CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040613	Campylobacter sp. CFSAN093246 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	1	1	2	0
NZ_CP040614	Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence	1 crisprs	NA	0	2	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040613_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040613_1

1495881-1495982

TypeII

Consensus_repeat	Method
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder

1 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP040613_1

>merge|NZ_CP040613|1|1495881-1495982|CRISPRCasFinder
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGGACAAAAGAAAAGAAATTAGAAAATTTAATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP040613|1|1|1495881-1495982|CRISPRCasFinder
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGGACAAAAGAAAAGAAATTAGAAAATTTA
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040613.1\|WP_168977244.1\|1487096_1489901_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239153
NZ_CP040613.1\|WP_002779488.1\|1493898_1494120_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP040613.1\|WP_002851264.1\|1486458_1487100_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP040613.1\|WP_100626311.1\|1497437_1500392_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP040613.1\|WP_002851546.1\|1506266_1506716_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP040613.1\|WP_002780988.1\|1496126_1496558_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP040613.1\|WP_100621812.1\|1505164_1506202_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP040613.1\|WP_002851320.1\|1502060_1503050_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP040613.1\|WP_002851193.1\|1496550_1497441_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP040613.1\|WP_002934784.1\|1494120_1494567_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP040613.1\|WP_002874968.1\|1492355_1493897_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP040613.1\|WP_002887719.1\|1494570_1495761_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP040613.1\|WP_002851537.1\|1489900_1490092_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP040613.1\|WP_002872138.1\|1503110_1503716_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP040613.1\|WP_002872140.1\|1504436_1505168_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NZ_CP040613.1\|WP_032583972.1\|1485529_1486462_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP040613.1\|WP_002872139.1\|1503712_1504462_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP040613.1\|WP_002855462.1\|1506845_1508066_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NZ_CP040613.1\|WP_002868029.1\|1491083_1492232_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP040613.1\|WP_002851502.1\|1490066_1490780_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916

Protein	Function_ID	Function_description	E-value
NZ_CP040613.1\|WP_168977244.1\|1487096_1489901_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP040613.1\|WP_002779488.1\|1493898_1494120_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP040613.1\|WP_002851264.1\|1486458_1487100_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP040613.1\|WP_100626311.1\|1497437_1500392_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP040613.1\|WP_002851546.1\|1506266_1506716_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP040613.1\|WP_002780988.1\|1496126_1496558_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.96465e-59
NZ_CP040613.1\|WP_100621812.1\|1505164_1506202_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.95512e-34
NZ_CP040613.1\|WP_002851320.1\|1502060_1503050_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP040613.1\|WP_002851193.1\|1496550_1497441_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.41783e-121
NZ_CP040613.1\|WP_002934784.1\|1494120_1494567_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.7419e-44
NZ_CP040613.1\|WP_002874968.1\|1492355_1493897_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.83609e-119
NZ_CP040613.1\|WP_002887719.1\|1494570_1495761_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	7.93699e-140
NZ_CP040613.1\|WP_002851537.1\|1489900_1490092_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP040613.1\|WP_002872138.1\|1503110_1503716_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	8.91047e-68
NZ_CP040613.1\|WP_002872140.1\|1504436_1505168_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	4.70824e-101
NZ_CP040613.1\|WP_032583972.1\|1485529_1486462_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	1.70014e-89
NZ_CP040613.1\|WP_002872139.1\|1503712_1504462_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	7.0307e-91
NZ_CP040613.1\|WP_002855462.1\|1506845_1508066_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP040613.1\|WP_002868029.1\|1491083_1492232_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP040613.1\|WP_002851502.1\|1490066_1490780_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716

>NZ_CP040613.1|WP_002887719.1|1494570_1495761_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGITPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENICIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDIIFMP
>NZ_CP040613.1|WP_002934784.1|1494120_1494567_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDISKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP040613.1|WP_002779488.1|1493898_1494120_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP040613.1|WP_002874968.1|1492355_1493897_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFKIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRAEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP040613.1|WP_002868029.1|1491083_1492232_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNVKNELQMIREFSYKDYSLRN
>NZ_CP040613.1|WP_002851502.1|1490066_1490780_-|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP040613.1|WP_002851537.1|1489900_1490092_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP040613.1|WP_168977244.1|1487096_1489901_-|molybdopterin-dependent-oxidoreductase
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPQLAKEQDIKAGDMIWVHSPESTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP040613.1|WP_002851264.1|1486458_1487100_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP040613.1|WP_032583972.1|1485529_1486462_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTHIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP040613.1|WP_002780988.1|1496126_1496558_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP040613.1|WP_002851193.1|1496550_1497441_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQASLSSALFNAFARHKIILLTCDETHSINGIFTPFLGHFQSAKIAKEQINVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP040613.1|WP_100626311.1|1497437_1500392_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGDHSLSQDDLNEIVKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP040613.1|WP_002851320.1|1502060_1503050_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NZ_CP040613.1|WP_002872138.1|1503110_1503716_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLDFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKTRLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP040613.1|WP_002872139.1|1503712_1504462_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAEIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NZ_CP040613.1|WP_002872140.1|1504436_1505168_+|glucosaminidase-domain-containing-protein
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP040613.1|WP_100621812.1|1505164_1506202_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSANIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP040613.1|WP_002851546.1|1506266_1506716_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP040613.1|WP_002855462.1|1506845_1508066_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP040613.1	703973-704002	0	1.0

1. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to position: 703973-704002, mismatch: 0, identity: 1.0

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
tggacaaaagaaaagaaattagaaaattta	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP014284	Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence	278392-278421	5	0.833
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP032609	Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence	72233-72262	5	0.833
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP015353	Bacillus thuringiensis strain MYBT18246 plasmid p120510, complete sequence	33803-33832	5	0.833
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	146142-146171	5	0.833
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP010579	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence	19618-19647	5	0.833
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MT647606	Pelagibacter phage Mosig EXVC030M, partial genome	22110-22139	6	0.8
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	271447-271476	6	0.8
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	145080-145109	6	0.8
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	179702-179731	6	0.8
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	110230-110259	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP031074	Bacillus mycoides strain BPN401 plasmid pl41, complete sequence	34561-34590	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP044414	Lactobacillus sp. JM1 plasmid unnamed2, complete sequence	13792-13821	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP040501	Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence	31146-31175	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP008839	Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence	23347-23376	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250021	Prevotella phage Lak-B2, complete genome	326203-326232	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN693145	Marine virus AFVG_25M56, complete genome	13787-13816	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250024	Prevotella phage Lak-B5, complete genome	320225-320254	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250028	Prevotella phage Lak-B9, complete genome	325115-325144	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250023	Prevotella phage Lak-B4, complete genome	327829-327858	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250023	Prevotella phage Lak-B4, complete genome	515835-515864	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	AP014319	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C158, * SEQUENCING IN PROGRESS *	8977-9006	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN693807	Marine virus AFVG_250M375, complete genome	47999-48028	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250025	Prevotella phage Lak-B6, complete genome	323417-323446	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250022	Prevotella phage Lak-B3, complete genome	323432-323461	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250027	Prevotella phage Lak-B8, complete genome	326526-326555	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MH616896	Microviridae sp. isolate ctbg046, complete genome	3015-3044	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250026	Prevotella phage Lak-B7, complete genome	325579-325608	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250020	Prevotella phage Lak-B1, complete genome	325098-325127	7	0.767
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	110011-110040	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK504446	Lactobacillus phage SAC12B, complete genome	10128-10157	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	AP014366	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C63, * SEQUENCING IN PROGRESS *	12652-12681	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MH319744	Marine virus AG-345-E15 Ga0172270_14 genomic sequence	6993-7022	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	361346-361375	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP026693	Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence	113478-113507	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	218561-218590	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_019749	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence	80712-80741	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN655998	Escherichia phage E26, complete genome	155370-155399	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN693341	Marine virus AFVG_25M304, complete genome	13776-13805	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	79745-79774	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MT764208	Escherichia phage JEP8, complete genome	69526-69555	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_009821	Enterobacteria phage Phi1, complete genome	155371-155400	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN693607	Marine virus AFVG_25M305, complete genome	14160-14189	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MF327006	Shigella phage Sf20, complete genome	91193-91222	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_025425	Enterobacteria phage GEC-3S complete genome	154550-154579	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN709127	Escherichia virus Ec_Makalu_002, complete genome	155782-155811	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK327947	Escherichia phage vB_EcoM_G5211, complete genome	155708-155737	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_041936	Escherichia phage ECD7, complete genome	157101-157130	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	AY343333	Enterobacteria phage RB49, complete genome	155443-155472	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK327935	Escherichia phage vB_EcoM_G2494, complete genome	159503-159532	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN693415	Marine virus AFVG_25M102, complete genome	23371-23400	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK250016	Prevotella phage Lak-A1, complete genome	169859-169888	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MK064565	Sulfolobales Beppu rod-shaped virus 1 clone D, complete genome	12200-12229	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN850574	Escherichia phage kaaroe, complete genome	115563-115592	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN850615	Escherichia phage kvi, complete genome	92885-92914	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	MN882349	Escherichia virus Ec_Makalu_003, complete genome	154073-154102	8	0.733
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP004875	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB95, complete sequence	58058-58087	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_017202	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence	116960-116989	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP011357	Bacillus thuringiensis strain YC-10 plasmid pYC20, complete sequence	72228-72257	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP015155	Bacillus thuringiensis strain Bc601 plasmid pBTBC5, complete sequence	2866-2895	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP013058	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-3, complete sequence	17112-17141	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP007614	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB95, complete sequence	21873-21902	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP004868	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB94, complete sequence	72126-72155	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	CP020756	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-17, complete sequence	85737-85766	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_020393	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-107, complete sequence	92068-92097	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NZ_CP021063	Bacillus thuringiensis strain ATCC 10792 plasmid poh2, complete sequence	52514-52543	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	NC_020239	Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pHT77, complete sequence	66700-66729	9	0.7
NZ_CP040613_1	1.1\|1495917\|30\|NZ_CP040613\|CRISPRCasFinder	1495917-1495946	30	AP013376	Uncultured Mediterranean phage uvMED DNA, complete genome, group G13, isolate: uvMED-CGR-U-MedDCM-OCT-S34-C52	31416-31445	9	0.7

1. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP014284 (Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence) position: , mismatch: 5, identity: 0.833

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
tggacaaaagaaaaggcattagaagcctta	Protospacer
***************. *******. .***

2. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP032609 (Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence) position: , mismatch: 5, identity: 0.833

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
tggacaaaagaaaaggcattagaagcctta	Protospacer
***************. *******. .***

3. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP015353 (Bacillus thuringiensis strain MYBT18246 plasmid p120510, complete sequence) position: , mismatch: 5, identity: 0.833

-tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ataga-aaaagaaaagcaattagaaaataca	Protospacer
 *.** ********** *********** .*

4. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 5, identity: 0.833

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
tggacaaaagaaaaggcattagaagcatta	Protospacer
***************. *******.  ***

5. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP010579 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence) position: , mismatch: 5, identity: 0.833

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
tggacaaaagaaaaggcattagaagcatta	Protospacer
***************. *******.  ***

6. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MT647606 (Pelagibacter phage Mosig EXVC030M, partial genome) position: , mismatch: 6, identity: 0.8

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
cagatgaaagagaagaaattagaaaaatta	Protospacer
..**..*****.************** ***

7. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 6, identity: 0.8

-tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ataga-gaaagaaaagcaattagaaaataca	Protospacer
 *.** .********* *********** .*

8. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 6, identity: 0.8

-tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ataga-gaaagaaaaaaaattagaaaataca	Protospacer
 *.** .********.************ .*

9. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 6, identity: 0.8

-tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ataga-gaaagaaaagcaattagaaaataca	Protospacer
 *.** .********* *********** .*

10. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
tggacaaaagaaaaaatattagaagcactt	Protospacer
**************.* *******.  .*

11. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP031074 (Bacillus mycoides strain BPN401 plasmid pl41, complete sequence) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aaaacgcaagaaatgaaattagaaaatttt	Protospacer
 ..**. ****** ***************

12. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP044414 (Lactobacillus sp. JM1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
actaaagaagaacaaaaattagaaaattta	Protospacer
   * *.***** *.***************

13. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP040501 (Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
actaaagaagaacaaaaattagaaaattta	Protospacer
   * *.***** *.***************

14. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP008839 (Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
actaaagaagaacaaaaattagaaaattta	Protospacer
   * *.***** *.***************

15. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

16. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN693145 (Marine virus AFVG_25M56, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ctgatgaaagcaaagcaattagaaaatttc	Protospacer
. **..**** **** *************

17. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

18. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

19. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

20. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aaaacaaaagaaaagaaaataaaaaaacta	Protospacer
 ..*************** **.**** .**

21. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to AP014319 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C158, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aatacaacagaaaagaaatcagaaaaatca	Protospacer
 . **** ***********.****** *.*

22. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN693807 (Marine virus AFVG_250M375, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
tctaaaaaagaaaaacaattagaaaattat	Protospacer
*  * *********. ************

23. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

24. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

25. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

26. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MH616896 (Microviridae sp. isolate ctbg046, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
cacaaaaaaggaaagaaagtagaaaattaa	Protospacer
.. * *****.******* ********* *

27. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

28. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 7, identity: 0.767

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aagagtcaagaaaagaaattaaaaaaatta	Protospacer
 .**   **************.**** ***

29. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ctttcaaaagaaaaaaaattagaaaataag	Protospacer
.   **********.************  .

30. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggtgttgtagaaaagaaattagaaaatttg	Protospacer
 * .. . *********************.

31. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to AP014366 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C63, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
attacaaaagaaaacaaattagaaagatat	Protospacer
   *********** **********. *

32. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MH319744 (Marine virus AG-345-E15 Ga0172270_14 genomic sequence) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aaagaactagaaaagaaagtagaaaattta	Protospacer
 ... *  ********** ***********

33. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
tttcaaaaagaaaaaaaattagaaaagtat	Protospacer
*    *********.*********** *

34. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP026693 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
caggatcaagaagagcaattagaaaattta	Protospacer
..*.   *****.** **************

35. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
taaaaaagagaaaagaaattagaaaagagt	Protospacer
*..* **.******************

36. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_019749 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
agtaaaaaagaaaataaattagaaaaaaat	Protospacer
 * * ********* ***********

37. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

38. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN693341 (Marine virus AFVG_25M304, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aaaactaaacaaaagaaattagaaaaaatt	Protospacer
 ..** *** ****************  *

39. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

40. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

41. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

42. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN693607 (Marine virus AFVG_25M305, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aaaactaaacaaaagaaattagaaaaaatt	Protospacer
 ..** *** ****************  *

43. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

44. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_025425 (Enterobacteria phage GEC-3S complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

45. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

46. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK327947 (Escherichia phage vB_EcoM_G5211, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

47. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

48. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

49. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

50. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN693415 (Marine virus AFVG_25M102, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
atcaaaaaagaaaagaacttagagaattgt	Protospacer
   * ************ *****.****

51. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
aaaaatcaagaaaagaaattaaaaaaatta	Protospacer
 ..*   **************.**** ***

52. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MK064565 (Sulfolobales Beppu rod-shaped virus 1 clone D, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
gggacaacaaaaaagaaattagaagcgctt	Protospacer
 ****** *.**************.  .*

53. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN850574 (Escherichia phage kaaroe, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

54. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN850615 (Escherichia phage kvi, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

55. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to MN882349 (Escherichia virus Ec_Makalu_003, complete genome) position: , mismatch: 8, identity: 0.733

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ccatcaagagaaaagaaattagagaatatc	Protospacer
. . ***.***************.*** *

56. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP004875 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB95, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

57. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_017202 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

58. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP011357 (Bacillus thuringiensis strain YC-10 plasmid pYC20, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

59. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP015155 (Bacillus thuringiensis strain Bc601 plasmid pBTBC5, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

60. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP013058 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-3, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

61. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP007614 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB95, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

62. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP004868 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB94, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

63. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to CP020756 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-17, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

64. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_020393 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-107, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

65. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NZ_CP021063 (Bacillus thuringiensis strain ATCC 10792 plasmid poh2, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

66. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to NC_020239 (Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pHT77, complete sequence) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
ggagagcaagtaaagaaattagaaaattgg	Protospacer
 *.. . *** ***************** .

67. spacer 1.1|1495917|30|NZ_CP040613|CRISPRCasFinder matches to AP013376 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G13, isolate: uvMED-CGR-U-MedDCM-OCT-S34-C52) position: , mismatch: 9, identity: 0.7

tggacaaaagaaaagaaattagaaaattta	CRISPR spacer
caagacaaagagaagaaattagaaaacttg	Protospacer
....  *****.**************.**.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1082739 : 1142263

Campylobacter_phage(44.74%)

tRNA,transposase,tail,capsid,terminase,plate,integrase

attL 1081864:1081881|attR 1121257:1121274

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1081864:1081881	attL	NA	NA	NA	NA
WP_100608275.1\|1082739_1084815_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_052806498.1\|1084985_1085909_+	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	5.1e-09	25.0
WP_002795448.1\|1085911_1086103_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002824157.1\|1086099_1086285_+	hypothetical protein	NA	NA	NA	NA
WP_100608273.1\|1086418_1086757_+	hypothetical protein	NA	NA	NA	NA
WP_024266021.1\|1086952_1087438_+	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	1.2e-17	32.7
WP_168977231.1\|1087509_1087782_+	hypothetical protein	NA	NA	NA	NA
WP_002938698.1\|1087778_1088210_+	hypothetical protein	NA	NA	NA	NA
WP_052797554.1\|1088220_1088628_+	hypothetical protein	A0A2R3ZY25	Campylobacter_phage	5.9e-34	54.1
WP_057031537.1\|1088736_1089699_+	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|1089695_1089965_+	hypothetical protein	NA	NA	NA	NA
WP_057031538.1\|1089964_1090657_+	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|1090653_1091103_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002784526.1\|1091149_1091425_+	hypothetical protein	NA	NA	NA	NA
WP_002876312.1\|1091416_1092088_-	endonuclease	NA	NA	NA	NA
WP_002784523.1\|1092181_1092466_+	DNA-binding protein	NA	NA	NA	NA
WP_002852060.1\|1092462_1093440_-\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002784520.1\|1093433_1093625_-\|tail	tail protein	NA	NA	NA	NA
WP_052777709.1\|1093617_1093992_-\|tail	phage tail protein	NA	NA	NA	NA
WP_100608272.1\|1094117_1095356_-	hypothetical protein	M4M9M5	Vibrio_phage	1.9e-19	29.8
WP_004297439.1\|1095357_1096728_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	5.8e-17	26.6
WP_052803392.1\|1096737_1098408_-\|terminase	phage terminase large subunit	A0A0A1IW02	Pseudomonas_phage	3.9e-92	41.4
WP_002803360.1\|1098407_1099007_-	DUF1804 family protein	NA	NA	NA	NA
WP_002855185.1\|1098999_1099458_-	DUF1320 family protein	NA	NA	NA	NA
WP_002784507.1\|1099572_1100550_-\|capsid	major capsid protein	R9TRN2	Rhizobium_phage	3.3e-06	23.4
WP_038401719.1\|1100552_1101080_-	hypothetical protein	NA	NA	NA	NA
WP_002873730.1\|1101082_1101898_-	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002873731.1\|1101899_1102334_-	hypothetical protein	NA	NA	NA	NA
WP_057033856.1\|1102480_1102870_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	6.5e-22	47.1
WP_100616499.1\|1102880_1103222_+	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|1103218_1103467_+	hypothetical protein	NA	NA	NA	NA
WP_002784492.1\|1103578_1103893_+	hypothetical protein	NA	NA	NA	NA
WP_100608270.1\|1103892_1104525_+\|plate	phage baseplate assembly protein V	A0A0F7LDY9	Escherichia_phage	6.0e-09	31.4
WP_002795238.1\|1104533_1104725_+	hypothetical protein	NA	NA	NA	NA
WP_002795239.1\|1104721_1105012_+	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_100616497.1\|1105008_1106175_+\|plate	baseplate J/gp47 family protein	Q8H9N3	Vibrio_phage	3.9e-14	24.6
WP_100608269.1\|1106272_1106893_+\|tail	phage tail protein I	A7YH02	Campylobacter_phage	9.6e-60	97.5
WP_100625241.1\|1106892_1107924_+\|tail	phage tail protein	A7YG81	Campylobacter_phage	1.7e-186	98.3
WP_057036462.1\|1107948_1108455_+	DUF4376 domain-containing protein	A7YGM4	Campylobacter_phage	9.8e-87	99.4
WP_043012791.1\|1108451_1108823_+	DUF1353 domain-containing protein	A7YG79	Campylobacter_phage	2.0e-68	100.0
WP_165433153.1\|1108923_1109931_+	hypothetical protein	A7YG78	Campylobacter_phage	3.2e-190	98.8
WP_039332501.1\|1109949_1111143_+\|tail	phage tail sheath family protein	A7YGF4	Campylobacter_phage	5.0e-198	100.0
WP_002865376.1\|1111169_1111679_+\|tail	tail protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_002873740.1\|1111831_1112071_+\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	9.4e-24	93.8
WP_002865378.1\|1112182_1112488_-	hypothetical protein	A7YGX3	Campylobacter_phage	2.7e-39	100.0
WP_043012784.1\|1112529_1114746_+\|tail	phage tail tape measure protein	A7YG87	Campylobacter_phage	0.0e+00	100.0
WP_002865380.1\|1114749_1115238_+	phage virion morphogenesis protein	A7YGE7	Campylobacter_phage	2.0e-89	100.0
WP_052777351.1\|1115439_1116255_+	DNA adenine methylase	A7YGS0	Campylobacter_phage	3.1e-151	99.6
WP_002865289.1\|1116282_1116570_-	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
WP_002843339.1\|1116649_1116844_-	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865000.1\|1116853_1117174_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_052791646.1\|1117254_1117884_-	LexA family transcriptional regulator	A7YGK7	Campylobacter_phage	1.3e-59	98.2
WP_002868601.1\|1118519_1119332_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002868600.1\|1119390_1120350_+	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA
WP_023890815.1\|1120330_1120891_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.1e-17	38.1
WP_002896702.1\|1120887_1122273_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A0K0KVL9	Prochlorococcus_phage	2.5e-23	45.4
1121257:1121274	attR	NA	NA	NA	NA
WP_052854610.1\|1122265_1123219_-	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	2.9e-23	35.3
WP_052854612.1\|1123219_1123780_-	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_002852762.1\|1123860_1124163_+	cytochrome c	NA	NA	NA	NA
WP_002852798.1\|1124185_1124392_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA
WP_085524822.1\|1124388_1126746_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.4e-66	28.8
WP_002852852.1\|1126854_1128153_+	transcription termination factor Rho	NA	NA	NA	NA
WP_002873531.1\|1128156_1129686_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	1.9e-45	37.8
WP_168940544.1\|1129682_1129871_-	DUF2165 family protein	NA	NA	NA	NA
WP_032603038.1\|1129889_1130012_-	DUF2165 family protein	NA	NA	NA	NA
WP_139847559.1\|1130025_1130175_-	DUF2165 family protein	NA	NA	NA	NA
WP_100626272.1\|1130276_1132376_-	copper-translocating P-type ATPase CopA	A0A218MNH6	uncultured_virus	3.7e-63	30.2
WP_100621745.1\|1132375_1132570_-	heavy metal transport/detoxification protein	NA	NA	NA	NA
WP_002852858.1\|1132559_1133510_-	cation transporter	A0A1V0SED0	Indivirus	8.5e-07	24.8
WP_002831611.1\|1133585_1133849_-	zf-TFIIB domain-containing protein	NA	NA	NA	NA
WP_002831613.1\|1133918_1134413_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_002914489.1\|1134409_1135186_-	threonine/serine exporter ThrE family protein	NA	NA	NA	NA
WP_002899812.1\|1135252_1136179_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_002831619.1\|1136175_1136778_-	DedA family protein	NA	NA	NA	NA
WP_002822505.1\|1136858_1137086_-	hypothetical protein	NA	NA	NA	NA
WP_002879618.1\|1137096_1138533_-	DUF3373 family protein	NA	NA	NA	NA
WP_002822502.1\|1138695_1139178_-	peptidylprolyl isomerase	A0A1V0S9I2	Catovirus	8.6e-16	42.9
WP_002914488.1\|1139187_1139895_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002777281.1\|1140003_1140345_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_002780599.1\|1140344_1140653_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_002879616.1\|1140670_1142263_-\|tRNA	arginine--tRNA ligase	L7RDT2	Acanthamoeba_polyphaga_moumouvirus	5.4e-06	23.0

DBSCAN-SWA_2

1398855 : 1405491

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002857908.1\|1398855_1399521_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
WP_002857991.1\|1399508_1400114_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
WP_002858413.1\|1400101_1401121_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
WP_002857889.1\|1401140_1401992_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_002858299.1\|1402010_1402952_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
WP_002864205.1\|1402975_1404016_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.7e-69	44.4
WP_002852387.1\|1404015_1404942_-	hypothetical protein	NA	NA	NA	NA
WP_002858190.1\|1404945_1405491_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040614

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040614_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040614_1

42860-43007

Orphan

Consensus_repeat	Method
ACTACAACATAACTACAACTTGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040614_1

>merge|NZ_CP040614|1|42860-43007|CRISPRCasFinder
AATACAACTTTACTTCAAGTATAGTTTATGTTTATGTAAATTTTTATTTCAACTTAACTACACTTTTACTACAACATAACTACAACTTGAGTGCAAAAAAACGCTACTTGATAAACTGCATTTTATTTTCAACTTAACTACAACTTAA

>NZ_CP040614|1|1|42860-43007|CRISPRCasFinder
AATACAACTTTACTTCAAGTATA	GTTTATGTTTATGTAAATTTTT
ATTTCAACTTAACTACACTTTTA	CTACAACATAACTACAACTTGAGTGCAAAAAAACGCTACTTGATAAACTGCATTTTA
TTTTCAACTTAACTACAACTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040614.1\|WP_002790365.1\|50380_50695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_002819291.1\|23923_24607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_100626300.1\|43832_44225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_100626303.1\|51403_51634_-\|mobilization-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_100626298.1\|29105_33035_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_002779695.1\|51863_52802_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274043
NZ_CP040614.1\|WP_100626301.1\|45402_46860_-\|DNA-methylase	unknown	unknown	gnl\|CDD\|176454
NZ_CP040614.1\|WP_052781598.1\|23434_23842_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_002788998.1\|50706_50850_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_100626302.1\|49418_49832_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_052786867.1\|48610_48967_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_100626354.1\|24606_25989_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188121
NZ_CP040614.1\|WP_002779560.1\|28477_28837_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_002779683.1\|48055_48190_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040614.1\|WP_100626299.1\|33053_34322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_052781567.1\|51163_51391_-\|WGR-domain-containing-protein	unknown	unknown	gnl\|CDD\|153425
NZ_CP040614.1\|WP_052781571.1\|40061_40964_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_052781572.1\|38816_39242_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040614.1\|WP_072231458.1\|27995_28484_+\|lysozyme	unknown	unknown	gnl\|CDD\|381599
NZ_CP040614.1\|WP_002790984.1\|34344_35148_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040614.1\|WP_100626301.1\|45402_46860_-\|DNA-methylase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	2.51662e-75
NZ_CP040614.1\|WP_052781567.1\|51163_51391_-\|WGR-domain-containing-protein	gnl\|CDD\|153425	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.	1.86305e-09
NZ_CP040614.1\|WP_002779695.1\|51863_52802_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	7.66238e-26
NZ_CP040614.1\|WP_002779683.1\|48055_48190_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.52583e-05
NZ_CP040614.1\|WP_072231458.1\|27995_28484_+\|lysozyme	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	5.80395e-50
NZ_CP040614.1\|WP_100626354.1\|24606_25989_+\|hypothetical-protein	gnl\|CDD\|188121	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase.	0.00256693

>NZ_CP040614.1|WP_052781571.1|40061_40964_-|hypothetical-protein
MKLHDIVCNELRINRSELGNILGVSKTTIDAWSDPSRMSKTTEIALKQMLENHRLKEIFEAQANAYRKFLKYANENSSIEISDTHRTLIDKIRYILKEYNLNSLTAAKKLKISFEELDRIMLLVKYPNFDFLSHFIESFFISEKWLLEDFGKPFSRNFIESKNMESFTTEAKKYEQIYIIHCNDNSEYTKIIVKNNKDLFSIFDQDFYIGNFIMENQEQKGLFELYNFYNENQRNTTCYIFDKEDYQNIISGDYFIKNCLKKGKISYLLEDLFDLNSNSNFYQNCKFYKECVDILNKFIN
>NZ_CP040614.1|WP_052781572.1|38816_39242_-|hypothetical-protein
MDKAVNMKLKITFIVFLVLILTNIGILFISKNEIFTKTLIGLIATAFILYYALAWIKTIKSIKKDSSKSGVKNLFIGILKLPYELVKVVLKIIKKTFSFFFGLIDAWVDDTVKSRKTLDEFNSNEQLNGKSLDLSNMSMLK
>NZ_CP040614.1|WP_002790984.1|34344_35148_+|hypothetical-protein
MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQELTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEAFYINVLINSDTHYKNPLLQYAITQKQEQENIVYALKNNENLNASFANLNALKLALEEKNFYLNFIDLNSKESLLSFYNQIISNNHFRNYFYIKNNQFFIKKDIKNKIVFHNINSSSIISNYLRLLNDFNTLSKIELINILESLSLYNLSTLMQTIQTIQSKNEYNSKDFDKDSIFLSNMIMNVRLK
>NZ_CP040614.1|WP_100626299.1|33053_34322_+|hypothetical-protein
MSETYEIYTPNGLALDVEKDTNKILFKENVKPTGKYTQEYSKALFEAHNIKQNSPYKDYKPQYLDPEFHTGEKSTLLEFKEWQSIYLKDPIKGNIAPWTKAEKAYYKSLKTKRERYKYLAIRSGLRSVVIDIPYDAYANVDEKGNLINEEYAYIYDEVSSRRGTLKSYSFFNEWELSALLLGNIKASPTAAVGFKARQQQALFLQAQLGDKNAFKSLGLAVLCSNSFLTGQHWNKLRAKMIYDLHDHHYESLLDEFGMLPFLDEIIGVDWVIDLNRYKFALDEEGRIIWALYDDIEKGKLKDPRDIDSTSESRKEFDHYMDGYKNGMATRFDVDIRNERDERSAKLTMDTLVLSAKLAALTPPQGYPNAPRYYSPERLEIIYKRHKLDKLLDPRIPAIYRYNFPQELRAKILAYAKEHNIKE
>NZ_CP040614.1|WP_100626298.1|29105_33035_+|hypothetical-protein
MFISSKTELIQTIKNLTINNKEVKQIDFIYPNFSILHAILKNIDFHQRKMLSKNQILTMEILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEICTKVYLEDLEEIQDKKQGKDFNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIENIDPDDISSEKFDDFKKKVLEKIGNVIESDFFKNSISPTLKNTYEKFINELLEHIKKLAEEKEYEKIKIILSAIAGVAIATVVAVLTGGAGLAILAADLFSLMGSASEYYEFAQRDYGTLLTPLAAFLATRCAMFIHYINSRLLSCVLIINKKEIIDLSGFGLYLGSDESNIASNLAYKITLSEEIKSIENIFSEIFLNPEQKDKGYKNTPNDSKSSNLPAFISTQKLSNLYLKNNAILKNLQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKMSKNYLIISNIPNKYNAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMPQDENEPYILQLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKEKLAISENEPMIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEAKESIIEKEKKIAHQYLTFLKKEFFEKSDKSSFGNYSLMECLFISFVLYQAKLIFPNINLDLKKYGGSNFVYIKYLEETYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYSFVENDNSITIDDFFNELSKDLDTTNTLDKKIIKLKQMYHLDEQKCIKEFMNLDEETQRAFVAWMDIEKQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFTAQMLWDFNFLKTIEYVIQACIKINKEGFKEFFKEQLGIFAPPKKNSIYHIHIKSNLIIKARLQQIEKELIHTKIQMILAQEIKSNLIIQKNTSGLNPFITKIKEYFNEKQIKIYWSDKYMKQLFIYSNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVTGEFVGIFLNYLFPTNFKALQEQYESIVYQLYTFKDDSPLAVIRDHFVTYPFAINSKFISFDLKKIFYGIDLCTGVFDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRNATALEDIKEQKYIIDDYTFYFKELKSLELKKCTIYQLPCNHPLFKEFRNKEKQISAFKKDEDSPIHAYNEALQILQDFANGLYNTSKDKTGRYIEDKNKTRRLLEKLNIIGQNNLKAMYMGINENEESLKNKDNEEGNEEDIESVTKNKQSQKLPPNFIGRLATTIIIEDGLYMG
>NZ_CP040614.1|WP_002779560.1|28477_28837_+|hypothetical-protein
MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLCPEGNITCDKVVYVGVNKNNGKYIVLNGKSISDVNMNFKGYVFKNGIYEYNIFNNFLYISKNKQIIQEYRLKLCEK
>NZ_CP040614.1|WP_072231458.1|27995_28484_+|lysozyme
MTHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSYVKGATIGYGHLIGQNEWDLYKNGITLQEADKLFKSDLLPFENAVKNSINSSLAQNEFDALVILCFNIGIDNFKNSSVAKIINGEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAEYKLYIQGGYEKW
>NZ_CP040614.1|WP_100626354.1|24606_25989_+|hypothetical-protein
MHEKQAKYMKLYKYARMCWASYSTGLNEGMFGKEDKKWGLKNQTQYYTKQDIEMLKENNINSPTYFQAITQSSMLVFDTYNISFDEDNANEFINRYEVLAFIQDDDTSFSATLFKDTKDNELILAFRGIDIFQFSFSFWDSIKAGAQIFRSQVPLEYYLQLLKFYDDKVRHFLGNDKLIVTGHCFGGYLAQLFVLSFPQSVKALYTYNAMGVYENEYTKYTNYIGNKFDDGIEILGYNFNIFDANLKNIKLIPITQELKNNIILKDNSIAFKEDTPYEVKELFPNNIKSQKNTTQLYLQIQNAPLDFSVIFKELDYNSVYTLTPIQARGFKNLIENLLKGNEEFSKLLNAEIYKIYTIDLDDSEEIFQKFGTHIKPNEIIALKLDYFKLQLNFKFDGSKKSAESVFGFAKKATILKWILVLISIEDICEELLKQSRIKDDEPSLHFFYGWEEFFRDFQGY
>NZ_CP040614.1|WP_002819291.1|23923_24607_+|hypothetical-protein
MKNKLYHYFNNKENSNDLKKQFFKNIKQALFYLFLVILTFYNITYLTLLTFFPFPFFGWISLFILSTIWVYLFLKLVFYLVFKIFNIDKKIKKFYLFLPYPLFMLLWFGYSFVPLEWQSSFKEFESLCEKADSKAVIYDAKNIISLWDNYKKINKDILFNITEQYVDFRIKKIIILWYYKDGKNTIQEYKIDNTYSWLDIGMFAKYKRKMICYDIQKYKELQEKRGY
>NZ_CP040614.1|WP_052781598.1|23434_23842_+|hypothetical-protein
MSKNIKTQEAKLDLITKFLDYANCADASYAMLQYVFKGVIKYKNDNGNELEKKVDTQRLGDKHNNQNSTYARAIQARFEQNKIVKIEPKYCISLINTCFDSKEITLDNDISRVGLNDTLSKRIIDFINRFKLLKH
>NZ_CP040614.1|WP_100626300.1|43832_44225_-|hypothetical-protein
MHKAIETWFTKIYLNKIIHKEKNDKLFVNITSCLAFILSIYGKTDENKSKMTPAVMAYIKKTKNTFIAKLKRVKNHESIIDLQAKYPKLDIVSAYQFLTLKDKFKITKSEIQDFETLIDILSKNAQKSKK
>NZ_CP040614.1|WP_100626301.1|45402_46860_-|DNA-methylase
MDNTQKYAVIDLKSFYASVECILRKLDPLNTNLVVADESRTEKTICLAVSPALRSYNISGRLRLFELIQKVKTINYERLKIAKYFSAKSYNHLELINNPNLELDYIVAKPRMSTYIDYSPKIYSIYLKYFDPKDIHIYSIDEVFIDLTPYIKHYKLSAGKLIENILFEILKTTQITATAGIGTNLYLAKIAMDILAKKQNTNKDGLCIGYLDEMLYRRKLWQHTPINDFWRIGKGYATKLKSIGINNMGDLARYSLNNEDKLYQIFGVNAELLIDHAWGFESFTMQAIKEYKSKHISKVMAKVLPKPYSFKKARDMLKEIVDHMVLELIEQNLTCNQIVLDVQYDKESLEKVQSYNGPMSKDSYGRSIPKNAHSTINLDYHTSSLEAICNKGLELFDLIVNADFLIRKISLTLNNVVKNDTIKKIKEPSLFTDLEQKENKNFIKEEKLQKARLAIVHKYGKKSIFKASSLENGLKINSQIGGHNA
>NZ_CP040614.1|WP_002779683.1|48055_48190_+|helix-turn-helix-transcriptional-regulator
MTEEKENIIKEVCKELNITQTELGRQLDVSASTINTWASGKILT
>NZ_CP040614.1|WP_052786867.1|48610_48967_+|hypothetical-protein
MESIFSDTNQAKKLIQAFEEFANDRATTQRLNFGNLKQEAIEQIRNELVSKDLFQSETKGLEAEIKRMESSLQSEIKLSISSLKQQGIYWLIGACVVSIATIISSVWAIMDFMVKHLK
>NZ_CP040614.1|WP_100626302.1|49418_49832_-|hypothetical-protein
MKNYYISEGVKALFSIYFKDQTEENFIKALNEFTKESQINSQEIKDKSFREFKEAISKLPTIDLLNTRFDKLEYSIGTKLDKPEDSVCAKLDKLENKLDSFKREVRTYVIILAALMFILQPTIFDLILSIFKSFLRQ
>NZ_CP040614.1|WP_002790365.1|50380_50695_+|hypothetical-protein
MQKNIQDYIIDVHSCDPHSSNAYKQDLFDVLNEDFTKEYEFIDSPTLDDIVKHKQSDEVFKVFYKKDDKIRLLRVSNMQALNRFDKLKGAMTKIILDSGFKPDK
>NZ_CP040614.1|WP_002788998.1|50706_50850_+|hypothetical-protein
MCKDREYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGLEED
>NZ_CP040614.1|WP_052781567.1|51163_51391_-|WGR-domain-containing-protein
MNNVLLHRITEKGNIRYYSIEIIATLFEEYIVERVYGNVRFKSCTGRKNNVFPSFNEAQIFFERLKKQKMKKGYA
>NZ_CP040614.1|WP_100626303.1|51403_51634_-|mobilization-protein
MEKNTINNENIQKNEILIPKRVLFDEKTLKMIEMMTPTYKDEISNTNKENEKINQMIKLAIEKMFKNDFLNKINNF
>NZ_CP040614.1|WP_002779695.1|51863_52802_+|tyrosine-type-recombinase/integrase
MKLKNTTISEDLERWIEAYLKHIQALSYSNNTFLLYRRILLEFVEYSLDYQDEMQINDIKTTFLVNFLNYLENNSKNGNKLSKKTKITYLRVLTSFFSFISDNNDDLFVFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKAALLNN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	14053-14074	0	1.0
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP040614	Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence	42883-42904	0	1.0
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	15242-15263	0	1.0
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	32891-32912	0	1.0
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	4024-4045	0	1.0
NZ_CP040614_1	1.2\|42928\|57\|NZ_CP040614\|CRISPRCasFinder	42928-42984	57	NZ_CP044176	Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence	2525-2581	0	1.0
NZ_CP040614_1	1.2\|42928\|57\|NZ_CP040614\|CRISPRCasFinder	42928-42984	57	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	3944-4000	0	1.0
NZ_CP040614_1	1.2\|42928\|57\|NZ_CP040614\|CRISPRCasFinder	42928-42984	57	NZ_CP040614	Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence	42928-42984	0	1.0
NZ_CP040614_1	1.2\|42928\|57\|NZ_CP040614\|CRISPRCasFinder	42928-42984	57	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	32936-32992	0	1.0
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	63610-63631	2	0.909
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	105840-105861	2	0.909
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	46695-46716	2	0.909
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	108501-108522	2	0.909
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP044176	Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence	2605-2626	2	0.909
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP017417	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence	20413-20434	2	0.909
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	139100-139121	2	0.909
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	2420-2441	2	0.909
NZ_CP040614_1	1.1\|42883\|22\|NZ_CP040614\|CRISPRCasFinder	42883-42904	22	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	64039-64060	3	0.864

1. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 0, identity: 1.0

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaaattttt	Protospacer
**********************

2. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP040614 (Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaaattttt	Protospacer
**********************

3. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaaattttt	Protospacer
**********************

4. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 0, identity: 1.0

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaaattttt	Protospacer
**********************

5. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 0, identity: 1.0

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaaattttt	Protospacer
**********************

6. spacer 1.2|42928|57|NZ_CP040614|CRISPRCasFinder matches to NZ_CP044176 (Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence) position: , mismatch: 0, identity: 1.0

ctacaacataactacaacttgagtgcaaaaaaacgctacttgataaactgcatttta	CRISPR spacer
ctacaacataactacaacttgagtgcaaaaaaacgctacttgataaactgcatttta	Protospacer
*********************************************************

7. spacer 1.2|42928|57|NZ_CP040614|CRISPRCasFinder matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 0, identity: 1.0

ctacaacataactacaacttgagtgcaaaaaaacgctacttgataaactgcatttta	CRISPR spacer
ctacaacataactacaacttgagtgcaaaaaaacgctacttgataaactgcatttta	Protospacer
*********************************************************

8. spacer 1.2|42928|57|NZ_CP040614|CRISPRCasFinder matches to NZ_CP040614 (Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ctacaacataactacaacttgagtgcaaaaaaacgctacttgataaactgcatttta	CRISPR spacer
ctacaacataactacaacttgagtgcaaaaaaacgctacttgataaactgcatttta	Protospacer
*********************************************************

9. spacer 1.2|42928|57|NZ_CP040614|CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 0, identity: 1.0

ctacaacataactacaacttgagtgcaaaaaaacgctacttgataaactgcatttta	CRISPR spacer
ctacaacataactacaacttgagtgcaaaaaaacgctacttgataaactgcatttta	Protospacer
*********************************************************

10. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.909

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaattttta	Protospacer
**************** ****

11. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 2, identity: 0.909

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaattttta	Protospacer
**************** ****

12. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaattttta	Protospacer
**************** ****

13. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 2, identity: 0.909

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaattttta	Protospacer
**************** ****

14. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP044176 (Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence) position: , mismatch: 2, identity: 0.909

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaattttta	Protospacer
**************** ****

15. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP017417 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence) position: , mismatch: 2, identity: 0.909

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaattttta	Protospacer
**************** ****

16. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 2, identity: 0.909

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaattttta	Protospacer
**************** ****

17. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 2, identity: 0.909

gtttatgtttatgtaaattttt	CRISPR spacer
gtttatgtttatgtaattttta	Protospacer
**************** ****

18. spacer 1.1|42883|22|NZ_CP040614|CRISPRCasFinder matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 3, identity: 0.864

gtttatgtttatgtaaattttt	CRISPR spacer
atttatgtttatgtaaatttaa	Protospacer
.*******************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040613

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040614

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection