINLISGHISIKYEFTGPNDSAVTACATGAHAIINSARAIKLGEADVMIAGGSESALCRVGIAGFASMKALSTKFNDKPEEASRPWDEERDGFVMGEGAGILVLEEYEHAKKRGAKIYAELTGYGLTGDAYHITAPHSEGRGAFKAMQIALKSAQISPNQIGYINAHGTSTPLGDKIEVIAIKQLFGDYADKIPVSSTKSSIGHLLGAAGSVEAIFSILALNNGITPPTLNLHKPSEGCDLNFVPFKAQEHKIQYVFSNSFGFGGTNASLIFGQV
>NZ_CP051157.1|WP_168455750.1|611242_611380_-|hypothetical-protein
MKIRLTLSAWMNIRDLLFSILYKNENKAYIFAWMKIKKSLIFDFA
>NZ_CP051157.1|WP_168455749.1|610817_610979_+|hypothetical-protein
MSFQRLTLESSEKEEWIPVSGHWDDIIMLLGCIVEVKWMTPANYLLIAVFVQP
>NZ_CP051157.1|WP_168455748.1|608658_610596_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MYKYDVVVVGGGHAGCEAATAAARLGASTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAIDQASIHSVILNSSRGAAVWGPRAQADRKLYKRAIQEIILNYSNLAIKEESVDDFLIKSNSNGEPHIKAVITSSGEHILAGRVVLTTGTFLCGVVHVGEQTTPSGRMGDKSAVGLANTLKKYDFKLGRLRTGTPPRLDRGTINWPVLQEQVGDNPPTPFSYLTEKINQPQVSCFITHTNENTHRIIRENLHRSASSYLDDVVAPRYCPSIEAKVKKFAEKNSHQIFLEPEGLNDDTVYPNGISNSLPIEVQREMINSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKIKGLYFAGQINGTTGYEEAAGQGIIAGINAALSASGKKESFVLHRTDSYIGVMIDDLVTKGVTEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLVSYERYSVLQNKLKSIKQLEEKLESLTITPEQLRFYGIKISYDGIRKTALDLLSYPNIDWNELQEIWPELNSVTRWNDTRMDAANSPVIQVANTEIQEIIEIEAKYKPYLIRQEADMKFLREEINTQIPINFNYSQVKGLSSEVIEKLQMIKPATIGVAKQIQGITPAAIVSILVYLRNKKISKVAN
>NZ_CP051157.1|WP_168455747.1|608319_608478_-|hypothetical-protein
MKKYYHRGSYGYMGTSEQQRGAIQNRKSNIAKLLKYYDPNPKTIRHTVIAIE
>NZ_CP051157.1|WP_168455746.1|606950_608138_-|MFS-transporter
MENRAKAWCTWLISNLVVIFSNMQIVYTFISVHLEKELKLTIAQIALANSAYNWTFAILQFFSGAIFNAFSNKKIYFFSLSAMIFGFFILINGNNFAYLILSQLLIAIGASFGFVGAAHISSICFPIAQFGLMFSLVQTISSLSALGIQMLFSSLLVGGAYWKDLIVYIIIFGVLTFTLTLFYPDKLLKNSSEKHTIKGSIKTVIRSVLMVLRLKDIWITSIVGAITFGTFLALNTLWAPRLLSNLGLNAMESGIATAVLWLGLAIGAPTANQISNLLKNRKHVVSAFALLQSASIIILLCSNLTVYIIYFCMLMFGFFAGGHMLNFTVGSEIVKQRYISTSSSIINGFMFIMSGIITSTLALFTDHYVALFSIFAMLIIASILNYATKETYNKK
>NZ_CP051157.1|WP_168455757.1|617158_617356_-|hypothetical-protein
MTEKKTIWMTSLGHSGDIHNPVITTCNARIYNPIILVLDAGIQPYFHFYAKSKIRGLLCSSTQIR
>NZ_CP051157.1|WP_168455758.1|618444_621519_+|efflux-RND-transporter-permease-subunit
MKSLLVEKNRAVILLLIVIFIFGSYAYIKMPRESNPDIQIPIISVFVRLPGISVEDSEKLLAIPIENELRSIEGVKELQAMATDDGAHIILKFGTEYNNKEVLDNVRSRLSNIKSKLPAEAESPIVSEVNLSLFPILSVGLIGNLPERALTEIAHKLKKEIESLPSVLKVKVAGMRKETVEVIIEPTVLTKYNIQSNEIFYAISNNNKLVEAGSLDSDTGKYSIKVLGLLKDVEDIMEIPIRSQGDAVLKIKDVAKVYPRFEDYKEFARINGLSSIVLEVSKRSGKNIIDTVNQVKYLMDKAKDQLPENLKIVYLNDQSKNVRNVLDELENGIIFAVLLILIIIILSMGTRIAILVALSIPGSFLIGIIALYFMGITLNIVVLFSLIMAVGMLVDDAIVISEYADRKMICGMNKIEAFSTSVRDMFYPVLSSTLTKLAVFFPLLFWPDTIGKFMQYIPITMILTLTGSLVMAVVFIPTLGAIFGEPSVISKGEIKKMNAIESGDIRNTGPIIRAYVHILEKVLDHPKKFVFASVLMLFSFSVLYFTCGPGVKFFPKVDSDNILISVKAQGNLSAKERDLILKEIENRILNMKEEVKVFYAKSGLFGDNVIAQIQLELIDWRFRRKARDILNDIRTCVQDMKGVIVDIQEENPGPSADKPIQINLSGNALNLDLAVEKILKIMNQPSSGFINIQDSRPAPEIEWSMNVDKSKAASSGVNVATIGDFIKMVTSGVLIGKYRSNSLNEEIDIILRFPEKDRNMKTIENLFINTTSGPYPMSNVVKYSPEKKVSKLSRIDGSRTVTISADVDHGYLVDERVKFIQGSIAKDWDREVKINFKGDKEDQQKSEAFLLKAFVLAITLMVLVLVTQFNSVYHTFIVMTAVFLSTTCVFFVFFLINKVFVIVMCGVGIIALAGIIVNNNILLLDAFHHQVKIYENNIKQCVINASVSRVRPILLTVATTVLGLIPMITKLNIDFFSLQVTYNAPSSQWWVDISTTIACGILAATVLTLFFTPALLVMHRHEKT
>NZ_CP051157.1|WP_168455759.1|621607_623170_+|transcription-termination/antitermination-protein-NusA
MIANRRSSVKQKSDKNNLVGSIDIIKTAAELSLQKGLDFEVIMEALESAIEAVAHQKYGSKSKIVVNIDRNTGKVTSYRELKVIDDESNGKENAGYDSITLTQAKLIKEDVKVGDTINELLSLNTDLASARIAQQRIAQVIKYEELKKQYEEFKDKVGEIRYGIVKQLEYSDLIIDINNARAYLPLRNLIGGESFREGDKVKAYIHTVKRSDDGRQIILSRSHEGFLEALLNQEIPEISDGLVKIKAIARDAGSRSKVAVFSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVIHYSSDLGQFVIKAITPAEVSKVIIDENENCVELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTKQESERRSRELSQCSALFAEALNLEEIMGQLLVTEGFSSVEDISSASVKELASIEGFNEDIANELHNRANKYLRAENDKKIEELKTLGMEDDVINLPLSVDDKIALSKHGIKTLEDIADLSSYEFYSILSDSANNKEDLKDTVDSIIMEARKKLGII
>NZ_CP051157.1|WP_168455760.1|623179_625495_+|translation-initiation-factor-IF-2
MNKEEDISSKKLTLQGFNKLKLGLDLSSSVGLSTGATIVKKRRKKTHEPEEQDESKLGSLTEKEQIFRINAVQNAALLREKNLEKEKEVVAQQEDTNEKIDDEDSTSNTPLKETDLSDVSLVKLAEGGIDDEDANTKPLKTNKDAYSKHSKLIIAQSIDDKVEQTPVSRQRFGIRNKKSKFTKGKNISREVIIPDKITIKELAIRMAEDGKGVLKVLKEEVGESYRIDDLIDPDIACEIVEKFNHIAKRVSDADKEKDLFFIKGRESLPKKPKPPVVTFMGHVDHGKTSLLDAFRESNIAERESGGITQHIGAYQIVTKDKQKITFIDTPGHEAFTAMRACGANITNIVVIVIAADDGVMKQTIEAINHAKAASVSIIVAINKVDKSQPGDVERIINSLPQYDLIPEELSGDVIVVPVSAKKKINLDKLEEAILLIAELMKLEAIEDCRALGWVIESKIDKAKGISATLIVEEGTLKVGDMLVAGTTYGRIRSMINHLGQREKTALPSTPIEITGLNSVPNAGDKFVVANSEKQAREIVEHRLELIKKKEENASNYGLDIFSRNDSEAEEISVVLKCDVSGSIEAISSSIDKLGKDQVKLNILHKAVGGITDSDVLLAEASRAVILAFNVKVDSKIRDLAKQKGVEIHTYAIIYELIDDMKMYLTRMLKPVTREVHIGSVSVRQIFNVSKTSNIIGCYVSDGVVKKDSLIKVMRNDKLIHEGRIKALRRFKDDVKEVGVNFECGISLDGNVDINVGDVLEVYQLVQEERVL
>NZ_CP051157.1|WP_168455761.1|625496_625841_+|ribosome-binding-factor-A
MKKEIRSLKIASVLHRAITRVLMEGKVFNKNVVVSEVKLSKDLKKADVYVVLSSLSEKDCDISTIVDEINQSAWLIRKSILCYVDLRFVPKLVFKTDLAFDNFVNVSKILSNHT
>NZ_CP051157.1|WP_168455762.1|625843_626701_+|4-hydroxybenzoate-octaprenyltransferase
MNCYHYFSLMRLHSLTGLWLVLFPSLSGVILASTSLSWQTFALLILFSIGAFLMRPVGCIINDIFDREIDAHVERTKYRPLASGALSVKQAVILLSLLLSIALIILLLTNKTTLILGVISMCMIIIYPLLKRYVWWPQLFLGFTFNMGSLLGWAAVKNQISIEPMLFYAGCIFWTLSYDTIYAHQDKRDDEKLGMKSTALYFGDTTKSWLKRFHLISLMMWLYTGILSSLNNIFYIALLAVGVMFHYQYKNLNPDDSSQCMSIFKNNSYVGLLLFCGILLDRVIN
>NZ_CP051157.1|WP_168455763.1|627064_627307_+|hypothetical-protein
MKITLILMVIDFLHYGQSCTNILLNNVIRVADIGIHSFFHWIPALRAGMTPFVVNSLLLYDYLFILPCLPYLVTPLNRYN
>NZ_CP051157.1|WP_168455764.1|627385_627823_-|stringent-starvation-protein-B-domain-protein
MDKTDYKKSLNFAKCQVIKKALDAISSNEFTPHLEILFFTYFNGVVIPDYLKRSYPAQMLIILQHQFYDLKVFEDKFSVRLSFSGKQEQITVPFFAINEFHDKISGDILVFDKISIDSDKEYTSEKCTEKSSNGSIISIDQLRDK
>NZ_CP051157.1|WP_168455765.1|628252_629275_-|GTPase-ObgE
MDFIDEVRLYLKAGDGGDGCASFRREKFVEFGGPNGGNGGKGGDIVFVSDANLNTLLNFRYRRHIKANDGKSGASRDRSGTAGKNVVLKVPVGTQIIDEESEEVIVDLDKPEMEFQVVQGGKGGLGNTNFKSSTNRAPRHFTYGQPGEEKYVLLKLKVLSDVGIIGMPNAGKSKFLTRCSNADTKVGDYPFTTIRPHLGVAKVDDSEIVIADIPGIISDAHLGVGLGHKFLKHIERCKILLHLIDITHDDVISAYDCTHNELGFYNGDLVRKEEVVVLNKCDLSEEAEILEKKNHLANYLDKEVLCLSIDDDLQPILRLLSEKLKKSSPKKINKYDPFKT
>NZ_CP051157.1|WP_168455766.1|629262_630540_-|phosphopyruvate-hydratase
MMKKIINNVFAREILDSRGYPTVEVEVELCDGATGRASVPSGASTGKLEALELRDQDEKRYCGKGVLKAVQSVNGVIADEIVGMDAANQGAIDKVLIELDGTQNKSKLGANTTLGVSLAVAKAAAHSFKMPLYRYLGGEQASVMPVPLINIINGGVHADNKLDFQEFMILPVGAETFSEAIRMSAEVFHNLRSILRKKGYSTNVGDEGGFAPNIESTEEALNLIIQAVESAGYSVQSDFALGLDVASSTFYEDKIYKFENRELTSEELAEYYCDLAEKYPIISIEDAMSEDDYEGWKLLTAKLGNKVQLVGDDLFVTNCELIRKGIEEKMANAVLIKPNQIGTLTETLAAIEMAKSNGYKAIISHRSGETEDITISHIAIASNCGQIKTGSLSRSDRLAKYNELIRIESILGESAKYYRGLAWTS

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Crispr_ID: NZ_CP051157_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_8

748497-748589

Orphan

Consensus_repeat	Method
AATCGAAAATAAGAGGTCTCTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_8

>merge|NZ_CP051157|8|748497-748589|CRISPRCasFinder
AATCGAAAATAAGAGGTCTCTTATATTGATCCACGCAAATAGATAAGCCTTATTTTCATTTTTATATAGAATCGAAAATAAGAGGTCTCTTAT

>NZ_CP051157|8|8|748497-748589|CRISPRCasFinder
AATCGAAAATAAGAGGTCTCTTAT	ATTGATCCACGCAAATAGATAAGCCTTATTTTCATTTTTATATAG
AATCGAAAATAAGAGGTCTCTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455857.1\|754214_754772_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380315
NZ_CP051157.1\|WP_168455856.1\|753586_754114_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_CP051157.1\|WP_168456283.1\|748598_748679_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455843.1\|738492_739170_-\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377310
NZ_CP051157.1\|WP_168455844.1\|740630_741884_+\|phosphoesterase	unknown	unknown	gnl\|CDD\|365906
NZ_CP051157.1\|WP_168455841.1\|736213_737683_-\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|319755
NZ_CP051157.1\|WP_168455854.1\|752494_752866_+\|DUF3387-domain-containing-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455845.1\|741971_743354_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP051157.1\|WP_168456282.1\|739241_740324_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|238348
NZ_CP051157.1\|WP_168455847.1\|744544_746155_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455850.1\|748803_749595_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP051157.1\|WP_168455848.1\|746462_747731_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP051157.1\|WP_168455855.1\|753179_753590_-\|DUF1284-domain-containing-protein	unknown	unknown	gnl\|CDD\|377735
NZ_CP051157.1\|WP_168455840.1\|735219_736212_-\|P-type-DNA-transfer-ATPase-VirB11	unknown	unknown	gnl\|CDD\|184381
NZ_CP051157.1\|WP_168455846.1\|743667_744396_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP051157.1\|WP_168455852.1\|750378_750678_+\|ETC-complex-I-subunit	unknown	unknown	gnl\|CDD\|368126
NZ_CP051157.1\|WP_168455858.1\|754756_755533_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP051157.1\|WP_168455853.1\|750878_752456_+\|MgtE-intracellular-N-domain-protein	unknown	unknown	gnl\|CDD\|377040
NZ_CP051157.1\|WP_168455851.1\|749600_750245_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|334855
NZ_CP051157.1\|WP_168455842.1\|737699_738500_-\|P-type-conjugative-transfer-protein-VirB9	unknown	unknown	gnl\|CDD\|274296

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168455857.1\|754214_754772_+\|nitroreductase-family-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	1.29178e-69
NZ_CP051157.1\|WP_168455856.1\|753586_754114_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	7.41935e-31
NZ_CP051157.1\|WP_168455843.1\|738492_739170_-\|type-IV-secretion-system-protein	gnl\|CDD\|377310	pfam04335, VirB8, VirB8 protein. VirB8 is a bacterial virulence protein with cytoplasmic, transmembrane, and periplasmic regions. It is thought that it is a primary constituent of a DNA transporter. The periplasmic region interacts with VirB9, VirB10, and itself. This family also includes the conjugal transfer protein family TrbF, a family of proteins known to be involved in conjugal transfer. The TrbF protein is thought to compose part of the pilus required for transfer. This domain has a similar fold to the NTF2 protein.	4.6354e-48
NZ_CP051157.1\|WP_168455844.1\|740630_741884_+\|phosphoesterase	gnl\|CDD\|365906	pfam00149, Metallophos, Calcineurin-like phosphoesterase. This family includes a diverse range of phosphoesterases, including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues.	2.34778e-10
NZ_CP051157.1\|WP_168455841.1\|736213_737683_-\|TrbI/VirB10-family-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	1.67617e-47
NZ_CP051157.1\|WP_168455858.1\|754756_755533_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	7.58581e-93
NZ_CP051157.1\|WP_168455845.1\|741971_743354_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP051157.1\|WP_168456282.1\|739241_740324_-\|GTP-cyclohydrolase-II	gnl\|CDD\|238348	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (FAPy), an activity that has otherwise been reported for unrelated GTP cyclohydrolases III.	4.74459e-88
NZ_CP051157.1\|WP_168455850.1\|748803_749595_-\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.0262e-73
NZ_CP051157.1\|WP_168455848.1\|746462_747731_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP051157.1\|WP_168455855.1\|753179_753590_-\|DUF1284-domain-containing-protein	gnl\|CDD\|377735	pfam06935, DUF1284, Protein of unknown function (DUF1284). This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.	1.93269e-34
NZ_CP051157.1\|WP_168455840.1\|735219_736212_-\|P-type-DNA-transfer-ATPase-VirB11	gnl\|CDD\|184381	PRK13900, PRK13900, type IV secretion system ATPase VirB11; Provisional.	0
NZ_CP051157.1\|WP_168455846.1\|743667_744396_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.53051e-49
NZ_CP051157.1\|WP_168455852.1\|750378_750678_+\|ETC-complex-I-subunit	gnl\|CDD\|368126	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region. Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein.	1.30874e-34
NZ_CP051157.1\|WP_168455853.1\|750878_752456_+\|MgtE-intracellular-N-domain-protein	gnl\|CDD\|377040	pfam03448, MgtE_N, MgtE intracellular N domain. This domain is found at the N-terminus of eubacterial magnesium transporters of the MgtE family pfam01769. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.	4.68653e-05
NZ_CP051157.1\|WP_168455851.1\|749600_750245_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	9.11031e-33
NZ_CP051157.1\|WP_168455842.1\|737699_738500_-\|P-type-conjugative-transfer-protein-VirB9	gnl\|CDD\|274296	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system . VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein. [Cellular processes, Conjugation].	2.7129e-90

>NZ_CP051157.1|WP_168455848.1|746462_747731_-|adenylosuccinate-synthase
MNSIVIVGLQWGDEGKGKIVDYLSENADVVVRFQGGNNAGHTIVIDDEVYKLNLLPSAVLRAGKISIIGNGVALDSHALISEIESLKTRGIDVNPSNLMVSESCPLILSIHKDKEKFFEDLNGNHKIGTTNKGIGPCYEDKVGRRAIRLCDLENTDELNNRVDTLLSYHNAIRQGLGYQVAKKEELLKEVAEIAKKILPYKKPVWQVLNNFVREERKIIFEGAQGTFLDIDHGTYPFVTSSNTVGSQAMTGSGFSSSAHVIGVAKAYTTRVGNGPFPTEQENEVGDSLFAIGKELGTVSNRRRRCGWFDAVLVRQAVQLSGVLSVVLTKLDILDSFDMVKICTGYRYNGEVYDYLPASHSIQKELEPIYEEFFGWKENTQGKKSVGELPVNLIKYVKKIEELIGVPIHLISTSPKREDVIEL
>NZ_CP051157.1|WP_168455847.1|744544_746155_-|hypothetical-protein
MTTKLIENGENIVRAIQYVWNLYNYLSHSQGSNDINSIKEFKDKRIKDFALSKLIGLKDSIDKMEKENSNIKNLTITKVILSFAEKSCEDLKKLKECSERYDVIPNTTGYEEFYSQLSKVVTDYKLRILADKIRFLILLKRKNDFATVKGGYEDKWCFYDMMNDEDFKQRCISAAEEEDKSFSESFKKSMGGYIKLVEEGREIASKYFGKASFQAYCEETGNADKTLNINLINYSDSEPIKISDILQQEESIDKLNIYCNKRHDICAHRKDQKRYYEFKEGAWYQMISEWPIKDKSGRGISRCTMVMNVGSDGIAEIVEFIGKGSNGENHILSLEQDMELIKQNKELYIQDVLLCNAVEEFLRMQRSRDNSSPGAVPQNTDSNGVSEVCGEQLRPSHVVNVGGTANSGISEVCGEQLQPSHVVNVGGTANSKVSGVHKEQSNLGENNENMGHDTGNQPRHRIHLVFEIPPTDQKPLSVEIGNNSKIEKNLGADNIKIKVLIECAKGLEGVVVEGDSHSFPIPTTPTTSNKDHSLGS
>NZ_CP051157.1|WP_168455846.1|743667_744396_+|glutamine-synthetase
MIILSNLSCYAKFGIELEFYIEAIKKEHLFLSNIKNRIASLGFSCEKESSIHQYEIKSNCYINPSNLIKHFELVKRLITEIAQKLGGSVSFKAKPHLNRAGSALNVHVNLMDLNHNNLFYCSEQKYSDYLIHSIGGLCAMMKKHMLFFAPNDDSYLRFQYPDIHTPTTVSWGVNNRTAAIRIINCNGKCRLEHRVPGADCNLEKVLAAIIEGISFGIENKISPPNRVYGVASDPQYKMKSLI
>NZ_CP051157.1|WP_168455845.1|741971_743354_-|chromosomal-replication-initiator-protein-DnaA
MSLINPKVSAMFFDQIVTVTDYNIAWEKIQSCLYNLYGEATYNSWLSSLRFVSSSNGEILLSVPTRFIKEWITVHYMEKILSLWQNEDKSIRSIDIQVTEEKSSNPNIITKNKEESNHSLGSPLDSRFTFDNFVVGKPNELAFTAAKRVAESIDPIPGSNPLFLYGGVGLGKTHLMHAIAWHIVNSPSAKRKVAYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPDDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSMTVESASETLADLLRSNHKPITIAEIQKKIAEFFNIKVADMHSNRRLRGLVRPRQIAMYFAKKFTQKSLPDIGRSFGGRDHATVIHAVKQIENFIKTDSSFADEINQLKKMFK
>NZ_CP051157.1|WP_168455844.1|740630_741884_+|phosphoesterase
MNIANVFIFSVLFLITSFHSIHAQILYAWSQVIPENKLSVRAITKNDMCPIAYVDGEGVEMLNRSSINTGNHTETVCELAIETSAKNVSIDNIQVPILPEKISKIAFIGDTGCRINALFQQECNSVDSWPLKKNLDSIALHKPDLTIHIGDYHYRKTKCRNTNKCGDIYGHNKEAWYADWFDPAKDILSQSSFLFVRGNHEDCNRAYEGWFRYLDPYPLSSEKCVDCVPSWSLDAGPIRFFIFDSSSGEDIFINQSITDTFERQFDKLIQESSDKPTWFLTHKPLWRSPKKEFLTLKSHGNLTQIEAFGDKFPSNVTTIVSGHIHIAQILLMDNVPDQVIVGNGGALLHAQDQEPIYQNVGFSYPNDKHYLAHEVRNFFGFGFAILNLDDHEFTFYNQDNKEMYSTKLTEDFKLKVY
>NZ_CP051157.1|WP_168456282.1|739241_740324_-|GTP-cyclohydrolase-II
MFIGNQIRNKVERAINEIRRGLPIMIYDGSDYLLFAAADALEKDLFGQYKFISDSLYVTLTSSKVQYTLKDGESGSKRLPVNSFDELLYLVNCSTEDHIKELQCSKIIDGYATTLLKFSELLPYALVVDMTFKDKNEMQDWCEKNDIISLDTSFINHFQQDDGVYEVCKTSLFLKQTQKVSIISYRTYSGGKEHYAIIIGNPNKDGEPLVRIHSSCYTGDLLDSLSCDCRSQLHQAIQIMADSSGGIILYLMQDGRGIGLTNKLRAYDMQRKHNLDTVDANRILGFEDDERSFAVAAKILKKLDIKKIQLLTNNDRKLSELRNSGIEVTRCLPLIMERNKYNNSYMETKFGKLGHRLRVF
>NZ_CP051157.1|WP_168455843.1|738492_739170_-|type-IV-secretion-system-protein
MLKFFKQKKDSKSLDKDVNWNSNRYSMVIAQRNTLLLFTLILLVAISISILAIFKISTSSTIEPFVIEIEKKSGIVQWVDPVTVKQYSADEVLNNHFIAEYIKSREVFDPYNYNYNYYTKVRLFSSSDVYNEFRNDIKLQNMDDLLYSDFVKNEFKVRSIQKLSDGTVQVRFTVESTRKDGSFVRKNKIVIMSYRYASLKMDDQQRYVNPLGFQVTSYRVDDEYV
>NZ_CP051157.1|WP_168455842.1|737699_738500_-|P-type-conjugative-transfer-protein-VirB9
MYRTLLVLALLISGSLSASVNYSKPISIDSRIKTFVYSPNEVFTVIFSQGYYSYIEFAEGEKVKNIAVGDASSWKISPYDNKLLIMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYPNTDAEKISHDYSAEKDISYVVRFYYPQEEDEFDVDLDEISTPTQMQYVVDKPEEVIQENDTKYNYTYIEEGANADIIPIELFDDGYLTYFKFKDGNKIPQIFAEENKTKLPCKRLLFDGYVIIKGVHKKLFMRYENDEVEIINRLL
>NZ_CP051157.1|WP_168455841.1|736213_737683_-|TrbI/VirB10-family-protein
MNKEKRNNSGTESEIESKVVTVGSNQSHRALMVIILVLLVGGIYYLYFSPSSDEEDVEIVKKEETKQNVQELKEKLEKVPDDVVVHERMITDLPSLPPLSTPKVIPEVKQTKKEEAVKKEEEKPKETPVSNIPVLPKQNLPYSNVTNNLPTSLPGIGSGGYPRDRRGAQMLAISGGVEENKAADTILSNTSVQPSIATKVGKLGLMITQGKIIDAVLETAINSDLQGTLRAVVSSNVYAETGDTVLIPRGSRLIGKYSFDSNVARARINIIWNRIILPHGIDIAISSPGTDELGRAGVAGIIDNKIASALFSSILLAGVSVGSAVIAQKASNLIDVFTIMDAVRSITATEIDISPLKDIIGKRDAKNAENDKWKLGLGAIRKIKNAPDEQSLVRTFRQEVKDLRLNAIDDDGVDKITLEDIKLLLKQRGGKSVYEEAIGKSIEDFSKDMRDIVNRYTDKKPTAYVDQGTALKVFVNQDIVFPPQAILNR
>NZ_CP051157.1|WP_168455840.1|735219_736212_-|P-type-DNA-transfer-ATPase-VirB11
MNYAALDTYLEPLQGIFQEEGVNEISINSPKEVWIENRGEIRCEKLEVFDLNHLKSLGRLIAQATEQKLSEEAPLLSATLPNGYRIQIVFPPACEPDKVVMSIRKPSTMQLALDDYEKMGAFSETAIEVADNPVDRHLDLLLKQKKIKEFLEYAVINKKNIIISGGTSTGKTTFTNATLRAIPAEERIITVEDAREIVLNDHPNKVHLIASKGGQGRAKVTTQDLIEACLRLRPDRIIVGELRGAEAFSFLRAINTGHPGSISTLHADSPAMALEQIKLMVMQANLGIPPDQIIPYIRNVIDIVIQLKRTSGGKRSISEILFTRSSNENA
>NZ_CP051157.1|WP_168456283.1|748598_748679_+|hypothetical-protein
MVSFQRVTLESRKKEWIPVSATWMTL
>NZ_CP051157.1|WP_168455850.1|748803_749595_-|SDR-family-oxidoreductase
MHLFCFGYGYVAKFLSKKLLSLGWKVSGTSRNQDVQNINLFHYNKVGKDTFQDVTHVLVSIPPDGDDVLERYGYYFQNIKWLGYLSATSVYGDHAGNWVTEESETKPIESRGKSRLRSEQKWLNSKLPIHIFRLAGIYGPGRNVLIDLQLNKARNVHKAGHLFSRIHVEDIANILFSSMQNIKPGEIYNCADDLPATQSEVVAYAAKLLNVDVPKPVEISSLPDYAQSFYLGSKKVSNVKIKRDLGISLIYPSYKVGLEMLKD
>NZ_CP051157.1|WP_168455851.1|749600_750245_-|prolyl-oligopeptidase-family-serine-peptidase
MIELKGPEICASGNKKNLIVCLHGWGSSGDNFVHLAKVMSKSLPDSCFVAPNAPFEREIGDGYQWFSLEDRSEEALYNGVKNATSIVNHFIDMKLKELGLKDIELSLVGFSQGAMLAIHTALTRSQPCASVVAYSGRFLSPAKVATQIKSKPNVCVIHGNADDVVPFSSLDLAVKALKENGVNVEGHPIHGLGHIINEEGIKLGVEFIKKNFKN
>NZ_CP051157.1|WP_168455852.1|750378_750678_+|ETC-complex-I-subunit
MGTDNQMVFKIYKPTKTATQSGLGNTHFWYLKTEPDSYYIEPLMGWVGSKNPRKQIVLKFDTLEKAVSYAKKCNVKYIIEMPKEIKRIPKSYASNFTSK
>NZ_CP051157.1|WP_168455853.1|750878_752456_+|MgtE-intracellular-N-domain-protein
MSENKHVFKIVPGKQLETALEIYKGNKSGNVIRELPDIEYGDPIDKPRITEAAFIPLYGKSGEVLKLPVKFCTNVGQHSVASDIVNCIEEREGDLKAQSYNCKWKEELNKHDTNCIEYWKGYRCVVDHVNNENSFVYLNGELVNIASQRFAARETHSPHQLYWPSFLLVQPAKYQYITRDESGKYYFSDREGNIIDSPDNEVLQKSMAHCSREEAEEIINNILSNISDYILSSNAFIKFLVKGLSDEQLKTLTNSINDKQLQAIAKYLTDDQLQALVDHLTNHQLETLAQELNETKLKIIVPTLNEDQLGSLVRGLEPDQVKNLLPHLKMDQFKAFITNLDPEQFTVIVKDLAEHHLTILSKELGVDQLRALVSSLQEDQLKDLVNKLDDRQLVAIAQDLTDPSRIKVIIDSLIDPEKLQILARNMSDEQFAKLLNELSPKDLKDIIHKLPYEKVISVADQSGNKGQLDSIVRILEEKLEDQFKQNKEVIEMLKQIKEDMPYFAHNQNFTAEDGDTYPYDSSILV
>NZ_CP051157.1|WP_168455854.1|752494_752866_+|DUF3387-domain-containing-protein
MTKETQQLQKPTFVKPVFTKPTITPLFFDKKANREIDITGDVNTAEIDERTMVNVVRFKAFYDSLINNINEYNNSISSSIENGVINPLSATIDSIGAETKEIMDKIKEIEGNMPYYSPTEEIL
>NZ_CP051157.1|WP_168455855.1|753179_753590_-|DUF1284-domain-containing-protein
MIRFRPHHFMCTLAFRGYGYSQSFIKNYRKVVSKVITDPNTQIKVVGDLDSICSACPNQTRQGECTTQAKVLELDRRHMVVLGIKIGETLTWNEAIERIREKMSLEKFDYACEKCNWKPYGMCKNALLDCHLDIMR
>NZ_CP051157.1|WP_168455856.1|753586_754114_-|biotin-transporter-BioY
MFTARSINKSTLVEILSCVLLLFLTAQISIPLQPVPITLQSLGVMLIGLKFNRGTAFYSVLTYLLLGAAGLPIFADFLGGYNVFIRPVGGYLIGFLAAVIVMGKVNESLSSKCVSLMRNSLSCLAGTATIFICGVSWLAIHVGLKQAIVAGVLPFILPGLVKIFLLVAALQYLKK
>NZ_CP051157.1|WP_168455857.1|754214_754772_+|nitroreductase-family-protein
MINKQDLLALMKARHSGRLYDPNKVINQAEINMLIEAARFSPSCFGDEPWRYVICNKQNNQSSWERLLSCLDESNQKWAKNAQVLIISLSAKNFRKLDKGKNFWAKHDTGAANYALMLQAASMNLMAHQMGGFDKDKIIEKFNIPDDFNVMSVVAVGYEEEGAEVKEKKRRPIEEIFFYDEWPKP
>NZ_CP051157.1|WP_168455858.1|754756_755533_+|diaminopimelate-epimerase
MAEALRKMHGTGNNFVIIDSRLTNDLDWNYRQIADQNGCDQVIIMTRSDVADCFMHIYNANGSQAEMCGNAARCVGYLIMSEKSTEYATIELINERILECFKMDDRSIKVNMGKPLFRWHEIPLSIECNTLCLPIEVGMLKDPVAVNIGNPHIVFFVDNISEIPLQNLGPRLENHILFPKRVNVSIAQIEKSREIALRVWERGTGITASCGSAACAAFVASVLRKYLATQQALVNLPGGKLLIEWSDNIFMTGEVGFL

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Crispr_ID: NZ_CP051157_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_9

820928-821048

Orphan

Consensus_repeat	Method
GTATGTTCATCGAAGGGTGTCATTCCAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_9

>merge|NZ_CP051157|9|820928-821048|CRISPRCasFinder
GTATGTTCATCGAAGGGTGTCATTCCAGCGCGTGACGCTGGAATCCAGGCTTATTTTCATTTCTACGCAAAATCGAAAATAAGAGGTTTCGTATGTTCATCAAAGGGTGTCATTCCAGCGC

>NZ_CP051157|9|9|820928-821048|CRISPRCasFinder
GTATGTTCATCGAAGGGTGTCATTCCAGCGC	GTGACGCTGGAATCCAGGCTTATTTTCATTTCTACGCAAAATCGAAAATAAGAGGTTTC
GTATGTTCATCAAAGGGTGTCATTCCAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168455924.1\|826487_827102_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NZ_CP051157.1\|WP_168455915.1\|815638_816193_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455911.1\|809334_809748_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|214902
NZ_CP051157.1\|WP_168455923.1\|824244_826374_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP051157.1\|WP_168455922.1\|824092_824239_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456289.1\|813932_814073_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119373
NZ_CP051157.1\|WP_168455920.1\|821411_821924_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455916.1\|816324_817509_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP051157.1\|WP_168455917.1\|817512_818118_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|273579
NZ_CP051157.1\|WP_168455925.1\|828089_829094_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP051157.1\|WP_168455919.1\|821171_821357_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456288.1\|809842_810502_-\|CADD-family-putative-folate-metabolism-protein	unknown	unknown	gnl\|CDD\|275114
NZ_CP051157.1\|WP_168455912.1\|810621_812652_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP051157.1\|WP_168455921.1\|821991_822390_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP051157.1\|WP_168456290.1\|822604_823927_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP051157.1\|WP_168455927.1\|829907_830939_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP051157.1\|WP_168455913.1\|812858_813605_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP051157.1\|WP_168455918.1\|818874_820707_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168455914.1\|814127_815642_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP051157.1\|WP_168455926.1\|829196_829571_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168456289.1\|813932_814073_+\|hypothetical-protein	gnl\|CDD\|119373	cd00599, GH25_muramidase, Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.	3.04975e-10
NZ_CP051157.1\|WP_168455911.1\|809334_809748_-\|dihydroneopterin-aldolase	gnl\|CDD\|214902	smart00905, FolB, Dihydroneopterin aldolase. Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers.	1.01312e-20
NZ_CP051157.1\|WP_168455916.1\|816324_817509_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	8.38137e-79
NZ_CP051157.1\|WP_168455917.1\|817512_818118_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|273579	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis].	5.70458e-69
NZ_CP051157.1\|WP_168455925.1\|828089_829094_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.74202e-08
NZ_CP051157.1\|WP_168455924.1\|826487_827102_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	1.36419e-91
NZ_CP051157.1\|WP_168456288.1\|809842_810502_-\|CADD-family-putative-folate-metabolism-protein	gnl\|CDD\|275114	TIGR04305, TENA/THI-4_family_protein, putative folate metabolism protein, CADD family. This protein family, related to but outside the family of PqqC proteins involved in PQQ biosynthesis, includes the well-studied Chlamydia protein CADD (Chlamydia protein Associating with Death Domains), which can induce apoptosis in a host cell. Other members of this family occur in Rickettsia and Wolbachia, unrelated in terms of phylogeny (both are alphaproteobacteria) but similar in living intracellularly. Local gene context in these species, although not in Trichodesmium or Nitrosomonas eutropha, suggests a role in folate metabolism, and some species with this protein lack FolE but have other folate synthesis proteins.	1.25717e-125
NZ_CP051157.1\|WP_168455912.1\|810621_812652_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP051157.1\|WP_168455921.1\|821991_822390_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	8.11785e-23
NZ_CP051157.1\|WP_168456290.1\|822604_823927_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP051157.1\|WP_168455927.1\|829907_830939_+\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.38266e-26
NZ_CP051157.1\|WP_168455913.1\|812858_813605_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.12227e-85
NZ_CP051157.1\|WP_168455923.1\|824244_826374_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP051157.1\|WP_168455914.1\|814127_815642_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_CP051157.1\|WP_168455926.1\|829196_829571_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	7.1097e-34

>NZ_CP051157.1|WP_168455918.1|818874_820707_+|hypothetical-protein
MHDKDVESIRKLFNLYNNKQTVTHRLWNVFKCLVTINFGGALKECFVRNTVPIEEKNILLAQGLKEIVNSNDNDGRVPNYVDEFLEQKLKEKLGGYFQSFNATQNNLELEKATEFSEFQSVAEKLLEGHDDEEKEHIIEKAKTLEDIAYPLTEKYFLFRYLAKAIVCAKDSSLSAQNNYQEEKSRCLIFSRELKNFTGPSNIQDASKKFSSEHRYIDKLLQISDKVSKHSGKIAATYVAYIAAITCARYAKDDEHNEAWYKLVALPSTILAMLQIVVSCPQIIFSAKKARDIRNYVFEGKKANGAYNITTSRVADVQLLDKNIPTFSNGMVYVCAGMFRWIGNLLLQPIDLVQDDTKDLILRWSAMRWFTPTGIVEEQSKVASFVNCELRNFVYDRILTGDSAINNQHVNRIFYLLYKRIEENKKCDLKRIYETLTGTEIANFESIVSNKEKRQISKLQIWERATYFFASSTLIAEYMCFNYRKQDIGWYEDPVFYFATIVKFMRLGSLLASKYFGNKITEYLTGNKLDNNKYFQDFFYNDTARMAAAVIPLIMFESTGDVKILSIATAIDVLTTVRSDISSGKALSKLNQVSIEKLTAELDEVSNCVRL
>NZ_CP051157.1|WP_168455917.1|817512_818118_+|orotate-phosphoribosyltransferase
MTLDKGNPIIKEFEEAGAILHGHFVLSSGLHSDTYIQCAKIFENPSRAMKVCKLLAHKIKKEISSPIDLILSPAIGGIIVGYEIGRQLGIRTMFCERVNGEFELRRGFEIKKGEKILLIEDVITTGKSSLEAVECAEGKGGKVVAEAALIKRNSEAKLPFPIISLLELNIKNYSEEELPEELKQLPITKPGSREYLGNCTK
>NZ_CP051157.1|WP_168455916.1|816324_817509_+|dicarboxylate/amino-acid:cation-symporter
MHKLAILFSILLAIGAYYLNNEVIFEVAKLFSDIFISLLKLISLPLVFLSIVSTISGLKDSIAIKTLVKKTLFYTLLTTIIAAFVALSFYLLIDPVRKNFISNAIESVNDGNHNYFAYLKSLIPSNFVQVFLENNVIGSVLIAFLMGGAVISLSKEKQDILHQVFSALFDTLLKIAQGLLKFIPLAVWSFITCFLHELKSGSEFYSLLWYFTCIMSANFVQAFLVLPLLMWYKGISPIQTLKGVMPALTLAFFSKSSSATLPTTINCVQNKLKVPKKLSSFILPICTTINMNACAAFILITVMFVAEMNGHTFSLSEMFIWIFLATGAAIGNAGVPMGCYFMATSYLVSMNVPLYIMGLILPIYTIIDMCETAINVWSDVCVTQIINKEYKDEI
>NZ_CP051157.1|WP_168455915.1|815638_816193_-|hypothetical-protein
MSRETLEVITFFAGVTLAVGGTIGCITGLIGSALGFTAFLPIVLGSAIIASAALSSTLIFWLLFTLYQAGHEELLGSWSLSHISSIAIGVGLAASVNTVSLGAMSTIGIGIIIGIGIPLLACVAGEFIKATVEVVKEHFSSQEKNDNCTTSDPNVNGRQPSNTLESVDPSEIKGEDKNLVAAKT
>NZ_CP051157.1|WP_168455914.1|814127_815642_+|protein-translocase-subunit-SecD
MRNRLIIKSFSVLSILLLALYIILPNFFDNKLLVSKKRINLGLDLKGGSSLLLNVDLDSYFKEKLSMLADEIRESLPTKNIQSSVEGNKQVVVTLNNIDDHKKVSTLVHKINPNLELNRKDASIFISYKPHYKSSLINEVVSESISNVQRRLDKLGTKEVSVQKQGQDKILVQVPGVEDTEQIKSLLGKTAKLAFHLANTNVAKMQDIDHETTVILKDSLGNSYPIFRKTEIGGDSLVNASVRFGQLGKPSVHFKFDSIASKRFAKITKENVGKPFAIILDNTVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEESIKAGEIAAMISIVAVALFIIVTYGKLGILASVALLFNVISILLILTLLEATLTLPGIAGIALTVGMSVDANVLIFERIREEMKLGKRTVRAIEEGFKNAIKTILDSNLTTLIAAGIMFAIGSGAIRGFSVTLSIGILCSMFSAITVTKLLIELCVDPKKLVL
>NZ_CP051157.1|WP_168456289.1|813932_814073_+|hypothetical-protein
MLSIIHKATQGKNYIDPEYAKRRKASEEGGLMWEAYHFGTREDGRQ
>NZ_CP051157.1|WP_168455913.1|812858_813605_+|5'/3'-nucleotidase-SurE
MIILITNDDGFESEGIKLLKEVAQNFASEIWVVAPDTDRSGAARSLDYPIRQSIRVNQRGEREFSVSGTPADCVIIALNKIMNKKPDLVLSGVNIGSNVGDDVCYSGTIGAVMESAARSIPSIALSQVYHNGMIHWHNTKVFAPKIIAKLVEIGWPKNIAMSVNFPATEKVKGVEFAEQGEYNIDGDLTFTENFDGSLSLNWSREHSGSGSVGKIKEGFITITPIKLDFTDYDTLNAMKNSHADKFFP
>NZ_CP051157.1|WP_168455912.1|810621_812652_-|NAD-dependent-DNA-ligase-LigA
MTNLEDLRRELAELQMKMSYHDVLYHQKNKPEITDAEYDELKRKAAEIEAQLPETDVTQNGVGAAPDERFSKVEHQEPMLSLENAYDEEGVERFLSKIKRFLIEDEIEILCEPKIDGLSFSAIYEDGRFVRAATRGDGFIGEDVTHNVATIKGFPRVLPGVKGRLEVRGEIYISNSDFLKLNENNEFANPRNAAAGSLKQLDANVTASRPLRYFAYSLIGGTEKSQSEVLERLEELGFCVNEHRFLTSSLNGMLKFYNEIYDCRYNLDYDIDGIVYKVNDLVLQNRLGSTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKRKDIREGDVVTIKRAGDVIPQIVRVDKGSRHTDAPEFVFPEVCPECGSKVQIEGVAIRCPEEFTCRAQIIEKLKHFVSKDAFDIVGLGEKQIKFFYDLGLVKQIPDIFTLEEKLNEFNLEEQSGWGEKSITNLLNAIQSRKVITLDRFIFSLGIRFIGQVAAALLVNYYVSYDNWYSSMIKLLSDDAEIDGAEKKAAKSFSDELVGIDGIGDKAAKSLESFFSKEHNTKMLKDLTDYLQILPVSSNSSDSILNNKVIVFTGKLLTMSRGEAKVRAKALGAKVSSNLSAKTDYLVSGEKPGTKYKKAVELGVKILDEEQWYSMIS
>NZ_CP051157.1|WP_168456288.1|809842_810502_-|CADD-family-putative-folate-metabolism-protein
MTFVQLLNKELDDLHLLKHQFYQSWNEGNLSLEALQVYAKEYYHHVAAFPRYISSIHSLCPNLKMRQVLLGNLVEEEQGDENHPELWQRFAEGLGVSRSDLREDAQIKETQELVDGYFDIVRSGFAMGLGALHAYERQTPEVSKSKIDGLKKHYSINDERSLQFFTVHMHADEWHSEECANLIADLNEEEQGKVMQGAKKGAKLLWGFLDGMMNAYAHC
>NZ_CP051157.1|WP_168455911.1|809334_809748_-|dihydroneopterin-aldolase
MGLGTKPLCNLLIQDLRLWVHLGCSTEEKFHSQLVSINVDFIFKSPPVGFITDRLEDTVCYLEVVQSIKSLAQSKQFNLIEHFTHDVYITISNLLMQKRHIISSIRVTAHKVAPPVPDVHGGVLFTYSNALQEQEDT
>NZ_CP051157.1|WP_168455919.1|821171_821357_+|hypothetical-protein
MKKEWIPVSSTGMTKKGHWDDIVEATWMTPLLLQYSHISHVPKQIQTYTNICLIRRRDYVY
>NZ_CP051157.1|WP_168455920.1|821411_821924_+|hypothetical-protein
MNIFVLDENPVIAAQMLCDKHIVKMPLETAQLLSNVFSTALKVPNLFVSITDQNITVPYKLTHNSHPCSLWARKSKGNFYWLIEYGKELCKEYTWRYKRKHKSEEVIDWCDSNKDLLIFQSADMQPFVQALPDRYKCSNPIKAYREYYLQEKMRFAKWEKGRKAPDWAIV
>NZ_CP051157.1|WP_168455921.1|821991_822390_-|GFA-family-protein
MKNEEKKQIQEYEGGCLCDNTTFIARGEPSNPHLCSCTICRKSSGAPTIAWVEFPSKNFEWTKSQPSLYRSSERAQRYFCKQCGSLLGVIAEGYENIIITIASLKDPNVIVPNENHSYKESAPSWWGVHIKR
>NZ_CP051157.1|WP_168456290.1|822604_823927_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MKGLYIKTYGCQMNVYDSILMENIIKPLGFSVVGDAEKADLVILNTCHIREKAAEKLYSELGKIHSSQKNKDTTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRSKGHAINTDFPEVAKFDKLPDECYGNSQGSSAFLSIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREALKLVENGAKEINLLGQNVNAYHGECEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMHESLYLAHAEEPKLMPFIHLPVQSGSNKILRAMNRKHTAEEYLEIIARLRNLKPEIEFSSDFIVGFPGETEKDFEETVKLVEQVRYAQAYSFKYSPRPGTPGAERKDQIPEEVKTERLLRLQKVISTQQLEFNQNMVGKTIPVLFGAKKGKHQNQIIGKSPYMQSVCINDHEGKYRNKIVNVKVLEAWQNSLLGCSA
>NZ_CP051157.1|WP_168455922.1|824092_824239_-|hypothetical-protein
MHNKLIVGSTPGMYLTEMKKLLGKLWQFHYRSNKVISDSKLVFDLQAQ
>NZ_CP051157.1|WP_168455923.1|824244_826374_-|transketolase
MDHLPLESMANAIRFLSIDAVKKANSGHPGMPLGMADVATVLFAKYINHNPDDSKWFNRDRFVLSNGHGSMLLYSILYLTGYINIDELKNFRQLTSKTPGHPEFGLTPGVEATTGPLGQGFANAVGMALAESILEKQFGISHYTYVVLGDGCLMEGISHEAASLAGHLKLNKLIALFDDNDISIDGATSLSCSDDVEKRFSAYGWNVNKIDGHDFNSISLAIEQAQKSDKPSLICCKTIIGKFSSLAGTSSAHSGAFTEEDIKTMREKLNWNYEPFHVPEDVKNAWMKTVERAKQNYSSVSLTSENKELHRRLDESAPDSVSFQCLTLESRKEGKEWIPVSATRMTRESIVMTKSETGITEEFQRKLNKRLPDNIAGVLADLKKQICELMPNEATRSSFGMVMELLTQHVPELIGGSADLTGSNCTKYKHMKIINRDYYNGSYMHYGVREHAMAACMNGMALHGGILPYGGTFLVFSDYCRPAIRLSALMKQQVIYVMTHDSIGVGEDGPTHQPIEHLASLRAIPNLYVFRPADAAETLECVSVALEKKEAPALFALSRQNVNYMRKFHFDAHQSANLSKFGAYILCECSEKLEVTIFATGSEVEIAIEAREKLQEKGIGTRVVSMPCWRLFDEQSDEYKASILNNDSIKVAIEAGSEMGWHKYIGLNGIFIGMKSFGESAPYKTLYEHFNINADHVVKCVCEKLICAQ
>NZ_CP051157.1|WP_168455924.1|826487_827102_+|30S-ribosomal-protein-S4
MTTVINRKYRISRRLGINLWGRAKDPVNKRKYPPGQHGILGFKRLSDFGKQFAAHKKFKFYYAISSKQLRRIFLDAYNRKGYTADNFIGILESRLSSVLYHSGLAPTIYSAKQLISHKHVTVNDKVVNISSYRVKPGDIVKIRERATKIPVVIEAAEKQERKIPDYLETNNKEHSVKYLRVPQYSEVPYSADMEVNLVVEFYSR
>NZ_CP051157.1|WP_168455925.1|828089_829094_+|RDD-family-protein
MNVKASYVEITKRVAAGVVDQIIYLSFYLLVFSILFILSGKPLIEFFDYISSDTTSVPLQEEVLGSLLCMALMIVLETLMIIMFGSTPGKLLIGIRIKNAVTFDSAALTEIVIRSTLKVLLLLPSFISDWFLILPILVLVFARFDKHKRTFYDKITRTAVIDCKPGKLHLNLNCTGIIKRAYVWSSDLAIIRLISRLFYLFVKITFGLNDIKPFSCLWFLPWVLLSIIFGVFMVRRYGGTPGQLLWDIRIKDASTLENITLLQAIVRHIFCLMFVASCIVTLKEFFDKPISEWLSEPFPILPFVVIILIFISAVFDRHKRLFYDIIVNTVAIRH
>NZ_CP051157.1|WP_168455926.1|829196_829571_+|Hsp20/alpha-crystallin-family-protein
MFGDSFMGLGTELFTKGSGKLPACGFYETEENYCLSLKLPGISKEDVNISLSGNNLIVKGEKKHNNESESEQHYHRERYYGSFYRSVQLPANVDQDKISANFSDGVLNISIPKSEKQIKKIDIK
>NZ_CP051157.1|WP_168455927.1|829907_830939_+|hypothetical-protein
MSNEKSIALLNAIHNNTGDIELIQRLIREGADVNFRDIAGNVPLILAVQNGNKKVVDILLASPEIDVNVQDNGRQTPLHWAAKNLDATKALELVKALLDKGANVNIEDMHQDTPLHFATREGYENIVKELLEVKEICVNTKNIFGYTPLHLAANRGYLEIVKKLIKKGAYFDIENEDGDTPLDLSTEYQAVYDFLSKIKQLFVAVKEGNSTEVNDLIKQDIYINARNKDRQTPLNLATDEEIKVLLRSKRDVDNNLTNKRLTQSIDNDDIQLQQDSSKESQHPMKHAIKASSNEQLAPSTSGFILWSFWSDTGRTGENVHQSYIPLVKLNIYDYDSQNDLHLF

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Crispr_ID: NZ_CP051157_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_10

1159273-1159366

Orphan

Consensus_repeat	Method
AATCGAAAATAAGAGGTCTCTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051157_10

>merge|NZ_CP051157|10|1159273-1159366|CRISPRCasFinder
AATCGAAAATAAGAGGTCTCTTATGTTCATCCACGCAAATAAGGTAAGCCTTATTTTCATTTTTATACAGAATCGAAAATAAGAGGTTTCTTAT

>NZ_CP051157|10|10|1159273-1159366|CRISPRCasFinder
AATCGAAAATAAGAGGTCTCTTAT	GTTCATCCACGCAAATAAGGTAAGCCTTATTTTCATTTTTATACAG
AATCGAAAATAAGAGGTTTCTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168456195.1\|1167672_1168695_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP051157.1\|WP_168456194.1\|1166728_1167595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456192.1\|1164905_1165460_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP051157.1\|WP_168456181.1\|1149235_1149607_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456312.1\|1156818_1157208_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456197.1\|1170351_1171386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456180.1\|1146501_1149159_-\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP051157.1\|WP_168456313.1\|1168691_1169399_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456193.1\|1165557_1166718_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|273942
NZ_CP051157.1\|WP_168456190.1\|1162218_1163394_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456184.1\|1152972_1154316_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|100091
NZ_CP051157.1\|WP_168456185.1\|1157415_1158240_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP051157.1\|WP_168456183.1\|1151749_1152970_+\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|226414
NZ_CP051157.1\|WP_168456311.1\|1149799_1151029_+\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP051157.1\|WP_168456182.1\|1151021_1151753_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456189.1\|1159514_1162049_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP051157.1\|WP_168456191.1\|1163413_1164904_-\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NZ_CP051157.1\|WP_168456179.1\|1145286_1146288_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456196.1\|1169632_1170052_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP051157.1\|WP_168456186.1\|1158250_1159000_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168456195.1\|1167672_1168695_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.92462e-146
NZ_CP051157.1\|WP_168456189.1\|1159514_1162049_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP051157.1\|WP_168456180.1\|1146501_1149159_-\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP051157.1\|WP_168456193.1\|1165557_1166718_+\|glutamate--cysteine-ligase	gnl\|CDD\|273942	TIGR02049, putative_gamma-glutamylcysteine_synthetase, glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NZ_CP051157.1\|WP_168456184.1\|1152972_1154316_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	4.00446e-174
NZ_CP051157.1\|WP_168456185.1\|1157415_1158240_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.42582e-40
NZ_CP051157.1\|WP_168456183.1\|1151749_1152970_+\|heme-biosynthesis-protein-HemY	gnl\|CDD\|226414	COG3898, COG3898, Uncharacterized membrane-bound protein [Function unknown].	5.70615e-09
NZ_CP051157.1\|WP_168456311.1\|1149799_1151029_+\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	1.59889e-177
NZ_CP051157.1\|WP_168456192.1\|1164905_1165460_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	9.38391e-119
NZ_CP051157.1\|WP_168456191.1\|1163413_1164904_-\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP051157.1\|WP_168456196.1\|1169632_1170052_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	3.2577e-88
NZ_CP051157.1\|WP_168456186.1\|1158250_1159000_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.57466e-54

>NZ_CP051157.1|WP_168456186.1|1158250_1159000_+|SDR-family-oxidoreductase
MGKLEGKIALINGASGGIGSAVAKRFVREGAYVILISRSIDHLKPLYNEIEELEEFKEGSVKLIQLDLLDFENVQILANMIESLKLSESGALDILVACTGILGKLSPVHECELEELQNIMNTNFTANWYLLKNLDPVLKKSNSGRVVFMTSEVTLSPSSYPYWAPYAASKAALEIIVKIYASETKHTKLCVNAVYPEGPVDSEMYKQAFPGKDTPELVLPDKLTDKFVELTSEDCDISGQVLPLSKSLE
>NZ_CP051157.1|WP_168456185.1|1157415_1158240_+|YihY/virulence-factor-BrkB-family-protein
MNKLLQKFYSIIYCLYRALIDTIYNDGMEHAGYLSFLILLSIFPFLIVLMALASTFASFLDQYNIGWTSIIDNMPQDILASLMPRIKEIISGPPHSLLTLAILGAIWTASSTVEGLRTILNKAYKVPVSPPYVLRRILSILQFLVITFIITLTIIFSTLVPMLIGFSYHGLSYTKYLLVEFVLFLVVSWLYFMLPNIKQNLSDVFPGSCVAVMLWTLSASVFKQYLRASFGQLDLIYGSLGGIVVSLLFFYVVSLIFIYGAKFNFQLKYSNGFC
>NZ_CP051157.1|WP_168456312.1|1156818_1157208_+|hypothetical-protein
MPETRDQDTQAVDKSSNKIVSGLRQENKNLTRDKQTISEQLKQKVREIEELKERLKKSQEENKQLKQKVTKGTGVDASSSTDQEETKEMEVQTDVQVSNFHDLYDKEGRYVRTELSDPNLTPNDPEKSR
>NZ_CP051157.1|WP_168456184.1|1152972_1154316_-|phosphomannomutase/phosphoglucomutase
MDNTIIRKYDIRGVVGKDLQIDDGYEIGRKVGQTVSSVCIGYDSRIDSPSIEKELIRGLTLSGANVIRVGLCSSPMLYTATQITQADLGIMITASHNPSKYNGFKFFSSKKVYSDQEIKEVISNPIKSSMKIGSLININIYSEYILILKSALKNNTTQKLKIAWDLGNSPVSGIARYIEKILPGHTHIVTNNSIDGTFPLHDPDPIEEKNLAQLIDIVKKNECDLGIALDGDSDRVRLIDNQGNVVSNDHLFMIFAREVLEEYPQSKVIANIKMSMKAHDFVSKLGGQVITCATGHSLVKKKMLEEEAEFAGELSGHFFFSELGFDDGLYSAVKAIDILLKTNQSLYQIIEDLPKLYITHEVKIVVQDEKKFQIIESIKKTLEQQSIAFSELDGIKVTNNDNKGWWLLRVSNTQNCITARCEGNTLEDFELTKKVLFYYIDKARSLN
>NZ_CP051157.1|WP_168456183.1|1151749_1152970_+|heme-biosynthesis-protein-HemY
MIYLIIFILSFLFGIWIKVSGEVVRLELGSYTVNIDLYFIIFTCVFLLFLLIILTRFYSSISSTFTNIRNRRRDKKELLLFEAFFSMDLGNMENAHKLVKNLNEESDKLSLIKLFNAAKTGNYSFFSHGLINIANKNLNLALLLANKLIIDLKQEKAIFQKFIEYCSSSIDNKILSIPFQIEHCILQEDWACAILKLKEAVKFNIFLPFDCKKMLAVLYCALAKQYESKENYKEAIKSLFRAQSYCATFQPINYLKAELYIRLGKIRKASAVLETEYTVNPTSQLAKIYISLNSKGAERLCNLRPDYYFSYCLLASSSISLGRYDLASQHLDNAMKKANYVSIYLIMVQLKVVLQEYDQVIYWLNKMDSEALPEPCWKCTNCSQKLKQWDYKCSSCNSFNCVCYSQ
>NZ_CP051157.1|WP_168456182.1|1151021_1151753_+|hypothetical-protein
MNDIQRQCIGWFLIALLFASYIAINNIVFLKVNRQESGNNIKTLTENIDELRMLLEVNQSRIEKKIFDLKRSLHTQCEQSDGNLRQKNLAKLLLLVVKMKNSLLQEAKFDNHINAIKPLISELDDPEVENALNELENLKEIDTLPELKLSFEKTIDTINYNKSTLFQKVISNWVKIKDKNDPLRIKLAEIEESINDNDWQSIATIAGDLTHQEFKPWLNKLNCFTAASKNISTIYYYLLQYIS
>NZ_CP051157.1|WP_168456311.1|1149799_1151029_+|lipoprotein-releasing-ABC-transporter-permease-subunit
MSIAFEVTMAIRYLRAKNARFCSIMTLFSIIGIALGVATLIVVMSVMNGFRAKLLDSILGIDGHINVYFDKNVNSDYYAVSKSIEKIPGVLKATPMTNDQVIVTANGRIVGAVVRGMSAKDLLNNTTVTNNVIVGNVKKFDEGIIIGARLAEALNIDCGDKIVLISPEGFDALFDEMPKMKEYEVVAIFDMGMFEYDNTLMYMPIKSAQAFFNYKDSIRNIEVFVDDITKANELANAIEKETGMEAESWQSQQSHYFNALKTERNVMFLILTLIIIVAAFNIVSNLMMIVQEKKSAIAIMRTFGATTGSIMRIFCTCGLLIGFTGTCLGSIVGVIFSLNIENIRVFLENVANVKLFDPMVYFFSSLPVILVPQDVVNVSALALFLSFLATIAPALQAAAQDPAEILRYE
>NZ_CP051157.1|WP_168456181.1|1149235_1149607_-|hypothetical-protein
MRLLLKSGADPGLKDKDDKRPIGRVSPCSDSGKPFNSKKTFWLGAAALLATAGSIALASGVADAYIGEVWCSVLAAVIAIIALCCVCCAAKTRLPPSGPSSVLYETSEEFSNSQKLLSPTVGA
>NZ_CP051157.1|WP_168456180.1|1146501_1149159_-|2-oxoglutarate-dehydrogenase-E1-component
MSNLSCLYGDNAEFVEEMYSRYLQGDKSIGEDWYRIFSSNLETSQAKPCSVQRAAKADNSASDLANFFRSYGHFFADLNPLSPNVNKEIDYQKYSNLSPTHDAGIYRDIYCKNIGFEFMHISSYEERVWLQEKIENQTYTLSSQDKKEILRHLIESEMFEQFLHMKFPGYKRFSIEGGESTIVAIEKVISDSAAFGIEEVVLGMAHRGRLSVLTKVMGKEYAAMLSEFQGNLAYPSGLEVSGDVKYHLGYSSDRTLTGGKKIHLSLCPNPSHLEAVNPVLVGRIRAKQNMRSVLGISIHGDAAFIGQGVVAETLTLSNIEGYKVDGIVHIVINNQIGFTASPCCARSSFYCTDVTKSIEAPVFHVNGDNPEAVSFVASLAMEYRQKFKKDVVIDIICYRKYGHNEGDEPNFTQPLMYKVISKHKTPGTLYEEKLTAEQVLSSDEVSKLRSEFRSKLGKSLVESAVYTPKKADWFGGVWSKLRRAKLNDLSEYYTDSGVSLDELKKLGVHINSNIPSSFNINNKVRKILDGRIGSINSGHDIDWATAESLAFASLLTEGIGVRLSGQDSGRGTFSHRHSRLVDQVTEEAFIPLSNINEKQAHFEVIDSALSEYAVMGFEYGYSLDSPYSLVLWEGQFGDFANGAQIMIDQFIASAETKWLRSSGLVLLLPHGYEGQGPEHSSARIERFLQLCAEDNMQVVNCSTPANYFHVLRRQIHRDFRKPLVVFTPKSLLRHKRAVSNLSDFEGKFLTVIPEYRTDLVSDDKIRKAIICSGKVYYDIIEACERQKVNDIAVIRLEQFYPFPADKLSIELEKYENAEIVWCQEEPKNMGGWFFVNPLIEEVLSNLNIQTKRPKCIARPAAASPACGYASVHTQQQEEILRRVVS
>NZ_CP051157.1|WP_168456179.1|1145286_1146288_-|hypothetical-protein
MTAISTSQTKKSSNQATGKDKEIFEKEEHQLIYCTFLDTLEDPKKQIQKIREKLQKKLPKKQEQELQSKLESLGKLSCQLENEDEKKVVTFVFENNVKIFDNVNQKIKSLSEENFCQFLLSVFGKIREKNLASKENLENGEIEKVVKECVDNIRDTEAKDSLKKLVGWPLGIKIDPKNFSGSLKDGILKKVPLLGKKEEEDERPLSDEEMVTKFLGRVFLPILFSIVSISVFGPTIPAMIAAVVGVIFAVKGGIEVLFLNNKLGAFYSPDTKEWGKEISSGISNVLESKVNGIDESKQPNGKGAEQLIDPSTKLKGAGQEDLLLPQRTNTPSL
>NZ_CP051157.1|WP_168456189.1|1159514_1162049_-|DNA-polymerase-I
MKEKTFTIIDGYGFLFRAYYVLHHLTTTTGIPIGGVYGFLKMVLKYIVHSDYLTIAFDSGKKNFRHTLYSEYKANRVTPPEDLIPQFAILREAVEAFSLSYEEIEGYEADDIIATLAAKYANQQDFKVVIASSDKDLFQLLNYNVLIFDPIKDMYIDEKQVVEKFGVNSDKLLDLFSLTGDTSDNIPGVPGIGPKTAAKLLDEFGSLNNILENINNIEQTRVRNILTEHKEKALISRKLLSLCEKVDLQHDIEKYEVHPPNMEKLLGFLKKYEFNSLIGKVEQLFSYSKSSKKKKTEYNSEELEKFLEHCRYEGKIAIYCHFEDDVISKISLSYSKDSIFYISQDYLQNAVIAINSTLLSNGVLKVIHDVRKVREIFPAIEKVLGSVDDLMTMSYSLDTGKHDHSISNIIAHNLSGDVGTFSAKTLIAVHEKLTQRLFQEKLFTIYERFDKPLTEVILNMEKNGILLNIQKLQELSGKFQQLLAVLEDDIHNLAGERFNIASPKQLSDVLFNKMGLNKKKKLKSGSYSTNSEVLEELGMEGVEIASKILDWRHLSKLKGTYTDALVKRVDPIDGRVHTNFSTTATGRLSSSNPNLQNIPIRSEEGNFIRQAFIAPKGYKIISADYSQIELRLLAHIANVAAFKEAFANGQDVHNITARQVFGVQEGIEVDRQLRQKAKSINFGIIYGISPFGLARRFKITIEEAAEYINYYFSCYPEIKIYMEKAMSIARQHGYVETLFGRRCFVKDIHNTITYLRQFAERAAINAPVQGTAADIIKRAMIQLYDQLKGGKIILQVHDELLVEVEDDKVQETAKLVKDIMENAVKISIPFEVEVKISDNWGTTV
>NZ_CP051157.1|WP_168456190.1|1162218_1163394_+|hypothetical-protein
MSKKTEKARHKLSKSDISSPIIPNPAPITSEVRPIKVRREAKTNNLISEKGRAHSLSTFSTDSDAVSISSDSGISSSFSTTSDSEVFDTNSISSDSGTPSGRITPTASVAEDIPQSKSANGRKPPVLGKLKKVSIPEVPKDFVLSKKKSPQMKSKPQQPQKAVEQIVSLDDQIKALQNRQNNLQQKLTKLNQQSRLFIFIKSKEHRTKERELNSQLAEVTKAKWKVELDRKFESDKDLEISDFADRSCDASNSNNKYLEGINKVIKKHPSLYVHYTCKDPNDFLNSRSFVYKSLQEILERANPTYEDKQILLRYDAYQVKTLLQSGDITDKEDKKALKEIYKDLKNEMSKSRKSFDAKNDQYICKLRKGRGTSPDSIMKSVQTSQQLQHSR
>NZ_CP051157.1|WP_168456191.1|1163413_1164904_-|ATP-dependent-protease-ATPase-subunit-HslU
MSSERKILFTNFSDQSMTLSEGQSCDSNTHNKKNDLCKDTKSSCDSNNKNARANNSTQVLLDDLPPQKIVKELDRFIIGQNDAKRAVAIALRNRWRRNKVPLPLRDEIIPKNILMIGHTGVGKTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSIIRDLVDAAMVLVKEKARKALAKKALDLAEKTIVDSMVGESASEESKKIFRERLRNKEFENGEVSINVRESKGVLPAFDIPGMPGGQVGIVNVTELMGKMFNGGKKTKTITVKVKEAREILINEESERLMDENKIIKKAIDLVTNEGIVFLDEIDKIAARTEVKGEVNREGVQRDLLPLLEGTTVSTKYGHVKTDHILFIASGAFHLSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVILEFTNDGIETIAEIAFTVNREVENIGARRLHTVMEKLLDEISFIASENSGEKFVIDGKYVKDKLQSISKQLDLSKFIL
>NZ_CP051157.1|WP_168456192.1|1164905_1165460_-|ATP-dependent-protease-subunit-HslV
MIRHDNDKIYGTTILSIRRGKNVVVVGDGQVSLGHTVIKSGAKKVRRLSGDSVIAGFAGATADAFTLFERLESKLDKHPGQLMRACVELAKDWRMDKYLRKLEAMMIVADKSISLVITGTGDVLEPEDGIAAIGSGGNFALSAARALIDVEGISIEEVARRAMKIAADICVYTNHNVVIEKIEG
>NZ_CP051157.1|WP_168456193.1|1165557_1166718_+|glutamate--cysteine-ligase
MQNIIHPNLEKNINDWFETKFNGFTLPFYSSVDLRNSGYKIAPIDANLFPAGFNNLSELSKTTAAKLVRSYFEKKRYKKILVIPENYTRNKIYIENVFAIEKILQLAGFETKTGLFHNEAYNSIEPYETVVKENSLLKTTSGFVPDVIVLNRDMTSHIPSVLENVKQEIVPSPLYGWHSRQKFKHFEIYQELASEFCSEFEIDPWLISVFTKSCNEVNFSDHSSRETVATKVNQVLSLIHKKYEEYEIKTQPYVFIKASNGTYGMGIITATSGDEILNLNKKKRHKMKKVKEGIKINSVIVQEGIPTIDVFERSPAEPLIYYIGNTPTCYLYRCNSRKTIYSSLNATDCEFHDISQVIENKTLSLWNVVSKLAVLALAVEMRSFHI
>NZ_CP051157.1|WP_168456194.1|1166728_1167595_-|hypothetical-protein
MLNELKKKPSTFAQKVHDAYNHDTRRIICITTGLTALLCKISLQFCCEFIDNNSSNIYLIREIARWVKFPTSILYITHSAFALHDLIKDYRNPNGKKELVKIVGKSASLASSSIEALMMLKVFHFLTGSNASAISHIHLTSTILFLFIAEPISYYYTYKKYQEAHKEYQDACRKGVKDAGELTKCEAELAKRKKSLVISTLTLSLGLLNFILRRIEIVTTPINLGNGIIYDFNLSVTVGIIYSAVFLAIQLDKLVNQPINDDPSTELDNANHAQHVDCGNNLYNGPAM
>NZ_CP051157.1|WP_168456195.1|1167672_1168695_-|ferrochelatase
MKKAIVLLNLGGPDSPNAVRPFLFNLFYDKRIINLPNPFRFLLAKFISAKREDTARKIYEQIGGKSPILENTKMQAEALEQELNKSVFCHPSSMELGSRKKNWIPASRAGMTQELARVFVCMRYWHPFANEVVESVKQFDPDEVILLPLYPQYSTTTTLSSIENWQKSAKKYGLKCNTKIINHYHNNQDFIEAHVNLTAQYYKLASRIGNPRILFSAHSLPLSVIEKGDPYALQIEETVKLIVERLNIKDLDWSICYQSKIGPVKWLEPSTEKELLRAKAEDIPVVLSPISFVSEHSETLVELDMEYKAIIKDGYYFRVPTLSTNSLFIKCLADLCRNCP
>NZ_CP051157.1|WP_168456313.1|1168691_1169399_-|hypothetical-protein
MFCGTKGFLTFSLAFLSYLEYSSRHNTKLKEGAAFAMKRNTIPFFEMAIITPFVCFALPAMIGIMSLMQCALVCAALMITTCFVVRTFHLREKLMEKTTDYSRETIDREFKKDTIKFPIFDKNREHIGYNSPNQEQSPNEASSFSFLRVLLFPLKVLLKVLQSCIMLALAAIELLEAVPSFCADLIFDRSFVSTQSSLQRSGHLLYASVRNLVPISVLDECVANFIGTPEATCCK
>NZ_CP051157.1|WP_168456196.1|1169632_1170052_+|nucleoside-diphosphate-kinase
MAIERTLSILKPDAVRNNITGNINSYIEKSGLKIIAQKMMLLTRRQAELFYEIHKDRPFFGELVEFMTSGSVIVQVLVGENAVSKYRQIMGATNPKQADKGTIRGDFADDISENRVHGSDSLENARREIAFFFAECELV
>NZ_CP051157.1|WP_168456197.1|1170351_1171386_-|hypothetical-protein
MVNLKSAIKENISYDLKGNELTAQDKARTLKLAKIIEEGESIAASFRPRIFSLNYDTNKILKTKITYEGEEFTLLHHAIYHKNNGAVKDLLKKAKDKGLLKAVLNEEVIIKCSDGKVEKHDPFSYAESCENGEAKDAILRAAQDGKILGDILKPNKEPILSNTTTATEEPKDTYTLEDIEEALGECKEVLDVENPSNNAVDQDADADAEIESCKNVSQDSESPQSEHKNSKDNQNTLKKQKSSIPKSLSSELYSESYTENSQGEKSPKNLPQSIAAGVVGAGLLASCITLYIMKMPVVAVALGIVGLTCAGFALYNLLKPKTKFEEMKDVKQHTAQPLRSFLCC

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Crispr_ID: NZ_CP051157_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051157_11

1162416-1162585

Orphan

Consensus_repeat	Method
ATCAATATCAAGTGATAGTGGAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP051157_11

>merge|NZ_CP051157|11|1162416-1162585|CRISPRCasFinder
ATCAATATCAAGTGATAGTGGAATATCGTCAAGCTTCAGCACAACAAGCGACAGCGAAGTATTTGATACAAATTCAATATCAAGTGATAGTGGAACACCGTCTGGTCGGATAACACCAACTGCCTCGGTAGCAGAAGACATCCCTCAATCAAAATCAGCAAATGGTAGAA

>NZ_CP051157|11|11|1162416-1162585|CRISPRCasFinder
ATCAATATCAAGTGATAGTGGAA	TATCGTCAAGCTTCAGCACAACAAGCGACAGCGAAGTATTTGATACAAA
TTCAATATCAAGTGATAGTGGAA	CACCGTCTGGTCGGATAACACCAACTGCCTCGGTAGCAGAAGACATCCCTCA
ATCAAAATCAGCAAATGGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051157.1\|WP_168456195.1\|1167672_1168695_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP051157.1\|WP_168456194.1\|1166728_1167595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456313.1\|1168691_1169399_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456189.1\|1159514_1162049_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP051157.1\|WP_168456197.1\|1170351_1171386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456186.1\|1158250_1159000_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP051157.1\|WP_168456311.1\|1149799_1151029_+\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP051157.1\|WP_168456198.1\|1171719_1172265_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456193.1\|1165557_1166718_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|273942
NZ_CP051157.1\|WP_168456199.1\|1172846_1173143_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456192.1\|1164905_1165460_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP051157.1\|WP_168456184.1\|1152972_1154316_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|100091
NZ_CP051157.1\|WP_168456185.1\|1157415_1158240_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP051157.1\|WP_168456183.1\|1151749_1152970_+\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|226414
NZ_CP051157.1\|WP_168456187.1\|1159143_1159332_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456182.1\|1151021_1151753_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456312.1\|1156818_1157208_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456191.1\|1163413_1164904_-\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NZ_CP051157.1\|WP_168456188.1\|1159334_1159490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051157.1\|WP_168456196.1\|1169632_1170052_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085

Protein	Function_ID	Function_description	E-value
NZ_CP051157.1\|WP_168456195.1\|1167672_1168695_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.92462e-146
NZ_CP051157.1\|WP_168456184.1\|1152972_1154316_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	4.00446e-174
NZ_CP051157.1\|WP_168456185.1\|1157415_1158240_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.42582e-40
NZ_CP051157.1\|WP_168456189.1\|1159514_1162049_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP051157.1\|WP_168456183.1\|1151749_1152970_+\|heme-biosynthesis-protein-HemY	gnl\|CDD\|226414	COG3898, COG3898, Uncharacterized membrane-bound protein [Function unknown].	5.70615e-09
NZ_CP051157.1\|WP_168456311.1\|1149799_1151029_+\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	1.59889e-177
NZ_CP051157.1\|WP_168456192.1\|1164905_1165460_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	9.38391e-119
NZ_CP051157.1\|WP_168456186.1\|1158250_1159000_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.57466e-54
NZ_CP051157.1\|WP_168456191.1\|1163413_1164904_-\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP051157.1\|WP_168456196.1\|1169632_1170052_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	3.2577e-88
NZ_CP051157.1\|WP_168456193.1\|1165557_1166718_+\|glutamate--cysteine-ligase	gnl\|CDD\|273942	TIGR02049, putative_gamma-glutamylcysteine_synthetase, glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0

>NZ_CP051157.1|WP_168456189.1|1159514_1162049_-|DNA-polymerase-I
MKEKTFTIIDGYGFLFRAYYVLHHLTTTTGIPIGGVYGFLKMVLKYIVHSDYLTIAFDSGKKNFRHTLYSEYKANRVTPPEDLIPQFAILREAVEAFSLSYEEIEGYEADDIIATLAAKYANQQDFKVVIASSDKDLFQLLNYNVLIFDPIKDMYIDEKQVVEKFGVNSDKLLDLFSLTGDTSDNIPGVPGIGPKTAAKLLDEFGSLNNILENINNIEQTRVRNILTEHKEKALISRKLLSLCEKVDLQHDIEKYEVHPPNMEKLLGFLKKYEFNSLIGKVEQLFSYSKSSKKKKTEYNSEELEKFLEHCRYEGKIAIYCHFEDDVISKISLSYSKDSIFYISQDYLQNAVIAINSTLLSNGVLKVIHDVRKVREIFPAIEKVLGSVDDLMTMSYSLDTGKHDHSISNIIAHNLSGDVGTFSAKTLIAVHEKLTQRLFQEKLFTIYERFDKPLTEVILNMEKNGILLNIQKLQELSGKFQQLLAVLEDDIHNLAGERFNIASPKQLSDVLFNKMGLNKKKKLKSGSYSTNSEVLEELGMEGVEIASKILDWRHLSKLKGTYTDALVKRVDPIDGRVHTNFSTTATGRLSSSNPNLQNIPIRSEEGNFIRQAFIAPKGYKIISADYSQIELRLLAHIANVAAFKEAFANGQDVHNITARQVFGVQEGIEVDRQLRQKAKSINFGIIYGISPFGLARRFKITIEEAAEYINYYFSCYPEIKIYMEKAMSIARQHGYVETLFGRRCFVKDIHNTITYLRQFAERAAINAPVQGTAADIIKRAMIQLYDQLKGGKIILQVHDELLVEVEDDKVQETAKLVKDIMENAVKISIPFEVEVKISDNWGTTV
>NZ_CP051157.1|WP_168456188.1|1159334_1159490_-|hypothetical-protein
MYGKWCYPSSLYDVIKVAGTGIHSFFYWIPASRAGITPFDENKKPLIFDSV
>NZ_CP051157.1|WP_168456187.1|1159143_1159332_-|hypothetical-protein
MKIRLTLFAWMNIRDLLFSILRKNENKAYLNGDRLLALWSKLYECCNQQVVCVTDGVIPVFL
>NZ_CP051157.1|WP_168456186.1|1158250_1159000_+|SDR-family-oxidoreductase
MGKLEGKIALINGASGGIGSAVAKRFVREGAYVILISRSIDHLKPLYNEIEELEEFKEGSVKLIQLDLLDFENVQILANMIESLKLSESGALDILVACTGILGKLSPVHECELEELQNIMNTNFTANWYLLKNLDPVLKKSNSGRVVFMTSEVTLSPSSYPYWAPYAASKAALEIIVKIYASETKHTKLCVNAVYPEGPVDSEMYKQAFPGKDTPELVLPDKLTDKFVELTSEDCDISGQVLPLSKSLE
>NZ_CP051157.1|WP_168456185.1|1157415_1158240_+|YihY/virulence-factor-BrkB-family-protein
MNKLLQKFYSIIYCLYRALIDTIYNDGMEHAGYLSFLILLSIFPFLIVLMALASTFASFLDQYNIGWTSIIDNMPQDILASLMPRIKEIISGPPHSLLTLAILGAIWTASSTVEGLRTILNKAYKVPVSPPYVLRRILSILQFLVITFIITLTIIFSTLVPMLIGFSYHGLSYTKYLLVEFVLFLVVSWLYFMLPNIKQNLSDVFPGSCVAVMLWTLSASVFKQYLRASFGQLDLIYGSLGGIVVSLLFFYVVSLIFIYGAKFNFQLKYSNGFC
>NZ_CP051157.1|WP_168456312.1|1156818_1157208_+|hypothetical-protein
MPETRDQDTQAVDKSSNKIVSGLRQENKNLTRDKQTISEQLKQKVREIEELKERLKKSQEENKQLKQKVTKGTGVDASSSTDQEETKEMEVQTDVQVSNFHDLYDKEGRYVRTELSDPNLTPNDPEKSR
>NZ_CP051157.1|WP_168456184.1|1152972_1154316_-|phosphomannomutase/phosphoglucomutase
MDNTIIRKYDIRGVVGKDLQIDDGYEIGRKVGQTVSSVCIGYDSRIDSPSIEKELIRGLTLSGANVIRVGLCSSPMLYTATQITQADLGIMITASHNPSKYNGFKFFSSKKVYSDQEIKEVISNPIKSSMKIGSLININIYSEYILILKSALKNNTTQKLKIAWDLGNSPVSGIARYIEKILPGHTHIVTNNSIDGTFPLHDPDPIEEKNLAQLIDIVKKNECDLGIALDGDSDRVRLIDNQGNVVSNDHLFMIFAREVLEEYPQSKVIANIKMSMKAHDFVSKLGGQVITCATGHSLVKKKMLEEEAEFAGELSGHFFFSELGFDDGLYSAVKAIDILLKTNQSLYQIIEDLPKLYITHEVKIVVQDEKKFQIIESIKKTLEQQSIAFSELDGIKVTNNDNKGWWLLRVSNTQNCITARCEGNTLEDFELTKKVLFYYIDKARSLN
>NZ_CP051157.1|WP_168456183.1|1151749_1152970_+|heme-biosynthesis-protein-HemY
MIYLIIFILSFLFGIWIKVSGEVVRLELGSYTVNIDLYFIIFTCVFLLFLLIILTRFYSSISSTFTNIRNRRRDKKELLLFEAFFSMDLGNMENAHKLVKNLNEESDKLSLIKLFNAAKTGNYSFFSHGLINIANKNLNLALLLANKLIIDLKQEKAIFQKFIEYCSSSIDNKILSIPFQIEHCILQEDWACAILKLKEAVKFNIFLPFDCKKMLAVLYCALAKQYESKENYKEAIKSLFRAQSYCATFQPINYLKAELYIRLGKIRKASAVLETEYTVNPTSQLAKIYISLNSKGAERLCNLRPDYYFSYCLLASSSISLGRYDLASQHLDNAMKKANYVSIYLIMVQLKVVLQEYDQVIYWLNKMDSEALPEPCWKCTNCSQKLKQWDYKCSSCNSFNCVCYSQ
>NZ_CP051157.1|WP_168456182.1|1151021_1151753_+|hypothetical-protein
MNDIQRQCIGWFLIALLFASYIAINNIVFLKVNRQESGNNIKTLTENIDELRMLLEVNQSRIEKKIFDLKRSLHTQCEQSDGNLRQKNLAKLLLLVVKMKNSLLQEAKFDNHINAIKPLISELDDPEVENALNELENLKEIDTLPELKLSFEKTIDTINYNKSTLFQKVISNWVKIKDKNDPLRIKLAEIEESINDNDWQSIATIAGDLTHQEFKPWLNKLNCFTAASKNISTIYYYLLQYIS
>NZ_CP051157.1|WP_168456311.1|1149799_1151029_+|lipoprotein-releasing-ABC-transporter-permease-subunit
MSIAFEVTMAIRYLRAKNARFCSIMTLFSIIGIALGVATLIVVMSVMNGFRAKLLDSILGIDGHINVYFDKNVNSDYYAVSKSIEKIPGVLKATPMTNDQVIVTANGRIVGAVVRGMSAKDLLNNTTVTNNVIVGNVKKFDEGIIIGARLAEALNIDCGDKIVLISPEGFDALFDEMPKMKEYEVVAIFDMGMFEYDNTLMYMPIKSAQAFFNYKDSIRNIEVFVDDITKANELANAIEKETGMEAESWQSQQSHYFNALKTERNVMFLILTLIIIVAAFNIVSNLMMIVQEKKSAIAIMRTFGATTGSIMRIFCTCGLLIGFTGTCLGSIVGVIFSLNIENIRVFLENVANVKLFDPMVYFFSSLPVILVPQDVVNVSALALFLSFLATIAPALQAAAQDPAEILRYE
>NZ_CP051157.1|WP_168456191.1|1163413_1164904_-|ATP-dependent-protease-ATPase-subunit-HslU
MSSERKILFTNFSDQSMTLSEGQSCDSNTHNKKNDLCKDTKSSCDSNNKNARANNSTQVLLDDLPPQKIVKELDRFIIGQNDAKRAVAIALRNRWRRNKVPLPLRDEIIPKNILMIGHTGVGKTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSIIRDLVDAAMVLVKEKARKALAKKALDLAEKTIVDSMVGESASEESKKIFRERLRNKEFENGEVSINVRESKGVLPAFDIPGMPGGQVGIVNVTELMGKMFNGGKKTKTITVKVKEAREILINEESERLMDENKIIKKAIDLVTNEGIVFLDEIDKIAARTEVKGEVNREGVQRDLLPLLEGTTVSTKYGHVKTDHILFIASGAFHLSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVILEFTNDGIETIAEIAFTVNREVENIGARRLHTVMEKLLDEISFIASENSGEKFVIDGKYVKDKLQSISKQLDLSKFIL
>NZ_CP051157.1|WP_168456192.1|1164905_1165460_-|ATP-dependent-protease-subunit-HslV
MIRHDNDKIYGTTILSIRRGKNVVVVGDGQVSLGHTVIKSGAKKVRRLSGDSVIAGFAGATADAFTLFERLESKLDKHPGQLMRACVELAKDWRMDKYLRKLEAMMIVADKSISLVITGTGDVLEPEDGIAAIGSGGNFALSAARALIDVEGISIEEVARRAMKIAADICVYTNHNVVIEKIEG
>NZ_CP051157.1|WP_168456193.1|1165557_1166718_+|glutamate--cysteine-ligase
MQNIIHPNLEKNINDWFETKFNGFTLPFYSSVDLRNSGYKIAPIDANLFPAGFNNLSELSKTTAAKLVRSYFEKKRYKKILVIPENYTRNKIYIENVFAIEKILQLAGFETKTGLFHNEAYNSIEPYETVVKENSLLKTTSGFVPDVIVLNRDMTSHIPSVLENVKQEIVPSPLYGWHSRQKFKHFEIYQELASEFCSEFEIDPWLISVFTKSCNEVNFSDHSSRETVATKVNQVLSLIHKKYEEYEIKTQPYVFIKASNGTYGMGIITATSGDEILNLNKKKRHKMKKVKEGIKINSVIVQEGIPTIDVFERSPAEPLIYYIGNTPTCYLYRCNSRKTIYSSLNATDCEFHDISQVIENKTLSLWNVVSKLAVLALAVEMRSFHI
>NZ_CP051157.1|WP_168456194.1|1166728_1167595_-|hypothetical-protein
MLNELKKKPSTFAQKVHDAYNHDTRRIICITTGLTALLCKISLQFCCEFIDNNSSNIYLIREIARWVKFPTSILYITHSAFALHDLIKDYRNPNGKKELVKIVGKSASLASSSIEALMMLKVFHFLTGSNASAISHIHLTSTILFLFIAEPISYYYTYKKYQEAHKEYQDACRKGVKDAGELTKCEAELAKRKKSLVISTLTLSLGLLNFILRRIEIVTTPINLGNGIIYDFNLSVTVGIIYSAVFLAIQLDKLVNQPINDDPSTELDNANHAQHVDCGNNLYNGPAM
>NZ_CP051157.1|WP_168456195.1|1167672_1168695_-|ferrochelatase
MKKAIVLLNLGGPDSPNAVRPFLFNLFYDKRIINLPNPFRFLLAKFISAKREDTARKIYEQIGGKSPILENTKMQAEALEQELNKSVFCHPSSMELGSRKKNWIPASRAGMTQELARVFVCMRYWHPFANEVVESVKQFDPDEVILLPLYPQYSTTTTLSSIENWQKSAKKYGLKCNTKIINHYHNNQDFIEAHVNLTAQYYKLASRIGNPRILFSAHSLPLSVIEKGDPYALQIEETVKLIVERLNIKDLDWSICYQSKIGPVKWLEPSTEKELLRAKAEDIPVVLSPISFVSEHSETLVELDMEYKAIIKDGYYFRVPTLSTNSLFIKCLADLCRNCP
>NZ_CP051157.1|WP_168456313.1|1168691_1169399_-|hypothetical-protein
MFCGTKGFLTFSLAFLSYLEYSSRHNTKLKEGAAFAMKRNTIPFFEMAIITPFVCFALPAMIGIMSLMQCALVCAALMITTCFVVRTFHLREKLMEKTTDYSRETIDREFKKDTIKFPIFDKNREHIGYNSPNQEQSPNEASSFSFLRVLLFPLKVLLKVLQSCIMLALAAIELLEAVPSFCADLIFDRSFVSTQSSLQRSGHLLYASVRNLVPISVLDECVANFIGTPEATCCK
>NZ_CP051157.1|WP_168456196.1|1169632_1170052_+|nucleoside-diphosphate-kinase
MAIERTLSILKPDAVRNNITGNINSYIEKSGLKIIAQKMMLLTRRQAELFYEIHKDRPFFGELVEFMTSGSVIVQVLVGENAVSKYRQIMGATNPKQADKGTIRGDFADDISENRVHGSDSLENARREIAFFFAECELV
>NZ_CP051157.1|WP_168456197.1|1170351_1171386_-|hypothetical-protein
MVNLKSAIKENISYDLKGNELTAQDKARTLKLAKIIEEGESIAASFRPRIFSLNYDTNKILKTKITYEGEEFTLLHHAIYHKNNGAVKDLLKKAKDKGLLKAVLNEEVIIKCSDGKVEKHDPFSYAESCENGEAKDAILRAAQDGKILGDILKPNKEPILSNTTTATEEPKDTYTLEDIEEALGECKEVLDVENPSNNAVDQDADADAEIESCKNVSQDSESPQSEHKNSKDNQNTLKKQKSSIPKSLSSELYSESYTENSQGEKSPKNLPQSIAAGVVGAGLLASCITLYIMKMPVVAVALGIVGLTCAGFALYNLLKPKTKFEEMKDVKQHTAQPLRSFLCC
>NZ_CP051157.1|WP_168456198.1|1171719_1172265_-|hypothetical-protein
MFSNLFTRISQIWNEFLYGPFCTGLRDLFFTDDCYITIESKQAEQNQSTNVTTSSSEIITASEKQDLEWLAQIDYSLEKFNKSGICASAKERIIAACEKVSSKFNGAEVEKIKKFTNDYQDSEWEFIDKNDCRLSEQEDDTCISGWEIIEKAPSTEIRLLGITAKNKDGKTLFDLSGCFMS
>NZ_CP051157.1|WP_168456199.1|1172846_1173143_-|hypothetical-protein
MHRRGYRDDINNLVIPARDAGIQPYFHFYAKSKIRGLLCSSTQIDKPYFHFYTESKIRGFLFSSKGIILARDAGIQPYFHFYAKSKIRGLYMFIHANR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP051157_1	1.1\|71194\|45\|NZ_CP051157\|CRISPRCasFinder	71194-71238	45	NZ_CP051157.1	26954-26998	0	1.0
NZ_CP051157_3	3.1\|235067\|46\|NZ_CP051157\|CRISPRCasFinder	235067-235112	46	NZ_CP051157.1	954796-954841	0	1.0
NZ_CP051157_6	6.1\|521877\|60\|NZ_CP051157\|CRISPRCasFinder	521877-521936	60	NZ_CP051157.1	391338-391397	0	1.0
NZ_CP051157_7	7.1\|616807\|59\|NZ_CP051157\|CRISPRCasFinder	616807-616865	59	NZ_CP051157.1	238560-238618	0	1.0
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	399027-399072	0	1.0
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	617712-617757	0	1.0
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	274283-274328	0	1.0
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	1136734-1136779	0	1.0
NZ_CP051157_1	1.1\|71194\|45\|NZ_CP051157\|CRISPRCasFinder	71194-71238	45	NZ_CP051157.1	1090751-1090795	1	0.978
NZ_CP051157_1	1.1\|71194\|45\|NZ_CP051157\|CRISPRCasFinder	71194-71238	45	NZ_CP051157.1	1113782-1113826	1	0.978
NZ_CP051157_8	8.1\|748521\|45\|NZ_CP051157\|CRISPRCasFinder	748521-748565	45	NZ_CP051157.1	26954-26998	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	79402-79447	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	91454-91499	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	91773-91818	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	91933-91978	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	301950-301995	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	310359-310404	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	617136-617181	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	1173402-1173447	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	120745-120790	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	274086-274131	1	0.978
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	1114178-1114223	1	0.978
NZ_CP051157_1	1.1\|71194\|45\|NZ_CP051157\|CRISPRCasFinder	71194-71238	45	NZ_CP051157.1	1090592-1090636	2	0.956
NZ_CP051157_6	6.1\|521877\|60\|NZ_CP051157\|CRISPRCasFinder	521877-521936	60	NZ_CP051157.1	26976-27035	2	0.967
NZ_CP051157_6	6.1\|521877\|60\|NZ_CP051157\|CRISPRCasFinder	521877-521936	60	NZ_CP051157.1	79365-79424	2	0.967
NZ_CP051157_6	6.1\|521877\|60\|NZ_CP051157\|CRISPRCasFinder	521877-521936	60	NZ_CP051157.1	120768-120827	2	0.967
NZ_CP051157_6	6.1\|521877\|60\|NZ_CP051157\|CRISPRCasFinder	521877-521936	60	NZ_CP051157.1	310322-310381	2	0.967
NZ_CP051157_6	6.1\|521877\|60\|NZ_CP051157\|CRISPRCasFinder	521877-521936	60	NZ_CP051157.1	857317-857376	2	0.967
NZ_CP051157_8	8.1\|748521\|45\|NZ_CP051157\|CRISPRCasFinder	748521-748565	45	NZ_CP051157.1	1090751-1090795	2	0.956
NZ_CP051157_8	8.1\|748521\|45\|NZ_CP051157\|CRISPRCasFinder	748521-748565	45	NZ_CP051157.1	1113782-1113826	2	0.956
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	465652-465697	2	0.957
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	611345-611390	2	0.957
NZ_CP051157_10	10.1\|1159297\|46\|NZ_CP051157\|CRISPRCasFinder	1159297-1159342	46	NZ_CP051157.1	962583-962628	2	0.957

1. spacer 1.1|71194|45|NZ_CP051157|CRISPRCasFinder matches to position: 26954-26998, mismatch: 0, identity: 1.0

atttatccacgcaaatagataagccttattttcatttttatatag	CRISPR spacer
atttatccacgcaaatagataagccttattttcatttttatatag	Protospacer
*********************************************

2. spacer 3.1|235067|46|NZ_CP051157|CRISPRCasFinder matches to position: 954796-954841, mismatch: 0, identity: 1.0

attttcatctatgcaaataaggtaaaggcttattttcatttttata	CRISPR spacer
attttcatctatgcaaataaggtaaaggcttattttcatttttata	Protospacer
**********************************************

3. spacer 6.1|521877|60|NZ_CP051157|CRISPRCasFinder matches to position: 391338-391397, mismatch: 0, identity: 1.0

cccttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataaggc	CRISPR spacer
cccttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataaggc	Protospacer
************************************************************

4. spacer 7.1|616807|59|NZ_CP051157|CRISPRCasFinder matches to position: 238560-238618, mismatch: 0, identity: 1.0

ctcttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataagg	CRISPR spacer
ctcttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataagg	Protospacer
***********************************************************

5. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 399027-399072, mismatch: 0, identity: 1.0

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatacag	Protospacer
**********************************************

6. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 617712-617757, mismatch: 0, identity: 1.0

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatacag	Protospacer
**********************************************

7. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 274283-274328, mismatch: 0, identity: 1.0

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatacag	Protospacer
**********************************************

8. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 1136734-1136779, mismatch: 0, identity: 1.0

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatacag	Protospacer
**********************************************

9. spacer 1.1|71194|45|NZ_CP051157|CRISPRCasFinder matches to position: 1090751-1090795, mismatch: 1, identity: 0.978

atttatccacgcaaatagataagccttattttcatttttatatag	CRISPR spacer
atttatccacgcaaatagataagccttattttcatttttatacag	Protospacer
******************************************.**

10. spacer 1.1|71194|45|NZ_CP051157|CRISPRCasFinder matches to position: 1113782-1113826, mismatch: 1, identity: 0.978

atttatccacgcaaatagataagccttattttcatttttatatag	CRISPR spacer
atttatccacgcaaatagataagccttattttcatttttatacag	Protospacer
******************************************.**

11. spacer 8.1|748521|45|NZ_CP051157|CRISPRCasFinder matches to position: 26954-26998, mismatch: 1, identity: 0.978

attgatccacgcaaatagataagccttattttcatttttatatag	CRISPR spacer
atttatccacgcaaatagataagccttattttcatttttatatag	Protospacer
*** *****************************************

12. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 79402-79447, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatatag	Protospacer
*******************************************.**

13. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 91454-91499, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatatag	Protospacer
*******************************************.**

14. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 91773-91818, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatatag	Protospacer
*******************************************.**

15. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 91933-91978, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatatag	Protospacer
*******************************************.**

16. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 301950-301995, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagtcttattttcatttttatacag	Protospacer
************************.*********************

17. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 310359-310404, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatatag	Protospacer
*******************************************.**

18. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 617136-617181, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttatttgcatttttatacag	Protospacer
******************************** *************

19. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 1173402-1173447, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatatag	Protospacer
*******************************************.**

20. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 120745-120790, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatatag	Protospacer
*******************************************.**

21. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 274086-274131, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagccttattttcatttttatatag	Protospacer
*******************************************.**

22. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 1114178-1114223, mismatch: 1, identity: 0.978

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcaaataaggtaagtcttattttcatttttatacag	Protospacer
************************.*********************

23. spacer 1.1|71194|45|NZ_CP051157|CRISPRCasFinder matches to position: 1090592-1090636, mismatch: 2, identity: 0.956

atttatccacgcaaatagataagccttattttcatttttatatag	CRISPR spacer
atttatctacgcaaatagataagccttattttcatttttatacag	Protospacer
*******.**********************************.**

24. spacer 6.1|521877|60|NZ_CP051157|CRISPRCasFinder matches to position: 26976-27035, mismatch: 2, identity: 0.967

cccttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataaggc	CRISPR spacer
cccttcgatgaacataagaaatctcttattttcgattctatataaaaatgaaaataaggc	Protospacer
******.***********.*****************************************

25. spacer 6.1|521877|60|NZ_CP051157|CRISPRCasFinder matches to position: 79365-79424, mismatch: 2, identity: 0.967

cccttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataaggc	CRISPR spacer
cccttcgatgaacataagaaatctcttattttcgattctatataaaaatgaaaataaggc	Protospacer
******.***********.*****************************************

26. spacer 6.1|521877|60|NZ_CP051157|CRISPRCasFinder matches to position: 120768-120827, mismatch: 2, identity: 0.967

cccttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataaggc	CRISPR spacer
cccttcgatgaacataagaaatctcttattttcgattctatataaaaatgaaaataaggc	Protospacer
******.***********.*****************************************

27. spacer 6.1|521877|60|NZ_CP051157|CRISPRCasFinder matches to position: 310322-310381, mismatch: 2, identity: 0.967

cccttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataaggc	CRISPR spacer
cccttcgatgaacataagaaatctcttattttcgattctatataaaaatgaaaataaggc	Protospacer
******.***********.*****************************************

28. spacer 6.1|521877|60|NZ_CP051157|CRISPRCasFinder matches to position: 857317-857376, mismatch: 2, identity: 0.967

cccttcaatgaacataaggaatctcttattttcgattctatataaaaatgaaaataaggc	CRISPR spacer
cccttcgatgaacataagaaatctcttattttcgattctatataaaaatgaaaataaggc	Protospacer
******.***********.*****************************************

29. spacer 8.1|748521|45|NZ_CP051157|CRISPRCasFinder matches to position: 1090751-1090795, mismatch: 2, identity: 0.956

attgatccacgcaaatagataagccttattttcatttttatatag	CRISPR spacer
atttatccacgcaaatagataagccttattttcatttttatacag	Protospacer
*** **************************************.**

30. spacer 8.1|748521|45|NZ_CP051157|CRISPRCasFinder matches to position: 1113782-1113826, mismatch: 2, identity: 0.956

attgatccacgcaaatagataagccttattttcatttttatatag	CRISPR spacer
atttatccacgcaaatagataagccttattttcatttttatacag	Protospacer
*** **************************************.**

31. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 465652-465697, mismatch: 2, identity: 0.957

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgaaaataaggtaagccttattttcatttttatatag	Protospacer
*********** *******************************.**

32. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 611345-611390, mismatch: 2, identity: 0.957

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccatgcagataaggtaagccttattttcatttttatacag	Protospacer
*********.***.********************************

33. spacer 10.1|1159297|46|NZ_CP051157|CRISPRCasFinder matches to position: 962583-962628, mismatch: 2, identity: 0.957

gttcatccacgcaaataaggtaagccttattttcatttttatacag	CRISPR spacer
gttcatccacgcagataaggtaagccttattttcatttttgtacag	Protospacer
*************.**************************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

763863 : 801831

uncultured_virus(22.22%)

protease,integrase,terminase

attL 760925:760939|attR 777785:777799

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
760925:760939	attL	NA	NA	NA	NA
WP_168455868.1\|763863_764850_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	4.0e-28	27.4
WP_168455869.1\|765214_765850_-	chorismate synthase	NA	NA	NA	NA
WP_168455870.1\|765949_767023_-	AI-2E family transporter	NA	NA	NA	NA
WP_168455871.1\|767357_768773_+	MFS transporter	NA	NA	NA	NA
WP_168455872.1\|769351_770059_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_168455873.1\|770051_770363_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_168455874.1\|770509_770956_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_168456285.1\|770966_771425_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_168455875.1\|771555_772791_+	TolC family protein	NA	NA	NA	NA
WP_168455876.1\|772810_773392_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_168456286.1\|773410_774058_+	RlmE family RNA methyltransferase	A0A1D9CFF7	Lodeiro_virus	4.9e-06	27.7
WP_168455877.1\|774070_774718_-	transcriptional regulator	NA	NA	NA	NA
WP_168455878.1\|774817_775201_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_168455879.1\|775230_776076_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_168455880.1\|776238_777594_-	hypothetical protein	NA	NA	NA	NA
WP_168455881.1\|778262_779135_-	folate-binding protein YgfZ	NA	NA	NA	NA
777785:777799	attR	NA	NA	NA	NA
WP_168455882.1\|779280_779571_+	co-chaperone GroES	A0A221S331	uncultured_virus	8.0e-09	34.0
WP_168455883.1\|779671_781321_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.1e-126	47.9
WP_168455884.1\|781640_782144_+	hypothetical protein	NA	NA	NA	NA
WP_168455885.1\|782431_783013_-	hypothetical protein	NA	NA	NA	NA
WP_168455886.1\|783096_783432_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_168455887.1\|783635_784406_-	hypothetical protein	NA	NA	NA	NA
WP_168455888.1\|784459_784720_-	hypothetical protein	NA	NA	NA	NA
WP_168455889.1\|784729_784906_-	hypothetical protein	NA	NA	NA	NA
WP_168455890.1\|785070_785286_+	hypothetical protein	NA	NA	NA	NA
WP_168456287.1\|785360_786395_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_168455891.1\|786397_787270_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_168455892.1\|787273_788761_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	3.6e-20	34.2
WP_168455893.1\|788876_790409_+\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	1.6e-55	30.9
WP_168455894.1\|790764_792099_+	hypothetical protein	NA	NA	NA	NA
WP_168455895.1\|792293_792488_+	hypothetical protein	NA	NA	NA	NA
WP_168455896.1\|792524_793745_+	hypothetical protein	NA	NA	NA	NA
WP_168455897.1\|793641_794406_+	hypothetical protein	NA	NA	NA	NA
WP_168455898.1\|794823_796629_+	hypothetical protein	NA	NA	NA	NA
WP_168455899.1\|796677_798102_-	2-polyprenylphenol 6-hydroxylase	A0A0R6PKQ6	Moraxella_phage	3.4e-20	24.3
WP_168455900.1\|798098_798839_-	metal ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	2.1e-13	31.8
WP_168455901.1\|798830_799718_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_168455902.1\|799834_800095_-	hypothetical protein	NA	NA	NA	NA
WP_168455903.1\|800198_800348_+	hypothetical protein	NA	NA	NA	NA
WP_168455904.1\|800349_801831_-\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	5.8e-55	31.4

DBSCAN-SWA_2

871581 : 951486

Wolbachia_phage(43.48%)

protease,integrase,transposase

attL 880720:880760|attR 954752:954792

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168456293.1\|871581_873009_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_168456294.1\|873419_874934_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.5e-66	45.6
WP_168455960.1\|875459_876053_+	BON domain-containing protein	NA	NA	NA	NA
WP_168455961.1\|876102_877035_+	glutathione synthase	NA	NA	NA	NA
WP_168455962.1\|877010_878051_-	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	NA	NA	NA	NA
WP_168455963.1\|878140_878500_+	hypothetical protein	NA	NA	NA	NA
WP_168455964.1\|878501_879887_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-42	28.6
WP_168455965.1\|880415_880559_+	hypothetical protein	NA	NA	NA	NA
WP_168455966.1\|880637_880814_+	hypothetical protein	NA	NA	NA	NA
880720:880760	attL	NA	NA	NA	NA
WP_168455967.1\|880891_881449_+	hypothetical protein	NA	NA	NA	NA
WP_168455968.1\|881388_882333_+	hypothetical protein	NA	NA	NA	NA
WP_168455969.1\|882870_884214_+	trigger factor	NA	NA	NA	NA
WP_168455970.1\|884225_884825_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.2e-61	63.6
WP_168455971.1\|884836_886114_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.2e-110	52.2
WP_168455972.1\|886129_888589_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.7e-197	47.5
WP_168455973.1\|888597_889356_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_168455974.1\|889336_890353_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_168455975.1\|890582_890957_-	ferredoxin family protein	NA	NA	NA	NA
WP_168455976.1\|891086_892181_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.0e-28	35.4
WP_168455977.1\|892190_893624_-	sn-glycerol-1-phosphate dehydrogenase	NA	NA	NA	NA
WP_168455978.1\|893666_894872_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_168455979.1\|894991_895591_+	peroxiredoxin	NA	NA	NA	NA
WP_168455980.1\|895591_896557_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.2e-69	47.0
WP_168455981.1\|896659_898273_+	hypothetical protein	NA	NA	NA	NA
WP_168455982.1\|898217_899222_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	3.4e-14	33.6
WP_168455983.1\|899202_900591_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	6.7e-37	27.2
WP_168455984.1\|900583_901693_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_168455985.1\|901951_903871_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	8.7e-152	51.8
WP_168455986.1\|903958_905731_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_168455987.1\|905894_906095_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_168455988.1\|906119_906395_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_168455989.1\|906574_907867_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.9e-19	28.4
WP_168455990.1\|908107_908650_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_168455991.1\|908657_908933_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_168455992.1\|908932_909715_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_168455993.1\|909763_913210_-	DNA polymerase III subunit alpha	A0A291AVG1	Streptomyces_phage	2.2e-161	33.8
WP_168455994.1\|913347_915042_-	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	7.0e-105	44.7
WP_168455995.1\|915223_915901_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	5.7e-82	68.6
WP_168455996.1\|916063_916975_-	helix-turn-helix domain-containing protein	A0A1B2LRS2	Wolbachia_phage	3.0e-78	56.3
WP_168455997.1\|917052_918912_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.1e-263	77.5
WP_168455998.1\|919117_919717_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	3.4e-54	45.9
WP_168455999.1\|920057_923225_-	latrotoxin-related protein	NA	NA	NA	NA
WP_168456000.1\|925116_930555_-	ankyrin repeat domain-containing protein	Q9JMP0	Wolbachia_phage	1.6e-142	71.5
WP_168456001.1\|930515_932849_-	hypothetical protein	Q9JMP0	Wolbachia_phage	4.6e-46	34.1
WP_168456002.1\|932871_934167_-	hypothetical protein	NA	NA	NA	NA
WP_168456003.1\|935437_935974_+	hypothetical protein	NA	NA	NA	NA
WP_168456004.1\|937596_939639_+	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	7.9e-111	45.3
WP_168455263.1\|939740_940379_-	hypothetical protein	NA	NA	NA	NA
WP_168456005.1\|941054_942029_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	7.2e-78	67.4
WP_168456006.1\|942195_942360_+	hypothetical protein	NA	NA	NA	NA
WP_168456295.1\|943308_945081_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-79	37.6
WP_168456007.1\|949262_949469_+	hypothetical protein	NA	NA	NA	NA
WP_168456008.1\|950523_951486_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	5.6e-107	68.2
954752:954792	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP051157

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection