CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP051672	Parabacteroides distasonis strain CBBP chromosome, complete genome	3 crisprs	PrimPol,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,RT,DEDDh,PD-DExK,csa3	2	2	12	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP051672_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051672_1

950697-952058

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCACCCACACGGGGTGCGAC	PILER-CR
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CRISPRCasFinder
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CRT

20 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP051672_1

>merge|NZ_CP051672|1|950697-952058|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCACGCACCCACACGGGGTGCGACTCGTGTTTTGGCTAAGAGGGGGAACAGCTACTTATAGTTTCAATCCACGCACCCACACGGGGTGCGACCTTATTAATAGACCTGTCAAACTCATTATTCTTGTTTCAATCCACGCACCCACACGGGGTGCGACCTTGTCTCCTTCCAGTACAGTGCCCTTGGCGTTACCGTTTCAATCCACGCACCCACACGGGGTGCGACAGAGATCGATTTTATTTTCTCGACAATTACGAGGAGTTTCAATCCACGCACCCACACGGGGTGCGACAAGGCATAAATCATTTCCGTCGACACCTTTCGAGTTTCAATCCACGCACCCACACGGGGTGCGACGACTACATCGCCACTCGCCTTTACATTGCCTTCGTTTCAATCCACGCACCCACACGGGGTGCGACCCAGATCCCGTTGCCGATCCACCATTCACTGTTACGTTTCAATCCACGCACCCACACGGGGTGCGACGATCCGCCAGATTATCTTCCTCTACGTCATACGAGTTTCAATCCACGCACCCACACGGGGTGCGACGAAACGTTACTCAGACGACATGATTACCGTAACGGGTTTCAATCCACGCACCCACACGGGGTGCGACGCTTCTCAAGTAATCATCGAACATAGTTATATTGGTTTCAATCCACGCACCCACACGGGGTGCGACTTCTTTAAAGCCTTGGCATAATCCCCGGTGGATGTTTCAATCCACGCACCCACACGGGGTGCGACGATTTTCCCAGTTCTTCCGGACAGAGTTTGTCTGTTTCAATCCACGCACCCACACGGGGTGCGACTTCTTTAAAGCCTTGGCATAATCCCCGGTGGATGTTTCAATCCACGCACCCACACGGGGTGCGACCTCTTGCTGCTTGGCCGCCAACATCAACGCCTCCGAGTTTCAATCCACGCACCCACACGGGGTGCGACGCCCATACCTTGGATGATGGCCGCTGAGAGCGTGAGAGGTTTCAATCCACGCACCCACACGGGGTGCGACCCGGGCGGCTCTTATTATTTATATGCGTATGATAGTTTCAATCCACGCACCCACACGGGGTGCGACTAACCTAATGAGCACTAAAGTAAATATATATGGTTTCAATCCACGCACCCACACGGGGTGCGACCCTTACGCAGGTCATGTCGCTAATTACACTCATGTTTCAATCCACGCACCCACACGGGGTGCGACTAGGATGTCCAGTTACAGAGTTATTCGAGCAACCAAAGTTTCAATCCACGCACCCACACGGGGTGCGACCTTCAGTTCGTCCCTTCCATATCTGGTTTGGAAGATAGTTTCAATCCACGCACCCACACGGGGTGCGAC

>NZ_CP051672|1|1|950697-952058|PILER-CR
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TCGTGTTTTGGCTAAGAGGGGGAACAGCTACTTATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTATTAATAGACCTGTCAAACTCATTATTCTT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTGTCTCCTTCCAGTACAGTGCCCTTGGCGTTACC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	AGAGATCGATTTTATTTTCTCGACAATTACGAGGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	AAGGCATAAATCATTTCCGTCGACACCTTTCGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GACTACATCGCCACTCGCCTTTACATTGCCTTC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCAGATCCCGTTGCCGATCCACCATTCACTGTTAC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GATCCGCCAGATTATCTTCCTCTACGTCATACGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GAAACGTTACTCAGACGACATGATTACCGTAACGG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GCTTCTCAAGTAATCATCGAACATAGTTATATTG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TTCTTTAAAGCCTTGGCATAATCCCCGGTGGAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GATTTTCCCAGTTCTTCCGGACAGAGTTTGTCT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TTCTTTAAAGCCTTGGCATAATCCCCGGTGGAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTCTTGCTGCTTGGCCGCCAACATCAACGCCTCCGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GCCCATACCTTGGATGATGGCCGCTGAGAGCGTGAGAG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCGGGCGGCTCTTATTATTTATATGCGTATGATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TAACCTAATGAGCACTAAAGTAAATATATATG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCTTACGCAGGTCATGTCGCTAATTACACTCAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TAGGATGTCCAGTTACAGAGTTATTCGAGCAACCAAA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTCAGTTCGTCCCTTCCATATCTGGTTTGGAAGATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC

>NZ_CP051672|1|1|950697-952058|CRISPRCasFinder
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TCGTGTTTTGGCTAAGAGGGGGAACAGCTACTTATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTATTAATAGACCTGTCAAACTCATTATTCTT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTGTCTCCTTCCAGTACAGTGCCCTTGGCGTTACC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	AGAGATCGATTTTATTTTCTCGACAATTACGAGGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	AAGGCATAAATCATTTCCGTCGACACCTTTCGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GACTACATCGCCACTCGCCTTTACATTGCCTTC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCAGATCCCGTTGCCGATCCACCATTCACTGTTAC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GATCCGCCAGATTATCTTCCTCTACGTCATACGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GAAACGTTACTCAGACGACATGATTACCGTAACGG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GCTTCTCAAGTAATCATCGAACATAGTTATATTG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TTCTTTAAAGCCTTGGCATAATCCCCGGTGGAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GATTTTCCCAGTTCTTCCGGACAGAGTTTGTCT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TTCTTTAAAGCCTTGGCATAATCCCCGGTGGAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTCTTGCTGCTTGGCCGCCAACATCAACGCCTCCGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GCCCATACCTTGGATGATGGCCGCTGAGAGCGTGAGAG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCGGGCGGCTCTTATTATTTATATGCGTATGATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TAACCTAATGAGCACTAAAGTAAATATATATG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCTTACGCAGGTCATGTCGCTAATTACACTCAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TAGGATGTCCAGTTACAGAGTTATTCGAGCAACCAAA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTCAGTTCGTCCCTTCCATATCTGGTTTGGAAGATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC

>NZ_CP051672|1|1|950697-952058|CRT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TCGTGTTTTGGCTAAGAGGGGGAACAGCTACTTATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTATTAATAGACCTGTCAAACTCATTATTCTT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTGTCTCCTTCCAGTACAGTGCCCTTGGCGTTACC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	AGAGATCGATTTTATTTTCTCGACAATTACGAGGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	AAGGCATAAATCATTTCCGTCGACACCTTTCGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GACTACATCGCCACTCGCCTTTACATTGCCTTC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCAGATCCCGTTGCCGATCCACCATTCACTGTTAC
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GATCCGCCAGATTATCTTCCTCTACGTCATACGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GAAACGTTACTCAGACGACATGATTACCGTAACGG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GCTTCTCAAGTAATCATCGAACATAGTTATATTG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TTCTTTAAAGCCTTGGCATAATCCCCGGTGGAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GATTTTCCCAGTTCTTCCGGACAGAGTTTGTCT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TTCTTTAAAGCCTTGGCATAATCCCCGGTGGAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTCTTGCTGCTTGGCCGCCAACATCAACGCCTCCGA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	GCCCATACCTTGGATGATGGCCGCTGAGAGCGTGAGAG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCGGGCGGCTCTTATTATTTATATGCGTATGATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TAACCTAATGAGCACTAAAGTAAATATATATG
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CCTTACGCAGGTCATGTCGCTAATTACACTCAT
GTTTCAATCCACGCACCCACACGGGGTGCGAC	TAGGATGTCCAGTTACAGAGTTATTCGAGCAACCAAA
GTTTCAATCCACGCACCCACACGGGGTGCGAC	CTTCAGTTCGTCCCTTCCATATCTGGTTTGGAAGATA
GTTTCAATCCACGCACCCACACGGGGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051672.1\|WP_170105113.1\|954223_955102_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP051672.1\|WP_170105111.1\|952527_953550_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP051672.1\|WP_170105119.1\|962343_963219_+\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143597
NZ_CP051672.1\|WP_005856765.1\|952227_952518_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP051672.1\|WP_170105117.1\|961163_962192_+\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NZ_CP051672.1\|WP_005856752.1\|943290_943623_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|376482
NZ_CP051672.1\|WP_008772101.1\|945897_946890_+\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381377
NZ_CP051672.1\|WP_005856748.1\|941967_942393_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227090
NZ_CP051672.1\|WP_005856744.1\|939729_940539_+\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|368908
NZ_CP051672.1\|WP_057317112.1\|949994_950471_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NZ_CP051672.1\|WP_057317110.1\|953546_954212_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP051672.1\|WP_005862150.1\|943699_944161_+\|DUF4293-domain-containing-protein	unknown	unknown	gnl\|CDD\|379484
NZ_CP051672.1\|WP_005856746.1\|940645_941947_+\|phenylacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|341239
NZ_CP051672.1\|WP_154396346.1\|955128_956838_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP051672.1\|WP_011966343.1\|956834_957515_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP051672.1\|WP_011966341.1\|959824_961174_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP051672.1\|WP_170105115.1\|957528_959754_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP051672.1\|WP_170105107.1\|944342_945878_+\|sulfatase	unknown	unknown	gnl\|CDD\|293763
NZ_CP051672.1\|WP_170105109.1\|946963_949843_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NZ_CP051672.1\|WP_057318776.1\|942459_943266_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513

Protein	Function_ID	Function_description	E-value
NZ_CP051672.1\|WP_170105113.1\|954223_955102_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.03127e-133
NZ_CP051672.1\|WP_170105111.1\|952527_953550_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	4.89408e-166
NZ_CP051672.1\|WP_170105119.1\|962343_963219_+\|carbon-nitrogen-hydrolase	gnl\|CDD\|143597	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.	4.28015e-174
NZ_CP051672.1\|WP_005856765.1\|952227_952518_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.39924e-28
NZ_CP051672.1\|WP_170105117.1\|961163_962192_+\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	5.51344e-170
NZ_CP051672.1\|WP_005856752.1\|943290_943623_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|376482	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly.	0.000107095
NZ_CP051672.1\|WP_008772101.1\|945897_946890_+\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NZ_CP051672.1\|WP_005856748.1\|941967_942393_+\|hypothetical-protein	gnl\|CDD\|227090	COG4747, COG4747, ACT domain-containing protein [General function prediction only].	1.95331e-39
NZ_CP051672.1\|WP_005856744.1\|939729_940539_+\|DUF1080-domain-containing-protein	gnl\|CDD\|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	7.27192e-54
NZ_CP051672.1\|WP_057317112.1\|949994_950471_-\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	2.6253e-70
NZ_CP051672.1\|WP_057317110.1\|953546_954212_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.27843e-25
NZ_CP051672.1\|WP_005862150.1\|943699_944161_+\|DUF4293-domain-containing-protein	gnl\|CDD\|379484	pfam14126, DUF4293, Domain of unknown function (DUF4293). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 136 and 154 amino acids in length.	2.7277e-45
NZ_CP051672.1\|WP_005856746.1\|940645_941947_+\|phenylacetate--CoA-ligase	gnl\|CDD\|341239	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence.	0
NZ_CP051672.1\|WP_154396346.1\|955128_956838_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.78445e-180
NZ_CP051672.1\|WP_011966343.1\|956834_957515_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.34681e-82
NZ_CP051672.1\|WP_011966341.1\|959824_961174_+\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	7.9793e-138
NZ_CP051672.1\|WP_170105115.1\|957528_959754_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.34426e-52
NZ_CP051672.1\|WP_170105107.1\|944342_945878_+\|sulfatase	gnl\|CDD\|293763	cd16144, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	2.45691e-179
NZ_CP051672.1\|WP_170105109.1\|946963_949843_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	2.14969e-38
NZ_CP051672.1\|WP_057318776.1\|942459_943266_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	8.67781e-24

>NZ_CP051672.1|WP_057317112.1|949994_950471_-|GAF-domain-containing-protein
MAEELRIKNGDKQEMYETLLPQIASLVGNETDLIANMANIAAALKQTFGFFWVGFYRVIDNQLVLAPFQGPIACTRIKYGKGVCGTAWKETRTIIVPDVDAFPGHIACSSASRSEIVVPVIWEDKVIAVLDIDSDQPDSFDETDQIFLEKIVELLPHQ
>NZ_CP051672.1|WP_170105109.1|946963_949843_+|PD-(D/E)XK-nuclease-family-protein
MKPFLYQVASLFYEKWGAEVSRLAFVFPNRRTGLFFQKYLSEVADIPLFSPTILTINDLFIQLSGKQSADRISMLFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIENDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEGMIFREVVESMERGESPDLPYEQIVFVGLNALSVSEERFLAQLQKREIADFYWDYVSDKVTDPDNKASYFVSRNLKSFPSSMKLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMSSEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRYIDRNPLFYFRDVLPVLNHRYILSTSPEIISSLVKEITENNKIYISHTELGKTPLLEILFTPVTGVEAFSDYLIKVLEELNKVMSALSDEEEEDAPLRTNDLEQELIFHYFTTVNRMKEVMRDACVEMKIDTFFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGLPTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYHYEVPMRDKLVVYNVSSSKTPPLAVPKREDVMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSVVEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIARAFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTPFVYIESERKINGLISLSDHSEIRLKGFIDRVDEVRDAIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMYCWMYAHFTENKGKTIQPGIYYVRSLFSDPFDPSVYHRIERGKSEKVEDFSGYAQAFEEGLRGCLDEIFNPEIPFTQTPTGKACSYCPFKGICGK
>NZ_CP051672.1|WP_008772101.1|945897_946890_+|L-glyceraldehyde-3-phosphate-reductase
MEFYKAEENRYADMIYRRCGRSGILLPAVSLGLWHNFGSVDVFSNFIQIAHAAFDHGVTHFDLANNYGPAYGSAEENFGRILKKGLGAYRDEMIISTKAGYDMWPGPYGNWGSRKYLMASLDQSLKRMGLEYVDIFYSHRPDPETPIEETMGALADIVRQGKALYVGISNYDADQTRKALAVLKEHKVPCLIHQARYSMFDRWTEPDLLPVLKEEGVGMIAFSPLAQGLLTDKYLRGIPENSRAAKSTGHLQTSQVTPEAVEKARKLNEVAARRGQTLAEMALAWLLKDERVTSVLIGASSVAQLMDNLKALDNISFSGEELQEIENILI
>NZ_CP051672.1|WP_170105107.1|944342_945878_+|sulfatase
MKKTQLIPIALLSVSAVANAQNTSCPPNIILFLVDDMGWEDTSLPFWTQKTHYNEVYETPNMERLAKEGMMFTQAYASSISSPTRCSLITGTNAARHRVTNWTLFKDKTTDRESDVLTLPDWNYNGVAQVGGTNNTFVGTSFVQILKNNGYHTIHCGKAHFGAIDTPGEDPHHWGFEVNIAGHAAGGLASYLGENNYGHTKDGKPYAPNAIPGLEKYWGSDTFATEALTQEAIKALDKAKKYNQPFYLYMSHYAIHIPIDKDKRFYQKYIDKGLTAKEAAYAALIEGMDKSLGDLMDWLEKNGEADNTIVIFMSDNGGLSSEPGWRDGEIHTQNYPLNSGKGSAYEGGVREPMIVRWPGVVKPGSKCDKYLIIEDFYPTILEMAGIRGYKTVQPIDGVSFMPLLKGTGDPSVGRSLFWNCPNIWGNDGPGIGPTCSVRNGDWKLIYYYETGKKELFNITEDIGEHNDVARQHPDIVKRLSGELGTYLRKVDGQRPSFKATGKPVPWPDEIY
>NZ_CP051672.1|WP_005862150.1|943699_944161_+|DUF4293-domain-containing-protein
MLQRIQTVYLLIIVALTVATLFLPLAVLQQGDALFSFDASGLSTMIGEPELLYPAWGLFALTAIIAIIALVTIFLYKKRILQIRLCVFNALLILGFYGFFAFLIYSLKGDMEGASVSVKIALSFPLVNLILDYLAIRNIGADEALVRSLDRLR
>NZ_CP051672.1|WP_005856752.1|943290_943623_+|DNA-directed-RNA-polymerase-subunit-omega
MDYRKSNAPTNTVTRDMMKLSEETGNVYETVAIISKRANQISVEMKQDLEKKLQEFASYNDNLEEVFENREQIEISRYYEKLPKSTLIAAQEYEDGKVYYKNPAKEKNNF
>NZ_CP051672.1|WP_057318776.1|942459_943266_+|outer-membrane-protein-assembly-factor-BamD
MKKVVFLLMMTVLLSSCGEYNKILKSTDYELKYSYAKKYFNAKQYSKSATLLDELVTIFKGTAYAEESLYLLAQSYYGQKDYQTASQYFETYYTTYPKGEFTELSRFYSGYGLYLDSPDPRLDQSQTYKAIEQLQLYLEYYPQSERAEEAQNIMFELQEKLAYKELMATRLYFNLGTYMGNNFQSCVITAQNALKNYPYSKYREEFMFLIIRAKYELALVSVEEKLQGRYRDVVDEYYNYMNEYPEGNYVKQVTKFYDYASKRITDAY
>NZ_CP051672.1|WP_005856748.1|941967_942393_+|hypothetical-protein
MLIKQLSIFLENKKGRFTEVAKILGEAGVNMSAFTVAENSDFGILRLIVSDTEKAISVLREKLYAVSVADVVCLHCPNQPGALAKAMDIITSAGIFIEYMYAFSQGDAANVIIRPDDVNKCAEVLKANKLELIAASDLYKL
>NZ_CP051672.1|WP_005856746.1|940645_941947_+|phenylacetate--CoA-ligase
MIWNETIECMDREEMRKLQSLRLKRVVEHAYHNSPFYRKKMQEMGIAPDDIQTIDDITKLPFTVKQDLRDNYPFGLMAVPMSEIVRLHASSGTTGKPIVVGYTRKDLGIWAEVVARCLTAYGLTKNDSVQVSYGYGMFTGGLGAHAGVENIGGTVIPMSSGNTQKQIQLMHDFGAKGLACTPSYALYLAETIHQSGIPLEEFQLRVGAFGAEPWTENMRKELETKLNIKAYDIYGLTEICGPGVGGECECQNGTHLWEDHFFPEIVDPNTLQPVEPGQVGELVFTTLTKEGMPMLRYRTRDLTSLTYEKCACGRTAVRMGRILGRSDDMLIIRGVNVFPSQVESVILELPEFEAHYLIVVDRMNNTDTFQIQVEVRQEYYSDEMNKMIALKKKIAARMQSVIGLQPDIKIVEPRSIERSMGKAKHVIDKRKLV
>NZ_CP051672.1|WP_005856744.1|939729_940539_+|DUF1080-domain-containing-protein
MKTLVICTAMSAMILCACGGKNTQSTEETAKVVPMAVITPAINQLTDQEKAEGWALLFDGKTTKGWRGAHKDAFPDHGWMVKDGELIVQKSDGSESTNGGDIVTEGEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHPDAKLYTTFPGSRTLGSLYDLKKSENIHFNGVGEWNTAVVKVFPNNHVEHWLNGVKVLEYERGSKEFRDLVKGSKYADPSYNAGGAFGEAPKGHILLQDHGDEVAFRNIKVKELK
>NZ_CP051672.1|WP_005856765.1|952227_952518_-|CRISPR-associated-endonuclease-Cas2
MHILVTYDVDTTSKEGARRLRHVAKACIDYGQRVQNSVFECEVTEAQYCLLIERIKRIIDMSLDSVRFYILNKNENKRVKVIGVETAYKVNNALII
>NZ_CP051672.1|WP_170105111.1|952527_953550_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTTPEAYLSKDGLNVVVSVKQEEVFRIPAINIEGIVTFGYMGASPGVMKLCSDNSISLTFLSPHGRFISRVQSATKGNVLLRKRQYQLSDDESWSLHAARLMIGGKIQNYRNILRRYIRDYGENENINRAVQVLEHAKREALATQDKTTLIGYEGMASNAYFEVLPVLILNQKADFPFHGRNRRPPKDAVNAMLSFAYTLIANDTSAALETVGLDPYVGFLHTLRPGRTSLALDMMEELRAYLGDRFVLSLINKRQITSKDFLFQGDNGVVMTDKGKKTFISAWQARKREVIIHPYLNEKIEIGLLPYVQAMLMARYIRQDIDNYPVFLIK
>NZ_CP051672.1|WP_057317110.1|953546_954212_-|CRISPR-associated-protein-Cas4
MYSEDDMLMLSGIQHFRFCPRQWALIHIEQQWDDNRLTIEGQILHKHVDDPFYRQKCGDQITLRAVNIASRELGLYGISDAIELLPSPSLEDTILHPKYPGRWRPVAVEYKHGRPKKDEVDEVQLAAQTMCLEEMYAIHIPYGVFFYGELRHRIEVAITDELRDIVRQCARDMHEIFSKTVIPKAKYERHCDKCSLKEICMPTIAKNCTTVDTYLNKHLYT
>NZ_CP051672.1|WP_170105113.1|954223_955102_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSEIKNRIDFIYIFDVQDGNPNGDPDAGNLPRVDAETGMGLVTDVCLKRKVRNYVQVAKSGQVGNDILVKSKEFSGEEVFINGEIRKTYEDLGIKLEKGKAPADKVSIGREAMCKRFFDVRTFGAVLSTGANAGQVRGAVQMTFARSKDMVVSEEHALTVCAARDEEKTYESQVGIQGRKFTVPYGLYICHGFISANLAQQTGFSEEDLALFWEALKNMFDMDRSAARGLMSAQKLIVFKHDSVLGNAPANKLFDLVKVEKVCDGAPRSFGDYHVTIDKEHVPSNVTVEELI
>NZ_CP051672.1|WP_154396346.1|955128_956838_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILKALYDYYHRSGNLPIMGMELKEIGFIIVIDKCGNFLRFEDRRIDKKSAQQFLVKKSVGRSSAPVANYLYDNSQYVFGYSDKGDMESMRKYFDTFKAKVEEIYDMFSDNETMQAVYAFYQQEPSDIVEAMQNDSLWDDINKNLNKKYSTFSFLIEGDTEIVASKRKLINLESGGNDVGGGLCLVIGKHSKTVEVTTATMIPGSQATAKLVAFQVNSGYDSYGKSKGHNAPISEEAEFAYTTALNHLLRSDSHNKFMVGSRTYLFWASSDSEAAKKSEDSLFALLGRTEENDDPNMLIKLVRRTFMSIYNGVLFANKDDKFFILGLAPNSARIAVVYWNELPLREFAGLISKHFADMEIVDTRKDKKPYVGLHSILGNVTLGGKSSDATPNLPDAVVKSIFQGLPYPASLFQACIRRIRAEQSVNIGRAAIIKAYLNRLNDNNNNKKLDIMLDKENQNQGYLCGRLFAVLENLQYAANKQDTIRSSYMNAASATPSAVFSTILKLSNSHYSKLLKDKKGLANFFDNQKKEIIALIHDFPNTLDLNDQGRFFLGYYHQKNHREYKETEE
>NZ_CP051672.1|WP_011966343.1|956834_957515_-|type-I-C-CRISPR-associated-protein-Cas5
MDYTDKEYCLEVWGDWACFSRPELKVERVSYDVITPSAARAIFEAILFKRYAMRWQVTKIEVLNPIKWTTIRRNEVGALAGKSSIFIEDKRQQKNSLLLQGVRYRIHAKLVFIPVKDRPKEAFIKHQPSDDENPMKYYQMFERRASQGQCFTQPYLGCREFAANWKYIDNTEQLAPPLAEDRDLGIMLYDMDFEGNVQKPNAMFYRVRMEQGVIVVPDKDSEEVLR
>NZ_CP051672.1|WP_170105115.1|957528_959754_-|CRISPR-associated-helicase-Cas3'
METEKQLISHLYQNKENGKWIIQTNDEHQRGVAEMATSYSGLFGLPSWGHTLGMLHDKGKERDAFQQYIRTTSGLPVTDEKSYGEHHHAFVGGILVTNLMGKSVFNLLANQIISHHTGLHDYIDAESVIEKRQLPEEINKGDIALNIPQLREELLESPFSKLKVDMKHFHHLSRMLFSCLVDADRLNTERFMDVESWKKRGCSSTLTDLLPKLEAHLRELQLYAPDTKVNHIRKKVQERCRKASSEEKGFYSLTVPTGGGKTLSSLLWAMKHAVNHGMNRIIIAIPYTSIIVQTAGLLKEIFGEEHVLEHHSNFNPDEIKNEEVREKAKLATENWDYPIIVTTNVQLFESMFSNKPSDCRKLHNIVNSVLILDEAQTLPTDFLQPIVDALKAYQKIFGVSVLFTTASQPVLSGLIEGTNPKANFEGIDRIIEIIPNEFALHDKLRRVKLVIDNTGKTYDEIAAEVAIYNKVLCIVNTRKDAKELYDRLPNEGIKLHLSRMMCPAHISETIRKVKALLKDKSHPIVRVIATQLVEAGVDIDFPVVFRQESGLDSILQAAGRCNREGRNTVGTTFVFSLAAEKRIPFGTMKAANNARLNLPADSDWFGPSTMTEYFHQLYCRKNTFDDKDMKHYLYNPNELCFETASKKFRLIDDDCMNIIVNWGNSMELVEKLKESGCTYPLMKQLAKFTVGVHSSDFDKLVSYGAIEEVLEGIYVLTDRVQYDKNTGLSLDNHWMEELLMI
>NZ_CP051672.1|WP_011966341.1|959824_961174_+|MATE-family-efflux-transporter
MAKQNSPLVLGTEPIGKLLTQYAIPAIIAMTASSLYNMADSIFIGHGVGALAISGLALTFPLMNLAAAFGSLVGVGASTLVAVKLGQKDYEGANKVLGNVLILNVVLGVAFTIAFLFLLDPVLYFFGASENTISYARDYMRIILYGNVVTHMYLGLNAVLRSSGFPKMAMYATLASVVINCALNPLFIFGFGWGIKGSAWATVISQVISLTGQLIHFSGPKQLLHFKKGIYRLRSEIVKGILSIGLSPFLMNLCSCLIVILINRGLKEHGGDMAIGAYGIVNRIAFLFVMIIMGFNQGMQPIAGYNYGARLYSRVTDVTRLTMRWAVGVATLGFLLCQLVPSWIVRMFTSDGELISAASYGLHIVFAVFPIVGFQMVATNFFLSIGMSKKAIFLSLTRQMLFLIPCLILLPPLFGTLGVWISMPIADTVAAIVTAIVLVKQFKQFKYGT
>NZ_CP051672.1|WP_170105117.1|961163_962192_+|agmatine-deiminase-family-protein
MEHNVILPAEWYPQSAVQLTWPHENTDWAPILDEVIPCFVAIAKEVIKREKLLIVCPDETAVREQLGEVDYDRVIFREMDTNDTWARDHGGISVFDEGTPMLYDFVFNGWGMKFAANHDNLITRNLCHMKTFSGEVVPANMQPFVLEGGSIESDGKGTLMTTVECLASVNRNEYLQQEELERYLKDVFGLDRILWITSGYLAGDDTDSHVDTLARFCSEDTIAYVRCEDEEDEHYEELKAMEEEIKEFTRANGEPYRLIPLPMADKVEWEGERLPATYANFLIMNGAVLVPFYDSPKDEIAKAALREAFPDREIIGINCLPLIKQHGSLHCVTMQYPEGFIK
>NZ_CP051672.1|WP_170105119.1|962343_963219_+|carbon-nitrogen-hydrolase
MKVGLIQQKNTADRAANIEKLKVNIRKAAREGAELVVLQELHNGLYFCQTEDTSMFDLAETIPGPSTETFGALAKELGIVLVLSLFEKRAPGLYHNTAVVLEKDGTIAGKYRKMHIPDDPAYYEKFYFTPGDLGFEPIDTSVGRLGVLVCWDQWYPEAARLMAMRGAEMLIYPTAIGWESSDTQEEKDRQLGAWVTIQRGHAVANGLSVISVNRTGHEPDPSGQTGGIRFWGNSFVAGPQGELLTVFPNDEEEVRVIEIDKTRSENVRRWWPFFRDRRIDAFGGLTERFLV

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Crispr_ID: NZ_CP051672_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051672_2

4206472-4206580

Orphan

Consensus_repeat	Method
ATAGCTATCAAGGGCAACTCGCCAAATGGCTGAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051672_2

>merge|NZ_CP051672|2|4206472-4206580|CRISPRCasFinder
ATAGCTATCAAGGGCAACTCGCCAAATGGCTGAAAAATTACCAGATCCTCGGGTTGGATATGTTTCTTCTCTATAGCTATCAAGGGCAACTCGCCAAATGGCTGAAAAA

>NZ_CP051672|2|2|4206472-4206580|CRISPRCasFinder
ATAGCTATCAAGGGCAACTCGCCAAATGGCTGAAAAA	TTACCAGATCCTCGGGTTGGATATGTTTCTTCTCT
ATAGCTATCAAGGGCAACTCGCCAAATGGCTGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051672.1\|WP_170106175.1\|4207415_4207916_-\|prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239827
NZ_CP051672.1\|WP_170106179.1\|4211668_4214005_-\|prevent-host-death-protein	unknown	unknown	gnl\|CDD\|372685
NZ_CP051672.1\|WP_170106177.1\|4208655_4209219_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP051672.1\|WP_170106577.1\|4214902_4215502_-\|urea-carboxylase-associated-family-protein	unknown	unknown	gnl\|CDD\|378156
NZ_CP051672.1\|WP_170106169.1\|4203008_4203299_+\|GTP-cyclohydrolase	unknown	unknown	gnl\|CDD\|225225
NZ_CP051672.1\|WP_170106167.1\|4201294_4202485_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381304
NZ_CP051672.1\|WP_170106176.1\|4207922_4208540_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP051672.1\|WP_170106172.1\|4204873_4205491_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP051672.1\|WP_170106182.1\|4217888_4219103_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP051672.1\|WP_170106178.1\|4210666_4211566_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP051672.1\|WP_170106578.1\|4219315_4219864_+\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NZ_CP051672.1\|WP_170106168.1\|4202732_4203002_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378913
NZ_CP051672.1\|WP_170106576.1\|4203953_4204238_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051672.1\|WP_170106171.1\|4204262_4204838_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP051672.1\|WP_170106180.1\|4214127_4214868_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP051672.1\|WP_170106181.1\|4215562_4217905_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
NZ_CP051672.1\|WP_170106173.1\|4205503_4206253_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051672.1\|WP_170106170.1\|4203295_4203826_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP051672.1\|WP_170106575.1\|4200254_4201262_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|214009
NZ_CP051672.1\|WP_170106166.1\|4199716_4200232_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP051672.1\|WP_170106175.1\|4207415_4207916_-\|prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239827	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.	4.95392e-62
NZ_CP051672.1\|WP_170106179.1\|4211668_4214005_-\|prevent-host-death-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	1.28967e-18
NZ_CP051672.1\|WP_170106177.1\|4208655_4209219_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.2693e-09
NZ_CP051672.1\|WP_170106577.1\|4214902_4215502_-\|urea-carboxylase-associated-family-protein	gnl\|CDD\|378156	pfam09347, DUF1989, Domain of unknown function (DUF1989). This family of proteins are functionally uncharacterized.	1.53684e-57
NZ_CP051672.1\|WP_170106169.1\|4203008_4203299_+\|GTP-cyclohydrolase	gnl\|CDD\|225225	COG2350, COG2350, Uncharacterized protein conserved in bacteria [Function unknown].	4.96965e-15
NZ_CP051672.1\|WP_170106167.1\|4201294_4202485_-\|aldo/keto-reductase	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	3.69776e-180
NZ_CP051672.1\|WP_170106176.1\|4207922_4208540_-\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.82757e-43
NZ_CP051672.1\|WP_170106172.1\|4204873_4205491_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.93169e-10
NZ_CP051672.1\|WP_170106182.1\|4217888_4219103_-\|MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.69073e-39
NZ_CP051672.1\|WP_170106178.1\|4210666_4211566_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	9.32426e-21
NZ_CP051672.1\|WP_170106578.1\|4219315_4219864_+\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	2.51932e-09
NZ_CP051672.1\|WP_170106168.1\|4202732_4203002_+\|transcriptional-regulator	gnl\|CDD\|378913	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain. This domain appears to be a zinc binding DNA-binding domain.	7.28545e-34
NZ_CP051672.1\|WP_170106171.1\|4204262_4204838_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.43379e-29
NZ_CP051672.1\|WP_170106180.1\|4214127_4214868_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.76762e-18
NZ_CP051672.1\|WP_170106181.1\|4215562_4217905_-\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	1.23794e-68
NZ_CP051672.1\|WP_170106170.1\|4203295_4203826_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.85335e-40
NZ_CP051672.1\|WP_170106575.1\|4200254_4201262_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|214009	cd12810, Esterase_713_like-3, Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated cyclic compounds. This family contains uncharacterized proteins similar to a novel bacterial esterase (Alcaligenes esterase 713) with the alpha/beta hydrolase fold but does not contain the GXSXXG pentapeptide around the active site serine residue as commonly seen in other enzymes of this class. Esterase 713 shows negligible sequence homology to other esterase and lipase enzymes. It is active as a dimer and cleaves esters on halogenated cyclic compounds though its natural substrate is unknown.	0
NZ_CP051672.1\|WP_170106166.1\|4199716_4200232_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00155114

>NZ_CP051672.1|WP_170106173.1|4205503_4206253_+|hypothetical-protein
MKLQTLCFEGDYALEKREKEKSNYCYVNLYAVTFGIAQFILTELQPIDLDGCGKLTICANVEPQNETYEPGYHTSPELGVSWYNLDLETSRKLYEFYTSGKIFSWELGDEFVNYVSNLVLDILVEIDRVQGGKNSLAERRNDILERMRECGYEKEILLERYSKLRCDRKYRAKVYRCIGHGTGDAIRVDLVRCATDEVVVSKWLHDELPNTGDMAGAVTKTAWDGNAFHVTFYRSEPSWIETVELPENE
>NZ_CP051672.1|WP_170106172.1|4204873_4205491_+|sel1-repeat-family-protein
MSGLTEQYKIIQQFIRLYAGEGDLEQARAAVSAITPVAEKGNIKAQYMLGKYYSWGYGEDCDNQKAIYWFEKVADKGNEKAAEALVNLYRYDFPDDGIEAQEKKAFALKWHKRWIAILEEKVNKGVTGAAQALMNLYVNDCPDDIAPEEGIAIARKWYDCWIEILKAKANKGDMSAKKKLAEILYYGTGVPDEVLELVDNDEDDA
>NZ_CP051672.1|WP_170106171.1|4204262_4204838_+|sel1-repeat-family-protein
MSKLSEQINHYKEIIESDEPFSMKDEAWYMMGQAYRQLADFKKAFTCFKKAAGLNYSEAFAMVGDAYLDAQGVKKNPAKARLWYKKGADMGEITATLKLADCYKRGIGGLVDYSKAMEQYLHLAERTGRFWDKYADSIGRALYEIGNMYLNGLGVPVDLKKAARYFKLAAKKGNPDAENVLNSERFKDFTR
>NZ_CP051672.1|WP_170106576.1|4203953_4204238_+|hypothetical-protein
MVVLPFAVARLASECSGMALCMMLFFIINPVYSVILGLNCGRNIRRMWSFPLISSITFLAGTWLFFDIREVWFLVYAAIYLLLGWIAMFIRKYA
>NZ_CP051672.1|WP_170106170.1|4203295_4203826_+|GNAT-family-N-acetyltransferase
MIETERLILRPWREDDILPFSEINSDKEVMEYLPKCLSLEETEQFYNRIVAEHNAYGYGLYAVETKSEGKFIGYVGFHHFDFDAEFSPGIEIGWRLAREHWNKGYATEAAKASLDYARRNRLFNEIYSFTTVCNHRSERVMQKIGMDRLGTFSHPALPEGHRLKSHVLYKLELCRI
>NZ_CP051672.1|WP_170106169.1|4203008_4203299_+|GTP-cyclohydrolase
MFIAILTYKKPLGEVDRFLAAHREYLAKHYAAGDFIAFGPQTPRVGGVIMMKANSRNAVDASIAEAPFHINGIADYQIVEFTPTMFITEDIKPFLI
>NZ_CP051672.1|WP_170106168.1|4202732_4203002_+|transcriptional-regulator
MEMKFCQSCGMPLADDNKGTNADGSRNEDYCIYCYKDGKFTQDMTMEQMIDHCARFTDEINKQSGQNLTKEQAKEMMRQFFPHLKRWKN
>NZ_CP051672.1|WP_170106167.1|4201294_4202485_-|aldo/keto-reductase
MKGKSNHEIRLEMSRRGFLKLAAVTGAAMCIEPTLNKVSAAERALTGRKPGVKDIPAGMAAVRAQRTLGSGKAAFTISAMGFGCMGLNHHRSQSPDEKACIRLVHEAIERGVTLFDTAESYGYHKNEILTGKALKGYTDRVFVSSKFGHKFVNGVQVKTEEDSSPANIRRVCENSLRNLGVETLGMFYQHRSDPNTPIEVVAETCAELIKEGKILHWGMCEVNADTIRRAHAVCPVTAIQSEYHLMHRTVEENGVLALCEELGIGFVPYSPLNRGFLGGLINEYTQFDATNDNRQTLPRFQPDAIRANTRIVEVLNAFGRTRGITPAQVALAWLMNKRPFIVPIPGTTKLSHLEENLRACDITFTAEEMAELEQAVAAIPVVGSRYDALQESKIQK
>NZ_CP051672.1|WP_170106575.1|4200254_4201262_-|alpha/beta-fold-hydrolase
MVMAALLAGCNARTEQILQIEEQGSFAVGGTVLTDSLGRTFHGDHAYVFYQKPVDARRYPLVFAHGVGQFSKTWETTPDGREGFQNIFLRRGFATYLVNQPRRGNAGRSTEEITISPAFDEEVWFNRFRVGIWPDYFEGVQFSHDKEALNQYFRQMTPNVGSVDFEVYADAYAALFDKIGPAIFVTHSQGGPVGWRTLLKTDNVRAIVSYEPGGGIPFPEGQVPEEGKILTLSKKTEGIEVPMSDFMKYTKIPIIVYYGDNLPETDEHPEIYEWTRRLHLMRRWAEMLNDLGGDVTVIHLPEIGLHGNTHFPMSDLNNVEVADHLSQWLHKKKLD
>NZ_CP051672.1|WP_170106166.1|4199716_4200232_-|GNAT-family-N-acetyltransferase
MKDYIFGLAEKKDIEDIFALYAERVRWMDAHGIRQWNVTRYLEHYPLSYYREQCEQGNLYSLRCAGDDLPVGAVVLRQSDERWPDKADVPAYYIHNLVTRPGIKEAGTHILAEAERLAVEHGKRLVCLDCAVDNTVLNEYYASKGYAEAGKFVEGSYCGMRREKHLPALRQ
>NZ_CP051672.1|WP_170106175.1|4207415_4207916_-|prolyl-tRNA-synthetase-associated-domain-containing-protein
MDSEARKKVFEYLNRLEIGFECHEHPAVATVEAAMQYCAGMEDVTHCKNLFLRNRKGDRYYLVILEWSKKPDIRSLGQKTGQRRLSFASPERMETLLGLSPGSVSLFGVINDTGHAVHLILDKELYSARKLSFHPNDNTASLVISNSGFHRFLEHCGNSYEFVELL
>NZ_CP051672.1|WP_170106176.1|4207922_4208540_-|HAD-family-phosphatase
MIKNLIFDFGNVLVNVDSHSVLKHYFKDDGEAEKRFRAILGSPEFVEACDRGLLSFDELIQEAQAGNPHFAGAFRFFHENYPDEVTGEIEGMRNLLAGLKTKGFKLYGLSNWSGEVYEVMRRYEIFELLDGQVISCEEHLVKPEREIYLRLCGRYGLTPSECLFTDDKPENVEGAKAAGMNAVLFTTPENYAADIERLCTEYLRR
>NZ_CP051672.1|WP_170106177.1|4208655_4209219_-|Crp/Fnr-family-transcriptional-regulator
MNNIIKRIKEYYPVSEESLNLLRGCFKQQIFPANTILIQAGRPDRKVYFIENGMTRSYILHDGKDVTTWFSMEGDAACGSWDLCRNKAGFEYVETLEKTTAYSISIEKLNDLYKSQIDIANWMRVLQQENFLRLQDTHISRLNLSARERYEKLAKEYPDIFNRVKLGHIASFLGMAQPSLSRIRAQY
>NZ_CP051672.1|WP_170106178.1|4210666_4211566_+|AraC-family-transcriptional-regulator
MSNIMKIDTVQQYSDYFGVETCHPLVSVIEGSKAKPLRFGRKLYNVYAILLKDAICGNLKYGQSIYDYQRGTMLFLAPGQVMGSEDDGQWHQPEGWALTFHPELLRGTPLASIMKEYSYFAYNANEALHLSEQERHTVIECMEKIRTELQYPIDKHSKSLIADNIKLLLDYCIRFYDRQFITRENANHDLLTHFESLLDDYFASGKAAKQGMPSVQQCADALCLSANYFSDLVKKETGMSALKHIQQKMLDVAKGQVFDTSKSISEISYELGFPYPQHFSRWFKKMAGCTPNEYRMLNA
>NZ_CP051672.1|WP_170106179.1|4211668_4214005_-|prevent-host-death-protein
MKKMLATLMAYIVCAAGVSAQTFQTVRGTVCESATGAPIEFATVMVADAELPIGTTTDSMGVFSMKVPVGRHNIQVSYLGYEPVILKEVLVGSSKEVVLNIGMTESPTNLNEVVVTPHINKAEPLNSMAVTGGRMLSTEEASRYAGGMDDPARLVSAFAGVSSNVGNNGIVVRGNAPRSLQWRLEDVEIPNPNHFADVTTFGGGGFTSLSSFVLGNSDFFTGAFPAEYSNALSGVFDMNMRNGNNQKWEHAFKVGVLGIDASSEGPFKKSYNGSYIINYRYSTLSLLSPLLPDDADGTNYQDLSFKFFLPTKKAGIFTVWGTGLIDKSGTKVEKNRDKWEYDQDMENQDVKQYMAAAGIGHRLNIGKSAFLKSTLAFTVSGLDMHTERMNPETDVLLNKDKIKNTYWNFVFASAFQKKYSSRHTNRTGIRLTGLKYDLDVRDALNKDGLLQTLADETGFSTLLSAYSTSTFRLSPKWTANIGLNAQVFTLNGNYSVEPRAGIKYQFRPNQSLSLGYGMHSRLEMLNYYFTKKDGEHINKDLDFTRAHHVSLAYDLNIGENHHLKIEPYFQYLYDAPIIPDSTYCFINLQGGDDLFLSDQLANKGKGMNYGIDITFEKYITNGFYYMVTASLFDSRYKTDLGKWYNTRYNRNYAVNLLGGKEWMTGRKKQNMFGLNLRLTLQGGERYSPVDELESANQETAVYNENTPFSKSLSPAFVGFIGAKYCINRKRVSHEFAVQIINFTGYKDYYGHRFNHKTGKVEPEREANMVPEISYKINF
>NZ_CP051672.1|WP_170106180.1|4214127_4214868_-|helix-turn-helix-transcriptional-regulator
MDKKLQNEYLRLFDSMNLREDCLDYIIADRHIKMLKESPYLKTTAITLYDNCRRCHIYESDYHRYLFKDEDGTYRDMQIHPDDMDAVVKNAISVLRHIFSQQTHIANSKLIRQYRVRINGIYKRITEEMQIIETDPAGNPWLSLSIVNISPDQEEPFIVRSKLIDTKTGDTFTPLDDLYDRDTILTAREIEVLKKISQGLLSKEISDILGLSVHTVNTHRQRILAKLNVNNSIEAVKYATVLGIIK
>NZ_CP051672.1|WP_170106577.1|4214902_4215502_-|urea-carboxylase-associated-family-protein
MTTTNDNGTIDRIIEPCGGLGFDVSATQLITIIDVEGEQVADFFAENAENPEEFLSTAVTIDCNESLRLNVGDMVYTNLYRPMFKIILDDVGTHDLLFPCCRQEMYDFFFKNGDRHPNCFDNINHSLNEHRPIIQPINLFMNTAIGTSGKIAILAPRTKAGDKIVLQALMDVRLGIAACSVSEGECNARKCTPIRVLIE
>NZ_CP051672.1|WP_170106181.1|4215562_4217905_-|TonB-dependent-receptor
MKYPYRIFLAAAFVLIGHAVCQAQQTYTIKGRVTSVNDKIEGFSAMLLLMKDSTMYKGDFFLSEEFSLQTDSLPALLRISSFGFRDTTLTVHPDEEFLNISLLPQPVWVDEVTVTARRPVFTARPGHYTMNVTNDILTQSGTAVDLLNKMARIRINEKQEISVLGVGNAVVWVDGRQLPDDRSLASITSSEIRKIEVITNPSAKYDAEGKAVIEITTKGPQDKPWGVELTSRIAKGEYWREYVGVEATAQIWRFSIYAFYAFNPQKELFSEDYTRDYTRTPFPRIIRNNVETVNDAVNNNYRFSADYRISDRHTVGLQASGHYNDTDMEVNDINRLQHTPQDNPQVFRSDQQGKLRKEYTSGTFYHSYNSASDKLSWNTLLDYSLFDTDKRMNIDETNSSGQTFRTNDEQTHIDIFSGRTDAQIRLPRDFQLEPGAKFTFSRNNSNTRFGESGKEIPTGYNYREGVAALYLLASKQLARFKAEAGLRMEVSDMYAKTDGNTIQDEQRTDLFPSASLSYRFSKNWSLNATYAKKITRPTFQDLNPAITYVDELSYSQGNPLLVPETRNTVDLKLVYMGFASLGVSYTRSKNSFGWQVLQDAANPAVTCATQINVDRSDSYTVDLMLPYQNKNLTAYLSTGLIYTTTHDSRLDGVNLKHPMWYCYSGLDMNLPWKLKLNANIGYYTKGVVNVFTAEPMFRMDAGISRRFLRDRLNVSLAWNDIFHSAKTSSYSTMDNRSLHYSFYNDQSFVQLSVSFSLNGIRDSFKSRSAIESETERIKGL
>NZ_CP051672.1|WP_170106182.1|4217888_4219103_-|MFS-transporter
MKKTGNNILIALIPLFTVSFVSHIAPYIYIPSLPDIADDLHLDEAQAGSMMSAYYLALSLTLLLVGIVGDRWNKRRMLAGASAVIFIGAMLGSLPSQFGWVLCGWALQGVGAATITIVGQTWIGQSSDKSNVTSLFSYMSIALSFAPLVAPVIGGTITDGLSWKYNFYGVGLLSVFSAMFIYKTTPPPPVQNIPVSVRQVFSDYRHILFRSGFVPLIATSLACFFFQGTLMAYSSFLFIDRLGLTPAAYGLISVPVVVGSIIGQFPVLYLEKKRGITAAFLFNSVVVVTALFSSLVFYMLTGTHTVVGLALVILVFSIGFGGHTLLAIRNVMTAFPSKRSHSSALLNFLNQFTGYIAAIAVQLLFACIGSVLSVHNMACGAASVFILFTSFIYLKHVKKNEISL
>NZ_CP051672.1|WP_170106578.1|4219315_4219864_+|PorT-family-protein
MKNLLLIAVMLFTAVGASAQFHASVRAGATATTLGEQKIKMGLRAGVGAEYLFSDRWGVRSGLFYTMKGATTSSDVFCYDPLKTTKLSYLDIPFEALVSFGLSQKSRLAVHAGPYLACLLHSSVPENAGYKTRRMEAGVGLGVDFTVGYFIVGPEIQYGLTRVNKPVSDHNICYAITLGYRF

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Crispr_ID: NZ_CP051672_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051672_3

5191137-5191223

Orphan

Consensus_repeat	Method
GAGACGGGGCACGCCCCGTCTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051672_3

>merge|NZ_CP051672|3|5191137-5191223|CRISPRCasFinder
GAGACGGGGCACGCCCCGTCTCATCCCAGCGAACAGGTATTCTAAATACTCATTAGATAGTACGGAGACGGGGCACGCCCCGTCTCT

>NZ_CP051672|3|3|5191137-5191223|CRISPRCasFinder
GAGACGGGGCACGCCCCGTCTCA	TCCCAGCGAACAGGTATTCTAAATACTCATTAGATAGTACG
GAGACGGGGCACGCCCCGTCTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051672.1\|WP_170106472.1\|5181977_5184632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051672.1\|WP_008773509.1\|5193921_5194704_+\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NZ_CP051672.1\|WP_005854479.1\|5179063_5179885_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP051672.1\|WP_005854505.1\|5202737_5203607_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|379804
NZ_CP051672.1\|WP_005854484.1\|5185652_5187083_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|131739
NZ_CP051672.1\|WP_170106473.1\|5196329_5197334_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP051672.1\|WP_005864418.1\|5201763_5202621_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|336409
NZ_CP051672.1\|WP_170106470.1\|5180043_5180889_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
NZ_CP051672.1\|WP_005854477.1\|5177432_5177876_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_CP051672.1\|WP_008773512.1\|5189602_5191123_+\|DUF4301-family-protein	unknown	unknown	gnl\|CDD\|372920
NZ_CP051672.1\|WP_011966674.1\|5184739_5185564_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051672.1\|WP_170106471.1\|5181381_5181711_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051672.1\|WP_170106476.1\|5200965_5201616_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP051672.1\|WP_121772280.1\|5191235_5192549_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP051672.1\|WP_008773508.1\|5194854_5196306_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP051672.1\|WP_170106475.1\|5200708_5200969_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_CP051672.1\|WP_095231454.1\|5187213_5189427_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP051672.1\|WP_008773510.1\|5192813_5193908_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379071
NZ_CP051672.1\|WP_005854478.1\|5177891_5178953_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP051672.1\|WP_170106474.1\|5197465_5200705_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377502

Protein	Function_ID	Function_description	E-value
NZ_CP051672.1\|WP_170106474.1\|5197465_5200705_+\|hypothetical-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	0.0097322
NZ_CP051672.1\|WP_008773509.1\|5193921_5194704_+\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	4.81878e-24
NZ_CP051672.1\|WP_005854479.1\|5179063_5179885_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.58435e-14
NZ_CP051672.1\|WP_005854505.1\|5202737_5203607_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|379804	pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like. This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.	1.70294e-21
NZ_CP051672.1\|WP_005854484.1\|5185652_5187083_+\|HD-domain-containing-protein	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	2.57986e-104
NZ_CP051672.1\|WP_170106473.1\|5196329_5197334_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.15047e-18
NZ_CP051672.1\|WP_005864418.1\|5201763_5202621_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|336409	pfam06445, GyrI-like, GyrI-like small molecule binding domain. This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.	3.26657e-34
NZ_CP051672.1\|WP_170106470.1\|5180043_5180889_+\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	7.29355e-63
NZ_CP051672.1\|WP_005854477.1\|5177432_5177876_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.86078e-59
NZ_CP051672.1\|WP_008773512.1\|5189602_5191123_+\|DUF4301-family-protein	gnl\|CDD\|372920	pfam14134, DUF4301, Domain of unknown function (DUF4301). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 505 and 516 amino acids in length.	0
NZ_CP051672.1\|WP_121772280.1\|5191235_5192549_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	7.05462e-42
NZ_CP051672.1\|WP_008773508.1\|5194854_5196306_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.93992e-26
NZ_CP051672.1\|WP_170106475.1\|5200708_5200969_+\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	5.86687e-24
NZ_CP051672.1\|WP_095231454.1\|5187213_5189427_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP051672.1\|WP_008773510.1\|5192813_5193908_+\|hypothetical-protein	gnl\|CDD\|379071	pfam13201, PCMD, Putative carbohydrate metabolism domain. This domain has been suggested to participate in carbohydrate metabolism. Structural evidence indicates that it might be a carbohydrate binding domain, with or without enzymatic activity. In particular, it has been hypothesized that it might act as a glycoside hydrolase.	1.6585e-95
NZ_CP051672.1\|WP_005854478.1\|5177891_5178953_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP051672.1\|WP_170106476.1\|5200965_5201616_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.72284e-14

>NZ_CP051672.1|WP_008773512.1|5189602_5191123_+|DUF4301-family-protein
MLNANDLEQLKAKGISEKQIEEQLACFVKGFPFLEIAASASVEKGIMVISKEEQASYMDAWDAYLAKNKKIVKFVPASGAASRMFKNLYEFLSADYKEPMNAFEKKFFSEIEKFAFYKALDKKCVENTGKDIPALVALGEYKEVVSNLLEPKGLNYGQLPKGLLLFHKYADTVRTAMEEHLAEGAMYAKNNAGEVNIHFTVSPEHQALFEQLVADKSGEYEEKFSVKYDVSFSIQKPSTDTVAAAMDNTPFRDKNDKLLFRPGGHGALIENLNDVDADVVFIKNIDNVVPDSFKCSTVIYKKVIAGVLVTLQEKAFRYLEQIETGKYTHAEVEEMIHFLQDDLCIKNPDTRLLEDAELILYIKSKLLRPLRVCGMVKNVGEPGGGPFLAVNPDGTVSLQVLESSQIDMSDPAKKAMFEQGTHFNPVDLVCAVKNYKGEKYNLPDYVDKNTGFISYKSKDGRELKALELPGLWNGAMSDWNTVFVEVPIETFNPVKTVNDLLRPEHQ
>NZ_CP051672.1|WP_095231454.1|5187213_5189427_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MDTIGFFTSEEKKLFFSKYRLLLRNLYSFLEREDIRKMKELMKRVVALDCYGRDKNGINGLLRNIDTALIATLEIGLKRTSVIALLLYRPVLKKAITIEEVEQKFGADVTLIIRRLLKTSDLYARNTAVNSENFHHLLFSFAEDVRVILLMIADRLCLMRMGKQIQEDDRIRLATEASYLYAPLAHRLGLYTIKSELEDLSLKYTDRKQYDFIKRKLNETKRSRDAYIAEFIAPIKRKLAAAGFKFDIKGRTKSIHSINNKLKKQQVEFEGIYDLFAIRIVLDTPLEKERSECWQVYSIVTDMYQPNPKRMKDWISIPKSNGYESLHITVMGPQNKWVEVQIRTRRMDEIAERGLAAHWKYKGVKAESGLDEFLNTVRAALEAKENNPLDLMQDFKMDLYKDEIYVFTPTGELIKLAKGATVLDFAFAIHTKLGSKCVSAKVNGKNVPIKYTLNNGDSVSVITSPAQSPKRDWLNFVVTSKARVKIKQALKEETVKAVEFAKEMLQRRFKNRKIDMDEPTMMRYIKKKGFKTVTDFYIEIAEERLDPNQVIDEYLEAFRKETETNERTEVRSAEEFVTMTPVEEISTNKDVLVIDKNLTGIEYKLAKCCNPIYGDEVFGFVSTQGIKIHRMDCPNAQEMFSRFGYRIIRAKWSGKGDNGYTVTLRVIGRDDIAIVTNITSVIGKESNVTLRSLNINSVDGLFQGNFTVLVRDTTALNLLTKKIKAVNGVKAVERLNS
>NZ_CP051672.1|WP_005854484.1|5185652_5187083_+|HD-domain-containing-protein
MYINEEEIVNHISAKPFHLISEAAEELGVEVYVIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGRGAYLSVFKNFGTAQVKAGDLELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALALCLNKERYGELVDPFGGLEDMDELTIRTPLDPDVTFSDDPLRMMRAVRFATQLGFFIDPDTFDAIIRNRERISIISKERIVDELNKIVLSPKPSIGFDLLDKCGLLPLIFPELCALKGVETKEGIGHKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNHNFIGERMIPGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDIDDLMKLCEADITSKNPEKVRRFLNNFRKVREKLADIEEKDRVRNFQPPVSGEEIMETFGLAPSKPVGVLKEAIKNAILDGVIPNEYEAARQFLIQRAEKMGLKPIL
>NZ_CP051672.1|WP_011966674.1|5184739_5185564_-|hypothetical-protein
MKKLAICITLIAAILTGCNGDEKAAQARLDKARAMYENNEFFGAKNEIDSIRALYPKEVKVLKQGLTLMRQVEVKEAERNIAFCDSLLPIKLEEVEGLKKGFAFEKDSVYEEIGNYIWKQQTIERNVQRCYVRCGVNEEGEMYLASVYYGGRPIEHTGIKLSLKDGQFAETASIPYDGGLNYRFKDMGSTTEVVTYKGEHCVDAVKFIYDNEKERIKVEYTGGKPYIIYMADADKKAIVNTFNLATVLSDIKSMNTLKEKSEKKIAYLKNKLEE
>NZ_CP051672.1|WP_170106472.1|5181977_5184632_+|hypothetical-protein
MDKKCTLIAAALMVAGVFSANAQSSTTVPEAQWKAGNYYYLKTGSSVLSLSGEKADSVIVKTLASDATKAAIDSALWQITNAGTTPAGPVYQFKNKKTQAVLSFAASSTAKPVITSGVNQWTFSDAAGGSAIQAYYRNNQILALDVVGTDLSLGSSASSTKFTVEAPSDAMYLSASELGDGFQVFQLTFGGNYQGNIFEGKNLIAKNTAAPATGAIANAKYVTLQIQGDQVFSDGKAKYLGVDTLKNVIAGATGVYGAKFTADSTYDASGLHTLGNADFQKFYFTINLKNDALAMYAAAAPTVNASPMTSVPNVRVVYASVIETKALTVSDLQSGSTQPAQGAAPVITVTKGTPSTIATGTGVYFLKSASKGDKGGQYAVAYDKSVTPNKLVTAAGFKPSIYQPKGQWYIKENNGMYSVVDRNTNTTIISNEEIFAVQGMANTYTFGGSTDSITVEYQANVDLKDKFLGTRHFSAEELADNGYVLNLISGTPGVDDLYAFTSDSVLMIKSGDAANAAALRIVVSQDSVQNVTDGLGARALGDTLYHATYMLKERFSNDLVASENGGPLKLSDYTAPLEFVFNTATIGGKYQMATRVGATTQYVFMNVNTANLILSDKVNYFDFVAVEAPEYASIDDSHKRFGTNGKFLTMNPLNFFAEVKNEGQDILKSTYETDNFSLWVQEADTVIAGKPLYFITTSIYTPETTTKAVSPRYYMVSLRDSNETFVSNGATYYRVGFSDKANIVPSLDNNALFAFKTTQDGGYLLENQKELNRTVAAGELKTPYVGVVNNVVVMSNVGVPFTIENAPTPVSNEQLEEVASFTVIAGEASVTVLNAAGKTVTLSNILGQTTASAIASSDNFVMPASKGIVVVSVDGETAQKVVVK
>NZ_CP051672.1|WP_170106471.1|5181381_5181711_+|hypothetical-protein
MKKIVYGAIVALCGLFIAPDVEAQAGMVGSAKETVAQDKFYPIEVTDMPQVLRDAVNTSYEGCMVKSVEVSNNSTFVKYKVVLLSRNGKIYKVYFDDRGHVVKEHAYFE
>NZ_CP051672.1|WP_170106470.1|5180043_5180889_+|mechanosensitive-ion-channel
MVLLAAVEASSKLEEAIRSLVEHGSQLGFTIIKALIVFLVGRLVINLLNKLVRKILSKRDIDPSVKTFVGSLVNVSLTILLIISVVGALGVQTTSFAALLASAGVAVGMALSGNLSNFAGGLIILLFKPYKVGDYIEAQGVGGTVKEVQMFHTVLGTVDNKVIYIPNGSLSSGVVTNFSNQTTRRVDWTFGVEYGSDYEKVKQVIESVLAKDSRILSEPAAPFIALTALADSSVNVVVRVWVNSSDYWGVYFDINKNIYATFNEVGIGFPFPQLTVHQAKE
>NZ_CP051672.1|WP_005854479.1|5179063_5179885_-|tetratricopeptide-repeat-protein
MKILAILAALFLSIGYGHAQTYEKFVEKSFDFLDKNDLVSAEESLRAAMRLEPGNPNNYALLMNLGTIQRRQGKLEDALLSYTAALSRHPNNEAILENRAGLYTEMGEIEKATNDYNALLILNPHHQEALYCRAMLHLQHKNYLLAEQDFDKILEVNEKSVKGRLGHAILEKLRGNYDESERIFNYLINEMPREWILYEGRADLYFMMGKNARAMADINRIFVESTPTAALYVLRGKVKLAQYEKASAALDFKKAEDMGYDKTTIDELMKMAR
>NZ_CP051672.1|WP_005854478.1|5177891_5178953_+|3-isopropylmalate-dehydrogenase
MKLNIAVLPGDGIGPEISVQGVEVMSAVCEKFGHEVHYEYALCGADAIDKVGDPFPEETYRICKDADAVLFSAVGDPKFDNDPTAKVRPEQGLLAMRKKLGLFANIRPVQTFKCLLHKSPLRAELVDGADFLCIRELTGGMYFGEKYQDNDKAYDTNMYTRPEIERILKVGFEYAMKRNKHLTVVDKANVLASSRLWRQIAQEMAPSYPEVTTDYMYVDNAAMRMIQEPKFFDVMVTENTFGDILTDEGSCISGSMGLLPSASTGESTPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFEYFDLKEEGALIREAVDASLDANVRTPEIQVEGGAKYGTKEVGSWVVNYITEK
>NZ_CP051672.1|WP_005854477.1|5177432_5177876_+|methylglyoxal-synthase
MKKLTIALVAHDNRKAEMVEWAVHNAEFLSHHHIVCTGTTGNLVRKALEEKGVNADIACMHSGPMGGDAEIAAMVVRKEIDLAVFLIDDLNPQPHEADIQMLLRQCRVHNVPIACNRYSADLMITSTLWDDDTYFPTEPKYVHFNRE
>NZ_CP051672.1|WP_121772280.1|5191235_5192549_-|Gfo/Idh/MocA-family-oxidoreductase
MTTRRDFLRQTALLGAGLTISPFFIKAGNAGVGANDKIGVGLIGCNGMGFEDLKAFLRNPEVECIALSDIDENVLNNRAAETEKITGKKVKHLYKDWRKLIDNKDIDLVIVGTPDHWHCLQMVSACQAGKDVYCEKPLGNSIEECNIMVRAAQKYNRVVQVGQWQRSDPHWQDAMQFVHSGQLGKIRTVRVFSYQGWCPSIPVKPDEAVPAGVDYDMWLGPAPRRPFNRNRFHFTFRWFWDYAGGLMTDWGVHLLDYALYGMNVTAPESIMASGGKFGYPDDACETPDLLQTIYTFKDFTVMWDHAIGIDDGAYGRNHGLGFVGENGTLVIDRDGWEVIPEKVNGQARMEAVPLKNSYGEGGLNLHVKNHLECIKSRNRNCNASVEIGAHIAKFSQLGNIAYRTGKKLSWDGKSFHDTEADKLLCKEYRAPWELPKI
>NZ_CP051672.1|WP_008773510.1|5192813_5193908_+|hypothetical-protein
MKVQSFVLCFLLTLLSVSCIREEAPNAEADILSCTVDGDILKAEPEIDNESVTLTVKSDADITNLAPVFTLTPGATIKPASGTAFDFTTPRTYTVTSEDGHWTKTYTVRCIVSGVSTEYHFEHITMEPKNERYQIFYDFTSNGDSVTWASGNAGFGLTGVPKTPLDYPTMQDDNGYIGKCAKLVTRSTGSFGSGFGMPIAAGNLFIGTFDLLNAIPDARKGTRLGRPFDHVPTYLSGYYKYKAGESYKVNGEEVKGKKDQCDIYAIFYETDENVKYLDGFNGLTSPNLISVARISDQKETDEWTRFYIPFVAKPGKVIDKDKLAKGGYQLSIVFSSSLKGDVFEGAEGSTLWIDEVEIIQSGEN
>NZ_CP051672.1|WP_008773509.1|5193921_5194704_+|PorT-family-protein
MKRYIVLIGILCLSGVVTLKAQQERNQGIIWSSLRGLEYTVKAGINIGGTAPVPLPREIRAIDSYRPTLCVSIEGDIKKWFGESKEWGMMIGLRLENKGMETKATVKNYSMEIIGSGGEKLKGNWTGGVQTKVENTYFSIPVVALYQLNNRVSFSAGPFVSFATNRNFSGYVYDGYLREINPTGTKVEFSGDNRASYDFSDNLRKFQWGAQIGTEWKAFKHLIVYADLTWGLNDIFQKNFDTITFGMYPIYLNVGFGYAF
>NZ_CP051672.1|WP_008773508.1|5194854_5196306_+|Gfo/Idh/MocA-family-oxidoreductase
MKENTKKGVSRREFLGLSALGLASLTILPSWAIDGVRIAPSDRVVLGFIGLGQQALSDFKGFAACPGVQVAACCDVDTMKTERFRRRVAEWQASKGMNQRCDQYEFYEDLLERKDIDAIEVATPDHWHALATIHSCQSGKDVYCQKPLAYTIAEGLAMVKAVRNNKRVLQVGSQQRSSREFQAAIDMVQNGAIGHIEKIYARVGEPPTPLSLPEMPVPANLNFNQWMGPLNDPKIHYHPDLCPPISLNPEENEKLWGAWRWYQETGNGYTADWGAHMFDIAQAAIGMDGSGPVEFTPKGYNGTQYSTMRYANGIVMTEQPYLEDNPDAQGIKFIGDNGWIEVARGYINCSDQSKIPADLKDLIEKRPRMITPEERKKMYEEYMKKLKDKKNKQGGNNGNYETSAPHMQNFVDCVRSRENPIAPVEVGCSTNTLCCLQNIARELGRPVKWNPATLSFGNDKEAAAHRLYWYQYRNPYTLPYFCK
>NZ_CP051672.1|WP_170106473.1|5196329_5197334_+|sugar-phosphate-isomerase/epimerase
MSNRRDFLKNMGLFTASGLLASKGTSASVVNHVPETVGEVHAGKEIGLQIYSLSQELYKGDVAANLRKVKDMGYSKLELAGYGKGAVGGVPMMEFKKMVEDAGLKIVSSHVNPVDASASDPRRAMIREYSKEITPKIMEYWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNHNMEFNRVATKEQQEKVKGNPFAAFMKVGDQIYDLMLKDTDPSKVYFEMDVYWTVMGQNDPVEYMQKHPDRIKVLHIKDRAVFGQSGMMNFEMIFKQMYANGIKDYFVELEQMPDGRTQFAGVKDCADYLIKAPFVK
>NZ_CP051672.1|WP_170106474.1|5197465_5200705_+|hypothetical-protein
MSSRIWKILKHTVIAVLSLAVLFLVLNLFLTGRLERYLKRELIERTANATDGFYRLSFDKLSISFFKGELRLEGISLEPDSKVFEHWAALDSLPDTYVSTRIEVIDFKGINLVWRWNYRQLHFNTFEIRSPEVRVYGSSGSNPLVSGLAADTVEHAESKTLYEVISPYIDALSVKTLNLENASISYNVENQVSPIIYTLNNVSFHAYGFMLDSTSSRSGKLLYCDNFDFVTNQPQTLLVNNDFKLETDSICLSTQDSIIYIQKIQLLPQELLWGETNRKPTNYLEGKVQTVEIQGIHFRREDALNYLSARNFEIQSSDIKVYDLTREKKQANADADSLVQALSLYDVISPVLHSISVDQIRIERTALHYSLALKGQIEDFSIPEFNFHAEGLLIDSLVAPGEELNYFRSIAFEANDIQGIMRARNHRFDIKRLAMNTALGSFHIDSMRLRPLSVRSHNDYLSGSIDTIRIDGLAYDKGVSADLLKVRSPRLVYYKTPSVESPDKGKSTSVNSRVDVESLLNPFLRYLSIRKIQIQNANVTLEDREINDTTRYRLNGLNFFATNFLVDEQTNRSGQLFFKYDHFGLSFRDFDNYLPGKELRVTIRKGSLSTVNGSFRLQDVTLAAKKDSIRFSTPLISLTGIRIPKNSIYQIGFDRFDLSDGDFSMSWGSDTTILRTESQKDIQLALENVFVDLKKKTFQLGDLQLQTKDIDIPLDNGFYRLKIGGLDLRESGLRLDHVHLVSPYSKMEFAYKQPKHQDWFDVKVGNVRLTDVDIPGYFSTKELHVGGLWINDVLLQNLKNRKIPVEPHIVPMIYEGLQKAPVRFKIDTASIANFSVVYEELPVKGDKPGKLYFTDMNGQFSGLTNIVSYPEQFITLHADGNLMGSGHFTATWQLPVDSLYDRFLLDARLDSLDLLSLNEIIKPLAPAEVVSGWAQDVVFHMDASSRKGRIRLDFPYRKLKVALLKEKDGETTQKGFLSRLANLVLRDNNPAHPERKDSKLRKVDMEIVRDPYHSTFNYLWQMLRPALVESVGVSKKEQDAALKVAGFFTKVKRFFGLDKKKDKREEIDTNNKEIEPLKE
>NZ_CP051672.1|WP_170106475.1|5200708_5200969_+|N-acetyltransferase
MEYTVNHYPDKHRFEVVEDGLTAYVEYRLRRDALDIIHTIVPKNLEGRGIAATLVETAYKYAKEQGLRPLATCSYAVVWLKRHPEF
>NZ_CP051672.1|WP_170106476.1|5200965_5201616_-|pentapeptide-repeat-containing-protein
MLKITAPRLVKNLREDVDWMDYISRQEDDFTECSFNGLCVEDVSKQNLSVNSCLFTNCGFIACNYRKSQFSDVLFKNCDLSNINLSGCGFYRVEFIGCKLTGTNFSESIFNHTTIRDCKGDYVIFSMSKLRNVSFNQCFLRGGGLDNCQFTNVEFEHCNLVEAEFHRTSLKEIDLTSSEIAGIRIGSIPGGELKGATVTSLQALDIARMLGITIKD
>NZ_CP051672.1|WP_005864418.1|5201763_5202621_+|AraC-family-transcriptional-regulator
MRIKTTTKTEYQQRINVLVEYINNHLGEDIDLNKLAEISGFSRWHFHRIFAEFLGEPVGTFIVRMRVETAARLLRYTEIPVKEIAYKVGYDVPSSLSKVFRQFYGISPNEYRNNKDYVIMEPNRIMPDMELKVEVKDLPGKQVAYIRLNGGYKEIDYLGTWMRLLQFAKEQNIQPLSFSPICLYHDDPKVTSPDKLRTDICMEVAPSVCPKGEIGTKKVLEGRFMVALYKGTYQQLGAVYDTLYGKYLPEMGLSLREVPSGEIYLNDPRNTKPEDLLTQIYVAVE
>NZ_CP051672.1|WP_005854505.1|5202737_5203607_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MNYTFELKELQATHIVYLHHQGDMSMIPSSIRKLMQWAGPKGLINGPANKLISVYQHEGKELSVDIGLTVPQEVEGENEISKGLLSGGLYAIGHFEIGTDEIPAAWSLMYTLTSKHQCKPCAGKSFEIYQSIPLDQHPQDKCMIDLCIPVQMIDLKLIEEKAISILTECDTAMLASVTEEGYPRPVPMGKIKADGISQIWFSTGTFSDKTIQFQLNPKAGVCFMKGGDSIVLTGKVEIVSDMEIKKALWSDWMFAHFPGGVIDPSYCILKFTSEEATYWIDNEFVKASI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP051672_1	1.20\|951990\|37\|NZ_CP051672\|PILER-CR,CRISPRCasFinder,CRT	951990-952026	37	NZ_CP051672.1	738159-738195	0	1.0
NZ_CP051672_2	2.1\|4206509\|35\|NZ_CP051672\|CRISPRCasFinder	4206509-4206543	35	NZ_CP051672.1	627250-627284	0	1.0

1. spacer 1.20|951990|37|NZ_CP051672|PILER-CR,CRISPRCasFinder,CRT matches to position: 738159-738195, mismatch: 0, identity: 1.0

cttcagttcgtcccttccatatctggtttggaagata	CRISPR spacer
cttcagttcgtcccttccatatctggtttggaagata	Protospacer
*************************************

2. spacer 2.1|4206509|35|NZ_CP051672|CRISPRCasFinder matches to position: 627250-627284, mismatch: 0, identity: 1.0

ttaccagatcctcgggttggatatgtttcttctct	CRISPR spacer
ttaccagatcctcgggttggatatgtttcttctct	Protospacer
***********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP051672_1	1.11\|951393\|33\|NZ_CP051672\|PILER-CR,CRISPRCasFinder,CRT	951393-951425	33	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	121860-121892	8	0.758
NZ_CP051672_1	1.13\|951523\|33\|NZ_CP051672\|PILER-CR,CRISPRCasFinder,CRT	951523-951555	33	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	121860-121892	8	0.758

1. spacer 1.11|951393|33|NZ_CP051672|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 8, identity: 0.758

ttctttaaagccttggcataatccccggtggat	CRISPR spacer
gcatcgaaagccttggcataatccgcgctggag	Protospacer
 . *. ****************** ** ****

2. spacer 1.13|951523|33|NZ_CP051672|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 8, identity: 0.758

ttctttaaagccttggcataatccccggtggat	CRISPR spacer
gcatcgaaagccttggcataatccgcgctggag	Protospacer
 . *. ****************** ** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

363589 : 373485

Catovirus(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_170104909.1\|363589_364525_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI6	Catovirus	1.6e-29	29.1
WP_170104910.1\|364521_365772_+	HAD-IIIA family hydrolase	A0A0N7G7I9	Chrysochromulina_ericina_virus	5.5e-06	24.7
WP_170104911.1\|365786_366776_+	GHMP kinase	A0A067XQL1	Caulobacter_phage	3.8e-42	36.1
WP_170104912.1\|366777_367347_+	SIS domain-containing protein	A0A067XQR2	Caulobacter_phage	2.4e-25	35.9
WP_170104913.1\|367348_368161_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_170104914.1\|368391_369597_+	UDP-N-acetyl-D-mannosamine dehydrogenase	A0A127AXI2	Bacillus_phage	6.1e-26	26.5
WP_170104915.1\|369626_370787_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	3.6e-28	28.5
WP_170104916.1\|370783_371974_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_005867972.1\|372169_372631_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.2e-21	42.7
WP_005855789.1\|372855_373485_-	master DNA invertase Mpi family serine-type recombinase	H2A0H0	Bacteroides_phage	7.0e-50	54.8

DBSCAN-SWA_2

808775 : 861280

BeAn_58058_virus(25.0%)

protease,integrase

attL 827802:827817|attR 866863:866878

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005856073.1\|808775_810005_-\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_024986818.1\|811482_811818_-	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_024986817.1\|811849_812149_-	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_036617877.1\|812297_813020_-	hypothetical protein	NA	NA	NA	NA
WP_024986816.1\|813032_813395_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_024986815.1\|813398_814157_-	ParA family protein	NA	NA	NA	NA
WP_154398040.1\|814239_814413_+	hypothetical protein	NA	NA	NA	NA
WP_024986813.1\|814920_815367_+	hypothetical protein	NA	NA	NA	NA
WP_024986812.1\|815341_816568_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_168166623.1\|816614_818627_+	YWFCY domain-containing protein	NA	NA	NA	NA
WP_036617874.1\|818685_819300_-	tetracycline resistance element mobilization regulatory protein rteC	NA	NA	NA	NA
WP_036651041.1\|819406_820246_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_036617890.1\|820453_822769_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_024986810.1\|822819_823938_-	hypothetical protein	NA	NA	NA	NA
WP_036617869.1\|823959_824478_-	hypothetical protein	NA	NA	NA	NA
WP_024986808.1\|824521_824980_-	hypothetical protein	NA	NA	NA	NA
WP_024986807.1\|825053_825251_-	hypothetical protein	NA	NA	NA	NA
WP_024986806.1\|825269_825644_-	hypothetical protein	NA	NA	NA	NA
WP_024986804.1\|826186_826582_-	hypothetical protein	NA	NA	NA	NA
WP_036617867.1\|826619_827357_-	hypothetical protein	NA	NA	NA	NA
WP_036617859.1\|827381_827828_-	hypothetical protein	NA	NA	NA	NA
827802:827817	attL	NA	NA	NA	NA
WP_051635715.1\|827923_828508_-	hypothetical protein	NA	NA	NA	NA
WP_024986802.1\|828583_829309_-	hypothetical protein	NA	NA	NA	NA
WP_036617888.1\|829345_829813_-	hypothetical protein	NA	NA	NA	NA
WP_036617856.1\|829842_830640_-	hypothetical protein	NA	NA	NA	NA
WP_024986799.1\|830708_831161_-	hypothetical protein	NA	NA	NA	NA
WP_036653193.1\|831233_831881_-	hypothetical protein	NA	NA	NA	NA
WP_036617852.1\|831913_832669_-	DUF1911 domain-containing protein	NA	NA	NA	NA
WP_036617887.1\|832983_833409_-	hypothetical protein	NA	NA	NA	NA
WP_036617847.1\|833475_834093_-	ankyrin repeat domain-containing protein	A0A1L3IZC0	BeAn_58058_virus	1.2e-06	39.5
WP_051635714.1\|834198_834786_-	hypothetical protein	NA	NA	NA	NA
WP_036651038.1\|834812_835853_-	DUF1266 domain-containing protein	NA	NA	NA	NA
WP_036617843.1\|835891_836866_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_036617840.1\|836873_838451_-	ankyrin repeat domain-containing protein	A0A0M3ZJY4	Turkeypox_virus	7.7e-05	28.6
WP_051635713.1\|838440_838926_-	hypothetical protein	NA	NA	NA	NA
WP_036617838.1\|838938_839628_-	hypothetical protein	NA	NA	NA	NA
WP_051635712.1\|839945_844076_-\|integrase	integrase	NA	NA	NA	NA
WP_036617836.1\|844132_844555_-	hypothetical protein	NA	NA	NA	NA
WP_036617834.1\|844628_845060_-	hypothetical protein	NA	NA	NA	NA
WP_024986787.1\|845071_845698_-	hypothetical protein	NA	NA	NA	NA
WP_036617881.1\|845717_846080_-	hypothetical protein	NA	NA	NA	NA
WP_051635711.1\|846957_847350_-	DUF4377 domain-containing protein	NA	NA	NA	NA
WP_024986783.1\|847426_847729_-	hypothetical protein	NA	NA	NA	NA
WP_036617879.1\|847819_849166_-	BatD family protein	NA	NA	NA	NA
WP_024986781.1\|849702_850314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_024986780.1\|850532_851897_+	DUF3945 domain-containing protein	NA	NA	NA	NA
WP_036651035.1\|851927_854027_+	type IA DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	1.6e-13	21.6
WP_024986779.1\|854061_854529_+	DUF1896 domain-containing protein	NA	NA	NA	NA
WP_170106530.1\|854848_858025_+	N-6 DNA methylase	A0A248SL14	Klebsiella_phage	5.8e-60	28.2
WP_016278433.1\|858082_859294_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_130054668.1\|859290_860247_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_170105083.1\|860230_861280_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
866863:866878	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1325144 : 1375494

unidentified_phage(14.29%)

integrase

attL 1360080:1360094|attR 1379855:1379869

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065538044.1\|1325144_1326380_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.1e-27	30.4
WP_024988123.1\|1326391_1326763_+	hypothetical protein	NA	NA	NA	NA
WP_071807633.1\|1326851_1327148_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065540274.1\|1327144_1327429_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_100263463.1\|1327642_1328002_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065538043.1\|1328023_1328374_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_170105306.1\|1328404_1329979_+	DUF4099 domain-containing protein	NA	NA	NA	NA
WP_065538041.1\|1330038_1332129_+	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	3.6e-42	30.9
WP_065538040.1\|1332293_1332746_+	DUF1896 domain-containing protein	NA	NA	NA	NA
WP_170105308.1\|1332735_1336545_+	N-6 DNA methylase	A0A240F4T3	Ochrobactrum_phage	4.1e-36	34.4
WP_170105083.1\|1336602_1337652_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_130054668.1\|1337635_1338592_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_016278433.1\|1338588_1339800_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_170105310.1\|1341620_1343306_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.2e-134	49.3
WP_170106538.1\|1343307_1344588_+	DNA methylase	H2DE57	Erwinia_phage	3.2e-17	26.5
WP_065540271.1\|1344731_1345343_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_170105312.1\|1345468_1346575_+\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	3.1e-29	33.6
WP_121737179.1\|1346650_1347397_+	BatD family protein	NA	NA	NA	NA
WP_170105314.1\|1347516_1348050_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_016274264.1\|1348161_1348755_+	hypothetical protein	NA	NA	NA	NA
WP_007654000.1\|1348854_1349484_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_117912829.1\|1349556_1349901_+	hypothetical protein	NA	NA	NA	NA
WP_170106539.1\|1350009_1350645_+	hypothetical protein	NA	NA	NA	NA
WP_024986785.1\|1350724_1351117_+	DUF4377 domain-containing protein	NA	NA	NA	NA
WP_120466179.1\|1351203_1351845_+	hypothetical protein	NA	NA	NA	NA
WP_170105316.1\|1351951_1352755_+	hypothetical protein	NA	NA	NA	NA
WP_170105318.1\|1352826_1353258_+	hypothetical protein	NA	NA	NA	NA
WP_024986785.1\|1353336_1353729_+	DUF4377 domain-containing protein	NA	NA	NA	NA
WP_170105320.1\|1353803_1354268_+	hypothetical protein	NA	NA	NA	NA
WP_170105322.1\|1354305_1355076_+	hypothetical protein	NA	NA	NA	NA
WP_104369553.1\|1355135_1355855_+	hypothetical protein	NA	NA	NA	NA
WP_170105324.1\|1355873_1356383_+	DUF4375 domain-containing protein	NA	NA	NA	NA
WP_065538018.1\|1356413_1356788_+	hypothetical protein	NA	NA	NA	NA
WP_170105326.1\|1356864_1357731_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_170105328.1\|1357823_1360139_+	response regulator	B5LWN0	Feldmannia_species_virus	3.0e-21	25.7
1360080:1360094	attL	NA	NA	NA	NA
WP_170105330.1\|1360131_1361454_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_065538014.1\|1361735_1362149_+	dihydrofolate reductase family protein	NA	NA	NA	NA
WP_065538013.1\|1362359_1362977_+	RteC protein	NA	NA	NA	NA
WP_065538012.1\|1363108_1364557_+	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_065538011.1\|1364559_1364949_+	hypothetical protein	NA	NA	NA	NA
WP_065538010.1\|1365008_1367018_-	YWFCY domain-containing protein	NA	NA	NA	NA
WP_065538009.1\|1367048_1368299_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_121737100.1\|1368277_1368706_-	MobA protein	NA	NA	NA	NA
WP_170105332.1\|1369092_1369260_+	hypothetical protein	NA	NA	NA	NA
WP_065538007.1\|1369396_1370158_+	ParA family protein	NA	NA	NA	NA
WP_170106540.1\|1370244_1370583_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_157448008.1\|1370729_1371188_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_065538006.1\|1371184_1371916_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_008782546.1\|1372120_1372432_+	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_170105333.1\|1372442_1372775_+	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_005856073.1\|1374264_1375494_+\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
1379855:1379869	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1571035 : 1580080

Synechococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_121772608.1\|1571035_1572187_-	GDP-mannose 4,6-dehydratase	A0A0E3F1J3	Synechococcus_phage	9.6e-122	62.0
WP_121772607.1\|1572212_1573289_-	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	8.2e-83	47.0
WP_008772418.1\|1573314_1574190_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.6e-108	65.6
WP_121772606.1\|1574278_1574803_-	hypothetical protein	K4JW05	Caulobacter_phage	2.9e-17	37.6
WP_057328371.1\|1575052_1575754_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_057328372.1\|1575758_1577225_-	glucose-6-phosphate dehydrogenase	E3SJC5	Synechococcus_phage	2.0e-87	41.4
WP_057328373.1\|1577229_1578690_-	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.7e-38	27.2
WP_121772605.1\|1578700_1580080_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	2.6e-105	45.8

DBSCAN-SWA_5

2292395 : 2343502

Rhodobacter_phage(20.0%)

integrase

attL 2320241:2320264|attR 2348810:2348833

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005841877.1\|2292395_2293421_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_005924223.1\|2293423_2294410_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005841879.1\|2294393_2295650_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004304290.1\|2296010_2296319_+	hypothetical protein	A0A0K1LL53	Rhodobacter_phage	4.8e-12	44.6
WP_004291527.1\|2296352_2296742_-	hypothetical protein	NA	NA	NA	NA
WP_004291526.1\|2296806_2297334_-	hypothetical protein	NA	NA	NA	NA
WP_004291525.1\|2297330_2297834_-	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_004291524.1\|2297830_2298733_-	toprim domain-containing protein	NA	NA	NA	NA
WP_004291523.1\|2298740_2299316_-	conjugal transfer protein TraO	NA	NA	NA	NA
WP_004291522.1\|2299318_2300305_-	conjugative transposon protein TraN	NA	NA	NA	NA
WP_004291521.1\|2300339_2301692_-	conjugative transposon protein TraM	NA	NA	NA	NA
WP_004291518.1\|2302642_2303647_-	conjugative transposon protein TraJ	NA	NA	NA	NA
WP_004304283.1\|2303650_2304280_-	DUF4141 domain-containing protein	NA	NA	NA	NA
WP_004291516.1\|2304303_2304684_-	DUF3876 domain-containing protein	NA	NA	NA	NA
WP_008645841.1\|2306383_2306965_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_004309979.1\|2307120_2307531_+	hypothetical protein	NA	NA	NA	NA
WP_008645844.1\|2307813_2308011_-	hypothetical protein	NA	NA	NA	NA
WP_117543722.1\|2308324_2309044_-	hypothetical protein	NA	NA	NA	NA
WP_170105688.1\|2309048_2309969_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_004315361.1\|2309934_2310318_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_007656447.1\|2310463_2311429_-	toprim domain-containing protein	NA	NA	NA	NA
WP_007656440.1\|2311591_2312665_-	AAA family ATPase	NA	NA	NA	NA
WP_005856071.1\|2312654_2313008_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_102408426.1\|2313260_2313665_-	hypothetical protein	NA	NA	NA	NA
WP_117678389.1\|2313668_2314898_-\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_004291514.1\|2316387_2316720_-	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_002560983.1\|2316730_2317048_-	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_004304280.1\|2317249_2317978_-	hypothetical protein	NA	NA	NA	NA
WP_004291505.1\|2317994_2318348_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_004291503.1\|2318350_2318791_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_004291492.1\|2318793_2319843_-	ParA family protein	NA	NA	NA	NA
2320241:2320264	attL	NA	NA	NA	NA
WP_004291488.1\|2320264_2320693_+	hypothetical protein	NA	NA	NA	NA
WP_004291483.1\|2320671_2321919_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_004291482.1\|2321949_2323968_+	YWFCY domain-containing protein	NA	NA	NA	NA
WP_004291481.1\|2324099_2327354_-	NTPase	NA	NA	NA	NA
WP_004291480.1\|2327370_2328501_-	ATP-binding protein	NA	NA	NA	NA
WP_004304269.1\|2328802_2329408_-	hypothetical protein	NA	NA	NA	NA
WP_004291474.1\|2329646_2330069_-	dihydrofolate reductase family protein	NA	NA	NA	NA
WP_004291471.1\|2330348_2331671_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004291467.1\|2331663_2333982_-	response regulator	B5LWN0	Feldmannia_species_virus	1.6e-19	25.1
WP_004291466.1\|2333981_2335907_-	tetracycline resistance ribosomal protection protein Tet(Q)	A0A1S5SF82	Streptococcus_phage	4.5e-140	41.0
WP_141806856.1\|2336564_2337830_-	DNA methylase	H2DE57	Erwinia_phage	2.7e-16	25.7
WP_170105310.1\|2337831_2339517_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.2e-134	49.3
WP_016278433.1\|2341337_2342549_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_130054668.1\|2342545_2343502_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2348810:2348833	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2466288 : 2522188

unidentified_phage(16.67%)

tail,integrase,head

attL 2491844:2491859|attR 2525182:2525197

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_170105734.1\|2466288_2467524_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.4e-33	38.0
WP_135039418.1\|2467526_2467901_+	hypothetical protein	NA	NA	NA	NA
WP_162222466.1\|2467929_2468175_+	hypothetical protein	NA	NA	NA	NA
WP_024988615.1\|2468231_2468537_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_121767487.1\|2468589_2468862_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_170105736.1\|2469362_2469872_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_170105738.1\|2470152_2470575_+	hypothetical protein	NA	NA	NA	NA
WP_170105739.1\|2470827_2471649_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_170105740.1\|2471729_2472350_+	chloramphenicol acetyltransferase	NA	NA	NA	NA
WP_170105741.1\|2472551_2473889_+	MATE family efflux transporter	NA	NA	NA	NA
WP_170105742.1\|2473901_2474519_+	CatB-related O-acetyltransferase	A0A1V0SJ47	Klosneuvirus	1.4e-23	36.5
WP_170105743.1\|2474524_2476834_+	response regulator	B5LWN0	Feldmannia_species_virus	1.2e-19	24.2
WP_170105744.1\|2476826_2478149_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_170105745.1\|2479896_2483334_+	hypothetical protein	NA	NA	NA	NA
WP_158532980.1\|2483330_2483783_+	response regulator	NA	NA	NA	NA
WP_158532981.1\|2483779_2485012_+	hypothetical protein	NA	NA	NA	NA
WP_170105746.1\|2485191_2486190_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	2.9e-66	43.8
WP_005858424.1\|2487423_2487897_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_094582198.1\|2487997_2488804_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_005858428.1\|2488902_2489265_+	VOC family protein	NA	NA	NA	NA
WP_010801812.1\|2490701_2490917_+	hypothetical protein	NA	NA	NA	NA
WP_010801811.1\|2490928_2491150_+	hypothetical protein	NA	NA	NA	NA
WP_010801810.1\|2491163_2491580_+	hypothetical protein	NA	NA	NA	NA
WP_010801809.1\|2491576_2492869_+	PcfJ family protein	NA	NA	NA	NA
2491844:2491859	attL	NA	NA	NA	NA
WP_032934929.1\|2492893_2493151_+	hypothetical protein	NA	NA	NA	NA
WP_010801807.1\|2493171_2493402_+	DUF3873 domain-containing protein	NA	NA	NA	NA
WP_170104824.1\|2493398_2493539_+	hypothetical protein	NA	NA	NA	NA
WP_005841879.1\|2493675_2494932_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005924223.1\|2494915_2495902_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005841877.1\|2495904_2496930_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_010801805.1\|2497244_2497553_+	hypothetical protein	S5M7P0	Sinorhizobium_phage	3.1e-11	42.0
WP_016274252.1\|2497671_2497893_+	hypothetical protein	NA	NA	NA	NA
WP_010801803.1\|2497938_2498877_-	nucleotide-binding protein	NA	NA	NA	NA
WP_010801802.1\|2498873_2499911_-	hypothetical protein	NA	NA	NA	NA
WP_010801801.1\|2499977_2500508_-	hypothetical protein	NA	NA	NA	NA
WP_010801800.1\|2500504_2501008_-	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_010801799.1\|2501004_2501907_-	toprim domain-containing protein	NA	NA	NA	NA
WP_010801798.1\|2501914_2502490_-	conjugal transfer protein TraO	NA	NA	NA	NA
WP_010801797.1\|2502492_2503479_-	conjugative transposon protein TraN	NA	NA	NA	NA
WP_010801796.1\|2503516_2504869_-	conjugative transposon protein TraM	NA	NA	NA	NA
WP_010801795.1\|2504849_2505137_-	DUF3989 domain-containing protein	NA	NA	NA	NA
WP_004293887.1\|2505176_2505800_-	conjugative transposon protein TraK	NA	NA	NA	NA
WP_010801794.1\|2505832_2506837_-	conjugative transposon protein TraJ	NA	NA	NA	NA
WP_118468579.1\|2506840_2507470_-	DUF4141 domain-containing protein	NA	NA	NA	NA
WP_010801791.1\|2507493_2507874_-	DUF3876 domain-containing protein	NA	NA	NA	NA
WP_118468581.1\|2507912_2510417_-	TraG family conjugative transposon ATPase	NA	NA	NA	NA
WP_010801789.1\|2510413_2510746_-	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_005796934.1\|2510757_2511075_-	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_010801786.1\|2511276_2512005_-	hypothetical protein	NA	NA	NA	NA
WP_035457778.1\|2512021_2512375_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_010801784.1\|2512377_2512818_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_010801783.1\|2512820_2513870_-	ParA family protein	NA	NA	NA	NA
WP_010801782.1\|2514291_2514720_+	hypothetical protein	NA	NA	NA	NA
WP_010801781.1\|2514698_2515946_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_010801780.1\|2515976_2517986_+	YWFCY domain-containing protein	NA	NA	NA	NA
WP_010801779.1\|2518050_2518656_-	hypothetical protein	NA	NA	NA	NA
WP_010801778.1\|2518907_2519321_-	dihydrofolate reductase family protein	NA	NA	NA	NA
WP_107031784.1\|2519706_2520840_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	4.2e-05	25.3
WP_107031783.1\|2521135_2521507_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_107031760.1\|2521519_2522188_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
2525182:2525197	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2637630 : 2661640

Agrobacterium_phage(50.0%)

integrase

attL 2649848:2649861|attR 2666388:2666401

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104368505.1\|2637630_2638974_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_104368506.1\|2638977_2640309_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_010801754.1\|2640702_2640972_-	hypothetical protein	NA	NA	NA	NA
WP_010801753.1\|2640982_2641651_-	hypothetical protein	NA	NA	NA	NA
WP_010801752.1\|2641666_2642035_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_170106548.1\|2642220_2643501_-	DNA methylase	A0A223W0B5	Agrobacterium_phage	8.4e-18	26.5
WP_170105310.1\|2643502_2645188_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.2e-134	49.3
WP_170105083.1\|2647029_2648079_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_130054668.1\|2648062_2649019_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_016278433.1\|2649015_2650227_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2649848:2649861	attL	NA	NA	NA	NA
WP_170105764.1\|2650284_2654058_-	N-6 DNA methylase	A0A223W0B5	Agrobacterium_phage	9.7e-38	31.8
WP_010801748.1\|2654047_2654500_-	DUF1896 domain-containing protein	NA	NA	NA	NA
WP_170105765.1\|2654663_2656754_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	1.1e-43	31.2
WP_010801746.1\|2656816_2658382_-	DUF3945 domain-containing protein	NA	NA	NA	NA
WP_005802306.1\|2658402_2658753_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010801744.1\|2658756_2659113_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010801743.1\|2659315_2659615_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004310576.1\|2659646_2659952_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010801741.1\|2660030_2660393_-	hypothetical protein	NA	NA	NA	NA
WP_010801740.1\|2660404_2661640_-\|integrase	site-specific integrase	NA	NA	NA	NA
2666388:2666401	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2708451 : 2764874

unidentified_phage(28.57%)

transposase,integrase

attL 2707241:2707256|attR 2752346:2752361

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2707241:2707256	attL	NA	NA	NA	NA
WP_170105785.1\|2708451_2709678_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	8.0e-34	39.8
WP_036616098.1\|2710334_2711009_+	HAD family hydrolase	NA	NA	NA	NA
WP_041525636.1\|2711014_2711620_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_122246345.1\|2712030_2713605_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	4.3e-24	31.1
WP_170105786.1\|2713625_2715008_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_022193172.1\|2715020_2715959_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_005858717.1\|2715984_2716671_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012056204.1\|2716680_2717262_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_170105787.1\|2717368_2719693_+	TonB-dependent receptor	NA	NA	NA	NA
WP_170105788.1\|2719840_2721040_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2P1ELT3	Moumouvirus	2.1e-23	24.8
WP_034531524.1\|2721092_2722298_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_005868583.1\|2722297_2722897_-	sugar transferase	NA	NA	NA	NA
WP_170106549.1\|2722900_2724082_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_170105789.1\|2724117_2725278_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_008772570.1\|2725315_2726830_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_008772571.1\|2726854_2728294_-	O-antigen polysaccharide polymerase Wzy family protein	NA	NA	NA	NA
WP_005868573.1\|2728347_2729325_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	9.3e-09	31.9
WP_170105790.1\|2729596_2731168_-	AAA family ATPase	NA	NA	NA	NA
WP_005868570.1\|2731315_2731516_-	hypothetical protein	NA	NA	NA	NA
WP_008772573.1\|2731625_2732168_+	hypothetical protein	NA	NA	NA	NA
WP_170105791.1\|2732164_2733955_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_005868558.1\|2734040_2734235_+	DUF4248 domain-containing protein	NA	NA	NA	NA
WP_005868557.1\|2734336_2734762_+	peptidase M15	B5TR94	Bacteroides_phage	8.9e-33	48.5
WP_005858742.1\|2734882_2735374_+	DNA-binding protein	NA	NA	NA	NA
WP_022193190.1\|2735445_2735553_+	smalltalk protein	NA	NA	NA	NA
WP_170105792.1\|2735526_2737467_-	polysaccharide biosynthesis protein	A0A2K9V8D7	Bandra_megavirus	6.3e-25	28.4
WP_008772577.1\|2737483_2737864_-	hypothetical protein	NA	NA	NA	NA
WP_005858746.1\|2737875_2738940_-	hypothetical protein	NA	NA	NA	NA
WP_008772578.1\|2739445_2740378_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.9e-12	27.9
WP_005858748.1\|2740464_2740854_+	DUF2007 domain-containing protein	NA	NA	NA	NA
WP_170105793.1\|2740867_2741050_+	hypothetical protein	NA	NA	NA	NA
WP_022193193.1\|2741215_2742550_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_170105794.1\|2742738_2744169_+	phosphotransferase	NA	NA	NA	NA
WP_005858756.1\|2744165_2744903_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_170105795.1\|2744918_2745950_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_022193195.1\|2746030_2748985_-	response regulator	NA	NA	NA	NA
WP_009017035.1\|2749180_2750515_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_005858764.1\|2750613_2751171_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_170106550.1\|2751167_2751482_-	DUF4286 family protein	NA	NA	NA	NA
WP_140394005.1\|2751791_2753459_-	hypothetical protein	NA	NA	NA	NA
2752346:2752361	attR	NA	NA	NA	NA
WP_087346041.1\|2753483_2753684_-	DUF2589 domain-containing protein	NA	NA	NA	NA
WP_087346038.1\|2754022_2754493_-	hypothetical protein	NA	NA	NA	NA
WP_122143977.1\|2754582_2754924_+	hypothetical protein	NA	NA	NA	NA
WP_087346035.1\|2754916_2755900_+\|transposase	transposase	NA	NA	NA	NA
WP_087346030.1\|2756217_2756400_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_087880463.1\|2756494_2756890_+	pilus assembly protein HicB	NA	NA	NA	NA
WP_087346025.1\|2757074_2757296_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005868529.1\|2757581_2758319_-	acyltransferase	NA	NA	NA	NA
WP_004356044.1\|2759586_2759808_-	hypothetical protein	NA	NA	NA	NA
WP_007135033.1\|2760000_2760120_-	hypothetical protein	NA	NA	NA	NA
WP_005642186.1\|2760483_2761929_-\|transposase	IS4-like element ISBf8 family transposase	NA	NA	NA	NA
WP_005642186.1\|2762199_2763645_-\|transposase	IS4-like element ISBf8 family transposase	NA	NA	NA	NA
WP_170105796.1\|2763767_2764874_-\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

2874539 : 2944524

Bacillus_virus(18.18%)

protease,tRNA,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005867105.1\|2874539_2875772_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.4e-115	52.7
WP_005853931.1\|2875793_2876456_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	4.8e-41	46.7
WP_005853929.1\|2876645_2877998_-	trigger factor	NA	NA	NA	NA
WP_036618446.1\|2878141_2879029_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005853924.1\|2879023_2879776_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-22	28.5
WP_036618449.1\|2879860_2880976_-	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_008773770.1\|2881151_2881898_+	ABC transporter permease	NA	NA	NA	NA
WP_005853918.1\|2881900_2882671_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.7e-29	35.4
WP_005867099.1\|2882785_2884072_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.2e-106	49.0
WP_008778718.1\|2884321_2884516_-	hypothetical protein	NA	NA	NA	NA
WP_005867096.1\|2884546_2885005_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_005853911.1\|2885015_2886065_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_005867095.1\|2886077_2886785_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_005867094.1\|2886788_2887589_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_005853907.1\|2887585_2887825_-	DUF3098 domain-containing protein	NA	NA	NA	NA
WP_170105810.1\|2887852_2888731_-	cell division protein FtsX	NA	NA	NA	NA
WP_008773777.1\|2889202_2889355_-	hypothetical protein	NA	NA	NA	NA
WP_170105811.1\|2889532_2894878_-	Ig domain-containing protein	B8QTT6	Erwinia_phage	5.8e-12	54.1
WP_170106553.1\|2894898_2898450_-	hypothetical protein	NA	NA	NA	NA
WP_005862367.1\|2899222_2899600_+\|transposase	transposase	NA	NA	NA	NA
WP_095231420.1\|2899608_2900589_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	7.6e-19	28.2
WP_009017957.1\|2901144_2901783_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_009017956.1\|2901779_2902112_-	hypothetical protein	NA	NA	NA	NA
WP_170105812.1\|2902259_2903633_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_009017954.1\|2903893_2904352_+	hypothetical protein	NA	NA	NA	NA
WP_005867081.1\|2904453_2905950_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_009017953.1\|2906129_2907317_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_009017952.1\|2907325_2908213_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_005867076.1\|2908228_2908981_+	phosphate ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	4.0e-20	32.2
WP_170105813.1\|2909005_2909680_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_170105814.1\|2909720_2910935_+	hypothetical protein	NA	NA	NA	NA
WP_170105815.1\|2910995_2913434_-	glycoside hydrolase family 95 protein	NA	NA	NA	NA
WP_087346971.1\|2913587_2914397_-	hypothetical protein	NA	NA	NA	NA
WP_087346974.1\|2914417_2916115_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_057328127.1\|2916395_2918243_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.6e-57	34.4
WP_170105816.1\|2918372_2919215_+	hypothetical protein	NA	NA	NA	NA
WP_022192254.1\|2919218_2919689_+	hypothetical protein	NA	NA	NA	NA
WP_022192255.1\|2919692_2920769_+	radical SAM protein	NA	NA	NA	NA
WP_011966845.1\|2920826_2922602_+	DUF4091 domain-containing protein	NA	NA	NA	NA
WP_170105817.1\|2922787_2925139_+	beta-glucosidase	NA	NA	NA	NA
WP_121735780.1\|2925199_2925793_-	hypothetical protein	NA	NA	NA	NA
WP_008773795.1\|2925977_2926229_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_008773796.1\|2926255_2926555_+	nucleotidyltransferase	NA	NA	NA	NA
WP_170105818.1\|2926547_2926889_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_008773798.1\|2926972_2927671_-	hypothetical protein	NA	NA	NA	NA
WP_170105819.1\|2928296_2929148_+	hemagglutinin	NA	NA	NA	NA
WP_008773800.1\|2929263_2929473_+	hypothetical protein	NA	NA	NA	NA
WP_087346995.1\|2929654_2930968_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_008773803.1\|2930992_2931883_-	GTPase Era	NA	NA	NA	NA
WP_008779906.1\|2931866_2932871_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_005634607.1\|2932974_2933160_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_005867041.1\|2933172_2933763_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_057328117.1\|2933851_2935009_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_005867039.1\|2941124_2941661_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_170106554.1\|2941751_2942507_+	hypothetical protein	NA	NA	NA	NA
WP_170105820.1\|2942526_2944035_+\|tail	phage tail sheath family protein	A0A142EZL9	Stenotrophomonas_phage	1.5e-10	31.1
WP_005861441.1\|2944071_2944524_+\|tail	phage tail protein	A0A059XEM3	uncultured_phage	1.8e-23	45.1

DBSCAN-SWA_10

4431250 : 4516084

Bacillus_phage(20.0%)

transposase,tRNA,integrase

attL 4423441:4423456|attR 4522535:4522550

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4423441:4423456	attL	NA	NA	NA	NA
WP_005867488.1\|4431250_4432303_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_005859552.1\|4432452_4432965_+	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_170106229.1\|4433053_4433863_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_170106230.1\|4434013_4434856_+	anti-sigma factor	NA	NA	NA	NA
WP_170106231.1\|4434870_4437519_+	TonB-dependent receptor	NA	NA	NA	NA
WP_009275358.1\|4437522_4438560_+	DUF4249 domain-containing protein	NA	NA	NA	NA
WP_011967328.1\|4441395_4442511_+	DUF4249 domain-containing protein	NA	NA	NA	NA
WP_036610131.1\|4442463_4443282_-	hypothetical protein	NA	NA	NA	NA
WP_008772825.1\|4443383_4443935_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_170106583.1\|4443921_4445295_+	PorT family protein	NA	NA	NA	NA
WP_036650615.1\|4445315_4446578_+	hypothetical protein	NA	NA	NA	NA
WP_170106584.1\|4449118_4449694_+	response regulator	NA	NA	NA	NA
WP_170106232.1\|4449712_4450690_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_008772819.1\|4450686_4451019_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_170106233.1\|4451334_4454034_-	S9 family peptidase	NA	NA	NA	NA
WP_170106234.1\|4454854_4457809_+	hypothetical protein	NA	NA	NA	NA
WP_170106235.1\|4458953_4459727_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_008779191.1\|4459745_4460315_-	N-acetyltransferase	A0A1P8CWJ6	Bacillus_phage	3.5e-08	28.6
WP_170106236.1\|4460746_4463143_-	TonB-dependent receptor	NA	NA	NA	NA
WP_170106237.1\|4463305_4467415_+	response regulator	W8CYF6	Bacillus_phage	7.6e-28	37.1
WP_170106238.1\|4467353_4469741_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_008772813.1\|4469954_4470728_+	NAD(+) diphosphatase	NA	NA	NA	NA
WP_008772812.1\|4470698_4471304_-	DUF4858 domain-containing protein	NA	NA	NA	NA
WP_170106239.1\|4471520_4472885_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_128577343.1\|4472881_4473889_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	1.1e-07	31.5
WP_170106240.1\|4473883_4476532_-	response regulator	A0A1V0SGX0	Hokovirus	1.4e-35	29.4
WP_057319049.1\|4476664_4479058_-	TonB-dependent receptor	NA	NA	NA	NA
WP_087879907.1\|4479128_4479791_+\|tRNA	tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD	NA	NA	NA	NA
WP_005867529.1\|4479851_4480169_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	6.2e-15	38.9
WP_008772806.1\|4480256_4484060_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	4.7e-181	33.4
WP_170106241.1\|4484866_4488058_+	hypothetical protein	NA	NA	NA	NA
WP_008777864.1\|4488541_4489174_+	PorT family protein	NA	NA	NA	NA
WP_005859486.1\|4489369_4489825_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_005859484.1\|4489830_4490217_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_005859482.1\|4490356_4491193_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_005867537.1\|4491337_4492327_+	elongation factor Ts	NA	NA	NA	NA
WP_005859478.1\|4492482_4493676_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_005859476.1\|4493757_4494975_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.0e-97	45.2
WP_009275387.1\|4494999_4496925_-	YjgP/YjgQ family permease	NA	NA	NA	NA
WP_005859472.1\|4497027_4497411_-	hypothetical protein	NA	NA	NA	NA
WP_005859470.1\|4498402_4499335_-	FimB/Mfa2 family fimbrial subunit	NA	NA	NA	NA
WP_087342336.1\|4499899_4501801_+	response regulator	NA	NA	NA	NA
WP_087342094.1\|4502256_4503591_+	fimbrial protein	NA	NA	NA	NA
WP_005862367.1\|4504012_4504390_+\|transposase	transposase	NA	NA	NA	NA
WP_170106534.1\|4504398_4505379_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	9.9e-19	28.2
WP_087342339.1\|4505993_4507361_-	fimbrial protein	NA	NA	NA	NA
WP_170106585.1\|4507836_4508196_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_170106242.1\|4508298_4509528_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.1e-21	29.7
WP_170106243.1\|4509541_4510762_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.7e-13	26.5
WP_170106244.1\|4510783_4511158_+	hypothetical protein	NA	NA	NA	NA
WP_170106245.1\|4511169_4511352_-	hypothetical protein	NA	NA	NA	NA
WP_008761211.1\|4511485_4512328_+	hypothetical protein	NA	NA	NA	NA
WP_170106246.1\|4512329_4512473_+	hypothetical protein	NA	NA	NA	NA
WP_148356471.1\|4512620_4512926_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_170106247.1\|4512979_4513291_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_170106248.1\|4513700_4514168_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_170106249.1\|4514448_4514874_+	hypothetical protein	NA	NA	NA	NA
WP_170106250.1\|4514875_4516084_+\|integrase	site-specific integrase	NA	NA	NA	NA
4522535:4522550	attR	NA	NA	NA	NA

DBSCAN-SWA_11

5051911 : 5061309

Organic_Lake_phycodnavirus(33.33%)

integrase

attL 5057398:5057436|attR 5061223:5061261

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087375728.1\|5051911_5054617_+	DEAD/DEAH box helicase family protein	A0A2I7SC38	Paenibacillus_phage	1.6e-13	23.8
WP_087375727.1\|5054621_5056040_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	4.5e-28	27.0
WP_087375726.1\|5056043_5057174_+	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	1.7e-25	27.6
WP_122132814.1\|5057220_5058627_+	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	1.7e-08	25.1
5057398:5057436	attL	NA	NA	NA	NA
WP_087375798.1\|5058657_5059461_-\|integrase	tyrosine-type recombinase/integrase	A0A0H4TI16	Erysipelothrix_phage	6.9e-10	23.8
WP_087375797.1\|5059551_5059995_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_170106392.1\|5059989_5061309_-	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	4.0e-15	41.6
5061223:5061261	attR	NA	NA	NA	NA

DBSCAN-SWA_12

5103438 : 5116338

Croceibacter_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_170106595.1\|5103438_5104977_-	hypothetical protein	Q6J7X1	Actinoplanes_phage	9.4e-32	26.4
WP_170106432.1\|5105130_5105709_-	hypothetical protein	NA	NA	NA	NA
WP_170106433.1\|5105705_5105984_-	spermidine synthase	I6S756	Croceibacter_phage	1.4e-23	57.1
WP_170106434.1\|5105986_5107540_-	site-specific DNA-methyltransferase	I6R9Y1	Croceibacter_phage	1.0e-86	40.1
WP_170106435.1\|5107643_5108009_-	hypothetical protein	A0A0P0IKL1	Acinetobacter_phage	3.3e-20	42.1
WP_170106436.1\|5108109_5108484_-	hypothetical protein	NA	NA	NA	NA
WP_170106437.1\|5108559_5108934_-	hypothetical protein	NA	NA	NA	NA
WP_170106438.1\|5109087_5109375_-	DUF4884 domain-containing protein	Q333I1	Escherichia_virus	1.6e-06	42.0
WP_170106439.1\|5109371_5109527_-	hypothetical protein	NA	NA	NA	NA
WP_170106440.1\|5109539_5109854_-	hypothetical protein	NA	NA	NA	NA
WP_170106441.1\|5109861_5110116_-	hypothetical protein	NA	NA	NA	NA
WP_170106442.1\|5110112_5110346_-	hypothetical protein	NA	NA	NA	NA
WP_120177924.1\|5110333_5110519_-	hypothetical protein	NA	NA	NA	NA
WP_170106443.1\|5110523_5110808_-	hypothetical protein	NA	NA	NA	NA
WP_170106444.1\|5110827_5112648_-	toprim domain-containing protein	A0A218ML96	uncultured_virus	3.9e-109	40.4
WP_170106445.1\|5112644_5113616_-	DUF4373 domain-containing protein	H7BVC7	unidentified_phage	4.0e-36	55.6
WP_170106446.1\|5113628_5115005_-	DEAD/DEAH box helicase family protein	A0A0S2MWK8	Cellulophaga_phage	9.3e-55	34.2
WP_170106447.1\|5115167_5115341_-	hypothetical protein	NA	NA	NA	NA
WP_170106448.1\|5115396_5116338_-	endonuclease	A0A222ZFK1	Arthrobacter_phage	1.9e-22	28.6

Anti-CRISPR protein detection

Acr_ID: NZ_CP051672.1|WP_120470796.1|1398472_1398883_-|PcfK-like-protein

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Acr_ID: NZ_CP051672.1|WP_004291533.1|2289888_2290305_+|hypothetical-protein

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Acr_ID: NZ_CP051672.1|WP_010801810.1|2491163_2491580_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP051672.1|WP_120470796.1|1398472_1398883_-|PcfK-like-protein

1398472_1398883_-

136 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5673758865248227	1	1.0

NZ_CP051672.1|WP_004291533.1|2289888_2290305_+|hypothetical-protein

2289888_2290305_+

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5571428571428572	0.9855072463768116	0.9929078014184397

HTH_ARAC

Identity	Hit_domain_coverage
NA	NA

NZ_CP051672.1|WP_010801810.1|2491163_2491580_+|hypothetical-protein

2491163_2491580_+

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5714285714285714	0.9855072463768116	0.9929078014184397

HTH_ASNC

Identity	Hit_domain_coverage
NA	NA

2466288-2522188

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP051672

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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