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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051684 Duganella sp. AF9R3 chromosome, complete genome 6 crisprs csa3,WYL,cas3,DEDDh,RT,DinG 0 2 2 0

Results visualization

1. NZ_CP051684
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051684_2 903043-903139 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051684_3 903277-903420 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051684_1 902587-902731 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051684_4 2079988-2080187 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051684_5 2376202-2376324 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051684_6 2984640-2984786 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP034351 Streptomyces sp. W1SF4 plasmid p1, complete sequence 90502-90525 2 0.917
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NC_008765 Acidovorax sp. JS42 plasmid pAOVO01, complete sequence 47565-47588 2 0.917
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 JF974315 Rhizobium phage RR1-B genomic sequence 30845-30868 2 0.917
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MN585998 Mycobacterium phage Bugsy, complete genome 24323-24346 2 0.917
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP049032 Fluviibacterium aquatile strain SC52 plasmid pSC52_4, complete sequence 55839-55862 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP009293 Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence 300483-300506 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NC_014310 Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence 1600875-1600898 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP029777 Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence 339466-339489 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1033883-1033906 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 527063-527086 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 185979-186002 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP029833 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence 407449-407472 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP022760 Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence 1511286-1511309 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP022789 Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence 1511287-1511310 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1346879-1346902 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 LN997843 Streptomyces reticuli genome assembly TUE45, plasmid : II 526365-526388 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 303092-303115 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 NZ_CP030263 Ensifer adhaerens strain Corn53 plasmid AA, complete sequence 125855-125878 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 NZ_CP049244 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence 753694-753717 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 KX683875 Mycobacterium phage Baehexic, complete genome 24293-24316 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MT310879 Mycobacterium phage MA5, complete genome 23166-23189 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MT310878 Mycobacterium phage MK4, complete genome 23472-23495 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MN062706 Mycobacterium phage Heathen, complete genome 23351-23374 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MK061408 Mycobacterium phage Centaur, complete genome 24271-24294 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 KX683423 Mycobacterium phage BabyRay, complete genome 23798-23821 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MT310881 Mycobacterium phage JF2, complete genome 23238-23261 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 NC_042036 Mycobacterium phage Rockstar, complete genome 23480-23503 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MN586063 Mycobacterium phage Isca, complete genome 23487-23510 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 NC_042328 Mycobacterium virus HelDan, complete genome 23603-23626 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MF373840 Mycobacterium phage Fred313, complete genome 23295-23318 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 KC172839 Mycobacterium phage BTCU-1, complete genome 23634-23657 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 AP018485 Mycobacterium phage B1 DNA, complete genome 23238-23261 3 0.875
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 MT310880 Mycobacterium phage JF4, complete genome 23238-23261 3 0.875
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NZ_CP015737 Shinella sp. HZN7 plasmid pShin-01, complete sequence 317392-317415 4 0.833
NZ_CP051684_3 3.2|903373|24|NZ_CP051684|CRISPRCasFinder 903373-903396 24 NZ_CP034811 Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence 12602-12625 4 0.833
NZ_CP051684_1 1.1|902611|24|NZ_CP051684|CRISPRCasFinder 902611-902634 24 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 993112-993135 5 0.792

1. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.917

tcggccgcccagttcgccgcgctg	CRISPR spacer
gcggccgcccggttcgccgcgctg	Protospacer
 *********.*************

2. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NC_008765 (Acidovorax sp. JS42 plasmid pAOVO01, complete sequence) position: , mismatch: 2, identity: 0.917

tcggccgcccagttcgccgcgctg	CRISPR spacer
tcggctgcccagctcgccgcgctg	Protospacer
*****.******.***********

3. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to JF974315 (Rhizobium phage RR1-B genomic sequence) position: , mismatch: 2, identity: 0.917

tcggccgcccagttcgccgcgctg	CRISPR spacer
tcggccgtccagttcgcggcgctg	Protospacer
*******.********* ******

4. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MN585998 (Mycobacterium phage Bugsy, complete genome) position: , mismatch: 2, identity: 0.917

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtaacccgcgacgtgcaggcgctg	Protospacer
* ************** *******

5. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP049032 (Fluviibacterium aquatile strain SC52 plasmid pSC52_4, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
gcggacgcccagatcgccgcgctg	Protospacer
 *** ******* ***********

6. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP009293 (Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
gcggccgccctgttcgccgggctg	Protospacer
 ********* ******** ****

7. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
gcggccgccccggtcgccgcgctg	Protospacer
 ********* * ***********

8. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
acggcggcccagtacgccgcgctg	Protospacer
 **** ******* **********

9. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
gcggtcgccctgttcgccgcgctg	Protospacer
 ***.***** *************

10. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
ccggccacccagtacgccgcgctg	Protospacer
.*****.****** **********

11. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
acggtcgccctgttcgccgcgctg	Protospacer
 ***.***** *************

12. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
acgcccgcccagatcgccgcgctg	Protospacer
 ** ******** ***********

13. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
gcggccgccccggtcgccgcgctg	Protospacer
 ********* * ***********

14. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
gcggccgccccggtcgccgcgctg	Protospacer
 ********* * ***********

15. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
gcggtcgccctgttcgccgcgctg	Protospacer
 ***.***** *************

16. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 3, identity: 0.875

tcggccgcccagttcgccgcgctg	CRISPR spacer
ccggccgccccgttcgccgcgcag	Protospacer
.********* *********** *

17. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gaaacccgcgacgtgccggcctgg	Protospacer
******************** . *

18. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gaaacccgcgacgtgccggcctgg	Protospacer
******************** . *

19. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
caaaacctcgacgtgccggcgctg	Protospacer
 *** ** ****************

20. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to KX683875 (Mycobacterium phage Baehexic, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtgacccgcgacgtgcaggcgctg	Protospacer
* .************* *******

21. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MT310879 (Mycobacterium phage MA5, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

22. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MT310878 (Mycobacterium phage MK4, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

23. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MN062706 (Mycobacterium phage Heathen, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

24. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MK061408 (Mycobacterium phage Centaur, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtgacccgcgacgtgcaggcgctg	Protospacer
* .************* *******

25. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to KX683423 (Mycobacterium phage BabyRay, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

26. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MT310881 (Mycobacterium phage JF2, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

27. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to NC_042036 (Mycobacterium phage Rockstar, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

28. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MN586063 (Mycobacterium phage Isca, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

29. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to NC_042328 (Mycobacterium virus HelDan, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

30. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MF373840 (Mycobacterium phage Fred313, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

31. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to KC172839 (Mycobacterium phage BTCU-1, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

32. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to AP018485 (Mycobacterium phage B1 DNA, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

33. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to MT310880 (Mycobacterium phage JF4, complete genome) position: , mismatch: 3, identity: 0.875

gaaacccgcgacgtgccggcgctg	CRISPR spacer
gtcacccgcgacgtgcaggcgctg	Protospacer
*  ************* *******

34. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 4, identity: 0.833

tcggccgcccagttcgccgcgctg	CRISPR spacer
agcgccgcccagctcgccgcgctg	Protospacer
   *********.***********

35. spacer 3.2|903373|24|NZ_CP051684|CRISPRCasFinder matches to NZ_CP034811 (Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.833

gaaacccgcgacgtgccggcgctg	CRISPR spacer
ctgacccgcgacgtgcccgcgctg	Protospacer
  .************** ******

36. spacer 1.1|902611|24|NZ_CP051684|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 5, identity: 0.792

tcggccgcccagttcgccgcgctg	CRISPR spacer
cacgccgcccagttcgccgcgcgc	Protospacer
.  *******************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3866887 : 3947196 70 Acinetobacter_phage(16.0%) plate,capsid,tail,protease,head,terminase,portal,tRNA NA
DBSCAN-SWA_2 4277488 : 4287460 9 Escherichia_phage(25.0%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage