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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051641 Avibacterium paragallinarum strain ADL-AP02 chromosome, complete genome 1 crisprs PD-DExK,cas3,DinG,DEDDh,cas2,WYL,cas14j 0 1 4 0

Results visualization

1. NZ_CP051641
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051641_1 624389-624515 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051641_1 1.1|624425|55|NZ_CP051641|CRISPRCasFinder 624425-624479 55 NZ_CP010410 Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence 454272-454326 10 0.818
NZ_CP051641_1 1.1|624425|55|NZ_CP051641|CRISPRCasFinder 624425-624479 55 NZ_CP048065 Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p9, complete sequence 33562-33616 11 0.8
NZ_CP051641_1 1.1|624425|55|NZ_CP051641|CRISPRCasFinder 624425-624479 55 CP022016 Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence 202572-202626 12 0.782
NZ_CP051641_1 1.1|624425|55|NZ_CP051641|CRISPRCasFinder 624425-624479 55 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 683766-683820 18 0.673

1. spacer 1.1|624425|55|NZ_CP051641|CRISPRCasFinder matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.818

tatcttatctcttgcgggaatagctcagttggtagagcacaaccttgccatggtt	CRISPR spacer
gcactgctcccaagcgggaatagctcagttggtagagcgcaaccttgccaaggtt	Protospacer
   **  **.*  *************************.*********** ****

2. spacer 1.1|624425|55|NZ_CP051641|CRISPRCasFinder matches to NZ_CP048065 (Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p9, complete sequence) position: , mismatch: 11, identity: 0.8

tatcttatctcttgcgggaatagctcagttggtagagcacaaccttgccatggtt	CRISPR spacer
cctttccagttgcgcgggaatagctcagttggtagagcacaaccttgccaaggtt	Protospacer
. *.*.   *. .************************************* ****

3. spacer 1.1|624425|55|NZ_CP051641|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.782

tatcttatctcttgcgggaatagctcagttggtagagcacaaccttgccatggtt	CRISPR spacer
gttgcttgatactgcgggaatagctcagttggtagagcacgaccttgccaaggtc	Protospacer
  * .*   * .****************************.********* ***.

4. spacer 1.1|624425|55|NZ_CP051641|CRISPRCasFinder matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 18, identity: 0.673

tatcttatctctt-----------gcgggaatagctcagttggtagagcacaaccttgcc	CRISPR spacer
-----------ttagaagtaaaaagcggaaatagctcagttggtagagcacaaccttgcc	Protospacer
           **           ****.*******************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 257926 : 279134 33 Mannheimia_phage(44.44%) integrase attL 255936:255987|attR 282279:282330
DBSCAN-SWA_2 286003 : 292483 10 Mannheimia_phage(25.0%) integrase attL 280972:280987|attR 293480:293495
DBSCAN-SWA_3 1465098 : 1488174 37 Mannheimia_phage(52.63%) NA NA
DBSCAN-SWA_4 1679061 : 1765889 105 Haemophilus_phage(23.94%) capsid,holin,terminase,tRNA,plate,tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage