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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051461 Polaromonas vacuolata strain KCTC 22033 chromosome, complete genome 4 crisprs cas3,PD-DExK,Cas9_archaeal,DinG,DEDDh,csa3,RT 0 2 6 0

Results visualization

1. NZ_CP051461
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051461_1 820171-820235 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051461_2 1158957-1159039 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051461_3 1421777-1421892 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051461_4 3197065-3197178 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051461_3 3.1|1421821|28|NZ_CP051461|CRISPRCasFinder 1421821-1421848 28 NZ_CP005085 Sphingobium sp. TKS plasmid pTK1, complete sequence 249700-249727 4 0.857
NZ_CP051461_4 4.1|3197089|24|NZ_CP051461|CRISPRCasFinder 3197089-3197112 24 NZ_CP016082 Streptomyces sp. SAT1 plasmid unnamed2, complete sequence 215782-215805 4 0.833
NZ_CP051461_4 4.1|3197089|24|NZ_CP051461|CRISPRCasFinder 3197089-3197112 24 NZ_AP022578 Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence 218606-218629 4 0.833
NZ_CP051461_3 3.1|1421821|28|NZ_CP051461|CRISPRCasFinder 1421821-1421848 28 NZ_CP009293 Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence 147464-147491 6 0.786

1. spacer 3.1|1421821|28|NZ_CP051461|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 4, identity: 0.857

gcagcgcagcgtgggggcttgggtctcc	CRISPR spacer
gcagcgcagcgtggggccttgcgttacc	Protospacer
**************** **** **. **

2. spacer 4.1|3197089|24|NZ_CP051461|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.833

gccggaacgatcgccaccaccgta	CRISPR spacer
gccggaacgctcgccaccaccacg	Protospacer
********* ***********...

3. spacer 4.1|3197089|24|NZ_CP051461|CRISPRCasFinder matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 4, identity: 0.833

gccggaacgatcgccaccaccgta	CRISPR spacer
atcggaacgatcgccaacaccgtg	Protospacer
..************** ******.

4. spacer 3.1|1421821|28|NZ_CP051461|CRISPRCasFinder matches to NZ_CP009293 (Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence) position: , mismatch: 6, identity: 0.786

gcagcgcagcgtgggggcttgggtctcc	CRISPR spacer
tcagcgcagcgtgggggctgggggagac	Protospacer
 ****************** ***    *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1108504 : 1116616 7 Cafeteria_roenbergensis_virus(33.33%) NA NA
DBSCAN-SWA_2 1527838 : 1550024 24 uncultured_Caudovirales_phage(15.38%) terminase,capsid,portal NA
DBSCAN-SWA_3 1679676 : 1687583 9 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_4 2386042 : 2450757 53 Flavobacterium_phage(20.0%) transposase,tRNA,protease NA
DBSCAN-SWA_5 3520642 : 3594846 50 Tupanvirus(18.18%) transposase,tRNA,protease NA
DBSCAN-SWA_6 3628833 : 3636636 7 Acinetobacter_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage