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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051487 Pseudomonas umsongensis strain CY-1 chromosome, complete genome 10 crisprs DEDDh,DinG,csa3,cas3,PD-DExK 2 4 5 0

Results visualization

1. NZ_CP051487
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_1 2008996-2009106 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_2 2266869-2266999 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_3 2704180-2704277 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_4 2707168-2707262 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_5 2783300-2783457 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_6 3053738-3053850 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_7 3551241-3551311 Orphan NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_8 4116963-4117069 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_9 4431863-4431940 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051487_10 4613827-4613927 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP051487_5 5.1|2783352|54|NZ_CP051487|CRISPRCasFinder 2783352-2783405 54 NZ_CP051487.1 2374743-2374796 1 0.981
NZ_CP051487_6 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder 3053779-3053809 31 NZ_CP051487.1 2893676-2893706 1 0.968
NZ_CP051487_5 5.1|2783352|54|NZ_CP051487|CRISPRCasFinder 2783352-2783405 54 NZ_CP051487.1 3553188-3553241 2 0.963

1. spacer 5.1|2783352|54|NZ_CP051487|CRISPRCasFinder matches to position: 2374743-2374796, mismatch: 1, identity: 0.981

ggcaagcctggctcctacagtaaaagcgaaaacctaagtggccgttaccgcagc	CRISPR spacer
ggcaagcctggctcctacagtaaaagcgaaaccctaagtggccgttaccgcagc	Protospacer
******************************* **********************

2. spacer 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder matches to position: 2893676-2893706, mismatch: 1, identity: 0.968

cccggttcgccggcaagcctggctcctacag	CRISPR spacer
cctggttcgccggcaagcctggctcctacag	Protospacer
**.****************************

3. spacer 5.1|2783352|54|NZ_CP051487|CRISPRCasFinder matches to position: 3553188-3553241, mismatch: 2, identity: 0.963

ggcaagcctggctcctacagtaaaagcgaaaacctaagtggccgttaccgcagc	CRISPR spacer
ggcaagcctggctcctacagtaaaagcgaaaccctaagcggccgttaccgcagc	Protospacer
******************************* ******.***************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051487_2 2.1|2266892|31|NZ_CP051487|CRISPRCasFinder 2266892-2266922 31 NZ_CP033220 Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence 57005-57035 7 0.774
NZ_CP051487_2 2.1|2266892|31|NZ_CP051487|CRISPRCasFinder 2266892-2266922 31 NZ_CP033220 Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence 138684-138714 7 0.774
NZ_CP051487_2 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder 2266946-2266976 31 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 766552-766582 7 0.774
NZ_CP051487_2 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder 2266946-2266976 31 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 436330-436360 7 0.774
NZ_CP051487_2 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder 2266946-2266976 31 NZ_CP015322 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence 255825-255855 7 0.774
NZ_CP051487_6 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder 3053779-3053809 31 NC_017805 Deinococcus gobiensis I-0 plasmid P1, complete sequence 213569-213599 7 0.774
NZ_CP051487_2 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder 2266946-2266976 31 NZ_CP042496 Leclercia adecarboxylata strain E61 plasmid pE61_003, complete sequence 44055-44085 8 0.742
NZ_CP051487_2 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder 2266946-2266976 31 NZ_MH909330 Leclercia adecarboxylata strain 150707804 plasmid p707804-1FII, complete sequence 79919-79949 8 0.742
NZ_CP051487_6 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder 3053779-3053809 31 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1454950-1454980 8 0.742
NZ_CP051487_6 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder 3053779-3053809 31 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 240505-240535 8 0.742
NZ_CP051487_8 8.1|4117000|33|NZ_CP051487|CRISPRCasFinder 4117000-4117032 33 NZ_CP054028 Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence 199724-199756 8 0.758
NZ_CP051487_2 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder 2266946-2266976 31 NZ_CP033036 Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence 333653-333683 9 0.71
NZ_CP051487_2 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder 2266946-2266976 31 NZ_CP033024 Agrobacterium fabrum strain 1D132 plasmid pAt1D132a, complete sequence 264154-264184 9 0.71
NZ_CP051487_6 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder 3053779-3053809 31 NC_020062 Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence 2063860-2063890 9 0.71

1. spacer 2.1|2266892|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP033220 (Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence) position: , mismatch: 7, identity: 0.774

cgccggtatcgaccagttgttgggcggcact	CRISPR spacer
tgttggcctcgaccagctgtttggcggcact	Protospacer
.*..**. ********.**** *********

2. spacer 2.1|2266892|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP033220 (Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence) position: , mismatch: 7, identity: 0.774

cgccggtatcgaccagttgttgggcggcact	CRISPR spacer
tgttggcctcgaccagctgtttggcggcact	Protospacer
.*..**. ********.**** *********

3. spacer 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacaatgacgtcctcaatggcgaggac	CRISPR spacer
tgccgacaatgacgtcatcgatggcgaaggt	Protospacer
.* ************* **.*******.*..

4. spacer 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacaatgacgtcctcaatggcgaggac	CRISPR spacer
tgccgacaatgacgtcatcgatggcgaaggt	Protospacer
.* ************* **.*******.*..

5. spacer 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacaatgacgtcctcaatggcgaggac	CRISPR spacer
ccccttcgatgacttcctcaatggcgatgac	Protospacer
*  *  *.***** ************* ***

6. spacer 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 7, identity: 0.774

cccggttcgccggcaagcctggctcctacag	CRISPR spacer
acgaattcgcgggcaagcccggctcctacgg	Protospacer
 * ..***** ********.*********.*

7. spacer 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP042496 (Leclercia adecarboxylata strain E61 plasmid pE61_003, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgacaatgacgtcctcaatggcgaggac	CRISPR spacer
cggtattcatgacgtcttcaatggcgaagac	Protospacer
**... . ********.**********.***

8. spacer 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder matches to NZ_MH909330 (Leclercia adecarboxylata strain 150707804 plasmid p707804-1FII, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgacaatgacgtcctcaatggcgaggac	CRISPR spacer
cggtattcatgacgtcttcaatggcgaagac	Protospacer
**... . ********.**********.***

9. spacer 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.742

cccggttcgccggcaagcctggctcctacag	CRISPR spacer
ccccgttcggcggcaagcctggcgacaagcc	Protospacer
*** ***** *************  * *   

10. spacer 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 8, identity: 0.742

cccggttcgccggcaagcctggctcctacag	CRISPR spacer
ccccgttcggcggcaagcctggcgacaagcc	Protospacer
*** ***** *************  * *   

11. spacer 8.1|4117000|33|NZ_CP051487|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.758

actggttggctgcaaggccgccttcgctggcag	CRISPR spacer
gctcatgggcggcaaggccgccttggctggcga	Protospacer
.** .* *** ************* ******..

12. spacer 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP033036 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence) position: , mismatch: 9, identity: 0.71

cgacgacaatgacgtcctcaatggcgaggac	CRISPR spacer
cgacgccaatgacgtcctcgatgagttaacc	Protospacer
***** *************.***.   .. *

13. spacer 2.2|2266946|31|NZ_CP051487|CRISPRCasFinder matches to NZ_CP033024 (Agrobacterium fabrum strain 1D132 plasmid pAt1D132a, complete sequence) position: , mismatch: 9, identity: 0.71

cgacgacaatgacgtcctcaatggcgaggac	CRISPR spacer
cgacgccaatgacgtcctcgatgagttaacc	Protospacer
***** *************.***.   .. *

14. spacer 6.1|3053779|31|NZ_CP051487|CRISPRCasFinder matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 9, identity: 0.71

cccggttcgccggcaagcctggctcctacag	CRISPR spacer
cccggttcggcggcaagccttgccttgaata	Protospacer
********* ********** **... *  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1367561 : 1377072 9 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_2 2486844 : 2587244 133 Pseudomonas_phage(32.5%) plate,terminase,tRNA,integrase,transposase,holin,tail,portal,head attL 2494254:2494303|attR 2589507:2589556
DBSCAN-SWA_3 2991139 : 3032300 37 Bacillus_phage(50.0%) holin,coat NA
DBSCAN-SWA_4 4462729 : 4469005 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_5 6348138 : 6390952 39 Tupanvirus(33.33%) transposase,holin,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage