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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051640 Avibacterium paragallinarum strain ADL-AP07 chromosome, complete genome 1 crisprs WYL,DEDDh,cas2,DinG,cas3,PD-DExK,cas14j 0 1 4 0

Results visualization

1. NZ_CP051640
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051640_1 1118887-1119013 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051640_1 1.1|1118923|55|NZ_CP051640|CRISPRCasFinder 1118923-1118977 55 NZ_CP010410 Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence 454272-454326 10 0.818
NZ_CP051640_1 1.1|1118923|55|NZ_CP051640|CRISPRCasFinder 1118923-1118977 55 NZ_CP048065 Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p9, complete sequence 33562-33616 11 0.8
NZ_CP051640_1 1.1|1118923|55|NZ_CP051640|CRISPRCasFinder 1118923-1118977 55 CP022016 Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence 202572-202626 12 0.782
NZ_CP051640_1 1.1|1118923|55|NZ_CP051640|CRISPRCasFinder 1118923-1118977 55 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 683766-683820 13 0.764

1. spacer 1.1|1118923|55|NZ_CP051640|CRISPRCasFinder matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.818

aaccatggcaaggttgtgctctaccaactgagctattcccgcaagagataagata	CRISPR spacer
aaccttggcaaggttgcgctctaccaactgagctattcccgcttgggagcagtgc	Protospacer
**** ***********.*************************  *.**  **   

2. spacer 1.1|1118923|55|NZ_CP051640|CRISPRCasFinder matches to NZ_CP048065 (Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p9, complete sequence) position: , mismatch: 11, identity: 0.8

aaccatggcaaggttgtgctctaccaactgagctattcccgcaagagataagata	CRISPR spacer
aaccttggcaaggttgtgctctaccaactgagctattcccgcgcaactggaaagg	Protospacer
**** *************************************. .*   .*.* .

3. spacer 1.1|1118923|55|NZ_CP051640|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.782

aaccatggcaaggttgtgctctaccaactgagctattcccgcaagagataagata	CRISPR spacer
gaccttggcaaggtcgtgctctaccaactgagctattcccgcagtatcaagcaac	Protospacer
.*** *********.****************************. *   *. *  

4. spacer 1.1|1118923|55|NZ_CP051640|CRISPRCasFinder matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 13, identity: 0.764

aaccatggcaaggttgtgctctaccaactgagctattcccgc-----------aagagat	CRISPR spacer
aaccttggcaaggttgtgctctaccaactgagctatttccgctttttacttctaa-----	Protospacer
**** ********************************.****           **     

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 264093 : 278510 21 Mannheimia_phage(41.67%) NA NA
DBSCAN-SWA_2 1450921 : 1457401 10 Mannheimia_phage(25.0%) integrase attL 1449910:1449925|attR 1462418:1462433
DBSCAN-SWA_3 1464270 : 1477280 21 Mannheimia_phage(33.33%) integrase attL 1459317:1459331|attR 1467497:1467511
DBSCAN-SWA_4 1678963 : 1765794 105 Haemophilus_phage(23.94%) transposase,capsid,plate,tRNA,terminase,tail,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage