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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040612 Campylobacter sp. CFSAN093241 chromosome, complete genome 2 crisprs DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3 0 8 1 0

Results visualization

1. NZ_CP040612
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040612_1 1464039-1464272 TypeII NA
3 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040612_2 1490601-1490713 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040612_1 1.1|1464075|30|NZ_CP040612|CRT 1464075-1464104 30 NZ_CP019561 Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence 122239-122268 6 0.8
NZ_CP040612_1 1.1|1464075|30|NZ_CP040612|CRT 1464075-1464104 30 NZ_CP051433 Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence 5669-5698 6 0.8
NZ_CP040612_1 1.1|1464075|30|NZ_CP040612|CRT 1464075-1464104 30 NZ_CP024158 Escherichia coli strain 14EC047 plasmid p14EC047c, complete sequence 23984-24013 6 0.8
NZ_CP040612_1 1.1|1464075|30|NZ_CP040612|CRT 1464075-1464104 30 CP043759 Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence 68069-68098 6 0.8
NZ_CP040612_1 1.1|1464075|30|NZ_CP040612|CRT 1464075-1464104 30 NZ_CP024129 Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence 48532-48561 6 0.8
NZ_CP040612_1 1.1|1464075|30|NZ_CP040612|CRT 1464075-1464104 30 NZ_CP024133 Escherichia coli strain 14EC007 plasmid p14EC007b, complete sequence 22895-22924 6 0.8
NZ_CP040612_1 1.1|1464075|30|NZ_CP040612|CRT 1464075-1464104 30 NZ_CP024137 Escherichia coli strain 14EC017 plasmid p14EC017c, complete sequence 9887-9916 6 0.8
NZ_CP040612_1 1.3|1464207|30|NZ_CP040612|CRT 1464207-1464236 30 NZ_CP046714 Nostoc sp. ATCC 53789 plasmid pNsp_k, complete sequence 7687-7716 6 0.8
NZ_CP040612_1 1.4|1464076|30|NZ_CP040612|PILER-CR 1464076-1464105 30 NZ_CP019561 Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence 122239-122268 6 0.8
NZ_CP040612_1 1.4|1464076|30|NZ_CP040612|PILER-CR 1464076-1464105 30 NZ_CP051433 Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence 5669-5698 6 0.8
NZ_CP040612_1 1.4|1464076|30|NZ_CP040612|PILER-CR 1464076-1464105 30 NZ_CP024158 Escherichia coli strain 14EC047 plasmid p14EC047c, complete sequence 23984-24013 6 0.8
NZ_CP040612_1 1.4|1464076|30|NZ_CP040612|PILER-CR 1464076-1464105 30 CP043759 Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence 68069-68098 6 0.8
NZ_CP040612_1 1.4|1464076|30|NZ_CP040612|PILER-CR 1464076-1464105 30 NZ_CP024129 Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence 48532-48561 6 0.8
NZ_CP040612_1 1.4|1464076|30|NZ_CP040612|PILER-CR 1464076-1464105 30 NZ_CP024133 Escherichia coli strain 14EC007 plasmid p14EC007b, complete sequence 22895-22924 6 0.8
NZ_CP040612_1 1.4|1464076|30|NZ_CP040612|PILER-CR 1464076-1464105 30 NZ_CP024137 Escherichia coli strain 14EC017 plasmid p14EC017c, complete sequence 9887-9916 6 0.8
NZ_CP040612_1 1.6|1464208|30|NZ_CP040612|PILER-CR 1464208-1464237 30 NZ_CP046714 Nostoc sp. ATCC 53789 plasmid pNsp_k, complete sequence 7687-7716 6 0.8
NZ_CP040612_1 1.3|1464207|30|NZ_CP040612|CRT 1464207-1464236 30 KX119200 Helicobacter phage FrMEG235U, complete genome 2736-2765 7 0.767
NZ_CP040612_1 1.3|1464207|30|NZ_CP040612|CRT 1464207-1464236 30 KX119201 Helicobacter phage FrANT170U, complete genome 2736-2765 7 0.767
NZ_CP040612_1 1.6|1464208|30|NZ_CP040612|PILER-CR 1464208-1464237 30 KX119200 Helicobacter phage FrMEG235U, complete genome 2736-2765 7 0.767
NZ_CP040612_1 1.6|1464208|30|NZ_CP040612|PILER-CR 1464208-1464237 30 KX119201 Helicobacter phage FrANT170U, complete genome 2736-2765 7 0.767
NZ_CP040612_1 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder 1464075-1464105 31 NZ_CP019561 Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence 122239-122269 7 0.774
NZ_CP040612_1 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder 1464075-1464105 31 NZ_CP051433 Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence 5669-5699 7 0.774
NZ_CP040612_1 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder 1464075-1464105 31 NZ_CP024158 Escherichia coli strain 14EC047 plasmid p14EC047c, complete sequence 23984-24014 7 0.774
NZ_CP040612_1 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder 1464075-1464105 31 CP043759 Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence 68068-68098 7 0.774
NZ_CP040612_1 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder 1464075-1464105 31 NZ_CP024129 Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence 48532-48562 7 0.774
NZ_CP040612_1 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder 1464075-1464105 31 NZ_CP024133 Escherichia coli strain 14EC007 plasmid p14EC007b, complete sequence 22895-22925 7 0.774
NZ_CP040612_1 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder 1464075-1464105 31 NZ_CP024137 Escherichia coli strain 14EC017 plasmid p14EC017c, complete sequence 9886-9916 7 0.774
NZ_CP040612_1 1.9|1464207|31|NZ_CP040612|CRISPRCasFinder 1464207-1464237 31 NZ_CP046714 Nostoc sp. ATCC 53789 plasmid pNsp_k, complete sequence 7686-7716 7 0.774
NZ_CP040612_1 1.2|1464141|30|NZ_CP040612|CRT 1464141-1464170 30 JQ340088 Halocynthia phage JM-2012, complete genome 9348-9377 8 0.733
NZ_CP040612_1 1.5|1464142|30|NZ_CP040612|PILER-CR 1464142-1464171 30 JQ340088 Halocynthia phage JM-2012, complete genome 9348-9377 8 0.733

1. spacer 1.1|1464075|30|NZ_CP040612|CRT matches to NZ_CP019561 (Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

2. spacer 1.1|1464075|30|NZ_CP040612|CRT matches to NZ_CP051433 (Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

3. spacer 1.1|1464075|30|NZ_CP040612|CRT matches to NZ_CP024158 (Escherichia coli strain 14EC047 plasmid p14EC047c, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

4. spacer 1.1|1464075|30|NZ_CP040612|CRT matches to CP043759 (Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

5. spacer 1.1|1464075|30|NZ_CP040612|CRT matches to NZ_CP024129 (Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

6. spacer 1.1|1464075|30|NZ_CP040612|CRT matches to NZ_CP024133 (Escherichia coli strain 14EC007 plasmid p14EC007b, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

7. spacer 1.1|1464075|30|NZ_CP040612|CRT matches to NZ_CP024137 (Escherichia coli strain 14EC017 plasmid p14EC017c, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

8. spacer 1.3|1464207|30|NZ_CP040612|CRT matches to NZ_CP046714 (Nostoc sp. ATCC 53789 plasmid pNsp_k, complete sequence) position: , mismatch: 6, identity: 0.8

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tatttgaacctttaaaatcaagaaatccgt	Protospacer
********* .************** .  *

9. spacer 1.4|1464076|30|NZ_CP040612|PILER-CR matches to NZ_CP019561 (Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

10. spacer 1.4|1464076|30|NZ_CP040612|PILER-CR matches to NZ_CP051433 (Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

11. spacer 1.4|1464076|30|NZ_CP040612|PILER-CR matches to NZ_CP024158 (Escherichia coli strain 14EC047 plasmid p14EC047c, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

12. spacer 1.4|1464076|30|NZ_CP040612|PILER-CR matches to CP043759 (Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

13. spacer 1.4|1464076|30|NZ_CP040612|PILER-CR matches to NZ_CP024129 (Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

14. spacer 1.4|1464076|30|NZ_CP040612|PILER-CR matches to NZ_CP024133 (Escherichia coli strain 14EC007 plasmid p14EC007b, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

15. spacer 1.4|1464076|30|NZ_CP040612|PILER-CR matches to NZ_CP024137 (Escherichia coli strain 14EC017 plasmid p14EC017c, complete sequence) position: , mismatch: 6, identity: 0.8

taatggtgttgttaattggaatgcaaaagg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagg	Protospacer
**..  *********.*******.******

16. spacer 1.6|1464208|30|NZ_CP040612|PILER-CR matches to NZ_CP046714 (Nostoc sp. ATCC 53789 plasmid pNsp_k, complete sequence) position: , mismatch: 6, identity: 0.8

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tatttgaacctttaaaatcaagaaatccgt	Protospacer
********* .************** .  *

17. spacer 1.3|1464207|30|NZ_CP040612|CRT matches to KX119200 (Helicobacter phage FrMEG235U, complete genome) position: , mismatch: 7, identity: 0.767

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tttttgaacgcttaaaagcaagattttgat	Protospacer
* *************** *****   *. *

18. spacer 1.3|1464207|30|NZ_CP040612|CRT matches to KX119201 (Helicobacter phage FrANT170U, complete genome) position: , mismatch: 7, identity: 0.767

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tttttgaacgcttaaaagcaagattttgat	Protospacer
* *************** *****   *. *

19. spacer 1.6|1464208|30|NZ_CP040612|PILER-CR matches to KX119200 (Helicobacter phage FrMEG235U, complete genome) position: , mismatch: 7, identity: 0.767

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tttttgaacgcttaaaagcaagattttgat	Protospacer
* *************** *****   *. *

20. spacer 1.6|1464208|30|NZ_CP040612|PILER-CR matches to KX119201 (Helicobacter phage FrANT170U, complete genome) position: , mismatch: 7, identity: 0.767

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tttttgaacgcttaaaagcaagattttgat	Protospacer
* *************** *****   *. *

21. spacer 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder matches to NZ_CP019561 (Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence) position: , mismatch: 7, identity: 0.774

taatggtgttgttaattggaatgcaaaaggg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagga	Protospacer
**..  *********.*******.******.

22. spacer 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder matches to NZ_CP051433 (Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence) position: , mismatch: 7, identity: 0.774

taatggtgttgttaattggaatgcaaaaggg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagga	Protospacer
**..  *********.*******.******.

23. spacer 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder matches to NZ_CP024158 (Escherichia coli strain 14EC047 plasmid p14EC047c, complete sequence) position: , mismatch: 7, identity: 0.774

taatggtgttgttaattggaatgcaaaaggg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagga	Protospacer
**..  *********.*******.******.

24. spacer 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder matches to CP043759 (Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence) position: , mismatch: 7, identity: 0.774

taatggtgttgttaattggaatgcaaaaggg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagga	Protospacer
**..  *********.*******.******.

25. spacer 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder matches to NZ_CP024129 (Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence) position: , mismatch: 7, identity: 0.774

taatggtgttgttaattggaatgcaaaaggg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagga	Protospacer
**..  *********.*******.******.

26. spacer 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder matches to NZ_CP024133 (Escherichia coli strain 14EC007 plasmid p14EC007b, complete sequence) position: , mismatch: 7, identity: 0.774

taatggtgttgttaattggaatgcaaaaggg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagga	Protospacer
**..  *********.*******.******.

27. spacer 1.7|1464075|31|NZ_CP040612|CRISPRCasFinder matches to NZ_CP024137 (Escherichia coli strain 14EC017 plasmid p14EC017c, complete sequence) position: , mismatch: 7, identity: 0.774

taatggtgttgttaattggaatgcaaaaggg	CRISPR spacer
tagctctgttgttaactggaatgtaaaagga	Protospacer
**..  *********.*******.******.

28. spacer 1.9|1464207|31|NZ_CP040612|CRISPRCasFinder matches to NZ_CP046714 (Nostoc sp. ATCC 53789 plasmid pNsp_k, complete sequence) position: , mismatch: 7, identity: 0.774

tatttgaacgcttaaaatcaagaaaatattg	CRISPR spacer
tatttgaacctttaaaatcaagaaatccgtt	Protospacer
********* .************** .  * 

29. spacer 1.2|1464141|30|NZ_CP040612|CRT matches to JQ340088 (Halocynthia phage JM-2012, complete genome) position: , mismatch: 8, identity: 0.733

actttagttttagactttggaacagtcgag	CRISPR spacer
actttagttttagacttttgatcttctgtt	Protospacer
****************** ** *  ..*  

30. spacer 1.5|1464142|30|NZ_CP040612|PILER-CR matches to JQ340088 (Halocynthia phage JM-2012, complete genome) position: , mismatch: 8, identity: 0.733

actttagttttagactttggaacagtcgag	CRISPR spacer
actttagttttagacttttgatcttctgtt	Protospacer
****************** ** *  ..*  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1372680 : 1381662 10 Bodo_saltans_virus(40.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage