CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP051666	Marinobacterium sp. LSUCC0821 chromosome, complete genome	2 crisprs	DEDDh,cas3,csa3,DinG,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP051666_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051666_1

713211-713324

Orphan

Consensus_repeat	Method
CCCCTTCGGGGCCAGCCTAAAGGCTGTTCAAAATTGTTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051666_1

>merge|NZ_CP051666|1|713211-713324|CRISPRCasFinder
CCCCTTCGGGGCCAGCCTAAAGGCTGTTCAAAATTGTTCCATACGTTTAGTACTCGGGCTATCCATACCCTCGCCCCTGCGGGGCCAGCCTAAAGGCTGTTCAAAATTGTTCCA

>NZ_CP051666|1|1|713211-713324|CRISPRCasFinder
CCCCTTCGGGGCCAGCCTAAAGGCTGTTCAAAATTGTTCCA	TACGTTTAGTACTCGGGCTATCCATACCCTCG
CCCCTGCGGGGCCAGCCTAAAGGCTGTTCAAAATTGTTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051666.1\|WP_169450692.1\|704321_705083_-\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|378467
NZ_CP051666.1\|WP_169450704.1\|718371_719367_-\|response-regulator	unknown	unknown	gnl\|CDD\|225971
NZ_CP051666.1\|WP_169450703.1\|717690_718350_+\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_CP051666.1\|WP_169450690.1\|702691_703303_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226360
NZ_CP051666.1\|WP_169450696.1\|708707_710312_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NZ_CP051666.1\|WP_169450691.1\|703315_704299_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176189
NZ_CP051666.1\|WP_169450697.1\|710323_711145_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379006
NZ_CP051666.1\|WP_169450695.1\|707748_708636_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP051666.1\|WP_169450698.1\|711141_712998_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP051666.1\|WP_169450694.1\|706424_707555_-\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223153
NZ_CP051666.1\|WP_169450708.1\|727819_729481_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NZ_CP051666.1\|WP_169450706.1\|723174_726042_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP051666.1\|WP_169450705.1\|719372_723008_-\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP051666.1\|WP_169450693.1\|705138_706281_+\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|379373
NZ_CP051666.1\|WP_169450702.1\|716299_717694_+\|anthranilate-synthase-component-I-family-protein	unknown	unknown	gnl\|CDD\|273819
NZ_CP051666.1\|WP_169450689.1\|701157_702699_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181853
NZ_CP051666.1\|WP_169450707.1\|726178_727567_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP051666.1\|WP_169450699.1\|714083_715061_+\|calcium/sodium-antiporter	unknown	unknown	gnl\|CDD\|182684
NZ_CP051666.1\|WP_169450701.1\|716051_716300_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|366598
NZ_CP051666.1\|WP_169450700.1\|715206_715920_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084

Protein	Function_ID	Function_description	E-value
NZ_CP051666.1\|WP_169450692.1\|704321_705083_-\|DUF4198-domain-containing-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	1.85958e-17
NZ_CP051666.1\|WP_169450704.1\|718371_719367_-\|response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	6.2044e-104
NZ_CP051666.1\|WP_169450703.1\|717690_718350_+\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	1.50262e-98
NZ_CP051666.1\|WP_169450690.1\|702691_703303_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226360	COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism].	1.96509e-57
NZ_CP051666.1\|WP_169450696.1\|708707_710312_+\|HAMP-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.0089e-29
NZ_CP051666.1\|WP_169450691.1\|703315_704299_-\|quinone-oxidoreductase	gnl\|CDD\|176189	cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP051666.1\|WP_169450697.1\|710323_711145_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|379006	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake.	6.92256e-75
NZ_CP051666.1\|WP_169450695.1\|707748_708636_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.67622e-15
NZ_CP051666.1\|WP_169450698.1\|711141_712998_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	7.39506e-43
NZ_CP051666.1\|WP_169450694.1\|706424_707555_-\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	7.92345e-75
NZ_CP051666.1\|WP_169450708.1\|727819_729481_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NZ_CP051666.1\|WP_169450706.1\|723174_726042_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP051666.1\|WP_169450705.1\|719372_723008_-\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	4.12614e-115
NZ_CP051666.1\|WP_169450693.1\|705138_706281_+\|HupE/UreJ-family-protein	gnl\|CDD\|379373	pfam13795, HupE_UreJ_2, HupE / UreJ protein. These proteins contain many conserved histidines that may be involved in nickel binding.	5.78715e-55
NZ_CP051666.1\|WP_169450702.1\|716299_717694_+\|anthranilate-synthase-component-I-family-protein	gnl\|CDD\|273819	TIGR01820, Anthranilate_synthase_component_1, anthranilate synthase component I, archaeal clade. This model represents an archaeal clade of anthranilate synthase component I enzymes. This enzyme is responsible for the first step of tryptophan biosynthesis from chorismate. The Sulfolobus enzyme has been reported to be part of a gene cluster for Trp biosynthesis [Amino acid biosynthesis, Aromatic amino acid family].	2.87676e-131
NZ_CP051666.1\|WP_169450689.1\|701157_702699_+\|ABC-transporter-permease-subunit	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	1.91305e-118
NZ_CP051666.1\|WP_169450707.1\|726178_727567_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.68177e-48
NZ_CP051666.1\|WP_169450699.1\|714083_715061_+\|calcium/sodium-antiporter	gnl\|CDD\|182684	PRK10734, PRK10734, putative calcium/sodium:proton antiporter; Provisional.	1.6143e-76
NZ_CP051666.1\|WP_169450701.1\|716051_716300_+\|transcriptional-regulator	gnl\|CDD\|366598	pfam01371, Trp_repressor, Trp repressor protein. This protein binds to tryptophan and represses transcription of the Trp operon.	5.26512e-17
NZ_CP051666.1\|WP_169450700.1\|715206_715920_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	7.30543e-131

>NZ_CP051666.1|WP_169450698.1|711141_712998_-|response-regulator
MKNLSIRAKTILGVGFIEILMLGLLLVLMNGFIKSTNYEALELRAKTTTQLFAQMVTDSVMSFDLATLESSADELLKSEAIAYVHIVDAKNRTLVSAGNHEPSPLDLTVETMQGSIFDAAEVIAFNGSPFATVKIGFEVGPVLAVIKTAEQWGIGVAVIELLLVALFSLLLGHYLTRKLDLLKESATRIADGDLTKTIDVVGNDEVDRVARAFEWMRLSLLNAQNMLLSAKHSLESEVEHRTKELSHAKSLAEETLARESEVFAIIGHEIRTPLAVIKMMIDQQGSKADIKQISEQVNHTLSLVEDMSLVARIGGRRESEMVTVDLEQQFKLIVTPFVSMAAEAGIELTYKSDCPVNSNTRLPLKGLRQSLTNLIKNAILHSDGEHIEVSLSLDPCGDNKADLCIEVVDDGVGIPVAQRESMFAPFKRGLSKNDGTGIGLSVSRQLIEHCGGSLTSESRLDGVSGGRFVIRCRIELISTVSEAQSTEMGNPLKGLRVLVAEDNPTLQLLTKSVLQKREATVDVAADGIEAINYFNTTSYDLVLTDFMMPNMNGCELAQALRSNGFSGPIIGVTAATVGQEREDLIEYGVDAALSKPLNLEELNKALTEFSNKAATGDI
>NZ_CP051666.1|WP_169450697.1|710323_711145_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MKLTIKGTLCALGLTATMSVQAEHLTFGIVPQQSATKLAALWTPILSYLSTKSGVELSFATAPDIPTFEKRVLDGEYDIAYMNPYHFTFFNEHRGYRSMVRRDDKGIQGIVVVRKDSPIQSLNELQGERIAFPSPAAFAATLLPQGELAKKGINIEPVYVSSHDSVYLSVAGEFFKAGGGIGRTLANTKPEIKEQLRVLWKTEVYTPHAVAAHPRVSEEARTKITEAFLTMNRDPKGQALLQSLSMGSLTAANDSDWDDVRSLNLHLLDSLLK
>NZ_CP051666.1|WP_169450696.1|708707_710312_+|HAMP-domain-containing-protein
MIRNSIRTKTVIGIALIEAVLLIALILLMLGFIKETNFKALETRAESTAHLFATTVKDSFLSYDLATLETFVAEVMRNDDLVYARVITKDGQILADSKTQIPGELDRSVESVKDGIYDTRAVISEGGKTYGWVEVGFSINPILTVIANAQQWSITIASLEMILVALFSLALGRYLTNKLLTLREAANQVSRGELTTQINVKGRDEVDEVATAFNQMTDHLLSSRAQEKKLQLELLKLNESLEQKVKERTHQLQQKNTLLENANREIQLAQQKLLSAEKHATVGVLAAGIAHEVNNPLSVVRSNIGTINTYIKLLAEALEAIKSKADQGENVSSDELAALIAKSDLSYIQDDYPELIKDTATGVTRVRDIIEQLRAFETSAEAASSSQCDLQRALQNATNRIPTELSQGVEYSLSDDAPLKLPCREEFVTEVIAAVLMNSYQAVRNVTKPFISVSLEKSGKDLAIQICDNGEGIEAAILNKVFDPFFTTRDIGAGMGLGLYKARALITAMQGSIELENRKEKGVCVTIKLPLTIN
>NZ_CP051666.1|WP_169450695.1|707748_708636_+|DMT-family-transporter
MPTAQLVNLFILSILWGGSFLFIGVAVKELAPLLLVFLRVAIAAVAMLIVLKLVKVKLPTTIIEWRNYAVMGLINNVIPFTLIFYAQTHISVSLASIINAMTPVCTFIVLALFGEELLKPNKILGSLMGLAGVAILSGLLQLSLDVSLLGVLMSFGATVSYGFSGLWAKRHLAGRNSIQSATCQMISSTGLMLILMPLLGVSLPSALPSNEVIWAVLTLALASTALAYILFFELISKAGTSNAMLVTLLVPVSGSVLGHLVMGDQLHLIQLVGALMIGLGLLIIDGRIFKRKIAN
>NZ_CP051666.1|WP_169450694.1|706424_707555_-|alanine--glyoxylate-aminotransferase-family-protein
MSGLLANVDPDGLLEFSVVYTDRSLNHMSNAFQHVMRDLSAQLKSVYNADSVAIVPGSGTFGMEAVARQFAKGKKALVIRNGWFSYRWTQIFEMAELPREELVLKAQFDSTEADAQLAPFPIAQAVETILNEKPDVVFAPHVETSAGMILPDDYIKAIADAAHQVGALFVLDCIASGTIWVDMKALGVDVICSAPQKGWSGSPCAGLVMMSAKAREVAEASSSNSFACDLKKWTQIMEAYENGGHAYHATMPTDGLRQLRDVMAEAEQYGFAKLKEAQARLGSEARALLASRGIKSLAADGFGAPGVVVSHTLDAEIQNGSKFAQAGFQIAAGVPLMCDEPAGFRTFRIGLFGIDKLMNVDRTIDYLKDALDKAGL
>NZ_CP051666.1|WP_169450693.1|705138_706281_+|HupE/UreJ-family-protein
MNTKIYLQTIYRLFLLIVFTTLSVNVTAHEVTPTIIEIEAVSSHQITLKIDTNLEALMTEIGADHTNTDDAPQAEEYNALRSLTDQQLAEKATPFINAFIEKITLLGEGDQRVSLSPSQVDLSIKPQSDLEIARESLISYTLDTDVELATPLTFSWPSQFGDSVVRVIHKGEAAGALWVKAGTSSDPFELNAVTLKQSLFDYVVIGFEHILPLGLDHILFVLGIYLLSQRLKDLLWQVTAFTAAHTLTLGLAILGYVSVSPSIVEPLIALSICYVAIENLFHKQISTSRVVLVFAFGLLHGLGFAGVLSEIGLNQDAFIPSLIAFNVGVELGQLAVITLAYILAGYWFGEKPYWNKLIRVPVSLLIALTGAFWVVERVFY
>NZ_CP051666.1|WP_169450692.1|704321_705083_-|DUF4198-domain-containing-protein
MSFSLNASAHEFWLESDPFITAPDNSIDVHIKIGQLFNGRSYPYLEHEAVSYHTLDERGLVPIKAMTGDKPALRYSLDASGYRMVGYESTAFHIKFDDTVKFVTYLRAEGLESALSWYKTTGTSMDGATETYYRHAKTLAGTAGAAEPNWLSEPMGQRLEIIPQRGITQCASQPSFKVLWQGEPVEGLLVRRFRKDSKESDELRTNSEGLVTFDAIEGAFLMNTVRIAKGSESPRGEGRDWYSDWASFTYECE
>NZ_CP051666.1|WP_169450691.1|703315_704299_-|quinone-oxidoreductase
MGEITKAIRIQQNGDPEEMKLVDVELPALGANDVLVRHEAVGLNYIDVYFRTGLYPQEMPGKLGMEGAGVVEAIGSDVTYVKVGDRVAYAGQPIGAYAVKRVMPQDTLVVLPDSISFEQGAAMMLQGLTVQYLLNDSYTVKAGDTVLLHAAAGGVGLIAVQWLKALGARVIGTVGSAEKAELAKSYGCDETIIYTSEDFVARTRELTNGNGVNVVYDSIGKDTFMGSLDCLAPRGTMVTFGNATGAVPAFEVGMLAAKGSLKVTRPTLMTYVHDRPMLEEMAKDLFARVTSGQVKIEINQRYPLADVSKAHTDLESRKTTGSTILIP
>NZ_CP051666.1|WP_169450690.1|702691_703303_+|ATP-binding-cassette-domain-containing-protein
MTKDIGLSVTSLAVVYPDWRYTYNLEIEAGTRVALLGESGIGKTTLLLALAGFAPIESGQITWHKKDITQSPANQRPIAMLFQADNLFEHLSVRSNLLLGQSPTLDQQRVIDGAARLGIDKQLDKMPAQLSGGQRQRVAILRTMLRDEPLVILDEPFTGLDETTKERTLAWIDEQLTQDNKTLLMVTHQQTDATGLNARIASI
>NZ_CP051666.1|WP_169450689.1|701157_702699_+|ABC-transporter-permease-subunit
MPSLAAGVAYFVTFAVTFTAFWGLTSYQGSALSIALLQDNYLQQILKFTLYQALISTLLSLLLAVPVARALHRASPWGKSLFLKLSLLAFVMPSLVLVSGIVNLLGPQSNFSKALDGWNLFGLSGILIAHVYLNFPFAVRVLYGAFQAIPESREQLADQLKLSTLQRIQHIELPAIRAQLWTLAGLIGILCFNSFAIVLTLGGGPKATTLELAIYQALKYDFNLSEALTLAWLQFAIAGSLFLLLSYSAKVNWLGAERGTQSQRTERGSIRYLQLAIYVAAWVYLLFPILALVSKISVNLLINYPYSSMFRALSETLIIATSAALLALLLSLLLLNPIRKAAIRQQKLTEAIWSWLASHSLVAPAIVISTGTYILLISQGLLEAFSYFYLIVLNAMVLLPFLLNQLKPHLLQFDLQYYALIENLKLPLFERLKVTAIHIHKPLIATASFALLLALGDVAIFAIFGSYQHPTLPWLIYTFAGTYRLAEAALTSLILLALCFVLLRLMEHYQRHD
>NZ_CP051666.1|WP_169450699.1|714083_715061_+|calcium/sodium-antiporter
MLLPILAVIVGLVLLVWSADRFVDGAAATAKHMGMPTLLIGMVIIGFGTSAPELVVSGLAASQGNPGLAIGNGFGSNITNIALILGITALLSPVSVKSQILKTELPLLAFATLLVGALIYDLNISRLDAIIMLVVFAFIMGWSIFNGMRSKNDALEGDFANEFADDDYLPLNRALFWLVAGLVMLIASSRILVWGAVDIAMALGVSDLIIGLTIVAIGTSLPELASSIIAVKKNEHDLAIGNVIGSNLFNTLAVVGIAGTIQPLALEPEALYRDWTVMGMLTLSLFILGFGVLGRRRINRFEGGLLVASYAGYSGYLLYTLSAAF
>NZ_CP051666.1|WP_169450700.1|715206_715920_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRAYQNRKDSMAKTSDMNAKLYSRYSREIYMVAKSGGTDPDGNLALRSLMDKAKKEQVPGHVIDKAIDKAKGGAGEDFTPARYEGYGPGGSMAIIECLTDNPNRTFGDVRVAFTKTKCKIGTQGSVAHMFEHAAVFMFKFDDEEAVLEALMEADVDVSDIEDEDGMLTVFAAPTDYFKTKTALNAMGITDFEIEEIQWIPNSYTQISDEDKVLFEKFMSILDELDDVQHVYHNVEM
>NZ_CP051666.1|WP_169450701.1|716051_716300_+|transcriptional-regulator
MNTSEYFDQLVDHLLSCKSNEALAQALQGLLTPSETVEISKRLQIFRMLEAGVPQREIAKQLGVGIATVTRGSRVLKSEESE
>NZ_CP051666.1|WP_169450702.1|716299_717694_+|anthranilate-synthase-component-I-family-protein
MSSRKPAKIELPRKPQYLKLAADIDFFELFKKIEKRFDNCVMLESLGEESYISRHSIIGFDPEQIIWADEGHLHIEDRAGNRETYESENPYYLLREIVPQNIISRKYAGGLTGYIGYDCMNYFEPSLDLQHSEMFDIFRFGVFKDGLILDKMTGEVFYFFYTDSRIALLEEIMATPCPPNGELKIHNLGDTMTQAEHADAVMKVKQDIIEGKIFQTEVGFKKRFRLIGDTINIYEQLREVNPSPQMYYVKFGDQKLIGASPELLFRLRQGEMETFPLAGTAKRGADPIEDQQLARKLLNDPKEIAEHNMIVDLHRNDIGRVARFGTVKVRSLMDIKRFSHVQHISSEIVGIISDKHDMFSALASNFPAGTLTGAPKIEAMKIINDLEADGRGPYGGAVGHFAFNGDCTFAIPIRTVFANGEQAYVQTCGGNVYDSNAEDEYEEIRRKFAGTKKVLDQFIVEADA
>NZ_CP051666.1|WP_169450703.1|717690_718350_+|aminodeoxychorismate/anthranilate-synthase-component-II
MKVYMIDNYDSFTYNLYQFIGEVLESEVQQGNLESFEIIVKRNDEVTLDQVAAEQPDRIIISPGPGSPDDPAYFGVCADVIKELGKTTPLLGVCLGMQGIVHCFGGKVVKAPLPMHGKISPINHNQEGVFANTPNQLEVMRYHSLIAEAETLPECLDVTAAVGDLTADQFSDRLQLKAGGAFEIMGVKHRDYPIHGIQFHPESFATEGGKELVKNFLFV
>NZ_CP051666.1|WP_169450704.1|718371_719367_-|response-regulator
MLSKSSILVVDDSPATLANIQEMLSDSPYELAFANSGESAMEFLARKVPDLVLLDIQMGEMGGFEVMKMMHSNPELCEIKVIVMTSANNLETEIEALASGASDFIHKPLHPDILKLRINNLLATVRTEYLERTHREAIEMIAIAGHYNDNETGEHIWRMADYAALIAEAEGFSPEEVELIRIAAPMHDTGKIGIPDAVLKKPAKLDADEWRIMKRHTQIGHQILSRSKAPAFALASQIALNHHERFDGTGYPTGYKGNQIPLISRIVTLADVYDALTMERPYKEAWSSDKAYEYIIEESGKLFDPKLVETFIRIRPEVERIRIAYGAKEAS
>NZ_CP051666.1|WP_169450705.1|719372_723008_-|response-regulator
MTSGFLLSTFRRFAAAAVIGAVMGISYLYLIDQQEQETIQSVNDDLVASLQKSLKHKLNFLSTDLSEILSSAALANYVNSPATESKTDLSSYFSMFASVSRRYDQIRFLSATGVEKVRINYANGISKIVSDAELQDKSDRYYFSETLGLPKFTSFVSDFDLNVEGNQVELPHKPMIRLSHKIYSANGAFAGVLVLNYLGQPLIDELEIAKAFPGQLTLLDDKGNWIFDEQGTRNWNKQLGDRSTLNLHNPEVWSQLTSDRNASFDVGDYTYLSGHISYPQEVSPSSSIAGRELHILISSPKGFNLLGALNINNLGVYGLYLILALFASLRWTDSIYKRRAAEAELERERLDYQTHLEEEIELRTHNLEISRERLELAADELNLGIWDINLDRSELSWNEWMFHIHDLEISDDITFDAWQKLIIEKDRSRFNTELNLALAGAEPLDTQIEICSPTTAHIKTLKIQASRTKLEGRQILLGVLRDITAEVLINRELEFAKDEAVQAAVAKSEFLANMSHEIRTPLNAVLGMAYLLEKPNMPEQSQNIGSKITNAGKSLLSILNDILDFSKIEAGKLELIPESFSISGLLDNLAVIMNQSAADKALELIIQPDASLNRVVEADRLRLEQVLINLIGNAIKFTDRGYVLVRVETLASTDDRVRLRFSVKDTGIGMTPESQSRVLKAFEQADVSINRRFGGTGLGLAISTRILEKFGSKLEISSIAGKGSTFSFDIDLSSGSSNHLSLEEIKDLNVLIADDHDVARDALESIVNAIGWRSEIFNGGLPAYHRALKANSPDLILLDWDMPDMDGLTVARLIKSEQLRSSSPIIVMVTALGSEEVRNSADSIYVDAVLDKPVTASALLDAVMSIHKPTTAKSDESENHLAGLKLLVVDDNEFNRQVAVEIFTGEGAEVFSVDDGHEAVEFLANNDHSIDLVLMDIQMPIMDGYEATRKIRQELKLTDLPIIALTAGAFAQDKEKALQSGMNDFIPKPLDVKRSVALIQRYTQGGLELSPKQPSANAAGQAANRILDLEGALTIWRSEEKLNTYLKKFFDEYKTFVSRFARMSDIEREVHKLKGAAGALGLKRLFATTSSLLDSLRSRGTPNAQKINEFADVLRATLSHIESRCNIKVVSDDPLDLSIEQQLEIIERAQSLLEDNNPAPILGELVTLTGIVDDVLLSKATDALEAFDFVTAKEQINTLKAAVIANNQMGE
>NZ_CP051666.1|WP_169450706.1|723174_726042_-|aminomethyl-transferring-glycine-dehydrogenase
MSQISLGLDQLLDTEQFINRHLGSNESEQATMCNTLGVADRAQLIKETVPASILINTPLAVPAPVTESAALSELHALAKKNQVNTNFIGMGYYGTKVPGVILRNVLENPAWYTAYTPYQPEISQGRLEALLNYQQMVMDLTGMDLANASLLDEATAAAEAMTLLKRSTRKKCDTFFVDAQVHPQTIDVINTRAEYFGIEVVVDDALNIDKHDCFGALIQYPGSEGEIVDLGAVVEKAKVQGALVAVATDLLALMLLKSPGSLGADVALGSSQRFGVPMGFGGPHAAFFATSEKLKRSVPGRIIGVSIDSRGNQAYRMAMQTREQHIRREKATSNICTAQALLANMAGFYATYHGPKGLNLIAQRVHRFTQIVAAHLDEAGIAVNESFFDTLSFNADLALYQRALNAGINLRKISETRFGISVDESHTLADIAALISALTDKSVSADELTLTGTAFAIPEALQRDDEVLTHPVFNSYQAEHDMLRYLKRLENRDYSLVHGMIPLGSCTMKLNATSEMAPVTWPELGNMHPFAPKDQTLGYAEMISQLESWLAEITGYDAMSMQPNSGASGEYAGLLAIRKYQESIGQGHRNVCLIPSSAHGTNPASAAMLDMKVVVVACDDLGNVDLPDLKAKLEEHSDNLSALMITYPSTHGVFEEAVREICDLTHQHGGQVYMDGANLNAQVGLSKPGEIGSDVSHLNLHKTFAIPHGGGGPGMGPIGVKSHLAPFLASHKVAPIDGLNPDNGAVAAAQYGSASILPITWMYIRMLGAKGLRESTELAILNANYIATRLEAYYPVLYRGTQGRVAHECIIDIRPLKEATGVSEEDIAKRLMDYGFHAPTMSFPVPGTLMVEPTESESIDELDRFIDAMIKIRGEIAEVEQGVIAVEATALKAAPHTLADITDLEWNRAYTKEQAVFPSRQTKEAKFWPSVNRIDNVYGDRNFVCTCPPVSDYQE
>NZ_CP051666.1|WP_169450707.1|726178_727567_-|MFS-transporter
MDVTARYYKRFDKVRLRALVIVSLAILLFPLSVSATLVAIPSIASELSASALYASWIPSIFVLSSLVFQLPGGRLSDLVGLKRAFVWSNILFAVGGVFGAISPTIELLLLSRVVQGAAGAILASTGMAIISRVYESKGRGVAIGWMTSAVYLGMTSGPLVGGLLVDLFGWRSVFLITAPFALLVFVATNRFIKGEWRSADIHSVDWLGAAIFALAISGLFFGSSHLMELNGLLVVSLSIMLLWIFVRRCKRVSNPLVRIDLLIQNTPFIRSVTAALFMYASGYGIILVLSLYLQYNRGLSPTEAGQLMMLQALVMTVCAPISGRLSDRLGRRLLATLGCIAISIGLAILTFMDTQMPLTTIAVAIFFVGLGHGIFSTPNNSSALGAIPPQRVGIGSALISLARQSGQLLGTAVVSLLMAIYFGGRAITSADAMPLESVAHYALIVSLGMALTAAWFSWRRDS
>NZ_CP051666.1|WP_169450708.1|727819_729481_-|2-isopropylmalate-synthase
MFNHTRYRPAPQINIQNRQWPNKQITEAPIWASVDLRDGNQALLEPMTVEQKQRLWRLLVKIGIKEIEVGFPSASQPDYDFVRWLIDNNEIPADVTIQVLVQARKELIDRTYEALRGVKSAVVHVYNSTSTIQRERVFKQDREGIKAIATQGAQWVMDGAKAFPEVKWTFQYSPESFTGTEIDYAVEVCDAVMDVWQPNAENRCIINLPSTVEESTPNIFADQIEYFCSHIKNRAGAIVSVHTHNDRGCAVAAAELAVMAGADRVEGTLLGNGERTGNMDLVTMAMNLYSQGVDPKMDLSNPDEIITTFTECTRLPVSPRHPWIGELVYTAFSGSHQDAIQKCLHRQGEDEHWQVAYLPIDPKDIGRDYQAVIRVNSQSGKGGMAFVLERDYGISLPRWMQTELAPIVQSASEQSASEIGSAQIFEMLKENFIAATDPVQMNSYSIERDGRERFKGVLKIKGKDQALEGEGEGVVTAFLDGWQKLTGQNVNVIDYAEHAIGSGSDADAAAYYLINVDGQRVVGMAMDGDSLRASINALISAINRSSASAQLAA

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Crispr_ID: NZ_CP051666_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051666_2

2085835-2085923

Orphan

Consensus_repeat	Method
TTTTTGTACCATTTGGTTAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051666_2

>merge|NZ_CP051666|2|2085835-2085923|CRISPRCasFinder
TTTTTGTACCATTTGGTTAAAACCAAGTGGCCTAAATTTGCCACACCCTTGCAGAGAAGATCAATAGTTTTGTACCATTTGGTTAAAAC

>NZ_CP051666|2|2|2085835-2085923|CRISPRCasFinder
TTTTTGTACCATTTGGTTAAAAC	CAAGTGGCCTAAATTTGCCACACCCTTGCAGAGAAGATCAATA
GTTTTGTACCATTTGGTTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051666.1\|WP_169452002.1\|2082792_2084076_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP051666.1\|WP_169452004.1\|2084711_2085716_-\|DctP-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270394
NZ_CP051666.1\|WP_169452011.1\|2091944_2093630_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|237225
NZ_CP051666.1\|WP_169452006.1\|2086660_2087836_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340891
NZ_CP051666.1\|WP_169452001.1\|2081908_2082772_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|223247
NZ_CP051666.1\|WP_169451999.1\|2079991_2080495_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP051666.1\|WP_169452008.1\|2088664_2089282_-\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781
NZ_CP051666.1\|WP_169452003.1\|2084075_2084633_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|377284
NZ_CP051666.1\|WP_169451998.1\|2079664_2079856_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051666.1\|WP_169452013.1\|2094459_2096148_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180419
NZ_CP051666.1\|WP_169452010.1\|2091020_2091812_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP051666.1\|WP_169452005.1\|2085977_2086625_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
NZ_CP051666.1\|WP_169452009.1\|2089294_2091016_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180419
NZ_CP051666.1\|WP_169451997.1\|2079200_2079506_-\|cytochrome-c5-family-protein	unknown	unknown	gnl\|CDD\|225784
NZ_CP051666.1\|WP_169452000.1\|2080491_2080938_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP051666.1\|WP_169452012.1\|2093629_2094460_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|223247
NZ_CP051666.1\|WP_169452007.1\|2087853_2088660_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP051666.1\|WP_169452383.1\|2081124_2081853_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP051666.1\|WP_169451996.1\|2078327_2079107_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP051666.1\|WP_169452014.1\|2096140_2096950_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|366542

Protein	Function_ID	Function_description	E-value
NZ_CP051666.1\|WP_169452002.1\|2082792_2084076_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	5.38227e-118
NZ_CP051666.1\|WP_169452004.1\|2084711_2085716_-\|DctP-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270394	cd13676, PBP2_TRAP_DctP2_like, Substrate-binding component of Tripartite ATP-independent Periplasmic transporter DctP2 and related proteins; the type 2 periplasmic-binding protein fold. This subgroup includes TRAP transporter DctP2 and its similar proteins. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.38513e-106
NZ_CP051666.1\|WP_169452011.1\|2091944_2093630_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|237225	PRK12843, PRK12843, FAD-dependent oxidoreductase.	0
NZ_CP051666.1\|WP_169452006.1\|2086660_2087836_+\|MFS-transporter	gnl\|CDD\|340891	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins. This family is composed of bacterial L-fucose permease (FucP), eukaryotic Major facilitator superfamily domain-containing protein 4 (MFSD4) proteins, and similar proteins. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. The MFSD4 subfamily consists of two vertebrate members: MFSD4A and MFSD4B. The function of MFSD4A is unknown. MFSD4B is more commonly know as Sodium-dependent glucose transporter 1 (NaGLT1), a primary fructose transporter in rat renal brush-border membranes that also facilitates sodium-independent urea uptake. The FucP/MFSD4 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.59523e-48
NZ_CP051666.1\|WP_169452001.1\|2081908_2082772_-\|shikimate-dehydrogenase	gnl\|CDD\|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	5.73662e-63
NZ_CP051666.1\|WP_169451999.1\|2079991_2080495_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.81763e-35
NZ_CP051666.1\|WP_169452008.1\|2088664_2089282_-\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	1.85213e-14
NZ_CP051666.1\|WP_169452003.1\|2084075_2084633_-\|TRAP-transporter-small-permease	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	4.14789e-15
NZ_CP051666.1\|WP_169452000.1\|2080491_2080938_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	1.65919e-71
NZ_CP051666.1\|WP_169452013.1\|2094459_2096148_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|180419	PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.	0
NZ_CP051666.1\|WP_169452010.1\|2091020_2091812_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	6.34405e-49
NZ_CP051666.1\|WP_169452005.1\|2085977_2086625_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	1.8133e-45
NZ_CP051666.1\|WP_169452009.1\|2089294_2091016_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|180419	PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.	0
NZ_CP051666.1\|WP_169451997.1\|2079200_2079506_-\|cytochrome-c5-family-protein	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	3.80412e-23
NZ_CP051666.1\|WP_169452012.1\|2093629_2094460_+\|shikimate-dehydrogenase	gnl\|CDD\|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	8.76544e-52
NZ_CP051666.1\|WP_169452007.1\|2087853_2088660_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	9.89253e-13
NZ_CP051666.1\|WP_169452383.1\|2081124_2081853_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.68142e-17
NZ_CP051666.1\|WP_169451996.1\|2078327_2079107_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	0.00441
NZ_CP051666.1\|WP_169452014.1\|2096140_2096950_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	4.69889e-19

>NZ_CP051666.1|WP_169452004.1|2084711_2085716_-|DctP-family-TRAP-transporter-solute-binding-subunit
MKKAMLKTLVATAVAAASVSTFAAPTIKLGHVDGADWQTSKKGAAGVIFKNIVEGETDIKVELFPAKALGDEGSLVQQAQEGTTQMAIISGAMAKICKEADVLNIPYTFSNATIAWDVLDGQFGQDLAAHCLEETGLRTLAYGETGFRNFTNNVREIKSPADMKGLKFRVQPIPLYVEMVNGLGGEPTPIAWSELPNALTTGVVDGQENPVGTIYNNNLHKLQKYMVLDGHVYAADFIVINDEFFQSLSSAEQDIIAKAARTAGLMGRAIQQFNTAEGVTKVVAEGMKVHSPTADEMAQFKKLAQPAVKDWLAKELGSKEWIEKLDSAVAAASK
>NZ_CP051666.1|WP_169452003.1|2084075_2084633_-|TRAP-transporter-small-permease
MLSMLRTVTRCVGTFFAAGSALSMALVFLIIFINSIRRYTMGESLPWGEELPVYLAVYGIMFGMAWAYLLDRHVSFDLVAGLLPQGMHRPISLFVDLSMVAVGTLLSYSGYLFMLKRGKVDASSIISSARALRDATGIEQLAVLGQMYPYYFAMVLGGAMLALAALLRFLNRLAKADHQVGEGAF
>NZ_CP051666.1|WP_169452002.1|2082792_2084076_-|TRAP-transporter-large-permease
MTYAVLLGGIFLGLPIAFAIIASLLYFMAVGEFPYHIRIVATQMFGGMASYPLLAIPLFILAGELMNESGITSRIIAFANVLVGRMRAGLAMVNIWASVIFAGLSGSAVADTSAIGRVFIPEMEKKGYPRDFAAAITAASSVIGPIIPPSIPVIIYALTVTGVSVPALFMAGVVPGILLAIFLSVYVYLFKGHYEKSGEQHEFAEKQSNSQALIQGIIPLLMPVFVVGSILMGVVTPTEAASFAVGYAMFVGLFVFRELKVTQLPGLFARAMRDSSVIMVVIGAVAAANWLMNYNRVPNMITDFALEYMTVKWMFLVGVIVLFLVVGLFLEGIAAMLVLVPILHPIAVSLGVDPTHLGIVIIFNLMIGLITPPMGLCLFVADSIAKVGMARLSKVILPLFLVELLVLIIITFVPDLVIGLPKALGLL
>NZ_CP051666.1|WP_169452001.1|2081908_2082772_-|shikimate-dehydrogenase
MKLKLALIGNSISQSRAPFLHKMLGEIYDFDVSYDLKDPGINSREAFEATLKSLREEGYTGCNVTFPFKSLAVEYVDEPDEAVREVGATNTLYLADDKIRATNTDYTGFIHGYHAQRGDAPAGEVLMIGAGGVGRAVAFGMFHCGATKLYIFDLNVEGAKSLAAAVNAKGYSAEVISADELPTIAKSVNGLVNCTPVGHYATPGTPLDPSLFGGQDWAFDAVYVPLETEFMKAAHEAGLELVSGFDLFFHQGIDAFTTFSGTKADGHEALGRFVKEFDISSTFIKIQ
>NZ_CP051666.1|WP_169452383.1|2081124_2081853_+|sulfite-exporter-TauE/SafE-family-protein
MVACFAAWIVGLSKGGLPIVAMLSVPIMSLFMPPMTAAILLLPIYIVSDMVGVWLYRKHYSAINLKILLPAGLFGVFIGWATASIISDELVALLVGIMGLSFVAYTWFGKRHLKEAREATTGKGLFWGTIAGFTSFISHTGGPPFQVYTLPQKLEKLVFAGTATIFFAIINLSKLPPYLALRGYSADDLNLALWLVPSALVGTFMGAHLTKILKDRWFFGLIEVGLLLVSIKLIHGVVIGAM
>NZ_CP051666.1|WP_169452000.1|2080491_2080938_-|3-dehydroquinate-dehydratase
MAKILLLHGINHAMFGKRDPKHYGTFTLQDIEQASAKWALEQGCELECYQTDIEGEMARKIHQAFLEDIDAIVLNAGAWTHYSYGLADALAIFKDKGPIVEVHMSNVHAREEFRHKSVFSHQVIGQISGFGLTSYKLGIIAAADALNA
>NZ_CP051666.1|WP_169451999.1|2079991_2080495_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MLQLINLNDLSISSERLQSSYLQTEVGFLKVIWCEEGIFTSEFVDGLPGSDEFNSASFLSFLRKHPNQLPLIVQATEFQKSVWQAISKSVTGQCFTYKSLAMDMGKPDAVRAVGSALGKNQHALFIPCHRAIRSDGGLGGFRWGLERKSHLLKLEADGLNLIEQLLA
>NZ_CP051666.1|WP_169451998.1|2079664_2079856_-|hypothetical-protein
MNIDSLVRMHHRGYDVKEISTQLEITEEQLAAASRKIENIEKAKRLNRTQHSQADFAMRLTYR
>NZ_CP051666.1|WP_169451997.1|2079200_2079506_-|cytochrome-c5-family-protein
MKKTLIGLAAAVLMVPASAMAERDGATVYNTYCLACHMVGVAGAPKMGDAAAWAPRAAKGVDALLATAKTGINAMPPMGTCMDCSDAELKGAIEHMINNSK
>NZ_CP051666.1|WP_169451996.1|2078327_2079107_-|sulfite-exporter-TauE/SafE-family-protein
MTDLLWWQYSLIALIFVWSGFVRTGLGFGGAVLSLPFLLLIVDDPVIFLPIIGMHLLIFSGSITLANHLKAKRSGNSGLSENVDWDYLKKSLKIMIIPKLIGVFGLLTLPNEIMAGLIFVIVIIYSIGYILNKPFRSNRPWIDNLFLMLGGYVSGTSLIAAPLVMAVFASHVAKAQLRDTLFVLWFILVVIKLGSFVIAGVDLQLIHHLWLLPCAFIGHKLGQRLHSYLVNTDSVLFFKIMGSVLIITSTLGLIRSIAL
>NZ_CP051666.1|WP_169452005.1|2085977_2086625_+|TetR-family-transcriptional-regulator
MTQSEISKSSSKKRNPEAVKADILRVATEEFATSGFAGARVNLIAEKTETSKRMLYYYFGDKERLYIQVLENAYRDIRLGEQELRLASLEPKEALKTLIAFTFDHQRANPAFIKLVMIENIHEGRHLLAKDAFEQVNAPAIQRLTEIYQAGVASGDFRSGLNVVELHWFISSMCFFNNSNRSTFSAAFGTEIFSDAGQERLRTEVEELICRYVSA
>NZ_CP051666.1|WP_169452006.1|2086660_2087836_+|MFS-transporter
MSRSALLLLLCFIAFISLGLPDAILGVAWPSMTGELDATLDRLGLIIVGGTSGYIISSFMTGAVLRLIGVSWLLIGSGLLTTVGLILVTVVDSWLYLPFIALISGLGGGGIDAALNTYVEKHYSGRVMQWLHASFGVGVTIGPLIMTGALVATGQWRVGYLVVIVLMLLMIATFLYFRKLWDDPDQTEEVHDEPSSTLIDSLRLPVVWFSMATFFFYTSVEIGVGMWSFTLLTESRGVSVEQAGFWVSVYWGSFTVGRLVAGLLSERLGDMKMTLIGLSMSYVGIMGYLFVWPGPGGVYSLVLIGFGLAPTFPALISTTSERVPKSHVANTVGMQIAAAGVGMLIIPGVMTWAVGLFGIEIIVSIFAALLALVLVTVGILNNSAKNNPKPV
>NZ_CP051666.1|WP_169452007.1|2087853_2088660_-|sugar-phosphate-isomerase/epimerase
MNTKFSLAYLTTKDLSPDEAVRVAAETGYDMVGFRLLPAGTEAPFPILTDPKVQQRTIAALRETGIQLADIEIVRVNDTFDLARFDQFLTVGAELGAKHVLVAGDDLDRNRLIENYGRFCRRAAEFGMTADLEPMPWTAVRHIRDAIEVTEAVNCTNAAILVDALHYDRSESSLEDLRAIKPERINYIQVCDAPQIENPTLEQLIHNARGERFLPGDGEIDIASMLRALPRDKVISIEIPRTAEEATISAKDRASQALIRTKELIASL
>NZ_CP051666.1|WP_169452008.1|2088664_2089282_-|NIPSNAP-family-protein
MKYYELITLKTVIFGAGKMADGIQAFLYAPEAKGTLYGAWFSDVGSLNEVYLLRGFNSLDEMFEERDRIRLSSDPFNGGEDLLHYSCDSYKALDFMPEIEPGEFGKVYEIRTYQPTLNGLAPTIEKWREAVPKRVEYSPLTIAMYSIDGPTRFTQIWPYESANARAEARGKSVADGVWPPAGGPAFLRPEMESTMAIPMPFSPLK
>NZ_CP051666.1|WP_169452009.1|2089294_2091016_-|FAD-dependent-oxidoreductase
MPVASIIDTSPKSHYDVIVIGSGAAALSTALSAVQQGLSVAVLEKSSHIGGTTAWSGGWMWLPLNPYAKEAGFQDSKENAKRYIQSVAGGRELDPRVDTFLDAAPEMVEHYRSTTEVDFISGDKVPDMQDLPGSVKGGRSLCAAPFDGRTLGREIRFLRKPLDLTTVWGMSIGSFELRQFYDALRKPSALLHVCKRFTAHFKDLALHRRSMYLQNGNVLAASLFKSNLNLGVDLFTDVQINDLICENGSVTGVCIKSNDADFVINSNAVVSAAGGFPHSKALLDQFAAHRAGAKHFSAAVPENIGDIIQMALKQGAAISADYAEAAAWAPCSVYTRIDGTTCNYPHLLERGKPGILAIGQDGRRFTNEANCYHQFQKGLFDSHSSEQPYSWLIADRKAYRRWGLGCAKPAPFLNIQALKSGYLIKAQSLQVLADKIAVPFEAFQETISRFNQFAKTGEDLDFRRGESTYNKGAGDFEHQPNPSLGEIKKAPFYAVKLNSGSLGTFIGLKTNHECQVINAAEEPIPGLYAVGNEAASIFRGDYPSGGITLGPAMTFGYLCGKAIAKHLNNESDQ
>NZ_CP051666.1|WP_169452010.1|2091020_2091812_-|IclR-family-transcriptional-regulator
MSSALEKAFSLIEHLAQNPHGSSVSSLSEALGQPASGIHRSLKMLEELGYVRQLDQGKHYSLTIKLSALGLSYLGGLGLNDVTQPLLDHLASQTEELIRMAILDGESLVWVGVSQGTKSGLKYDPSSEQGQTAHLASSASGIALLATMSDEDAIARVMKQGMSREGQGADAPMTVKQLLETLAVTRTRGYSINSNSFLDGMSAMARVIFDPITGKPFGTVSIAGPAVRLTAERMAGFEQLLEATALELSEASRASNYFKHLES
>NZ_CP051666.1|WP_169452011.1|2091944_2093630_+|FAD-dependent-oxidoreductase
MSNSSSNYDFIVCGSGAAGLSGAVFAALKGWRVLLLEESQYIGGTSALSGGTTWTPLSSIGREVNDSDSLEEVTAFLDGTVGEASDAKVRASFLAHAASAVETLQNHTRMEFRPCPKHPDYMWNAGHATLNGRAIEPVPYKTGPMGKLRELVRPPIEEFTVLGGMQVDRIDIRNLLDRYKSVKSFFYVGRLVATYVLDRIFYGRHSRYVMGQAMIARLLHSASELGVDIKVNASVTELVEESGRVVGVKYSDNGSTKEATTKRGVLLATGGFGANKERQKQYYEATCSGVSPASSDNKASIHPLVEALGAHYGSADKHPAFYAPCSTRQRKDGSTAVYPHFVFDRSKPGTICVNDEGKRFLNETISYHDFGRTALAMQMGGEPIWLIGDQRAANKYGLGLLRPGGDNPKPLIKEGYLKSASTIAGLAKEIGVSAENLEATLNRYNESAVRGEDPEFGRGSTPYQQHNGDPDNAPNTTIRPLSGPFFAVKLEIGVIGTAKGFAGNAFAQLNKGDGSVIEGVYAAGNDLQSIMGGVYPGPGITIGPGITFAYIATQHAAGELS
>NZ_CP051666.1|WP_169452012.1|2093629_2094460_+|shikimate-dehydrogenase
MSIELSGETRLFPIVGDPIAQVRSPKYLTEIMASRGINGIVPPVHVAPSELAGFFATAKAIQNLDGIVITLPHKIDSLAFCDRVTKRASVIGAVNVTRRMADGCFYGDNTDGEAYVSAIRNRGGEPEGKQVLQIGVGGAGSAVAYEFLAQGVATLYIFDVDAARLSQAVTKLDAVFPGRVRAAESNSPKGMDIVANVTPVGMKESDPTPVPLDELTSDMMFGDALTKPAISKTGEFARSIGCKAMAGADMFDAQAETLVNFMTDDESKFLAGFELL
>NZ_CP051666.1|WP_169452013.1|2094459_2096148_+|FAD-dependent-oxidoreductase
MGSRMDNAHYDMIVLGSGAAGLSSAVTAAKNGLRVLVIEKDKDIGGTTAWSGGWIWSPRNLFATARGIHHEPSEVREYLKNVTGPFFNEKRVDAFIENAPKMIDFFHKNTSLQFQGDPGIPDTYGHQPGAGMGGRSAIAEPFDAKMLGRDFAKLKKPLNETTFYGLMIQSGSDLKAFMSMTRSFKSMVHVGKRMTRFFFDMLRFRRSTDLRNGNALIGRLLKSAIDLGVEFKLEAQVTALVQQSDRVVGVKLGEQEILANKGVVLASGGYPHDQQRREKLFVRNAEHSTLATSLATGDGASLAESVGGHFKSDTAAPAAYCPVSLVPWQNGRIGVFPHIIDRGKPGLIAVRRNGQRFCNEGLGYHDFVADLQAQLDADEPAKAWMICDYRFLRRYGLGIVRPTPVPYSPWVKSGYLKEANTLEELARQCGIDSAAFVQTVKSFNDSAAKGEDPEFARGTTPYMRLQGDAEIQPNPCVAPILKAPFFAIEVVPGSFGTFAGIDVDENCRVLTADQKPIEGLFAVGTDAASVFGGFYPAGGIAIGPALTFGYVVGNYVAGTTNE
>NZ_CP051666.1|WP_169452014.1|2096140_2096950_+|sugar-phosphate-isomerase/epimerase
MNNYPLGLAHLSALDLPPPQFIRVAAKAGFSSVGLRFVAVNDVTPGYPLMSDAKMLRETKDALSETGLRVNDVEFLKFEPGTDPRSFDALIDTAAELGARTIITAPYDEDLTRLGDNLGQFADLTAAKGVQTVLEFFPWTVIDDLASCWKLVQNSSEHLGILVDSLHFNRSNSSIKLLKKIPAKRLPFVQLCDAPVQSSYTFEELIYAGRDERLAPGLGEIPLAEIVTALPKEIVISLEVPQIKKTKELGEDRVLQQLFADTQAYLKNR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

366392 : 374912

Tupanvirus(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169450406.1\|366392_368309_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.0e-131	38.6
WP_169452277.1\|368323_368866_+	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	5.0e-12	34.2
WP_169450407.1\|368960_369155_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_169450408.1\|369190_369547_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_169450409.1\|369649_370633_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	8.4e-34	38.1
WP_169450410.1\|370658_373037_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.5e-07	28.3
WP_169450411.1\|373055_373367_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.7e-12	37.8
WP_169450412.1\|373356_373701_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_169450413.1\|373913_374912_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.8e-15	36.1

DBSCAN-SWA_2

759546 : 770924

uncultured_Mediterranean_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169450734.1\|759546_760827_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.0e-88	48.3
WP_169450735.1\|760853_761225_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-07	38.1
WP_169450736.1\|761225_762581_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.8e-79	39.7
WP_169450737.1\|762580_763156_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_169450738.1\|763242_765708_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.3e-85	49.2
WP_169450739.1\|765890_766847_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	4.3e-67	45.8
WP_169450740.1\|766854_767547_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_169450741.1\|767552_768278_+	arginyltransferase	NA	NA	NA	NA
WP_169450742.1\|768397_768616_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_169450743.1\|768662_770924_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.3e-166	42.8

DBSCAN-SWA_3

1331124 : 1339608

Synechococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169451311.1\|1331124_1332645_-	NADP-dependent phosphogluconate dehydrogenase	V5UT40	Synechococcus_phage	1.3e-20	28.7
WP_169451312.1\|1332708_1334289_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-18	31.3
WP_169451313.1\|1334377_1335847_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.4e-96	43.3
WP_169451314.1\|1336005_1337355_+	exodeoxyribonuclease VII large subunit	A0A1B3AYB4	Gordonia_phage	7.2e-36	34.5
WP_169451315.1\|1337351_1338176_+	peptidoglycan DD-metalloendopeptidase family protein	Q9AYV6	Lactococcus_phage	1.2e-12	44.2
WP_169451316.1\|1338219_1338837_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_169451317.1\|1338837_1339608_+	alpha/beta fold hydrolase	A0A1D8ET90	Mycobacterium_phage	3.7e-13	30.4

DBSCAN-SWA_4

2304020 : 2320687

uncultured_Mediterranean_phage(20.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169452208.1\|2304020_2305649_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.3
WP_169452209.1\|2305667_2306963_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	7.2e-134	59.6
WP_169452210.1\|2307066_2307369_+	cell division protein FtsB	NA	NA	NA	NA
WP_169452211.1\|2307361_2308411_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_169452212.1\|2308429_2309188_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-57	47.2
WP_169452213.1\|2309184_2309850_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.6e-41	52.8
WP_169452397.1\|2309921_2310803_+	DUF368 domain-containing protein	NA	NA	NA	NA
WP_169452214.1\|2310804_2311557_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2K9VGT1	Pontimonas_phage	1.4e-09	38.8
WP_169452215.1\|2311614_2312610_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.8e-36	36.4
WP_169452216.1\|2312622_2312946_-	ferredoxin family protein	NA	NA	NA	NA
WP_169452217.1\|2312982_2315589_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.9e-33	25.7
WP_169452218.1\|2315759_2316236_+	CinA family protein	B5TK85	Pseudomonas_phage	9.1e-26	47.4
WP_169452219.1\|2316317_2317367_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	5.5e-116	63.8
WP_169452220.1\|2317401_2317890_+	regulatory protein RecX	NA	NA	NA	NA
WP_169452398.1\|2318092_2320687_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.4e-80	37.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP051666

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection