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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051267 Salmonella enterica subsp. enterica serovar Typhimurium strain OLF-FSR1_WB_Hawk_ST-33 chromosome, complete genome 4 crisprs DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT 0 13 10 0
NZ_CP051268 Salmonella enterica subsp. enterica serovar Typhimurium strain OLF-FSR1_WB_Hawk_ST-33 plasmid pST33-93798, complete sequence 0 crisprs cas14j 0 0 1 0

Results visualization

1. NZ_CP051267
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051267_1 1558665-1558754 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051267_2 3781610-3781719 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051267_3 3972646-3973755 TypeI-E I-E
17 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051267_4 3989884-3990156 TypeI-E I-E
4 spacers
cas3,cas8e,cse2gr11,cas7,cas5

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 NC_011802 Salmonella enterica bacteriophage SE1, complete genome 15034-15075 0 1.0
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 CP051272 Salmonella phage SW-70, complete genome 35832-35873 0 1.0
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 CP051278 Salmonella phage ST-87, complete genome 25843-25884 0 1.0
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 CP051288 Salmonella phage ST-29, complete genome 38685-38726 0 1.0
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 CP051285 Salmonella phage ST-32, complete genome 31779-31820 0 1.0
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 NC_014900 Salmonella phage ST160, complete genome 15102-15143 0 1.0
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 MW013502 Salmonella virus L cI-40 13-am43, complete genome 31672-31713 2 0.952
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 NC_004348 Enterobacteria phage ST64T, complete genome 14874-14915 2 0.952
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 MW013503 Salmonella virus L cII-101, complete genome 31673-31714 2 0.952
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 AY052766 Salmonella typhimurium bacteriophage ST64T, complete genome 14874-14915 2 0.952
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 MF188997 Salmonella phage vB_SalP_PM43, complete genome 14769-14810 2 0.952
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 NC_019715 Enterobacterial phage mEp234, complete genome 30408-30449 5 0.881
NZ_CP051267_1 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder 1558689-1558730 42 NC_019768 Enterobacteria phage HK106, complete genome 32704-32745 5 0.881
NZ_CP051267_3 3.17|3973224|28|NZ_CP051267|PILER-CR 3973224-3973251 28 NC_009927 Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence 337987-338014 5 0.821
NZ_CP051267_3 3.9|3973163|32|NZ_CP051267|CRISPRCasFinder,CRT 3973163-3973194 32 NZ_CP013929 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence 188177-188208 7 0.781
NZ_CP051267_3 3.9|3973163|32|NZ_CP051267|CRISPRCasFinder,CRT 3973163-3973194 32 CP013931 Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence 192938-192969 7 0.781
NZ_CP051267_3 3.9|3973163|32|NZ_CP051267|CRISPRCasFinder,CRT 3973163-3973194 32 NC_019394 Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence 188204-188235 7 0.781
NZ_CP051267_3 3.29|3973450|32|NZ_CP051267|CRT,CRISPRCasFinder 3973450-3973481 32 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29079 7 0.781
NZ_CP051267_3 3.29|3973450|32|NZ_CP051267|CRT,CRISPRCasFinder 3973450-3973481 32 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142294-142325 7 0.781
NZ_CP051267_3 3.2|3972736|32|NZ_CP051267|CRISPRCasFinder,CRT 3972736-3972767 32 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10088 8 0.75
NZ_CP051267_3 3.8|3973102|32|NZ_CP051267|CRISPRCasFinder,CRT 3973102-3973133 32 NZ_CP016489 Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence 8862-8893 8 0.75
NZ_CP051267_3 3.8|3973102|32|NZ_CP051267|CRISPRCasFinder,CRT 3973102-3973133 32 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 151600-151631 8 0.75
NZ_CP051267_3 3.11|3972738|32|NZ_CP051267|PILER-CR 3972738-3972769 32 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10088 8 0.75
NZ_CP051267_3 3.21|3973464|33|NZ_CP051267|PILER-CR 3973464-3973496 33 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142293-142325 8 0.758
NZ_CP051267_3 3.21|3973464|33|NZ_CP051267|PILER-CR 3973464-3973496 33 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29080 8 0.758
NZ_CP051267_3 3.28|3973389|32|NZ_CP051267|CRT,CRISPRCasFinder 3973389-3973420 32 NZ_CP016179 Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence 203354-203385 8 0.75
NZ_CP051267_3 3.1|3972675|32|NZ_CP051267|CRISPRCasFinder,CRT 3972675-3972706 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
NZ_CP051267_3 3.1|3972675|32|NZ_CP051267|CRISPRCasFinder,CRT 3972675-3972706 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
NZ_CP051267_3 3.10|3972677|32|NZ_CP051267|PILER-CR 3972677-3972708 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
NZ_CP051267_3 3.10|3972677|32|NZ_CP051267|PILER-CR 3972677-3972708 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
NZ_CP051267_4 4.1|3989913|32|NZ_CP051267|CRISPRCasFinder,CRT 3989913-3989944 32 NZ_CP054615 Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence 146919-146950 10 0.688
NZ_CP051267_4 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR 3990096-3990127 32 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1885546-1885577 11 0.656
NZ_CP051267_4 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR 3990096-3990127 32 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 56201-56232 11 0.656
NZ_CP051267_4 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR 3990096-3990127 32 NZ_CP040822 Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence 83399-83430 11 0.656
NZ_CP051267_4 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR 3990096-3990127 32 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1487158-1487189 11 0.656
NZ_CP051267_4 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR 3990096-3990127 32 NZ_CP029232 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence 597699-597730 11 0.656

1. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

2. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

3. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

4. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

5. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

6. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

7. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

8. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

9. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

10. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

11. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

12. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to NC_019715 (Enterobacterial phage mEp234, complete genome) position: , mismatch: 5, identity: 0.881

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggatctcagcggaga	Protospacer
***********************.******** *****.* .

13. spacer 1.1|1558689|42|NZ_CP051267|CRISPRCasFinder matches to NC_019768 (Enterobacteria phage HK106, complete genome) position: , mismatch: 5, identity: 0.881

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggatctcagcggaga	Protospacer
***********************.******** *****.* .

14. spacer 3.17|3973224|28|NZ_CP051267|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  * 

15. spacer 3.9|3973163|32|NZ_CP051267|CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

16. spacer 3.9|3973163|32|NZ_CP051267|CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

17. spacer 3.9|3973163|32|NZ_CP051267|CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

18. spacer 3.29|3973450|32|NZ_CP051267|CRT,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  * 

19. spacer 3.29|3973450|32|NZ_CP051267|CRT,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  * 

20. spacer 3.2|3972736|32|NZ_CP051267|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

21. spacer 3.8|3973102|32|NZ_CP051267|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

22. spacer 3.8|3973102|32|NZ_CP051267|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

23. spacer 3.11|3972738|32|NZ_CP051267|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

24. spacer 3.21|3973464|33|NZ_CP051267|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

25. spacer 3.21|3973464|33|NZ_CP051267|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

26. spacer 3.28|3973389|32|NZ_CP051267|CRT,CRISPRCasFinder matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.     

27. spacer 3.1|3972675|32|NZ_CP051267|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

28. spacer 3.1|3972675|32|NZ_CP051267|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

29. spacer 3.10|3972677|32|NZ_CP051267|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

30. spacer 3.10|3972677|32|NZ_CP051267|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

31. spacer 4.1|3989913|32|NZ_CP051267|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********   

32. spacer 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

33. spacer 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

34. spacer 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccagaaggttggtctggaaggcgatcgagtcg	Protospacer
.  .**** ************ *****.   .

35. spacer 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

36. spacer 4.4|3990096|32|NZ_CP051267|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 464180 : 514197 51 Burkholderia_phage(37.5%) tail,plate,tRNA NA
DBSCAN-SWA_2 1528670 : 1566416 63 Salmonella_phage(81.97%) coat,protease,lysis,tRNA,holin,integrase attL 1538680:1538694|attR 1549729:1549743
DBSCAN-SWA_3 1904985 : 1913717 7 Dickeya_phage(14.29%) protease,transposase NA
DBSCAN-SWA_4 1963809 : 2062617 98 Salmonella_phage(44.44%) protease,tail,portal,lysis,terminase,tRNA,holin NA
DBSCAN-SWA_5 2802866 : 2859291 61 Saccharomonospora_phage(11.11%) protease,tail,tRNA,transposase,integrase attL 2847346:2847368|attR 2857060:2857082
DBSCAN-SWA_6 2934739 : 3014093 96 Salmonella_phage(85.25%) tail,protease,portal,plate,lysis,head,terminase,transposase,holin,integrase attL 2941277:2941292|attR 3015716:3015731
DBSCAN-SWA_7 3100081 : 3110587 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_8 3178895 : 3188066 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_9 3207473 : 3273864 59 Salmonella_phage(30.0%) tail,holin,lysis NA
DBSCAN-SWA_10 3612314 : 3718268 108 Salmonella_phage(40.32%) tail,protease,lysis,capsid,head,terminase,tRNA,transposase,holin,integrase attL 3636859:3636875|attR 3726172:3726188
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP051268
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 20482 : 29778 11 Escherichia_phage(28.57%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage