CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP041291	Acinetobacter indicus strain 94-2 chromosome, complete genome	4 crisprs	csx1,DEDDh,cas14j,c2c9_V-U4,csa3,cas3,WYL	8
NZ_CP041288	Acinetobacter indicus strain 94-2 plasmid p94-2-p2, complete sequence	0 crisprs	NA	0
NZ_CP041287	Acinetobacter indicus strain 94-2 plasmid p94-2-p4, complete sequence	0 crisprs	NA	0
NZ_CP041289	Acinetobacter indicus strain 94-2 plasmid p94-2-p5, complete sequence	0 crisprs	NA	0
NZ_CP041290	Acinetobacter indicus strain 94-2 plasmid p94-2-tetX3, complete sequence	0 crisprs	NA	0
NZ_CP041292	Acinetobacter indicus strain 94-2 plasmid p94-2-p3, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041291_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041291_1

213436-213699

Orphan

Consensus_repeat	Method
GAANTTTCTAAGCTGCCTANATGG	CRT
TAAGCTGCCTACATGGCAGTGAAC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP041291_1

>merge|NZ_CP041291|1|213436-213699|CRT,CRISPRCasFinder
GGTGTTTTTAAGCTGCCTACATGGCAGTGAACATGGTGATGACGGGGATTTGGCCGTACTCAAATTTCTAAGCTGCCTATATGGCAGTGAACCTGGTCCTGTCATACTGAAAATTCTGGTGAATTTTCTAAGCTGCCTACATGGCAGTGAACGTGGTGAAGAGGCGCTGATTGCTTTGGCGAATTTTCTAAGCTGCCTATATGGTAGTGAACTAGACAGGTATTTCCAGCCAGCAGAGCGGAATTTTCTAAGCTGCCTGTATGG

>NZ_CP041291|1|1|213436-213699|CRT
GGTGTTTTTAAGCTGCCTACATGG	CAGTGAACATGGTGATGACGGGGATTTGGCCGTACT
CAAATTTCTAAGCTGCCTATATGG	CAGTGAACCTGGTCCTGTCATACTGAAAATTCTGGT
GAATTTTCTAAGCTGCCTACATGG	CAGTGAACGTGGTGAAGAGGCGCTGATTGCTTTGGC
GAATTTTCTAAGCTGCCTATATGG	TAGTGAACTAGACAGGTATTTCCAGCCAGCAGAGCG
GAATTTTCTAAGCTGCCTGTATGG

>NZ_CP041291|1|1|213444-213647|CRISPRCasFinder
TAAGCTGCCTACATGGCAGTGAAC	ATGGTGATGACGGGGATTTGGCCGTACTCAAATTTC
TAAGCTGCCTATATGGCAGTGAAC	CTGGTCCTGTCATACTGAAAATTCTGGTGAATTTTC
TAAGCTGCCTACATGGCAGTGAAC	GTGGTGAAGAGGCGCTGATTGCTTTGGCGAATTTTC
TAAGCTGCCTATATGGTAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041291.1\|WP_104494800.1\|225880_226492_+\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|378467
NZ_CP041291.1\|WP_168369516.1\|215364_216288_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP041291.1\|WP_016658268.1\|206057_206558_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP041291.1\|WP_005177351.1\|207353_207644_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	unknown	unknown	gnl\|CDD\|237504
NZ_CP041291.1\|WP_005177343.1\|212896_213391_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP041291.1\|WP_075166742.1\|219123_221091_+\|phytase	unknown	unknown	gnl\|CDD\|226698
NZ_CP041291.1\|WP_168369520.1\|223662_225816_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
NZ_CP041291.1\|WP_168369517.1\|216605_219065_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP041291.1\|WP_168369512.1\|204959_206018_-\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	unknown	unknown	gnl\|CDD\|131215
NZ_CP041291.1\|WP_075166740.1\|221855_222302_+\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NZ_CP041291.1\|WP_104511156.1\|211204_212629_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340886
NZ_CP041291.1\|WP_168369514.1\|213818_214193_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP041291.1\|WP_168369518.1\|221162_221849_+\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP041291.1\|WP_075174492.1\|207680_208625_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	unknown	unknown	gnl\|CDD\|184320
NZ_CP041291.1\|WP_075174493.1\|206586_207342_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP041291.1\|WP_016658266.1\|204164_204935_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|182026
NZ_CP041291.1\|WP_016658265.1\|203373_204165_-\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	unknown	unknown	gnl\|CDD\|236163
NZ_CP041291.1\|WP_168369519.1\|222298_223093_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_CP041291.1\|WP_168369513.1\|208886_211004_+\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	unknown	unknown	gnl\|CDD\|236931
NZ_CP041291.1\|WP_168369515.1\|214378_215368_-\|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117

Protein	Function_ID	Function_description	E-value
NZ_CP041291.1\|WP_104494800.1\|225880_226492_+\|DUF4198-domain-containing-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	2.73801e-08
NZ_CP041291.1\|WP_168369516.1\|215364_216288_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.01988e-21
NZ_CP041291.1\|WP_016658268.1\|206057_206558_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	2.22331e-59
NZ_CP041291.1\|WP_005177351.1\|207353_207644_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	gnl\|CDD\|237504	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional.	5.76461e-63
NZ_CP041291.1\|WP_005177343.1\|212896_213391_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	4.20272e-64
NZ_CP041291.1\|WP_075166742.1\|219123_221091_+\|phytase	gnl\|CDD\|226698	COG4247, Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism].	3.96707e-79
NZ_CP041291.1\|WP_168369520.1\|223662_225816_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	1.31875e-173
NZ_CP041291.1\|WP_168369517.1\|216605_219065_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP041291.1\|WP_168369512.1\|204959_206018_-\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	4.78413e-135
NZ_CP041291.1\|WP_075166740.1\|221855_222302_+\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.68688e-46
NZ_CP041291.1\|WP_104511156.1\|211204_212629_+\|MFS-transporter	gnl\|CDD\|340886	cd17328, MFS_spinster_like, Protein spinster and spinster homologs of the Major Facilitator Superfamily of transporters. The protein spinster family includes Drosophila protein spinster, its vertebrate homologs, and similar proteins. Humans contain three homologs called protein spinster homologs 1 (SPNS1), 2 (SPNS2), and 3 (SPNS3). Protein spinster and its homologs may be sphingolipid transporters that play central roles in endosomes and/or lysosomes storage. SPNS2 is also called sphingosine 1-phosphate (S1P) transporter and is required for migration of myocardial precursors. S1P is a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. The spinster-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.3748e-67
NZ_CP041291.1\|WP_168369514.1\|213818_214193_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.22179e-09
NZ_CP041291.1\|WP_168369518.1\|221162_221849_+\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	2.35881e-76
NZ_CP041291.1\|WP_075174492.1\|207680_208625_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	gnl\|CDD\|184320	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional.	0
NZ_CP041291.1\|WP_075174493.1\|206586_207342_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	6.68003e-109
NZ_CP041291.1\|WP_016658266.1\|204164_204935_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|182026	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.	5.43773e-110
NZ_CP041291.1\|WP_016658265.1\|203373_204165_-\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	1.40255e-159
NZ_CP041291.1\|WP_168369519.1\|222298_223093_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.09991e-13
NZ_CP041291.1\|WP_168369513.1\|208886_211004_+\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	gnl\|CDD\|236931	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional.	0
NZ_CP041291.1\|WP_168369515.1\|214378_215368_-\|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	9.98947e-06

>NZ_CP041291.1|WP_005177343.1|212896_213391_+|DNA-starvation/stationary-phase-protection-protein
MAKMKKASMHIDIGISEDNRAKIVEGLSRLLADSYTLYLMTHNFHWNVTGPQFNSLHTMFMTQYTEQWNALDVIAERIRALGFPAPGTYKEFVKLASIEEVEGVPKANEMVELLVRAHETVARTARSIFDVVEEANDQPTADVLTQRLEVHEKTAWMLRSLLEE
>NZ_CP041291.1|WP_104511156.1|211204_212629_+|MFS-transporter
MNDKTLEIDAVERNIQPESKQFEAAHPIDLPATPSSQDSSSTYQWYVVIICMVAYILSFVDRQILSLMIEPIKADLMLSDTQFSLLQGLAFSLFYAFMGVPIAALADKKSRIKIISIGIAFWSLATAACGLSKNFIQMFLARLSVGAGEAALSPAFYSIVADLFPKEKLGRALGVYAIGAFIGSGLAFLIGGYVIGLLKEVDFVVLPIIGELKTWQLTFFIVGLPGVLLALVMILTVREPSRKGVKVGQDGEVVKASFKNSVAFIKLHKKTFFCHFIGFSFYTMMLYSLLGWAPAYYMRHFGLDASQTGYVLGCIILVANTAGALFCGWLIDFFSKRGYSDAAIRAGALGCAALIIPSVLFTQVDNLYLSFALIFVAMFFSTFPIPASAAATQMLTPNQLRAQVSAKFLLISNLIALGVGTTAVALITDNYFENTLMVGHSISIVNAVAGVIGVFLLYKGCRYYRDSIQHEKLN
>NZ_CP041291.1|WP_168369513.1|208886_211004_+|phenylacetic-acid-degradation-bifunctional-protein-PaaZ
MLELDTQTAQTESQATDYSSVRPALKTLSSLVCSQEFVASQDFRPVQHAITGETIYQVSSFGLDTRAVVDYAKQHGAAIASWTFHQRANALKQVAQYLLERKEDFYELAKATGCTRKDAWIDVEGGIGTLFAYSSLVRRELSDETAWVEDSWIPLSKHGAFGAKHVLSPKAGVAVHINAFNFPIWGMLEKIAPTLLAGVPCIVKPATEGAELTHAVVKAIHASGYLPEGALQLICGQTYDLFEQLNPQDTVTFTGSAATGQKLRAHPHLNQYSIPFSMEADSVNSAILTEQASDTAIDLFVREVFREMTSKAGQKCTAIRRAFVPRELLATVQERLIAKLQKVVVGNPELDQVTMGALASLKQKQDVAAKVEQLSQEAQIVFGSHLRQDFSIQADQPELGAFYPPTVLVCEQPEQASSLHQIEAFGPVVTLMAYDHLAQLAGLVARGEGSLVASVVRDCEQNIEQLIAKIAPWHGRVHVLDEESAKESTGHGSPLPHLVHGGPGRAGGGEELGGLRAVKHYMQRTAIQGSPNAMTQIGHSWTAGAQVFEDRVHPFKKSFDELRVGERLLTARRTVTEADLVNFACLSGDYFYAHMDKIAAAESLFEERVAHGYFVVSAAAGLFVDAAPGPVIANYGMDNLRFVEPVKIGDTIQVELTCKQKTPKQQRDPSQKPHGVVVWDIKVKNQRNELVATYDILTLVERGEA
>NZ_CP041291.1|WP_075174492.1|207680_208625_-|1,2-phenylacetyl-CoA-epoxidase-subunit-A
MTNQLHSFEQAIEKDISIEPKNWMPEAYRKTLIRQIGQHAHSEVVGMLPEGNWITRAPSLKRKAVLLAKVQDEAGHALYLYSAAETLGADRDDMMDKLIAGRMKYSSIFNYPTLSWADVAAIGWLVDGAAIVNQVALCRTSYGPYARAMVRICKEESFHQRQGFEAMMQLANGTPEQKQMAQDAVNRFWWPALMMFGPSDDNSPNSAQSMAWKIKRFSNDELRQKFVDNTVPQVLQLGLSVPDPDLRFNQDTGHYEFGEINWTEFFDVIAGKGPCNHERIEARRKAWEGGKWVRETAAVYAQKQQTQQQQQKVA
>NZ_CP041291.1|WP_005177351.1|207353_207644_-|1,2-phenylacetyl-CoA-epoxidase-subunit-B
MDNKNHWSLYEVFVRSKQGLSHRHVGSLRASDDEVALQNARDVYTRRNEGVSIWVVKSELITSSQPDEKPEFFDPSLDKVYRHPTFYNIPDGIEHM
>NZ_CP041291.1|WP_075174493.1|206586_207342_-|phenylacetate-CoA-oxygenase-subunit-PaaC
MNQTVLAQFLLHVGDSQLILSHRLAEWCGHAPELELDIALANIGLDLLGQARTALSLAGEIEGLGRDEDKLAYFRTEREYRNLLLCEQPNGDFAQTMVRQWLMDLYHLELFTALSQSQQADVVAFAVKSLKEVKYHLRFSTTWMERLSLGTAEAHEKTQQGLNQLWRFTAELFEQTADEQQLVAQGILPDFAPLKAAWTAQVQTELQRFGLSLPDTGAYRSGAKQGLHTEHLGFILAELQYMQRSYPNMAW
>NZ_CP041291.1|WP_016658268.1|206057_206558_-|phenylacetate-CoA-oxygenase-subunit-PaaJ
MNLIRHCLDECWDALAQVSDPEIPVLSVLDLGMIRGVELNAQDEIVVRLTPTYSGCPATDLLKDEITAAFQSKGLTPVQVVVDLSEAWTTDWMSESGKQKLQQYGIAPPQGQSHQCGTHVALSDGIRCPHCHSQQTKLLSEFSSTACKALYKCQDCLEPFDYFKCI
>NZ_CP041291.1|WP_168369512.1|204959_206018_-|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK
MSQFIPLTIKSIQPQTEQAICIAFDLAPEQADLFQYQPGQHLTIRHLTEQGEIRRCYSICSDRAEDMSIAIKKIDQGQFSTWANEHLKAGDVLEVMPPQGVFFQKAAKTGGQNYLGFSAGSGITPILSIVKSVLNHQPGAHFTLVYGNRSWKQTMFSEQIMDLKDRYKERLQLVNVFSRELNDSQLLNGRIDAEKLQQLFQAGLIHSQFDHCFACGPEEMMNAVETVLPELGIERSKIHTERFNTGTVPKASAAQIESRSEEKVNIILDGRELIVDVSKQDDSILDAALRAGADLPYACKGGVCATCKCKVLEGEVEMAINYSLEEDEVAKGYVLSCQARPTSANVRLSFDE
>NZ_CP041291.1|WP_016658266.1|204164_204935_-|enoyl-CoA-hydratase/isomerase-family-protein
MDYLKSSLAAPGVVLIELNRPEKRNALNNATLKELADHLQQLDADSSVKAVVITGNPQCFAAGADLNELAQLDVVSIQQDQRPLLWKGIDEFSKPLIMAVNGYALGAGFELALHGDMIITGENAQFALPEIGLGMLPGAGGTQRLARLVGQQLAMRWAMTGEMVSATTALQHGISSQVCPSGLTVQYALELATKIAAQAPLAIRAIKQSLKSIHEVTLSQGLKLERQHFVWLAATQDRQEGIQAFLEKRKPEFRGV
>NZ_CP041291.1|WP_016658265.1|203373_204165_-|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase
MDYQTIIVEEKNAVGYLTFNRPKQLNSFNETMHQEVSKVMKAWAKDSKIRAVVISAEGRGFCAGQDLNDRVVDPNADAPDLGLSIEKYYNPLIKLITDMPKPVLCAVNGVAAGAGANIALACDIVLAAKSASFIQAFCRLGLVPDSGGTWFLPRLVGRAQAMGLAMLGDKVSAEQALQLGMIWQVVEDDQLKAEAEKMAEHLAKQPTYGLSLIKKAIHAAADNNLDEQLILERDLQRLAGRSSDYKEGVQAFMQKRTPQYTGC
>NZ_CP041291.1|WP_168369514.1|213818_214193_-|transposase
MDLKIVIDSTPTLKKPRRTFTAEFKHQLIQQCQQPDTSVAKVAMQHQINANLLHKWIRQSRSMVPSLTTPSCPQTDFLPVILHPTPVKQEAPPPPVPERKATAHIRIPLHDEQCSVKDQMIEIE
>NZ_CP041291.1|WP_168369515.1|214378_215368_-|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein
MSYQNDQLILPTYLAPALLIDLAEMYGVNPNRILKGTPVFIEGLISVNQCVSVEQLIHMIRNLHESIVHPEVQFLFGQRYIETLTHPALNAIAYSQNIKEAIQRYVEFHIYLSPWLTPVAYYSDHKIILFWLNSQERHATSLVISAMTAVRTILLNTTQEELKMNYHFVGAEPEFIEQFWEHLGENIQFNSLVNAIQIDIQECTQKQNYQTSAMRQAYYHQAKVLQQQSGLEQSFLQEVHHFLIRNIHQAPNLEECAEYFQISIASFKRRLNKHNTSYQQMLDQARLFTSIQLKTLFAYNDELVADYLNINDIHNFRRAFKRWSNVVVS
>NZ_CP041291.1|WP_168369516.1|215364_216288_-|diguanylate-cyclase
MLKPFFYYPRHFLLVMIMAIACLAFFMLSGNFKAHSEIQVIDVIGEGLACLLTLLWIYLILKSRPRGYVTRYFYWGLTFVFLALWMDVLDEFIAIPKTLVWDDLLESFTTPIGFIVLTIAMVNWHKEQLVLSRKLQTKEHVFRDHRLFDAITPLADAQYFKQQLQHEINQRHHSAKNIHLMMINIKDLSAINREFGFDTGNQVLLVIAQTISLNIRPCDLVCRLAGDKFILMLLDLADAQVEIMARELQKCIQSQIFYTHQDFQKFNIDCRYTISEVQQDSPATEIQKLYKQMKHQQIIKLRTRMSV
>NZ_CP041291.1|WP_168369517.1|216605_219065_+|TonB-dependent-receptor
MSTHCSNKTAAFTFKVSTLVLCMLATGHSLAAETATEYVRVIGQAASINEALKEQRKSDSISSVVHADAIAKLPDDNAAEALQRIPGVSTERDQGEGRFVTVRGLGTDLNAVTINGTLVPAPEASRRGVALDVLPAELVQSLTVIKTLTPDMDANSLGGTIQVESLSAFDHDGLFYTAAVEGGYDEKREEYSPKVSGAVSQKFSLGSGTDNFGVAAALSWQERTFGSDNVETGGKWEDGLLEETEMRQYDIERERLGAGLNFDFRPNKNSEYYLRTLYSRFQDNETRQAAGVEFSDPLAINTPGSAEVVRELKEREETQEIKSFVLGGKNRFDQWTLEAQLGYSEASEKNPGGIAGAGFVGEFDDLQYSSTRIPVVKGGASFYDPSQYELDEVEWEKSTAKDKEKNAKFDLSRDYLLNDYASIFKFGAKVSQRTKTNDTEIWKVEDLDTSPAHFGSNGHYELAQFGPTLSSGPIHNQLAQLNLNDWRDAEESVINDYKTSEDIHAAYVMNTIDFDRLRVIAGLRYEDTDFETQGYRILDGESSSVSTQNDYDHWLPSLHLKYQLSSNAILRAAWTNTVVRPNFEQSRPGIYIDGDEAEFGNPNLKALEASNFDLGVEKYFGDASVISMNAFYKDIDHFIYNANVAGTGDWTDFDEAMTFKNGSSAKIYGVELGYSQKWHNFIFGLNSTFSRAKADIDGMVDGELMTRTINFPSQSKVVGNAMIGWENDRVGLRLTANYKSRYLNEISGIDEPEKDLYTDDQVFVDLSGHVNFNKNIQLFFNAQNLTDEVYYNYNGNRHYNAQYEEYGPSYKVGLKFTHF
>NZ_CP041291.1|WP_075166742.1|219123_221091_+|phytase
MTMLFKLSTFCAALVALSGCASSAHTQKNTISSPLHLEQTVSALDQPALPVEQIFKLPITVEDAHWIEIDGLNAQVLTSSKTQGLSLWNSNAQRVQHIPGSFSKIDYRSIGQQLIIQTTDLLQQRPVIFRFDLNTGTWAKPVYLAARSFKTEDNCLYLTPDQSLYSFLVGEEGIGEQWMIQSGGSNQISPRFIRNMSLPPNSGFCVVDDHHDKLYINEEDVGIWAYETDPEADLIRYPVDLNHPHGSILGNVSGLSLIDNALAAMDESKAVLYRYRIEGTSWHKLPPLSLQNVDEPERISLKGTQDQKQLLLVDDQIKLLNIDWTTQALPPKKAGLAIPADVETDLVPSRGDAADDPAIWVNQANPRLSRVLGTDKQGGLAVYDLNGKQLQYLKVGRLNNVDIRPNFKLGQQTVDLAIATNRDQNSLHLFSIHQKTGQVKDLGELPTDLNNIYGFCMYQNRQGETFAIPNDKNGTFVQYKIQSKASGLSAEEVLRFKVSSQPEGCVVDDEHDRIYVGEEAKAVWTTRLDDPKQIQLQSVITVGEQVKADIEGLAIYKGQVRDYLVISSQGDDSYLIVDAAAPYQLRGKFKISANLNHEIDAVSETDGLEVTSANLGGIWKKGMLVVQDGRKRMPEGNQNYKYVAWEKIAQALGLE
>NZ_CP041291.1|WP_168369518.1|221162_221849_+|protein-TolQ
MSNPSAAQLSVWELISHASLLVQAVMLILLLASIISWYVIIKQSIRLRQETAANKVFLSQFRQQPFPLATTEPSGPKSGGLAQIYQAGLDEFHALQHASARLSSTAVTDQVERRLLTSVSEQEEKLEKHLSFLATVGSVSPYIGLFGTVWGIMNSFIGLSQLEQATLSAVAPGIAEALIATAIGLFAAIPAVIAYNRLSARAEKISNSYYSFGNELQTRMLRFLQAGN
>NZ_CP041291.1|WP_075166740.1|221855_222302_+|protein-TolR
MQKRQKKHALNAEMNVVPYIDVMLVLLVIFMVTAPMLTQGIKVNLPNLEAETLVTPKEQKVITISIQEDGRYYWNVGESVDTAQVTDRATSLTEMKEKLSPLLQIHQDIQVFIRADRSANYELVAQTIGLLQQSGVEQLGLVTEEQDQ
>NZ_CP041291.1|WP_168369519.1|222298_223093_+|energy-transducer-TonB
MKSISRINPATAVAFSVTAFLHATLVYSVLNQNFDSPIQEVAPKSVQVKFVQLPKADISPQLQPEHAPTQEPAQSQVMPSAAAPVQSAPTQLAQSVKAKPASNQPAKARPEPSPQPKVASSPAVTDHTSTTMQTTAAVTHESPPAPAKPAATTQPAPFTSKPIVAENTQPPPVFDEKNYKPISKVKPDYPMRALENELEGNCTVEYSVNTQGQVVNPKALSDCDPIFVRPSLNAARQFKYQPRIVNGQAVEVAKIKNTFEYRIE
>NZ_CP041291.1|WP_168369520.1|223662_225816_+|TonB-dependent-siderophore-receptor
MSYIVHPSFKLSLLSLAILVSQQGFAEDTQQLATITMTAEPAKVNQSSEHTQRYIIQNSATASKLNIPLKETPQTVNVVTRQQLDDFSLNNTRDVLRNTPGIMVSNQETERSSYLSRGFEISNVLVDGVGLPLEGYNYNNDNPDSFLFDRIEVVKGANALNNGIGDPGATINLIRKRPTQDFQAALNASYGSWNTQRYEADVSSALTEDGRIRGRLFGYQQTGDSYLDRYSLEKNGVGAVLEADLTDTTLLTAGYSETQHQPNSVNWGSNPLINTEGEQLHYPQNYNYSPDWAYWDSNIKNYFAEIEQKLGGDWTAKLSYDKKRTKRDAKLLYLSGRPGADGTSGVFLYPGMYLDDNKQQQASLSFSGTYLLWGQRHEASVGYIWAENQLDELGYGGSFAQPLTTDLASFTPEEPSWDLSKTSGEMHIRQKNQSLYAATRLHLNEDLKVLLGANYVQAKSTGSSYGTDTIYDEDKVLPYAGLTYNFSPEYTGYLSYTSIFRPQTSKAADGNLNKPIEGESYEAGIKSSWLDDRLTATMAIFRTEQNNYPLRDSDGIPTLRKTQVSDLRSQGYEFSLAGQLSDHLNLSFGYTQFSLKDLINGGDARTFNPNQSFNLLTTYQVPQIPKLKLGLGLQWQDKTYLEVPESTTNGVTQQTGVIEQDAYALVNLMASYELNEHITLQANGNNLTNEKYLFNFPNQQGFYGAPANYSVAVKFKY
>NZ_CP041291.1|WP_104494800.1|225880_226492_+|DUF4198-domain-containing-protein
MKKMIALTMGLSMSLSAQAHMLWLERGPNAQTYAFFGEYSEQLKETQEGALKSFSQAKLVQAKKIYSPQRQQDHLIYATQDQADVKLSHELIYGESLLSYHAKAGRQHLKSESALDIIPAQRNSNTFTVLYQGKPAADLEVTVFSPQYWLKKYTTNSQGQITVATPWKGQYVLEVAKELDQAGTFNQQAYKKQYFVTTLSFVH

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Crispr_ID: NZ_CP041291_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041291_2

764906-764996

Orphan

Consensus_repeat	Method
CAGGCGCAGCCTTCGTCTTGCGCTCGGGCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041291_2

>merge|NZ_CP041291|2|764906-764996|CRISPRCasFinder
CAGGCGCAGCCTTCGTCTTGCGCTCGGGCAACACGTTGTGTTGCTTTATCCTCTTTACTCAGGCGCAGCCTTCGCCTTGCGCTCGGGCAAC

>NZ_CP041291|2|2|764906-764996|CRISPRCasFinder
CAGGCGCAGCCTTCGTCTTGCGCTCGGGCAAC	ACGTTGTGTTGCTTTATCCTCTTTACT
CAGGCGCAGCCTTCGCCTTGCGCTCGGGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041291.1\|WP_016659894.1\|769278_769971_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|178807
NZ_CP041291.1\|WP_016659896.1\|766473_767745_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP041291.1\|WP_127799636.1\|761282_762467_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341487
NZ_CP041291.1\|WP_075167548.1\|775059_776325_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|184990
NZ_CP041291.1\|WP_005176127.1\|760006_760666_+\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP041291.1\|WP_168369688.1\|757573_759460_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP041291.1\|WP_005176134.1\|756992_757199_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041291.1\|WP_168369690.1\|771215_772193_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|182813
NZ_CP041291.1\|WP_168369689.1\|765009_766392_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NZ_CP041291.1\|WP_005176089.1\|774415_775030_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP041291.1\|WP_075174415.1\|755778_756339_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379218
NZ_CP041291.1\|WP_005176117.1\|764290_764770_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
NZ_CP041291.1\|WP_005176106.1\|770189_770441_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP041291.1\|WP_004972250.1\|759573_759867_+\|DUF493-domain-containing-protein	unknown	unknown	gnl\|CDD\|377327
NZ_CP041291.1\|WP_104500587.1\|767863_768697_-\|DUF3298-domain-containing-protein	unknown	unknown	gnl\|CDD\|378702
NZ_CP041291.1\|WP_005176137.1\|756398_756923_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|377099
NZ_CP041291.1\|WP_005176119.1\|762737_764135_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP041291.1\|WP_005176105.1\|770460_770772_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP041291.1\|WP_160241544.1\|760747_761281_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041291.1\|WP_005176092.1\|772211_774263_+\|site-specific-recombinase	unknown	unknown	gnl\|CDD\|378408

Protein	Function_ID	Function_description	E-value
NZ_CP041291.1\|WP_016659894.1\|769278_769971_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|178807	PRK00031, lolA, outer membrane lipoprotein chaperone LolA.	4.4735e-55
NZ_CP041291.1\|WP_016659896.1\|766473_767745_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP041291.1\|WP_127799636.1\|761282_762467_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341487	cd14865, Fe-ADH-like, iron-containing alcohol dehydrogenases (Fe-ADH)-like. This family contains iron-containing alcohol dehydrogenase (Fe-ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. It is distinct from other alcohol dehydrogenases which contains different protein domains. Proteins of this family have not been characterized.	0
NZ_CP041291.1\|WP_075167548.1\|775059_776325_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	9.20619e-100
NZ_CP041291.1\|WP_005176127.1\|760006_760666_+\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	7.60806e-127
NZ_CP041291.1\|WP_168369688.1\|757573_759460_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP041291.1\|WP_168369690.1\|771215_772193_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|182813	PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.	1.17886e-102
NZ_CP041291.1\|WP_168369689.1\|765009_766392_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NZ_CP041291.1\|WP_005176089.1\|774415_775030_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	6.3794e-38
NZ_CP041291.1\|WP_075174415.1\|755778_756339_+\|hypothetical-protein	gnl\|CDD\|379218	pfam13488, Gly-zipper_Omp, Glycine zipper.	4.91271e-09
NZ_CP041291.1\|WP_005176117.1\|764290_764770_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.69841e-77
NZ_CP041291.1\|WP_004972250.1\|759573_759867_+\|DUF493-domain-containing-protein	gnl\|CDD\|377327	pfam04359, DUF493, Protein of unknown function (DUF493). This domain is likely to act in a regulatory capacity like pfam01842 domains. This domain has a remarkable property in that the C-terminal residue of every protein in the family lies up in the alignment. This suggests that the C-terminal residue plays some important functional role (Bateman A pers obs).	2.22787e-31
NZ_CP041291.1\|WP_104500587.1\|767863_768697_-\|DUF3298-domain-containing-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	2.76323e-10
NZ_CP041291.1\|WP_005176137.1\|756398_756923_-\|YecA-family-protein	gnl\|CDD\|377099	pfam03695, UPF0149, Uncharacterized protein family (UPF0149). The protein in this family are about 190 amino acids long. The function of these proteins is unknown.	2.7056e-20
NZ_CP041291.1\|WP_005176119.1\|762737_764135_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.01017e-45
NZ_CP041291.1\|WP_005176105.1\|770460_770772_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	5.44395e-56
NZ_CP041291.1\|WP_005176106.1\|770189_770441_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.59783e-51
NZ_CP041291.1\|WP_005176092.1\|772211_774263_+\|site-specific-recombinase	gnl\|CDD\|378408	pfam10136, SpecificRecomb, Site-specific recombinase. Members of this family of bacterial proteins are found in various putative site-specific recombinase transmembrane proteins.	0

>NZ_CP041291.1|WP_005176117.1|764290_764770_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQLWDSIEDCLANLASKGIGVDAVYPLTTKGTETPHTSDLNRPVALLMGPETRGLPEHVRLMFPQEHWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFQPLS
>NZ_CP041291.1|WP_005176119.1|762737_764135_+|APC-family-permease
MTNISGTQSAAKLQKTLGLWHIIIIGLAYIQPMTLFDTFGLVSEESHFHVPTSYIFALVAILLTSLSYGHMIRRYPSSGSAYTYAQKSIHPNVGFMVGWSSWLDYLLSPMVNIILAVIYLEALFPDVNHWVWVIVLTAFMTGINLRGARFVANFNSLIVFIQLLVIAIFTWMVFTKLQAGFNADGPISAEQRYQLWSLEPFWNELTSVGALITGATLLCFSFTGFDSLSSLAEETKDTEKTLPKAIFLTALIAGIIFIVSTYFMQIYFPNEPGSYFKNIAETQPEILMLVGGSLFQSYVLTFAIVTVMASGISAHAGVSRLMYVMGRDGVINKKIFGHISPRNFTPSYNILIVGAVALTAGFMDLDFVISLISFGALTAFSFVNLSVISRYALRDGRTRNVKDILNFVVVPLCGFIAVFALWLEVDETSLKYGLWWAMAGILYLGYKTKGFKHPAPQHNEFDDKL
>NZ_CP041291.1|WP_127799636.1|761282_762467_+|iron-containing-alcohol-dehydrogenase
MAKPYYEFFCPVKVIAGNAALEHIPFELVTLGAKRPLIITDKGVRGNNLLAPVEAAFESTDAEIGYIFDDVPQDSSLDTVRKAAQLYRDHNCDAIIAVGGGSVIDTSKATNILVTEGGDDLLKYSGAHNLPKPLKPFFVIPTTSGTGSEVTMVAVVSDTEKNVKMPFASYYLMPHAAILDPRMTQTLPPHLTAMTAMDAMTHAVEAYSCMASNPISDAYATAAIKKISNNLFKVLDNPSDAYGRLELAQASTMAGIAFSNSMVGLVHSLGHALGAVAHLPHGLCMNLFLPYVLEYNKDVNGDKIAELLLPLAGPDIYAQTPAHLRADKAIATLLTMRDRLYTMTKLPRTLSETGKVTEAQLDEVAEKALNDGSIIYNPKEASLEDLKSILKKAW
>NZ_CP041291.1|WP_160241544.1|760747_761281_+|hypothetical-protein
MISSKTVKPALQQAYVKLMMDVIGRGLVMASQVDQEIKQEVAKFPANFILSMKVFPNGPAFIARVTEDHQLELLPELDGKPDLVITFKHLTHAFLVFSFQESTAQAFAHDRMIADGDLSYAIRLVRCLNKMEALILPKLLAELAVKQYPSELNLKEKLSGAAHIYLKVAQSYFQRSA
>NZ_CP041291.1|WP_005176127.1|760006_760666_+|lipoyl(octanoyl)-transferase-LipB
MTDALQKPTLIIRQYSQLTPYQDRFLEMKQLTEQRDANTPDELWILQHHEVLTQGQAGKAEHILIPSHIPVVQTDRGGQVTWHGPGQLVAYFLFDLNRLGWNVRTLVSYAENLMIALLKKYGIEAYAKADAPGVYVAERKIGSLGFKIRKGRSYHGLALNIDCDLSGFQTINPCGYAGLEMVRIQDLVPDYPSFETLCRDIIETLEHSGYFSEVQTIQA
>NZ_CP041291.1|WP_004972250.1|759573_759867_+|DUF493-domain-containing-protein
MTLFNRTPSRELQEHLWVFPMDYPIKLIGDAGDELRIAVLEILVKHFPEFDAQSISITPSRTGKYHSITAQLRFEELEQVHAIYADLAACPLIKTAL
>NZ_CP041291.1|WP_168369688.1|757573_759460_+|RNA-polymerase-sigma-factor-RpoD
MSDMTSPTSQVAALISRGKEQGYLTYAEVNDHLPDSITESEQIEDIIQMLQDVGIPVHERAPESDDAMFEDTTEAADEVAEEEAAAVLASVENEPGRTTDPVRMYMREMGTVELLTREGEISIAKRIEEGIRDVLHSIAYWPNAVEVVLQEYKDYENGERRLADLLSGYLDPETDEEIPEVLEDEAVLDDEEESSSKSTKDVKLDDDDDEEESESDDDSEADSGPDPEIAKVRFAELTEAWKNAKDVIAKHGRNSKEAEAALQALASVFMMFKFAPRLFDIISEMIRGTHDQIRAAEREVMRYAVRRGRMDRTQFRTTFPGQESNPAWLDEQIAKAPAEMKGYLEKVRPDVLAFQQKIADIEKELGLNVKDIKDIAKRMAVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNITSPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEND
>NZ_CP041291.1|WP_005176134.1|756992_757199_-|hypothetical-protein
MSSTDFELDDNYGDDDVSFDEAAGKISAKESLEKRRLIDDLLAQRRLERDLKDFDYDFDEDDFDDEDD
>NZ_CP041291.1|WP_005176137.1|756398_756923_-|YecA-family-protein
MSALDLDLLSEYLDGDQNEYGLDFAATHGFLCAIAVGPQFDQWLDELFEGNQKKVPAEIVAQVKTWLESIRQNLANEEGIEFPFEIEEADVESSLGDWSVGFVDAMFLNEEAWFTPEFEEQLVDLTLPIMVFSGIDEEDPQMESFRRNGQLMDELAEEIPDNLNELYLMYHTPN
>NZ_CP041291.1|WP_075174415.1|755778_756339_+|hypothetical-protein
MTNPEIETQRQQEQKREQVKQLPKQQQQQLNANPKTGETGTHPVGTSVGAVGGAATGAAVGATTGPIGAVVGGTIGAVVGGLVGKTAAEAENPTEGDEDIYWREHSQSQPYYTSLQHTHPDLSYERDYQAAYRVGYAQRSRYEPGTRFEDVEPDLRSEWESTKGDTRLAWEDAKHAVRDAWNRMTR
>NZ_CP041291.1|WP_168369689.1|765009_766392_-|uroporphyrinogen-III-C-methyltransferase
MDIFPISLKLQQQRCLIVGGGHIAYRKAGLLQKAGAIIDVVAPDIDAALLELVQQSQGHYEAAAFNTEIPLRQYRLVIAATDDAAINRQVFEACEAENVLVNSVDDPPHCRFMVPAIVDRSPLLISVATNGASPVLSRQIRTQLETSIPHGMGKLASFSGQWRAAVKAKIQNPDERRIFWENLYASPLKEQVFNDNLQEANRLIEQALQEWTMPKGEVYLVGAGPGDPELLTLKALRLMQQADVVIYDRLVSDPIMELCRRDAEKIYVGKARSNHAVPQEGINALLVKYAQEGKRVCRLKGGDPFIFGRGGEEIEELFAAGVAFQVVPGITAASGCSAYAGIPLTHRNYAQSVRFLTGHLKEGSPELPWSELVYENQTLVLYMGLVGLEKICQKLIAHGQRPDMPVALVSKGTTPEQKVVVGTLADIASKVTEHQIQAPTLTIIGEVVKLREQLQWHERG
>NZ_CP041291.1|WP_016659896.1|766473_767745_-|serine--tRNA-ligase
MIDPKLLRNNIEAVNLALAKRGVQLNVEEWASLEARRKEIQSKTEALQAERNAGAKQVGQIKKAGGDASEIMARMSAIGDEIKAAEVALNELQAEIETKSLTIPNLPHESVPEGKDEADNVEILTWGTPREFDFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTEAYVPYLVNADSLRGTGQLPKFEEDLFKLQGEKEFYLIPTAEVPVTNFVRDEIIDADRLPLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQIVKPEDSMQALEELTGHAEGILQALGLPYRKIILCGGDMGFGATKTYDLEVWVPSQNTYREISSCSNMGDFQARRMKARYRADQKKTEFVHTLNGSGLAVGRTLLAVMENYQRADGSIEVPEVLRPYMGGAEYID
>NZ_CP041291.1|WP_104500587.1|767863_768697_-|DUF3298-domain-containing-protein
MQHLKSNLLTTTIALTTVLMLSACQPKQDAAPQVEAEQSQTQAAAIPVIQAKVVPVELKQQQRCDEEGCTEYDIQTVNTNVPWINAYFMQRIKKADPIAFSEDAASTASASSASSASSASSASEANSTEEPNRLSLSSTYVRYIGQHGRLATFSMQSYSYPAGAAHGMHHQEFVTFDLNSKKRLALQDILLPNSEAKLVQELFNHNYNWLNEHDIQRDKLRLSDNFYYGANGLVFVYPLYELASYAEGMPELELPYYAVDKLIKAEYLPSLPKYPAQ
>NZ_CP041291.1|WP_016659894.1|769278_769971_-|outer-membrane-lipoprotein-chaperone-LolA
MKMLRQTMCAMALGAATLAPVMSTTVYAAPVAASEQQATANLVKQLSHIKSMTANFEQTTKTSGKAPKNKGLTAQHMNQEFKGVMKVARPGKFYWETTSPAKQTIVTSGKTVWIYDPDLQQAVRQNLDEQVANTPALLLSGNTNQIMQSYRVTQPNKGKTYYTLYPKSDDGAFQSLTISFGANKAPSLMILEDSLGQTTYVRFNNVKVNPNIANSTFNFTPPKGTDIIDQ
>NZ_CP041291.1|WP_005176106.1|770189_770441_-|50S-ribosomal-protein-L27
MASKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVSVE
>NZ_CP041291.1|WP_005176105.1|770460_770772_-|50S-ribosomal-protein-L21
MYAVIQSGGKQHRVVEGETLKVELLKAETGATITFDDVLMLVNGDSIQIGAPVVAGAKVTAEVVGHGRHDKIRIIKMRRRKHYRKQQGHRQWFTELKITGISG
>NZ_CP041291.1|WP_168369690.1|771215_772193_+|polyprenyl-synthetase-family-protein
MTIDFKQDILAPVASDFAAMDQFINEGITSKVALVMAVSKHVVEAGGKRMRPIMCLLAAKACGAEDLEQARRLAAIIEMLHTATLVHDDVVDESGLRRGRPTANATWNNQTAVLVGDFLISRAFDLLVDLDNMTLLKDFSTGTCEIAEGEVLQLQSQHQPDTTEQTYLDIIHGKTSRLFELATEGAAILTGKPEYREPLRVFAGHFGNAFQIIDDILDYTSDAETLGKNIGDDLMEGKPTLPLIAALKNTSGAQHEIIRRSIATGGTSDLAQVIEIVQTSGALDYCQQRATEETEAAIAALNALPDTIYRQALVNLAKLALHRIQ
>NZ_CP041291.1|WP_005176092.1|772211_774263_+|site-specific-recombinase
MHIKFYDLFLNMQDQLETTPADLDEQLLIELVNRIRPANTENSEEIQEKFQAFLHALLITPNAANTLQSFVLCLISQYKQTSLYADTGILSLDGFWSQLFQRLGAHFLPLINDQSQLQDLLRRIFHQRSDKYWLDDIEDQQWQQLFRLLNQGHRNQDDKKLIRQEIIKAITVLSYRVSGIGLYPEFINAHPELTEYESPFLVQNREINDFIVQYKNLHQSADKFEAVIPPDASQALVMIDQCRNVSHKIRRATKRIGVSVSLTYLLSLLEQCLDRIELLLNLIVEEDDVRYSAMGELLVDITTALYSERSVRSLLATNSELMALQVTENASKTGEHYVSTDKAGFLEMYKSAAGAGVIIATMATLKVLAARLTLAPLMQAFINSMNYSLGFMLIHVLHFTVATKQPAMTAAALASTVQHRKGSKMAQIAELAALIINIIRTQFIAILGNISIAIPVAALIAFMWDAALHEPLMNHAKASKMLHDLNPFTSLAIPHAAIAGVCLFLSGLIAGYFDNMAVYRKVGPRLQAHAKLKKWMSQERLDRFAAYIERNLGALAGNFLFGIMLGSMGTIGYILGLPLDIRHIAFASANFIQGLMNVNGSPEIGLIIVSFLGVLLIGLTNLFVSFTLTIIVALRARRVRFEQWKPLAKLVMTHFLTRPSDFFWPPKQPVEVEEQSGPAKGHH
>NZ_CP041291.1|WP_005176089.1|774415_775030_+|phosphatase-PAP2-family-protein
MPNFLLYLGGLLCFFSVLMLYVPALTALDSAIVDWFSQHRNEMLNSLMTGLSVVGGMPFVLFLSSLWCLYLARQKEYANIVLVSIGLMGSFATAWILKYLIARERPPEMYHLVNSYGASFPSAHSFYAATLGCLAIYVSMQHPAHKAIVICAVMWMLLMGISRVYLGVHFPSDVLSGWSISFIWITLLYLILIKYSQRKPMNNF
>NZ_CP041291.1|WP_075167548.1|775059_776325_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MMSAKLWAPALTACALATSIALVGCSKDPNDAQQAAAQQQMPPTEVGVIVVQSQSVEQSVELSGRTTAFEISEVRPQTSGVVQKRLFTEGSYVREGQALYEIDSRTNRASVDSARAALARQQANLNVLRVKEGRYRQLVGSNAISKQEYDDIVAQVKLAEADVAATRAELRNAEINLGYSTVRAPISGQTNRSTVTAGALVTASQQEPLVTIQRLDPIYVDINQSSAELLRLRQQLSKGDLNSSNNTTVKLKLEDGSYYPVEGRLAFSDASVNPDTGTVTLRAVFPNPNHLLLPGMFATAQIVQGVIPNAVLIPQAAITRTPTGQAMAMLVNAKGVVEPRPVTTAGIQGKDWIVTEGLQTGDKVIVEGIAKVKPEQKVVAKPYQPQAAAPQGAQQPAASDKAKQPADQADAQAEQKATSNT

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Crispr_ID: NZ_CP041291_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041291_3

1931526-1931800

Unclear

Consensus_repeat	Method
CGTCGTGAAGGTGGCTTTGGCGACCGTCCACA	CRISPRCasFinder

3 spacers

cas3

The CRISPR arrays of NZ_CP041291_3

>merge|NZ_CP041291|3|1931526-1931800|CRISPRCasFinder
CGTCGTGAAGGTGGCTTTGGCGACCGTCCACAGCGTTCTTTCGATGACCGTCCACGTCGCGAATTCAACAGCGACCGTCCACGTCGTGAAGGTGGCTTTGGTGACCGTCCACAACGTTCTTTCGATGATCGTCCACGCCGTGAATTCAACAGTGACCGTCCGCGTCGCGAAGGTGGTTTCAATGAGCGTCCACGTTTTGACAGCAATGATGACAACCGTGGCAACCGCGTAGACTACAAACCACGTCGTGAAGGTGCTTTCGGTGACCGTCCTAA

>NZ_CP041291|3|3|1931526-1931800|CRISPRCasFinder
CGTCGTGAAGGTGGCTTTGGCGACCGTCCACA	GCGTTCTTTCGATGACCGTCCACGTCGCGAATTCAACAGCGACCGTCCA
CGTCGTGAAGGTGGCTTTGGTGACCGTCCACA	ACGTTCTTTCGATGATCGTCCACGCCGTGAATTCAACAGTGACCGTCCG
CGTCGCGAAGGTGGTTTCAATGAGCGTCCACG	TTTTGACAGCAATGATGACAACCGTGGCAACCGCGTAGACTACAAACCA
CGTCGTGAAGGTGCTTTCGGTGACCGTCCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041291.1\|WP_171065120.1\|1934642_1935227_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377516
NZ_CP041291.1\|WP_168369972.1\|1926823_1928734_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP041291.1\|WP_168369970.1\|1919393_1921217_-\|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|185635
NZ_CP041291.1\|WP_075168246.1\|1921625_1922414_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP041291.1\|WP_005180328.1\|1933125_1933905_+\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	unknown	unknown	gnl\|CDD\|223838
NZ_CP041291.1\|WP_005180318.1\|1936829_1937423_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813
NZ_CP041291.1\|WP_160232297.1\|1918147_1919302_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP041291.1\|WP_034598236.1\|1925910_1926513_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NZ_CP041291.1\|WP_005180340.1\|1923044_1923986_-\|oxygen-dependent-coproporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|235413
NZ_CP041291.1\|WP_045795311.1\|1935238_1935526_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP041291.1\|WP_005180325.1\|1933904_1934576_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl\|CDD\|275223
NZ_CP041291.1\|WP_005180320.1\|1935663_1936677_-\|magnesium-and-cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213369
NZ_CP041291.1\|WP_034597976.1\|1928846_1929677_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP041291.1\|WP_104489521.1\|1937425_1937827_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240046
NZ_CP041291.1\|WP_168369973.1\|1938471_1940517_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP041291.1\|WP_168369971.1\|1924221_1925595_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP041291.1\|WP_104489522.1\|1937849_1938485_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP041291.1\|WP_168370227.1\|1917561_1918020_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP041291.1\|WP_016658513.1\|1922630_1922840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041291.1\|WP_005180329.1\|1932307_1933129_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213228

Protein	Function_ID	Function_description	E-value
NZ_CP041291.1\|WP_171065120.1\|1934642_1935227_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	1.28169e-40
NZ_CP041291.1\|WP_168369972.1\|1926823_1928734_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP041291.1\|WP_168369970.1\|1919393_1921217_-\|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein	gnl\|CDD\|185635	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.	0
NZ_CP041291.1\|WP_075168246.1\|1921625_1922414_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	1.24994e-109
NZ_CP041291.1\|WP_005180328.1\|1933125_1933905_+\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	2.70936e-82
NZ_CP041291.1\|WP_005180318.1\|1936829_1937423_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	3.79905e-61
NZ_CP041291.1\|WP_160232297.1\|1918147_1919302_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP041291.1\|WP_034598236.1\|1925910_1926513_-\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	2.65905e-124
NZ_CP041291.1\|WP_005180340.1\|1923044_1923986_-\|oxygen-dependent-coproporphyrinogen-oxidase	gnl\|CDD\|235413	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase.	0
NZ_CP041291.1\|WP_045795311.1\|1935238_1935526_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.20836e-09
NZ_CP041291.1\|WP_005180325.1\|1933904_1934576_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	1.80585e-46
NZ_CP041291.1\|WP_005180320.1\|1935663_1936677_-\|magnesium-and-cobalt-transporter-CorA	gnl\|CDD\|213369	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup. A bacterial subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Mg2+ transporters Escherichia coli CorA and Salmonella typhimurium CorA (which can also transport Co2+, and Ni2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	4.76729e-128
NZ_CP041291.1\|WP_034597976.1\|1928846_1929677_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	7.94629e-111
NZ_CP041291.1\|WP_104489521.1\|1937425_1937827_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.24171e-36
NZ_CP041291.1\|WP_168369973.1\|1938471_1940517_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP041291.1\|WP_168369971.1\|1924221_1925595_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP041291.1\|WP_104489522.1\|1937849_1938485_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	5.70935e-30
NZ_CP041291.1\|WP_168370227.1\|1917561_1918020_-\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	4.43729e-35
NZ_CP041291.1\|WP_005180329.1\|1932307_1933129_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	5.52648e-142

>NZ_CP041291.1|WP_034597976.1|1928846_1929677_+|inositol-monophosphatase
MEPMVVMAARAAQTVGQELLKAHQNRHKLDLQVEEKGIDGPVTRVDRYLEQLTIDTLRKSYKNHSFLGEEFGLQEGKGHDADWCWVIDPLDGTLNFINGFPHFCISIAVQHKGVTQHGVIYDPVKDELFSASRGRGAMLNQRRIRVNVKDSLENTFLAVGHAYRAKRNGEVVSYAKNHFESLLNVTEAGAQYRRAGSAALDLAYVAAGRLDGYFELGLKPWDIAAGELIVKEAGGTVVDARGGSDSMDNGQVLACSMKMLKPLMKAVVPAWGDAAK
>NZ_CP041291.1|WP_168369972.1|1926823_1928734_+|1-deoxy-D-xylulose-5-phosphate-synthase
MLYTEIPTQRPVTPLLDSIDYPQQLRLLAQSQLAQVADELRQFILYAAGQSGGHFGANLGVIELTVALHYAFNTPHDRLIWDVGHQAYPHKALTGRREQLTTIRAKDGLAAFPAREESEFDTFGVGHSSTAISAGLGMALASRYQQQQREVVAIIGDGAMTAGMAFEAMNDAVAHQADLMVILNDNDMSISCSTGGFAKHLAALWQRGESVHIDAAGEAYIQPHPEWNYTSRLHCAATDAADNLFKAIGFDYFGPFDGHDVDQLVNVFQALKKRKGPRLIHVYTKKGKGFAPAEADQIKYHAISKINSSASAAAAPKYSDVFGQWLSDEAAQDSRLLAITPAMCEGSGMVQFAKQYPERFFDVAIAEQHAVTLAAGMACEGLKPVVAIYSTFLQRGYDQLIHDVALQNLDVTFGIDRAGLVGEDGPTHAGAYDYAYMRTVPNMVIMAPKDENECRQMLHTAYHYPGPAAVRYPRGNGVGVEIQQQLNLMEIGQAEIVARFNEQSDEQIAILAFGSRVYPAIEAAQAFAARHDIAVQVVNMRFVKPLDEAMIERLAENTQLFVTVEEHAVMGGAGSAVSEYLAKAQLVKPIIHLGLDDSFMQQATHSQMLQQAGLDAAGIEQAMTQAWNKLTESISS
>NZ_CP041291.1|WP_034598236.1|1925910_1926513_-|GTP-cyclohydrolase-II
MPIEFVATSRLPTAFGEFKITVFQDPKTGEEHVALSKGLEQAPTEPVLVRVHSECLTGDAFASLKCDCGPQLQATQRLINEAGQGVILYLRQEGRGIGLTNKIRAYALQDQGHDTVDANLMLNLPADARQYDMCSIMLDHLQVKAVRLITNNPLKIEALREQGINVVDRVPLTVGLNPFNEQYLKTKHERMAHMYQKDDF
>NZ_CP041291.1|WP_168369971.1|1924221_1925595_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKPASSLVQKYNVPGPRYTSYPTVPYWEEASFSREAWQQSLQRAFAESNASEGISLYIHLPFCESLCTFCGCHKRVTKRHEVEQPYIQAVLKEWDLYCQLLPDRPMIKEIHLGGGTPTFFSVAHLQQLIQGILGKATVAPEHEFSFEGHPNNTTREHLQALYDLGFRRVSYGVQDYNEKVQKAIHRIQPYEHVQRVTEWARDIGYTSISHDLVFGLPFQNLDDVLHTIQQTTQLNPDRLAFYSYAHVPWIKGNGQRGFKDDDVPKDELKRTLYEEGKKKLLAHGYHEIGMDHFALKSDAMYQAFQQGSLHRNFMGYTASKTQLMIGLGLSSISDSWYSFAQNEKTLEDYYARLEQNEIPVFRGHVLTAEDLMIRRHILNLMCSFQTSWAEPEMQFPELPEVLKQLEEMQEDGLLTLFEDHLQVTEQGKPFVRNICMAFDLRLKRKVPSTRIFSMTI
>NZ_CP041291.1|WP_005180340.1|1923044_1923986_-|oxygen-dependent-coproporphyrinogen-oxidase
MQHPTSADIQRVREFLLDLQARICAALEQQERAGGGTAEFVIDDWQRPEGGGGRSRVLQNGSVIEKGGVMFSHINISKLPASATERHPGIAGAKAQAMGVSLVIHPKNPNVPTSHANVRLFVAEPEGQDPIWWFGGGFDLTPFYPNDEDVLSWHQIAHDLCAPFGEQVYAEHKQWCDDYFYLKHRDEQRGVGGLFFDDLNQWDFDTCFEYIQAVGNGYLEAILPIFKRNQDKPYTEAQREFQLYRRGRYVEYNLVYDRGTLFGLQTGGRIESILVSLPNLAGWSYRPEWDADSAEKKLTDYYLKPHDWLRELQ
>NZ_CP041291.1|WP_016658513.1|1922630_1922840_-|hypothetical-protein
MLQNFIAQHKGLLFWLILSLLVCSLSITFIFEHPLSDSLSIVASVFALIALVFTSVLLVLDTILDICNP
>NZ_CP041291.1|WP_075168246.1|1921625_1922414_-|shikimate-dehydrogenase
MRKQFAVVGNPIEQSRSPELHHAFAEKTGVDLVYRKRLAPLDGFEANIREFFAEGGVGMNVTVPFKEQAFALCDVLSERAKTAKAVNTLWMQDGQLHGDNTDGQGLVDAIRALNWNLDNTEILIIGAGGATRGVIYPLVQAGVKKVVIANRTLARAEQLVADLQQAVPQAELSAIGLDALAGEFDIVINATSASLSGDALILPDALQFQHAYEMAYGKPSSFLEQAKARQIPTSEGFGMLVGQAIESFSIWNGVKPDLKDFL
>NZ_CP041291.1|WP_168369970.1|1919393_1921217_-|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein
MPAYKAPLHDIRFLMNEVFDYPAHYQTLSNGEAADPETVDMILEGAADFCENVLSPLNQTGDQEGCHFENGEVKTPKGFKEAYDQFVQSGWQGLSYPEQYGGQNLPMSLNLIKSEMMGTANWSFQMYPGLSVGCINTIIQYGTEEQKDTYLPHLVAGTWSGTMCLTEPQCGTDLGQVKTKAEPQADGTYAISGTKIFISAGEHDLTENIVHIVLARLPDAPAGTKGISLFIVPKFLPSVDGGVGERNPVTCGSIEHKMGIRASATAVLNFDNAVGYLIGEPNKGLHAMFTFMNTARIGTAIQGICHAELAFQGALPYAKERMSMRALSGKKDPEKVADAIIHHADVRRMLLTQKAIAEGGRAMIYHAAQIADKMTDALERGDTTAFEQHDDHLGFYTPILKGFLTEMGYEAANHGMQVYGGHGYIKEWGMEQIVRDSRISTLYEGTTGVQALDLIGRKVLLTSKGKVIRDYTAEILKFCGQHARNKYMRRFAWDLTKLCAQWNALTVRIMLAARKDRDIVSSASVDFLMFSGYVMMAYFWAQQAAVASAKLASNEGAETPEFYKAKIKVADFYFERLLPRTQGHAEAMVNPSKTMTALAPEHFSFDY
>NZ_CP041291.1|WP_160232297.1|1918147_1919302_+|radical-SAM-family-heme-chaperone-HemW
MAELNPASVPLSLYIHMPWCVRKCPYCDFNSHAVPDGKLSLDLEQQYLQALVADFNTQLEFAQGREIHSVFIGGGTPSLISAVGYQWLFTQLKALLPFQDDCEITLEANPGTIEHDPFAGYLAAGINRLSIGVQSFNSDHLKKLGRIHSQSDALSAIHLAREAGFQRINVDLMHGLPEQTLEQALNDLKLAVEQGATHISWYQLTIEPNTVFFRTQPVLPVDEVLEAIQEQGEAYLKANGFINYEVSAWRKERPSAHNLNYWQFGDYLAIGAGAHGKVTRPDGVYRFQKTRLPKDYLAKVPAEHGQFKRITVEEMPFEFMMNALRLNAGVDAKLYAERTGLSLDDLAPVLTSLRQRKLLVEDASRLACTEQGHVFLNSVLEEFL
>NZ_CP041291.1|WP_168370227.1|1917561_1918020_-|DMT-family-transporter
MKISSQLLLLMPLAMGIGIAMTLQTAINTQLREYLYSPLQAALFSFLVGTIVLAILVFFQQVPKPNLHEIIHLPWYMWLGGVLGVYAISLSIYAAPKLGYLTLTGLILFGQIAMSMLVDHFGVLGTEKAPINWQRLLGGVVIFIGVLLTLQR
>NZ_CP041291.1|WP_005180329.1|1932307_1933129_+|ABC-transporter-ATP-binding-protein
MNNQTPLQAPALIEVNHLSFKRGERVIYDNVSLKIRRGQITAIMGPSGTGKTTLLRLIGGQLTPDQGEVLLDGKNIGKMSRQELFAARARMGMLFQSGALFTDMTVYENVAFPIRAHTRLPEHLIAELVALKLESVGLRGAEQLMPSELSGGMNRRVALARAIALDPELIMYDEPFAGQDPIVMGVLTRLIRSLREALDLTTIIVSHDVAETLSIADYIYVVAEGKVQGEGTPEQLKQHASPFVRQFLTGSVEGPVDYQFSHQPYLSHEVHSA
>NZ_CP041291.1|WP_005180328.1|1933125_1933905_+|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE
MNAIAALGRRVIERVRGIGVATLMLLQILFSMPTWIGVKLFIYQMYRVGVMSLLIIVVSGLFIGAVLGLQMYSILVTFGSEAMLGTAVALTLLRELAPVVAALLFAGRAGSALTAEIGLMKATEQLSSMEMIGVDPLKRVISPRLWAGIFSLPMLSVIFAAVGIMGGKFVGVDFLGADEGSYWSGMESTVQFYKDIFNGTIIKSFVFALICTWIAVYQGYACEPTSEGIATSTTRTVVYSSLCVLGFDFVLTAVMFGGV
>NZ_CP041291.1|WP_005180325.1|1933904_1934576_+|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MKSRTSELAVGVFVILFGIALFFLAMRVSGLVGTTIQDSYSMTATFDNINGIKPRAKVALSGVKVGQVESITLDPVTRLATVTMILDGELTTFNQEQLQQVQQYALEELRYSSEYTEADPAQQKAMEKQLLDNMTSITNIDEDAYIMVATNGLLGEKYLKIVPGGGLNYLKRGDQISNTQSTMEIEDLVTKFVTGGAGNKSSSDNPADETSAETTDAEVSFVE
>NZ_CP041291.1|WP_171065120.1|1934642_1935227_+|ABC-transporter-substrate-binding-protein
MVAGSAFAAPTETPPAFIKKVADGLISRLKADHAKLQNNPALVKTIVRQNLDPYIDSQAFTRIVMGTYATNQYSSAAQRAQFEKNFRETLIENYGSAFAKFSNQTYTLRPYKASNSKNPVVTIDFNNKGEKIPVSFQLVDKGNQWKIRNINVSGIDLGLQFRNQFAANVKRNGGNIDKAIATFKPDAEAAVDKK
>NZ_CP041291.1|WP_045795311.1|1935238_1935526_+|STAS-domain-containing-protein
MIEYVNQELRVSGKIDFNNAEQYYQQGLQLIQQQPAPVVVNLAELEQGSTLALAVLVRWLRQTPDAQGLVFKAVPEKMMKIIQSCHLQDDLQLSA
>NZ_CP041291.1|WP_005180320.1|1935663_1936677_-|magnesium-and-cobalt-transporter-CorA
MLEAFYATERGSLEDATINGGFDLHPELVWIDLIAPSQEEQQWVMDAYRQDLPTLKSLEDISSSARFYRDDDGVLHISTYFLTKNKNYQVDDESEENSSILATVQTVAFILNRDRLLTLRGEKLVAFRAFRARARRNDYEIDYKDPTWVLLGLLEAKLDELADILEDIHKDLEKYSTEVLNNRHREMILDLDDMITRLAQLEDMLGKAQLCLIDLRRVLTFLARPRALGSHIYDADIRELSEDVRSLVEHDAFLFQKVRFLLDTTSGFINTEQNDTIRRFSILPSMLAPPMLVASVYGMNTDVLPFAKGTTSFIIVSIILIGFFIGPLIYFRWKKWI
>NZ_CP041291.1|WP_005180318.1|1936829_1937423_+|TIGR00730-family-Rossman-fold-protein
MTNSIAVFCGSALGSDAVFVDTAQLVGQTIAKQGKTLVYGGGRSGLMGVVADSALQAGGAVIGVIPEPLVDRELAHPGLTELHVVKNMHERKTKMSELSDAFIAMPGGAGTLEEIFEQWTWAQLGIHLKPNAFLNVEGFYDDLLRFIRMTTDKGFTHARFTEALIVSDSMDEILSQFERFQAPEPKWGMADRQALVK
>NZ_CP041291.1|WP_104489521.1|1937425_1937827_+|NUDIX-domain-containing-protein
MNTITVAAAIILNEQQQLLLVRKQHTECFMQVGGKLESNEPPEQTICREIAEEIGCQAQIKQFVGRFETATANEPDHRLVSYVYYVQLDQDPQVQAEIAEMKWIELEDKTTRLAPLTTEVVIPWVKQQLLQSA
>NZ_CP041291.1|WP_104489522.1|1937849_1938485_-|ComF-family-protein
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHYQPLLAGSLCELTYPRVQAIVPMPVAAERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQFQLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG
>NZ_CP041291.1|WP_168369973.1|1938471_1940517_-|ATP-dependent-DNA-helicase-RecG
MAAVHQLQGVGAAAAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLNVGRSYLLEGIVKGVDFPPGKRKSMAILLDDDSAKVTLRFYHIYKGLTDRAKVGNRLRVFGEVRVGARGLEMYHPEIQLISEHTPLPKTQLTAIYPSTEGLTQSKLRDYVKQALKQHSDDLPELLPEKFTNGYALKQALEYIHEPPTSANMLQLGQGSHPAQQRLIFEELVAHQVSLLTRRAYIQQIEAPAFAPSQHLAKQLLAGLPFSMTGAQKRVSKEIIQDLKQNKPMLRLVQGDVGAGKTLVAAVAACHALEEGWQVALMAPTEILAEQHYLNFKRWFEPLGLTVSWLSGKQKGKARASAEQIIQDGSAQLVVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGLNHMTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREQVLQRIASNCAEGKQAYWVCTLVEQSETLDAQAAEATFAEIKERFPELNIGLVHGKMKADDKQAVMQQFKDNQLQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCALLYKHPLSQNGQERLRILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVAKLERDDHLLNQAHYVAQQMLKDYPEQAEALLKRWLPEAPRYAYV

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Crispr_ID: NZ_CP041291_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041291_4

3075834-3075919

TypeV

Consensus_repeat	Method
GCAGCCCATGCCAGCGGCAATGC	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP041291_4

>merge|NZ_CP041291|4|3075834-3075919|CRISPRCasFinder
GCAGCCCATGCCAGCGGCAATGCGCATGAATTTACATCCGAAGAAGCGCGTGAAGCCGGCCGCGCAGCCCATGCCAGTGGCAATGC

>NZ_CP041291|4|4|3075834-3075919|CRISPRCasFinder
GCAGCCCATGCCAGCGGCAATGC	GCATGAATTTACATCCGAAGAAGCGCGTGAAGCCGGCCGC
GCAGCCCATGCCAGTGGCAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041291.1\|WP_075166617.1\|3073163_3073403_-\|DUF2171-domain-containing-protein	unknown	unknown	gnl\|CDD\|370756
NZ_CP041291.1\|WP_081410039.1\|3070427_3071846_+\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP041291.1\|WP_104483720.1\|3071945_3072110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041291.1\|WP_075166622.1\|3082538_3083669_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP041291.1\|WP_075166618.1\|3074061_3075303_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
NZ_CP041291.1\|WP_171293522.1\|3068969_3070127_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239583
NZ_CP041291.1\|WP_075166613.1\|3067923_3068946_+\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|99812
NZ_CP041291.1\|WP_104473128.1\|3063566_3064481_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176136
NZ_CP041291.1\|WP_005178072.1\|3064772_3066155_+\|aromatic-acid/H+-symport-family-MFS-transporter	unknown	unknown	gnl\|CDD\|273327
NZ_CP041291.1\|WP_005178046.1\|3078273_3079083_+\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|376497
NZ_CP041291.1\|WP_075166621.1\|3081441_3082542_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP041291.1\|WP_168369713.1\|3076197_3077265_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP041291.1\|WP_075166620.1\|3079145_3080900_+\|bifunctional-protein-serine/threonine-kinase/phosphatase	unknown	unknown	gnl\|CDD\|270916
NZ_CP041291.1\|WP_075166624.1\|3084810_3086292_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP041291.1\|WP_045795652.1\|3087917_3088526_-\|MarC-family-protein	unknown	unknown	gnl\|CDD\|225006
NZ_CP041291.1\|WP_075166623.1\|3083668_3084799_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP041291.1\|WP_075166616.1\|3072191_3073061_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187613
NZ_CP041291.1\|WP_005178047.1\|3077531_3077981_-\|cyanase	unknown	unknown	gnl\|CDD\|235079
NZ_CP041291.1\|WP_168370192.1\|3066261_3067551_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041291.1\|WP_075166626.1\|3088538_3090575_-\|choline-transporter	unknown	unknown	gnl\|CDD\|236635

Protein	Function_ID	Function_description	E-value
NZ_CP041291.1\|WP_075166617.1\|3073163_3073403_-\|DUF2171-domain-containing-protein	gnl\|CDD\|370756	pfam09939, DUF2171, Uncharacterized protein conserved in bacteria (DUF2171). This domain, found in various hypothetical prokaryotic proteins, has no known function.	9.62572e-25
NZ_CP041291.1\|WP_081410039.1\|3070427_3071846_+\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	8.03614e-17
NZ_CP041291.1\|WP_075166621.1\|3081441_3082542_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	6.01728e-30
NZ_CP041291.1\|WP_075166622.1\|3082538_3083669_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.68564e-25
NZ_CP041291.1\|WP_075166618.1\|3074061_3075303_+\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.56523e-82
NZ_CP041291.1\|WP_171293522.1\|3068969_3070127_+\|fatty-acid-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	1.02662e-49
NZ_CP041291.1\|WP_168369713.1\|3076197_3077265_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.45002e-30
NZ_CP041291.1\|WP_104473128.1\|3063566_3064481_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176136	cd08445, PBP2_BenM_CatM_CatR, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold. This CD includes the C-terminal of LysR-type transcription regulators, BenM, CatM, and CatR, which are involved in the benzoate catabolism. The BenM and CatM are paralogs with overlapping functions. BenM responds synergistically to two effectors, benzoate and cis,cis-muconate, to activate expression of the benABCDE operon which is involved in benzoate catabolism, while CatM responses only to muconate. BenM and CatM share high protein sequence identity and bind to the operator-promoter regions that have similar DNA sequences. In Pseudomonas species, phenolic compounds are converted by different enzymes to central intermediates, such as protocatechuate and catechols. Generally, unsubstituted compounds, such as benzoate, are metabolized by an ortho-cleavage pathway. The catBCA operon encodes three enzymes of the ortho-pathway required for benzoate catabolism: muconate lactonizing enzyme I, muconolactone isomerase, and catechol 1,2-dioxygenase. CatR normally responds to benzoate and cis,cis-muconate, an inducer molecule, to activate transcription of the catBCA operon, whose gene products convert benzoate to catechol. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.62955e-93
NZ_CP041291.1\|WP_005178047.1\|3077531_3077981_-\|cyanase	gnl\|CDD\|235079	PRK02866, PRK02866, cyanate hydratase; Validated.	8.00951e-96
NZ_CP041291.1\|WP_005178046.1\|3078273_3079083_+\|formate/nitrite-transporter-family-protein	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	1.81739e-68
NZ_CP041291.1\|WP_075166613.1\|3067923_3068946_+\|ferredoxin-reductase	gnl\|CDD\|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.75542e-78
NZ_CP041291.1\|WP_075166626.1\|3088538_3090575_-\|choline-transporter	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
NZ_CP041291.1\|WP_075166620.1\|3079145_3080900_+\|bifunctional-protein-serine/threonine-kinase/phosphatase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	6.4219e-56
NZ_CP041291.1\|WP_075166624.1\|3084810_3086292_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	6.71839e-20
NZ_CP041291.1\|WP_045795652.1\|3087917_3088526_-\|MarC-family-protein	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	1.68689e-13
NZ_CP041291.1\|WP_075166623.1\|3083668_3084799_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	2.59186e-32
NZ_CP041291.1\|WP_075166616.1\|3072191_3073061_-\|SDR-family-oxidoreductase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.40507e-152
NZ_CP041291.1\|WP_005178072.1\|3064772_3066155_+\|aromatic-acid/H+-symport-family-MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.29895e-116

>NZ_CP041291.1|WP_075166618.1|3074061_3075303_+|MFS-transporter
MDNFLEWDALFLEGGTYMLFSKTTVVDASAQLNAQGLATKLSFFGLGLSTASWAPLIPFAQQRLSLNHADFGLLLLCMGIGSMLAMPAAGLLIQRIGCRILIGIALVAAMIILPLLTVFGTALSMAIVLFIFGTAVGVFGVAINLQAVIVEKNSLKNMMSSFHGMCSLGGLLGVLTVTVLLSLGVSPLMSALIMSGVLAFIAILAVPNSLSEIEKKSDTATEDTAPSAKQKFRPSPMILLIGLVCFIAFLSEGSAMDWSGIYLVSNFGMDASFAGLAYTFFAITMTIGRFSGRRLLRMWGEKNIITYSALCAALGLGIIVMAPHWAVVLLGYALLGFGCSNIVPVMFSRVGRQNIMPKAAALSLVSTIAYSGSLSGPALVGFLSEAIGLSTVFALVALLLLSIAVLNRFTQVD
>NZ_CP041291.1|WP_075166617.1|3073163_3073403_-|DUF2171-domain-containing-protein
MADINLNNIQKHSEVITSCGTHVGTVDHLEGSDKIKLTKQDSGDGMHHYIPTSWMEEIRGNQIILNKNSEEVTRQWEAV
>NZ_CP041291.1|WP_075166616.1|3072191_3073061_-|SDR-family-oxidoreductase
MNHYPDSPSPQEKQEHQPGVQYKMTPEPEIIKSNYQGSQKLKDKVALITGGDSGIGRSVAVLFAREGANIIIPYLEEDQDAQDTKRLVEQEGRQCLLIQCDLRQHAAVQQMVDLALQQFPHINILVNNAAVQYPQKTIEDINPEQLHKTFETNLYPLFYVTQLLIPQMQPGDSIINTTSITSYQGHNELIDYASTKGAITAFTRSLSTNLLKNKTGIRVNGVAPGPIWTPLIPSSFDEEQLKGFGEDTPMGRMGQPSEVAPAYLFLASDEASYISGQVIHVNGGTVVNG
>NZ_CP041291.1|WP_104483720.1|3071945_3072110_-|hypothetical-protein
MSRGDKSAYTDKQKRQARHIIESEKERGHSEEEAERIGWSIVNKQDGGGKKKSH
>NZ_CP041291.1|WP_081410039.1|3070427_3071846_+|iron-containing-redox-enzyme-family-protein
MENNKMSVVSQNSYRPLKLERQKSYRELFHFFLDESTPAPEKEKLSAQLLQRELHQIDPTSIPLPDEPVQIKDWLFQQNMQNCERYQQYLSRRQAGGQREYFQHVAAAYDFLVKVAPVKYVDGSWLYSTLKHWPDPNFQHLIMIYLEELGLGSAKANHVSMYQQLLSSLNLQDLVEGLEDEYYYQPVVQLALAYAPQQYLPEVIGFNLGYEQLPLHLLISNYELAELGLDHQYFNVHITIDNLDNGHAHRSVAALEYAYSQAANKTEFIDKLKRGYALNDVGLGSTEIIKNSDLTPLIEKIFKKKAVVGKLIHNNRCRFAQASVNEWLSNDQKVVEFLQVLQDKQWIKRGQHPSESRFWQLIHNEEGKMFGVFSVAEQQIIYDWIAQAYTERRAPFKAVTPVQQVDDYIVDYFNSSEQQALQQQLKLARSAEEKINLLLPYLAPHQHHNPIGLWATRQLTQFLFPQALQQIQ
>NZ_CP041291.1|WP_171293522.1|3068969_3070127_+|fatty-acid-desaturase
MPAALHPNSKSKYLTEVQIQEFGAKVEAIRREVMDDLGEKDAQYIYKIRNFVRYSEIASRGMLMFGGWIPPVWLLGTGLLGLSKIVENMELGHNVMHGQFDWMNDPTLNGASYDWDTIATGDDWKYTHNYIHHTYTNIVDKDHDVGYGLLRVSEAQKWEPRFLMNIPLAIQLMVFFEWYVGLQRLHLEDVLVYKTKTWKQVWDEAAGLRKKMRRQVVKDYVFFPLLAGPNAIPVFAGNAVANVIRSLWASAVIFNGHFTEDAENFEADNTENESRAEWYIRQIRGSSNFSGTQWLHILSGNLSHQIEHHLFPDMPANRYAEVAPKIKALCAEYGIHYNEANFIQQFSSVWVRLAKCSLPNHWHDKIGQGSNLIRTGLAQLKAKFQ
>NZ_CP041291.1|WP_075166613.1|3067923_3068946_+|ferredoxin-reductase
MSTSVEYKPEWIREDFIDFIAEKINPVWALKKVKACVVEIQALSPDFYKIHLRPNQNFQAQRFQAGQSILVTLAMNGVRQQRSYSIVTLLDNGDVILAIKRQGKMSNALTRLPAGAVVELSQPQGNFVLPAPVPSLCFIASGSGITAIYSLLQKAVVSSTQPIDLLYFTRDDAFHAEIKTLALMYPHFKYHHFNTVEQHQHLSLSLLQNTVEQLGERHIYACGSASMMQAAQQICQQLDLSEQFHSEYFQMTADATLEAQPVQFLRSQQDFQANSNLLDSAEAAGLRPAHGCRMGICNTCSCTKVSGSVRNLLTGEIDHNHNTQIKLCVTQAISPVVINL
>NZ_CP041291.1|WP_168370192.1|3066261_3067551_+|hypothetical-protein
MKTMMIKPLVIAVGLTMSVMANAQSSQEVEQLRQEVQQLKALVHQYAQQNQTVQENLNQLANTAVQPPVAQKASTEKRGLGMTLGNAEFNLYGNVRMDGSYQIEGGAKDMPYNQINGVALEGNAENSDRFRSTLAATRLGLDFKTQVGAEDVKGKLEVDFLGGNLDSLRIRHAYLTYADWLIGQTWSNFAVPDYMPETVDALAYAGGAVKRTPQVRYTAKFSPQTNLVVAAEDPKDNSITQRLPALTARLNHQFADNMSVSARAMGHEKRINSDEEMAWGVGLGAKYDVTPSTTLKADYYHVKGDSSFVSFANTGTIQGANGLEQSEFDSITVGLTQKFNEKLRGTVGYGYMSFDQDADYLAATPADKRTGVNKDLWQAWANVFYSPIKPVSLGLEYVYGEREAVVPPAANGSKTGEDNRINMVAIYNF
>NZ_CP041291.1|WP_005178072.1|3064772_3066155_+|aromatic-acid/H+-symport-family-MFS-transporter
MNTTDSVNINTVVDNAKFTPFHWGVLLWCLLIIIFDGYDLVIYGVALPLLMQEWSLGAVEAGLLASTALFGMMFGAMSFGTLSDKLGRKKTIMICVAIFSGFTFLGAFASNPIEFGILRFLAGLGIGGVMPNVVALMTEYAPKRIRSTLVAVMFSGYAIGGMTSALLGAWLVADYGWKIMFYLAGTPLLLLPLLWKFLPESLMFLTKKGETEQVRTFVQKIAPEQNIAPNTQFVLNEVMAGDEAPLRALFQQGRTFSTLMFWVAFFMCLLMVYALGSWLPKLMIQAGYSLGASMLFLFALNIGGMVGAIGGGALSDRFHLKPVLTIMFTVGAIALILLGFNSPQPVLYTLIAIAGAATIGSQILLYTFVAQFYPTTVRSTGMGWASGIGRIGAIVGPVLTGALLTLNLPHQMNFMMIAIPGLIAAVAIFMVNLKVSVDGAKAKQESFANSNVKAVKSSAH
>NZ_CP041291.1|WP_104473128.1|3063566_3064481_+|LysR-family-transcriptional-regulator
MELRHLRYFVAVVEEQSFTKAAEKLFIAQPPLSRQIQNLESELGIQLFERGSRPLQTTPAGQFFYQHAVKLLSNAEEIKTMTKRVGMVEKTVTIGFVGSLLYGLLPRIVYLFRQQHPNLKIELVEMTTTNQIQALKEGRIDVGFGRLRISDPAIRRILLREEPLMVAVHDSHIFATKRQGIYLSDIVEENIFLYPNHPKPNFSTQVRGLFSEYSLEPRSLKEVREIQLALGLVAAGEGMCIVPESARTIQLPHLNYIPLLDDAAKSPIFLAIRSMDESEDIRSLFDSIYQVYDLEAIKYDRTVI
>NZ_CP041291.1|WP_168369713.1|3076197_3077265_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MKTLKLRIKDKHCKVLDQLASEVNFVWNYVNDLCFKHLQRKQQFFSAYDIAKYTKGASKECNLHSQTIQAVTEELVTRRKQFKKSKLRWRVSNKKSARRSLGWIPFKKVAIKYADGYVQYGKHQFKLWDSYGLSKYSIKTGSFVEDSRGRWYVCLVVDSPKQDKPTATKAVGIDLGLKDIATCSDGTIISNPKFYHQYEQKLGIAQRARNKKRVRALHAKIANCRKDYLHKASTQLVKDNALIVVGDLRANKLVKTKMAKSVLDTGFSALKTMLKYKCENAGVMFEEVNERFTTQTCSSCGAITASSPRGRADLRIRVWECECGSVNQRDLNSAKNILALGHKRLAVGITLLSGG
>NZ_CP041291.1|WP_005178047.1|3077531_3077981_-|cyanase
MISHRQQVTDMILSAKVLNNIQWSSVAQEIGLSKEWVTAACLGQMALNKEQAEKIGQIFNLSDEAVAWLQIVPYKGSLPTSVPTDPLIYRWYEVVNVYGSTIKELIHEEFGDGIMSAIDFSMDIQRESHENGDRVNVVLSGKFLPYKSY
>NZ_CP041291.1|WP_005178046.1|3078273_3079083_+|formate/nitrite-transporter-family-protein
MAYLAPSEFATKVVDAGESKLHMANRDVLIRATMAGAILALAAVFAVTIAVQTGVPLIGALLFPVGFCMLYLLGYDLLTGVFVLTPLAWLDKRPGVTWARILKNWGVVFVGNFTGALIVAVMMAAVYTYGFSTEPNKVGLAIAHIGEDRTLGYKEYGVAGWITIFIRGMLCNWMVSLGVIGAMMSTTVSGKFIAMWMPIMLFFAMGFEHSVVNMFLFPFAMMMGGDFSVMDYFIWNELPVALGNLVGGLALTGLALYTTHVRTAPKREF
>NZ_CP041291.1|WP_075166620.1|3079145_3080900_+|bifunctional-protein-serine/threonine-kinase/phosphatase
MSTLPSSHQTSLQIRLGQYSAAGRKESNQDFHGAAVPEGYLAQQKGIACAIADGISSSNVSHIASETAVSSFLADYFSTPDSWSVKTSVDRVIRATNSWLYAQTQQSQGRVDKDRGYVCTFSALVFKHETVHLFHIGDARIYRLREQQLEQLSVDHRVWLSSRESYLSRALGVAQKVEVDYLSLPLAQDDIFLLMTDGVYEYLSDSQIIEALHSPETLDLDQVAEMLVHLADAQGSPDNLTLQIVQVQQLPQQAQSQFQPSHNQLSLTPDLSIGQQFEGYRIQNVLHQNHRSRLYLAWDETRQQQLVIKIPSLDLTQDAQALERFLLEEWVAKRIQHPQVLAAYPHQRSKSYYFQTYEYLSGQTLNTWLHQQRQPIALETAIQITEQIIKGLQAFHRLDMLHQDIRPENIMLNAQLEPKLIDFGATLVKGISEFQSQHAAALGTLAFMAPEYFCSRPVSTRSDQFSLAVVLYYVLSKQLPYGTELARCQTLKQLKTVRYHSILEYRPDIPVWIDGALHKALALMPNERYEVLSEFLYDLKHPNRYFLKPVQSSLLDKNPVRFWQAVSAMLFLCLLLSLALMFSV
>NZ_CP041291.1|WP_075166621.1|3081441_3082542_-|ABC-transporter-permease
MKSLWFYYLQSFKDIVSHGTIFTTLILSVLFYSFFYPTAYQAQQAEALPIIIVDEEQSSLSTRIIGQVAQSPNVEIQAITGNFAEAKQWVESQKADGILLLPDNLSQSLRHGETGGIGLYLSTANFLVTKQIGLGLATSVEQTLADYTERFGEVSDFSPTLSVHQIPLFNPLSGYGSYVFPAVAPLIIHQTILLGLSMLILVYRERKVELNANAFIGMCLAVFTIGCLGCFYLFGFSFWLFDYPRGGNLFGMLLAVPVFIYTIIGMTCLFASFLDLPERAGHVIVFTSIPLFFLSGAAWPHAAMPIWMQVVGEILPSTQIVQMFIQLNQMGVPNALVLPKLLYLGMIGSLCFFLAYRRLISNCGTF
>NZ_CP041291.1|WP_075166622.1|3082538_3083669_-|ABC-transporter-permease
MWTGIWRELRYLLSEKWDLCLVTLAPALVIILFSSMFAQGKPDHLPIAIIDQDQSALSQSIYQHVALNHTLKIATVSEQTAEIERLLNQNKIWGYIHIPSGAEQRLVRAQDADISIAFNQSYFSIGNTISSAMLVSTLQALAEFSGEQYLGNRLPSLEAPSPHIKISPLYNPQLNYELYLEPYVIPAILHLLLCCCVAFSVGQELKRQTLTSWISNSSIWIALLSKNMVYVAIFSLWTWVWMFWLIEIRGWFVAGSLALILSAQFLLYSAYAFLSSAVVLATKDLSKSFGIIAVYGGSSLSFAGVTLPLNNAPLFTQFWANIIPFTPYAKLQTEQWVIGSPLHISLQAGLMLLIYALAYALLAYLFLKKIAKGAVQ
>NZ_CP041291.1|WP_075166623.1|3083668_3084799_-|HlyD-family-secretion-protein
MNEDQKHNDPVNEAASSSDTEKSPAQQVETKTEIENNATTSTEQQQAPEIAKKKKYLLLALIPVLLAVIAFGLWKSYQPAPLELQGRVEAETVQVATKVPSRIEEIYVEEGQRVKKGDVLVRLNSPEIQAKKQQAVAALQSALALQSTAERGSQEENIASLYANWQSLKAQQNLAKVSYERGANLLKEGVISRQRRDELYAASQSAAQMTEAAYQQYARAKRGSTSQQKSSADAQVDIAQAALDEANALEAETQLVAPVNGTVSKTYGKVSELVATAVPVVSLIEDQMWVSLNIREDQYAPFQKMSSIEGYIPALDKTATFKIKQISAEGEFATIKTTRQTGGYDVRSFKLHLVPTPAIPELKVGMSVLFKLKETR
>NZ_CP041291.1|WP_075166624.1|3084810_3086292_-|TolC-family-protein
MNSKKNKRQLVWGLNLLASMMYGSFAHAQSISFQDAERQLLQNSYSSQAYQSLEQASKLEAEAVKGVGLPRVDLNVRAYAFHSEVDIPLKQFKNNLENSLSQGVNGRLNEWEASNGVDLPAGITDPLRDGLNNTIHSGVGLIPDTSNVILEDQVIRPTVSVIMPIYTGGLTRSAKEIANIQVGRSQLSNKQQQDTQRFELIQSYFNVQLQKQLHAAALFNLNAMQQHYRNALKLEQQGFISKGQRMQFEVARNNAERSQQNTQANLNAALFQLNNLLQESSITELSTPLFVNKTEPQALNHLLKTFNQNSALIQKMQLDTQLAQANVKAQQAAKKPNIFAFGEYSLDQNENWIVGVAARYNLFSGIDKNKNIQAAELKRSATELLTARTQQEIENLIYKSYSEALSAQQSDALLAQNLKAAQENLRIQELSFKEDMGTAIQVIDAQNMLSGLRAETALNAYKYVMSLATLLQSHGSIAEFPNYIQHTNTHYIR
>NZ_CP041291.1|WP_045795652.1|3087917_3088526_-|MarC-family-protein
MSESLHAFALFFSLLNPFLMSIYMLGIIRNSEARVFNRALIQGSLISFVVFIIFAKTGEAFFHDVLHVRFESFQIFGGIIFLVIGYRYVFEGADTIGVMRGAPHHLAGTIAMPFMIGPGTISAAVITGIQLNLWQLVLVIFVTLFLTCSLLILMKYAHDHLQHKHSNYIDLYVDIVGRLAALLIGTIAIDMIVTGVSGIMQS
>NZ_CP041291.1|WP_075166626.1|3088538_3090575_-|choline-transporter
MQKKTEQTTDSLNKVVFFLSATLILLFSLVTILFNNQANQLITQILNWVSRTFSWYYLLAATLYLVFVLFIALSRYGDIKLGPKHSKPEFSLLSWSAMLFSAGIGIDLMFFSVAEPLSHYMSPPVGEAETFEAARQSMVWTLFHYGLTGWSMYALIGVALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHTVDTAAVLGTIFGIATTCGIGVVQLNYGLHVLFGLPENIWIQTALIGVAVIITIISVTAGVNKGIRVLSEINIYVSIGLLLFILFMGNTEFLLAALIQNFGDYLSQFPKLSLSSFPFEQPKEWMNSWTLFFWAWWIAWSPFVGLFLARISRGRTIREFVTGTLVIPLLFTLTWLSIFGNSALYSVIFDGNTQLATTVLENPAHGFYDLLAQYPGFTFLAGVATITGLLFYVTSADSGALVLGNFTTKFTNIEHDSPRWLSVFWAIAIGLLTLAMLMANGVTALQNTTIIMGLPFSFVIFFVMAGLYKSLRLEDFRQASTSLNAAPVVGNVDILNWKKRLSRVMLHPSLSQTRTMLDNVCKPAIEAVATELIDKGIQVNIQEKPLEEEPELYHLDLTIQLDEEENFVYEIWPVRYDTPNFSSRGKRTKRYYYRLESYLFEGSQGNDLVGYSKEQVINDILDKYERHLMFLHINRISPGKRPLFPDPDQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12475 : 60896

uncultured_virus(28.57%)

transposase,plate,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168369486.1\|12475_13816_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_104484630.1\|13921_14689_-	OmpA family protein	NA	NA	NA	NA
WP_075167762.1\|14690_15650_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_127801016.1\|15681_19497_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_168369487.1\|19537_20956_-	hypothetical protein	NA	NA	NA	NA
WP_104487540.1\|20952_21948_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_075175233.1\|21911_23717_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_045795669.1\|23728_24205_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_005177807.1\|24272_24776_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_005177804.1\|24820_26302_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_045795670.1\|26294_26798_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_104484626.1\|26818_27457_-	hypothetical protein	NA	NA	NA	NA
WP_104484625.1\|27847_30526_+	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.4e-78	29.5
WP_104484624.1\|30545_31661_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_005177795.1\|31666_33031_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_104471483.1\|33043_33850_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_075175229.1\|33864_34509_+	hypothetical protein	NA	NA	NA	NA
WP_075175228.1\|34505_35468_+	M15 family metallopeptidase	A0A0H3V0Q8	Geobacillus_virus	4.9e-10	32.1
WP_075167767.1\|35481_36246_-	alpha/beta fold hydrolase	A0A023W7H4	Mycobacterium_phage	1.4e-07	35.7
WP_075167751.1\|36386_37262_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_075167750.1\|37258_37681_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_104494754.1\|37682_38099_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_005177777.1\|38594_39341_-	hypothetical protein	NA	NA	NA	NA
WP_104487545.1\|39344_39602_-	hypothetical protein	NA	NA	NA	NA
WP_005177772.1\|40665_41121_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_005177770.1\|41137_41560_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_168369488.1\|41577_42942_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_171294572.1\|43006_43498_-	hypothetical protein	NA	NA	NA	NA
WP_075167748.1\|43695_45183_+	amidase	NA	NA	NA	NA
WP_104487549.1\|45231_46392_-	MFS transporter	NA	NA	NA	NA
WP_158650429.1\|46828_47194_-	hypothetical protein	NA	NA	NA	NA
WP_075167746.1\|47347_47932_+	hypothetical protein	NA	NA	NA	NA
WP_005177751.1\|48865_49102_-	hypothetical protein	NA	NA	NA	NA
WP_075167745.1\|49504_49837_-	hypothetical protein	NA	NA	NA	NA
WP_005177747.1\|49955_50099_-	hypothetical protein	NA	NA	NA	NA
WP_005177745.1\|50275_50509_-	hypothetical protein	NA	NA	NA	NA
WP_104470139.1\|50718_51201_+	CinA family protein	A0A218MNG4	uncultured_virus	4.7e-22	38.1
WP_104470138.1\|51275_51896_+	aminotransferase	NA	NA	NA	NA
WP_045795691.1\|51973_53113_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_045795692.1\|53117_54002_-	methylisocitrate lyase	NA	NA	NA	NA
WP_075167741.1\|54228_54879_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005177730.1\|54993_55908_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_104500598.1\|55986_57279_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.8e-37	29.6
WP_016658171.1\|57598_58072_+	hypothetical protein	NA	NA	NA	NA
WP_168369489.1\|58155_58509_-	YnfA family protein	A0A218MNG8	uncultured_virus	1.1e-28	59.4
WP_005177712.1\|58619_60896_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-165	43.8

DBSCAN-SWA_2

558117 : 567898

Acinetobacter_phage(42.86%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127800987.1\|558117_558705_-	TerD family protein	K4JRX3	Caulobacter_phage	1.3e-13	31.2
WP_127800985.1\|558732_559449_-	TIGR00266 family protein	NA	NA	NA	NA
WP_168369652.1\|559467_560688_-	TerD family protein	NA	NA	NA	NA
WP_127801911.1\|560802_561381_-	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	39.7
WP_127800979.1\|561415_562492_-	DUF475 domain-containing protein	A0A172Q0Y5	Acinetobacter_phage	1.6e-86	52.6
WP_127800977.1\|562510_563086_-	TerD family protein	A0A2P1N0L4	Streptomyces_phage	1.3e-07	37.5
WP_127800975.1\|563471_564593_+	phosphoribosyltransferase domain-containing protein	A0A172Q0Y1	Acinetobacter_phage	1.3e-33	28.7
WP_127800973.1\|564585_565365_+	hypothetical protein	NA	NA	NA	NA
WP_168369653.1\|565357_566506_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	1.3e-41	33.5
WP_171457099.1\|566517_567444_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_127800966.1\|567508_567898_-\|transposase	IS200/IS605 family transposase	Q38463	Halobacterium_phage	3.1e-08	34.2

DBSCAN-SWA_3

635781 : 641705

Acinetobacter_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171065072.1\|635781_636357_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	A0A0P0IKJ1	Acinetobacter_phage	1.0e-103	93.7
WP_168369668.1\|636376_637423_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.0e-166	86.8
WP_168369669.1\|637440_638247_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	9.0e-127	85.1
WP_005176474.1\|638453_639137_+	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	7.0e-88	75.5
WP_005176473.1\|639230_639779_+	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	3.4e-93	95.1
WP_005176472.1\|639875_640232_+	DUF861 domain-containing protein	NA	NA	NA	NA
WP_168369670.1\|640343_641705_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	9.9e-17	32.8

DBSCAN-SWA_4

736764 : 794650

Vibrio_phage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075168103.1\|736764_738147_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_075168104.1\|738151_738751_-\|transposase	IS607 family transposase	Q331V0	Clostridium_botulinum_C_phage	1.9e-60	55.4
WP_104501037.1\|738750_739392_-	hypothetical protein	NA	NA	NA	NA
WP_045796449.1\|739531_740584_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_104488034.1\|740655_741639_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_104488032.1\|742099_743998_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.4e-55	29.8
WP_016659909.1\|744034_745318_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_035363052.1\|745396_747109_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_016659907.1\|747114_747693_+	outer membrane lipoprotein LolB	NA	NA	NA	NA
WP_075174418.1\|747705_748536_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_005176171.1\|749006_749960_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	5.6e-43	38.9
WP_005176167.1\|750059_750356_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_016659905.1\|750375_750960_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_005176160.1\|751094_751475_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_168369686.1\|752212_752704_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_075167533.1\|752903_753836_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_168369687.1\|754045_754348_+	hypothetical protein	NA	NA	NA	NA
WP_160243472.1\|754422_755037_+	VTT domain-containing protein	NA	NA	NA	NA
WP_127799632.1\|755076_755484_+	hypothetical protein	NA	NA	NA	NA
WP_075174415.1\|755778_756339_+	hypothetical protein	NA	NA	NA	NA
WP_005176137.1\|756398_756923_-	YecA family protein	NA	NA	NA	NA
WP_005176134.1\|756992_757199_-	hypothetical protein	NA	NA	NA	NA
WP_168369688.1\|757573_759460_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.5e-39	34.6
WP_004972250.1\|759573_759867_+	DUF493 domain-containing protein	NA	NA	NA	NA
WP_005176127.1\|760006_760666_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_160241544.1\|760747_761281_+	hypothetical protein	NA	NA	NA	NA
WP_127799636.1\|761282_762467_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_005176119.1\|762737_764135_+	APC family permease	NA	NA	NA	NA
WP_005176117.1\|764290_764770_-\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_168369689.1\|765009_766392_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_016659896.1\|766473_767745_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.9e-96	53.9
WP_104500587.1\|767863_768697_-	DUF3298 domain-containing protein	NA	NA	NA	NA
WP_016659894.1\|769278_769971_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_005176106.1\|770189_770441_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_005176105.1\|770460_770772_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_168369690.1\|771215_772193_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_005176092.1\|772211_774263_+	site-specific recombinase	NA	NA	NA	NA
WP_005176089.1\|774415_775030_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_075167548.1\|775059_776325_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_127801498.1\|776338_779518_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_104488027.1\|779517_780975_+	multidrug efflux RND transporter AdeIJK outer membrane channel subunit AdeK	NA	NA	NA	NA
WP_005176080.1\|781278_781635_+	YbjQ family protein	NA	NA	NA	NA
WP_005176078.1\|781638_782073_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_075167550.1\|782120_782924_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_104488026.1\|782944_783640_-	hypothetical protein	NA	NA	NA	NA
WP_104473728.1\|783824_786719_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	7.7e-144	36.4
WP_104473729.1\|786906_787683_-	hypothetical protein	NA	NA	NA	NA
WP_075174403.1\|787890_788187_-	endonuclease domain-containing protein	NA	NA	NA	NA
WP_075174402.1\|788279_789464_-	molecular chaperone DnaJ	NA	NA	NA	NA
WP_168369691.1\|789974_791126_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_160255431.1\|791447_792839_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A2I7RKG5	Vibrio_phage	7.0e-10	24.1
WP_016658435.1\|792911_793361_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	2.1e-32	49.2
WP_075175383.1\|793429_794650_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.9e-85	81.2

DBSCAN-SWA_5

1555439 : 1607741

Helicobacter_phage(18.18%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023274418.1\|1555439_1555889_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	7.2e-33	50.0
WP_160255431.1\|1555961_1557353_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A2I7RKG5	Vibrio_phage	7.0e-10	24.1
WP_016658900.1\|1557565_1557853_-	chorismate mutase	NA	NA	NA	NA
WP_005181177.1\|1557833_1559156_-	hypothetical protein	NA	NA	NA	NA
WP_005181175.1\|1559235_1560921_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_067731511.1\|1561214_1561418_-	hypothetical protein	NA	NA	NA	NA
WP_104505694.1\|1561617_1563447_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_104500438.1\|1563870_1564833_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.7e-07	36.3
WP_163143347.1\|1564829_1566134_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_005181164.1\|1566213_1566324_-	methionine/alanine import family NSS transporter small subunit	NA	NA	NA	NA
WP_104472808.1\|1566325_1567813_-	sodium-dependent transporter	NA	NA	NA	NA
WP_171503194.1\|1568338_1569814_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_168369881.1\|1569927_1570611_+	TIGR04219 family outer membrane beta-barrel protein	NA	NA	NA	NA
WP_005181158.1\|1570690_1572052_-	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_075168102.1\|1578403_1580308_-	5'-nucleotidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_005181154.1\|1580415_1580688_-	hypothetical protein	NA	NA	NA	NA
WP_075168103.1\|1580709_1582092_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_075168104.1\|1582096_1582696_-\|transposase	IS607 family transposase	Q331V0	Clostridium_botulinum_C_phage	1.9e-60	55.4
WP_104501037.1\|1582695_1583337_-	hypothetical protein	NA	NA	NA	NA
WP_168369882.1\|1583901_1585134_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_168369883.1\|1585197_1586325_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_005181144.1\|1586396_1586732_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	1.2e-24	51.5
WP_171065126.1\|1586854_1587823_-	hypothetical protein	NA	NA	NA	NA
WP_016659761.1\|1588167_1589178_-	hypothetical protein	NA	NA	NA	NA
WP_075168120.1\|1589435_1590443_-	RND transporter	NA	NA	NA	NA
WP_168369884.1\|1590675_1592613_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	6.9e-64	30.6
WP_005181133.1\|1592923_1594087_+	glutathione-dependent formaldehyde dehydrogenase	A0A1E1EWH3	Acanthamoeba_castellanii_mimivirus	2.3e-14	26.1
WP_075168109.1\|1594139_1596608_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	2.9e-115	35.0
WP_005181126.1\|1596650_1597733_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_016659767.1\|1597757_1598906_-	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	1.5e-45	32.8
WP_005181121.1\|1599016_1600396_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_000831329.1\|1601056_1601191_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_005181120.1\|1601219_1601612_+	ribonuclease P protein component	NA	NA	NA	NA
WP_168369885.1\|1601621_1601942_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_005181113.1\|1601947_1603717_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_168370220.1\|1603812_1605168_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_005181102.1\|1605442_1605778_+	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_168369886.1\|1605827_1607219_-\|transposase	transposase	A0A2I7RKG5	Vibrio_phage	5.6e-07	22.9
WP_023274418.1\|1607291_1607741_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	7.2e-33	50.0

DBSCAN-SWA_6

2615632 : 2624486

uncultured_Caudovirales_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045794839.1\|2615632_2616766_+	toxic anion resistance protein	K4F9M7	Cronobacter_phage	2.8e-17	22.8
WP_168370138.1\|2616809_2617724_+	hypothetical protein	NA	NA	NA	NA
WP_168370139.1\|2617924_2619490_+	alkyl hydroperoxide reductase subunit F	A0A1W6JK46	Lactococcus_phage	1.1e-24	30.2
WP_005179080.1\|2619626_2619881_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	2.0e-16	46.6
WP_104473417.1\|2619884_2621276_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.8e-131	64.9
WP_075166952.1\|2621420_2621849_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-40	60.6
WP_005179068.1\|2621933_2622251_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	7.9e-26	64.4
WP_016659186.1\|2622255_2622729_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	3.0e-37	53.8
WP_005179062.1\|2622732_2623782_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_104501016.1\|2623781_2624486_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.2e-92	70.5

DBSCAN-SWA_7

2741400 : 2751969

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075174381.1\|2741400_2743539_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	1.1e-25	23.5
WP_168370153.1\|2743535_2744720_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_168370154.1\|2744824_2745424_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.7e-21	39.6
WP_171525663.1\|2745437_2746034_+	acyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	1.5e-09	50.8
WP_168370156.1\|2746170_2747013_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.7e-35	33.9
WP_005178807.1\|2747155_2747821_-	O-methyltransferase	S5YRC3	Mycobacterium_phage	5.0e-30	38.7
WP_005178806.1\|2747953_2748676_-	hypothetical protein	NA	NA	NA	NA
WP_005178805.1\|2748806_2749130_-	ferredoxin family protein	NA	NA	NA	NA
WP_104470856.1\|2749335_2751969_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	3.8e-33	23.6

DBSCAN-SWA_8

3076197 : 3122820

Escherichia_phage(20.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168369713.1\|3076197_3077265_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q19ZT4	Mycobacterium_virus	3.6e-30	37.9
WP_005178047.1\|3077531_3077981_-	cyanase	NA	NA	NA	NA
WP_005178046.1\|3078273_3079083_+	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_075166620.1\|3079145_3080900_+	bifunctional protein-serine/threonine kinase/phosphatase	Q67624	IC4_retrovirus	1.2e-09	27.9
WP_075166621.1\|3081441_3082542_-	ABC transporter permease	NA	NA	NA	NA
WP_075166622.1\|3082538_3083669_-	ABC transporter permease	NA	NA	NA	NA
WP_075166623.1\|3083668_3084799_-	HlyD family secretion protein	NA	NA	NA	NA
WP_075166624.1\|3084810_3086292_-	TolC family protein	NA	NA	NA	NA
WP_045795652.1\|3087917_3088526_-	MarC family protein	NA	NA	NA	NA
WP_075166626.1\|3088538_3090575_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	5.4e-19	26.1
WP_075166637.1\|3090804_3091389_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_075166627.1\|3091409_3092882_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_075166628.1\|3092892_3094560_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	6.2e-53	30.2
WP_075166629.1\|3094718_3095492_+	hypothetical protein	NA	NA	NA	NA
WP_075166630.1\|3095515_3096907_-	sensor histidine kinase N-terminal domain-containing protein	NA	NA	NA	NA
WP_075166631.1\|3096909_3097581_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-30	36.4
WP_104495277.1\|3097690_3099673_+	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_104487251.1\|3099669_3100512_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_168370193.1\|3100524_3101265_+	thiol:disulfide interchange protein DsbG	NA	NA	NA	NA
WP_104495281.1\|3101537_3102461_+	Abi family protein	A3QSC6	Clostridium_virus	3.7e-31	30.3
WP_016658146.1\|3102464_3102668_+	hypothetical protein	NA	NA	NA	NA
WP_168370194.1\|3102821_3103829_-	OmpA family protein	NA	NA	NA	NA
WP_075168284.1\|3104490_3105477_+	DUF1852 domain-containing protein	NA	NA	NA	NA
WP_075168283.1\|3105505_3106534_+	methionine synthase	NA	NA	NA	NA
WP_075168282.1\|3106643_3107135_+	flavin reductase	NA	NA	NA	NA
WP_075168281.1\|3107176_3107977_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_168370195.1\|3109104_3109521_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_104498184.1\|3109605_3110541_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_075168278.1\|3110791_3111328_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_104483793.1\|3111788_3113008_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	2.0e-77	51.9
WP_075168276.1\|3113223_3115104_-	hypothetical protein	NA	NA	NA	NA
WP_075168275.1\|3115112_3116117_-	hypothetical protein	NA	NA	NA	NA
WP_075168274.1\|3116200_3118939_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.5e-218	56.2
WP_168370196.1\|3119143_3119950_-	hypothetical protein	NA	NA	NA	NA
WP_104488398.1\|3120077_3121010_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	4.6e-58	40.9
WP_130128030.1\|3121800_3122820_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.0e-80	46.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041291

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection