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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051467 Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome 11 crisprs cas3,WYL,DEDDh,DinG,Cas9_archaeal,csa3 0 3 8 0

Results visualization

1. NZ_CP051467
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_1 413837-413921 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_2 463913-464016 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_3 1082951-1083051 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_4 1086478-1086582 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_5 1118528-1118661 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_6 1389679-1389782 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_7 2098946-2099045 Orphan NA
1 spacers
csa3,DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_8 2532040-2532296 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_9 2884450-2884556 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_10 4400024-4400123 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051467_11 4616329-4616431 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051467_5 5.2|1118609|25|NZ_CP051467|CRISPRCasFinder 1118609-1118633 25 NC_003064 Agrobacterium fabrum str. C58 plasmid At, complete sequence 289792-289816 4 0.84
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 NZ_LR134451 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence 243203-243229 5 0.815
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 CP003958 Rhodococcus opacus PD630 plasmid 9, complete sequence 14018-14044 5 0.815
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 CP003952 Rhodococcus opacus PD630 plasmid 3, complete sequence 54837-54863 5 0.815
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 NZ_CP022369 Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence 401402-401428 5 0.815
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 NZ_CP007796 Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence 399729-399755 6 0.778
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 NZ_CP033321 Azospirillum brasilense strain Cd plasmid p3, complete sequence 423841-423867 6 0.778
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 NZ_CP033315 Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence 480604-480630 6 0.778
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 NZ_CP032325 Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence 311346-311372 6 0.778
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 NZ_CP032342 Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence 395212-395238 6 0.778
NZ_CP051467_1 1.1|413866|27|NZ_CP051467|CRISPRCasFinder 413866-413892 27 NZ_CP032349 Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence 430850-430876 6 0.778
NZ_CP051467_6 6.1|1389716|30|NZ_CP051467|CRISPRCasFinder 1389716-1389745 30 NZ_CP013381 Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence 73975-74004 8 0.733
NZ_CP051467_6 6.1|1389716|30|NZ_CP051467|CRISPRCasFinder 1389716-1389745 30 NZ_CP009547 Burkholderia sp. 2002721687 plasmid pBTU, complete sequence 43886-43915 8 0.733
NZ_CP051467_6 6.1|1389716|30|NZ_CP051467|CRISPRCasFinder 1389716-1389745 30 NZ_CP040675 Exiguobacterium mexicanum strain A-EM plasmid punnamed1, complete sequence 52758-52787 8 0.733

1. spacer 5.2|1118609|25|NZ_CP051467|CRISPRCasFinder matches to NC_003064 (Agrobacterium fabrum str. C58 plasmid At, complete sequence) position: , mismatch: 4, identity: 0.84

gcacggtgctttccactgccatgac	CRISPR spacer
gcacggtggtttccgctgccatgca	Protospacer
******** *****.********  

2. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 5, identity: 0.815

atgggcgtggttcatgacccgatcgga	CRISPR spacer
ctgggccttgttcatgacccgatcgag	Protospacer
 ***** * ****************..

3. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to CP003958 (Rhodococcus opacus PD630 plasmid 9, complete sequence) position: , mismatch: 5, identity: 0.815

atgggcgtggttcatgacccgatcgga	CRISPR spacer
gtgggcgtggtgcatgagccgatcgac	Protospacer
.********** ***** *******. 

4. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to CP003952 (Rhodococcus opacus PD630 plasmid 3, complete sequence) position: , mismatch: 5, identity: 0.815

atgggcgtggttcatgacccgatcgga	CRISPR spacer
gtgggcgtggtgcatgagccgatcgac	Protospacer
.********** ***** *******. 

5. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 5, identity: 0.815

atgggcgtggttcatgacccgatcgga	CRISPR spacer
cagagcgtggctcatgacccgatccga	Protospacer
  *.******.************* **

6. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 6, identity: 0.778

atgggcgtggttcatgacccgatcgga	CRISPR spacer
cacagcgtggctcatgacccgatccga	Protospacer
   .******.************* **

7. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.778

atgggcgtggttcatgacccgatcgga	CRISPR spacer
cacagcgtggctcatgacccgatccga	Protospacer
   .******.************* **

8. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.778

atgggcgtggttcatgacccgatcgga	CRISPR spacer
cacagcgtggctcatgacccgatccga	Protospacer
   .******.************* **

9. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.778

atgggcgtggttcatgacccgatcgga	CRISPR spacer
cacagcgtggctcatgacccgatccga	Protospacer
   .******.************* **

10. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.778

atgggcgtggttcatgacccgatcgga	CRISPR spacer
cacagcgtggctcatgacccgatccga	Protospacer
   .******.************* **

11. spacer 1.1|413866|27|NZ_CP051467|CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.778

atgggcgtggttcatgacccgatcgga	CRISPR spacer
cacagcgtggctcatgacccgatccga	Protospacer
   .******.************* **

12. spacer 6.1|1389716|30|NZ_CP051467|CRISPRCasFinder matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 8, identity: 0.733

tcgaatcggccagtagatccacgccacgcg	CRISPR spacer
ggcgttcggccagttgatcctcgccacgcc	Protospacer
   . ********* ***** ******** 

13. spacer 6.1|1389716|30|NZ_CP051467|CRISPRCasFinder matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 8, identity: 0.733

tcgaatcggccagtagatccacgccacgcg	CRISPR spacer
ggcgttcggccagttgatcctcgccacgcc	Protospacer
   . ********* ***** ******** 

14. spacer 6.1|1389716|30|NZ_CP051467|CRISPRCasFinder matches to NZ_CP040675 (Exiguobacterium mexicanum strain A-EM plasmid punnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgaatcggccagtagatccacgccacgcg	CRISPR spacer
gttaatcggccagtcgatccaccccaagta	Protospacer
 . *********** ******* *** *..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1858590 : 1867228 16 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_2 1878974 : 1906499 34 Siphoviridae_environmental_samples(31.82%) tail,integrase,terminase,head attL 1887774:1887790|attR 1912386:1912402
DBSCAN-SWA_3 2728324 : 2738775 10 Stenotrophomonas_phage(71.43%) transposase NA
DBSCAN-SWA_4 2818930 : 2829516 12 Stenotrophomonas_phage(66.67%) transposase NA
DBSCAN-SWA_5 3074115 : 3132629 66 Pseudomonas_phage(34.78%) terminase,tRNA,tail,portal,protease,head,capsid NA
DBSCAN-SWA_6 3475850 : 3528890 65 Siphoviridae_environmental_samples(17.39%) terminase,tRNA,tail,portal,head,capsid NA
DBSCAN-SWA_7 4103861 : 4209784 95 Enterobacter_phage(19.23%) tail,transposase,protease,plate NA
DBSCAN-SWA_8 4554303 : 4564877 10 Enterobacteria_phage(37.5%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage