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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051518 Lactococcus lactis subsp. cremoris strain F chromosome, complete genome 1 crisprs DEDDh,cas3,WYL,csa3 0 0 149 0
NZ_CP051519 Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP051521 Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence 0 crisprs NA 0 0 2 0
NZ_CP051520 Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP051518
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051518_1 321058-321153 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 13017 11 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_2 20953 : 23818 4 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_3 39011 : 39944 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_4 45948 : 70251 18 Bacillus_phage(11.11%) transposase NA
DBSCAN-SWA_5 74372 : 77396 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_6 82269 : 83064 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_7 87941 : 92574 3 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_8 97123 : 104532 7 Mycobacterium_phage(33.33%) tRNA NA
DBSCAN-SWA_9 109137 : 112741 5 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_10 119591 : 120938 1 Acanthamoeba_polyphaga_mimivirus(100.0%) tRNA NA
DBSCAN-SWA_11 127401 : 135431 8 Tupanvirus(25.0%) tRNA NA
DBSCAN-SWA_12 142056 : 151164 6 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_13 154289 : 172066 17 Lactococcus_phage(50.0%) integrase,transposase attL 161366:161388|attR 172086:172108
DBSCAN-SWA_14 184065 : 185265 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_15 190110 : 191835 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_16 199885 : 201826 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_17 218017 : 222933 3 Bacillus_phage(50.0%) tRNA,protease NA
DBSCAN-SWA_18 227399 : 229397 2 Apis_mellifera_filamentous_virus(50.0%) NA NA
DBSCAN-SWA_19 237560 : 242688 5 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_20 251102 : 252359 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_21 256048 : 257029 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_22 263767 : 314849 51 Staphylococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_23 317882 : 320987 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_24 330297 : 336150 6 Salinivibrio_phage(33.33%) tRNA NA
DBSCAN-SWA_25 345310 : 352963 6 Catovirus(60.0%) NA NA
DBSCAN-SWA_26 376688 : 378506 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_27 382994 : 386936 4 Bodo_saltans_virus(33.33%) transposase NA
DBSCAN-SWA_28 392275 : 397174 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_29 403183 : 407489 4 Flavobacterium_phage(50.0%) NA NA
DBSCAN-SWA_30 412583 : 415217 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_31 437763 : 438264 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_32 449183 : 457504 7 Streptococcus_phage(66.67%) tRNA NA
DBSCAN-SWA_33 470278 : 474654 6 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_34 478046 : 491904 14 Streptococcus_virus(20.0%) NA NA
DBSCAN-SWA_35 495716 : 503936 7 Cyanophage(33.33%) NA NA
DBSCAN-SWA_36 517870 : 518506 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_37 525146 : 532328 5 Acidianus_filamentous_virus(50.0%) NA NA
DBSCAN-SWA_38 543858 : 544530 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_39 550361 : 554210 4 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_40 557637 : 559358 2 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_41 566923 : 568066 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_42 571463 : 579115 6 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_43 587382 : 590230 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_44 595114 : 595873 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_45 602047 : 606629 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_46 611816 : 613400 2 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_47 620828 : 622466 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_48 625831 : 627112 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_49 630342 : 631605 1 Lactococcus_phage(100.0%) integrase attL 625495:625508|attR 631801:631814
DBSCAN-SWA_50 637814 : 651136 13 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_51 655768 : 657991 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_52 667877 : 668915 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_53 677363 : 681327 2 Bacillus_phage(50.0%) transposase NA
DBSCAN-SWA_54 700732 : 701843 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_55 715367 : 717119 2 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_56 732182 : 732380 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_57 739484 : 741437 2 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_58 756890 : 761476 7 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_59 764558 : 765749 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_60 778560 : 783557 4 Indivirus(33.33%) NA NA
DBSCAN-SWA_61 787079 : 788561 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_62 798522 : 799182 1 Tokyovirus(100.0%) NA NA
DBSCAN-SWA_63 805840 : 806952 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_64 812889 : 813606 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_65 817274 : 822037 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_66 825418 : 827317 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_67 830711 : 837873 7 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_68 843882 : 848734 5 Bacillus_virus(33.33%) transposase NA
DBSCAN-SWA_69 861093 : 862779 1 Brochothrix_phage(100.0%) NA NA
DBSCAN-SWA_70 869187 : 869928 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_71 874112 : 877889 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_72 881053 : 884791 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_73 897957 : 899064 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_74 903507 : 905230 2 Amsacta_moorei_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_75 910418 : 915375 6 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_76 928030 : 939585 8 Planktothrix_phage(28.57%) NA NA
DBSCAN-SWA_77 945871 : 946531 1 Nitrososphaera_phage(100.0%) NA NA
DBSCAN-SWA_78 950990 : 955714 3 Lactobacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_79 970627 : 971887 1 Serratia_phage(100.0%) tRNA NA
DBSCAN-SWA_80 976007 : 990258 16 uncultured_virus(27.27%) tRNA NA
DBSCAN-SWA_81 995520 : 996141 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_82 1001765 : 1003106 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_83 1008098 : 1015055 4 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_84 1029057 : 1043860 13 Staphylococcus_phage(33.33%) integrase,tRNA attL 1032554:1032613|attR 1052211:1052280
DBSCAN-SWA_85 1048756 : 1052030 4 Lactococcus_phage(33.33%) transposase NA
DBSCAN-SWA_86 1057975 : 1059583 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_87 1068797 : 1076638 6 Enterococcus_phage(40.0%) NA NA
DBSCAN-SWA_88 1081232 : 1148257 55 Streptococcus_phage(27.78%) integrase,transposase,protease attL 1138040:1138056|attR 1149050:1149066
DBSCAN-SWA_89 1152565 : 1158166 5 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_90 1161843 : 1162287 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_91 1167609 : 1230491 49 Streptococcus_phage(12.5%) transposase,tRNA,protease NA
DBSCAN-SWA_92 1251292 : 1254165 4 Brevibacillus_phage(50.0%) bacteriocin,protease NA
DBSCAN-SWA_93 1257578 : 1261051 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_94 1266963 : 1273780 8 Lactococcus_phage(60.0%) NA NA
DBSCAN-SWA_95 1286529 : 1287885 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_96 1304177 : 1308725 4 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_97 1312719 : 1313601 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_98 1330238 : 1333091 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_99 1338388 : 1339120 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_100 1344961 : 1347217 2 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_101 1350506 : 1370237 17 Streptococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_102 1373993 : 1376162 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_103 1380985 : 1386890 4 uncultured_phage(33.33%) tRNA NA
DBSCAN-SWA_104 1392694 : 1393841 1 Shigella_phage(100.0%) transposase NA
DBSCAN-SWA_105 1400057 : 1402220 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_106 1410618 : 1414170 4 Feldmannia_irregularis_virus(33.33%) NA NA
DBSCAN-SWA_107 1418508 : 1418844 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_108 1422995 : 1478946 51 Yellowstone_lake_mimivirus(12.5%) integrase,transposase attL 1460735:1460751|attR 1485732:1485748
DBSCAN-SWA_109 1485178 : 1486804 3 Catovirus(50.0%) NA NA
DBSCAN-SWA_110 1490897 : 1492448 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_111 1496983 : 1497748 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_112 1501195 : 1503151 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_113 1506838 : 1536235 26 Bacillus_phage(16.67%) transposase NA
DBSCAN-SWA_114 1542474 : 1544298 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_115 1553283 : 1554431 1 Shigella_phage(100.0%) transposase NA
DBSCAN-SWA_116 1558548 : 1560411 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_117 1564526 : 1568310 4 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_118 1575056 : 1612827 32 Bacillus_phage(15.0%) transposase NA
DBSCAN-SWA_119 1620216 : 1620885 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_120 1624410 : 1625754 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_121 1630494 : 1631448 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_122 1635683 : 1636319 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_123 1643433 : 1649557 6 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_124 1655415 : 1665386 6 Bacillus_phage(50.0%) transposase NA
DBSCAN-SWA_125 1671898 : 1677500 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_126 1686030 : 1686933 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_127 1699997 : 1704104 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_128 1710282 : 1779067 61 Lactococcus_phage(21.43%) transposase,tRNA,protease NA
DBSCAN-SWA_129 1785061 : 1785844 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_130 1794793 : 1864819 57 Bacillus_phage(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_131 1878150 : 1976720 82 Streptococcus_phage(25.0%) lysis,transposase NA
DBSCAN-SWA_132 1981077 : 1985129 6 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_133 1992937 : 1993669 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_134 2005918 : 2007460 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_135 2014266 : 2014752 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_136 2020165 : 2022441 2 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_137 2025999 : 2041468 12 Lactococcus_phage(33.33%) transposase NA
DBSCAN-SWA_138 2046122 : 2048107 2 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_139 2051218 : 2052583 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_140 2057356 : 2062053 5 Hokovirus(50.0%) NA NA
DBSCAN-SWA_141 2066596 : 2067805 1 unidentified_phage(100.0%) tRNA NA
DBSCAN-SWA_142 2081184 : 2143197 54 Bacillus_phage(20.0%) bacteriocin,transposase,tRNA NA
DBSCAN-SWA_143 2146581 : 2154118 7 Gordonia_phage(20.0%) NA NA
DBSCAN-SWA_144 2162653 : 2171433 8 Mycobacterium_phage(33.33%) transposase NA
DBSCAN-SWA_145 2182472 : 2187020 4 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_146 2202389 : 2203501 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_147 2211875 : 2231171 19 Streptococcus_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_148 2238434 : 2239856 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_149 2245020 : 2245935 1 Catovirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP051521
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4883 : 57573 50 Lactococcus_phage(38.89%) protease,bacteriocin,transposase NA
DBSCAN-SWA_2 64154 : 72569 8 Lactococcus_phage(42.86%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage