CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040615	Campylobacter sp. CFSAN093256 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9	0	11	1	0

1. NZ_CP040615

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040615_1

• CRISPR_ID: NZ_CP040615_1
• CRISPR_location: 1456142-1456509
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 5 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NZ_CP040615_1

Consensus_repeat	Method
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CRT
CAAATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAATTTTAATGCACTGGGG	PILER-CR

spacers of NZ_CP040615_1

>1.1|1456179|29|NZ_CP040615|CRISPRCasFinder
AGGGGTGATATTGTTATGAGTATTATGCA
>1.2|1456245|29|NZ_CP040615|CRISPRCasFinder
AATTTTAATGCACTGGGGAAACACTGACA
>1.3|1456311|29|NZ_CP040615|CRISPRCasFinder
AATTTTAATGCACTGGGGAAACACTGACA
>1.4|1456377|29|NZ_CP040615|CRISPRCasFinder
AGGGGTGATATTGTTATGAGCATAATGCG
>1.5|1456443|29|NZ_CP040615|CRISPRCasFinder
TATTAAAGCTAATGATGAGGTCATAGTAA
>1.6|1456180|28|NZ_CP040615|CRT
GGGGTGATATTGTTATGAGTATTATGCA
>1.7|1456246|28|NZ_CP040615|CRT
ATTTTAATGCACTGGGGAAACACTGACA
>1.8|1456312|28|NZ_CP040615|CRT
ATTTTAATGCACTGGGGAAACACTGACA
>1.9|1456378|28|NZ_CP040615|CRT
GGGGTGATATTGTTATGAGCATAATGCG
>1.10|1456444|28|NZ_CP040615|CRT
ATTAAAGCTAATGATGAGGTCATAGTAA
>1.11|1456203|26|NZ_CP040615|PILER-CR
GGGGTGATATTGTTATGAGTATTATG
>1.12|1456289|6|NZ_CP040615|PILER-CR
AAACAC

CRISPR arrays and Neighbor proteins around NZ_CP040615_1

CRISPR arrays

The CRISPR arrays of NZ_CP040615_1

>merge|NZ_CP040615|1|1456142-1456509|CRISPRCasFinder,CRT,PILER-CR
TATTTTAGTCCCTTTTTCAATTTCTTTATGGTAAAATAGGGGTGATATTGTTATGAGTATTATGCAAATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAATTTTAATGCACTGGGGAAACACTGACAAATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAATTTTAATGCACTGGGGAAACACTGACAAATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGGGGTGATATTGTTATGAGCATAATGCGAATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATTAAAGCTAATGATGAGGTCATAGTAAAATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP040615|1|1|1456142-1456508|CRISPRCasFinder
TATTTTAGTCCCTTTTTCAATTTCTTTATGGTAAAAT	AGGGGTGATATTGTTATGAGTATTATGCA
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATTTTAATGCACTGGGGAAACACTGACA
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATTTTAATGCACTGGGGAAACACTGACA
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGGGTGATATTGTTATGAGCATAATGCG
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATTAAAGCTAATGATGAGGTCATAGTAA
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP040615|1|1|1456142-1456509|CRT
TATTTTAGTCCCTTTTTCAATTTCTTTATGGTAAAATA	GGGGTGATATTGTTATGAGTATTATGCA
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	ATTTTAATGCACTGGGGAAACACTGACA
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	ATTTTAATGCACTGGGGAAACACTGACA
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	GGGGTGATATTGTTATGAGCATAATGCG
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	ATTAAAGCTAATGATGAGGTCATAGTAA
AATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP040615|1|1|1456143-1456328|PILER-CR
ATTTTAGTCCCTTTTTCAATTTCTTTATGGTAAAATAGGGGTGATATTGTTATGAGTATT	ATGCAAATTTTAGTCCCTTTTTAAAT
TTCTTTATGGTAAAATAATTTTAATGCACTGGGGAAACACTGACAAATTTTAGTCCCTTT	TTAAAT
TTCTTTATGGTAAAATAATTTTAATGCACTGGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040615.1|WP_002867071.1|1463637_1464243_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NZ_CP040615.1|WP_002855997.1|1464239_1464989_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_CP040615.1|WP_002851546.1|1466793_1467243_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_CP040615.1|WP_002868022.1|1464963_1465695_+|glucosaminidase-domain-containing-protein	unknown	unknown	gnl|CDD|225539
NZ_CP040615.1|WP_079264123.1|1447358_1450163_-|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|239153
NZ_CP040615.1|WP_002858151.1|1454832_1456023_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NZ_CP040615.1|WP_002797819.1|1457075_1457966_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|187851
NZ_CP040615.1|WP_002851502.1|1450328_1451042_-|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl|CDD|225916
NZ_CP040615.1|WP_002851537.1|1450162_1450354_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|236534
NZ_CP040615.1|WP_002779488.1|1454160_1454382_+|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|224888
NZ_CP040615.1|WP_002855427.1|1462587_1463577_-|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NZ_CP040615.1|WP_002851264.1|1446720_1447362_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NZ_CP040615.1|WP_002896084.1|1457962_1460917_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226044
NZ_CP040615.1|WP_002781229.1|1454382_1454829_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391
NZ_CP040615.1|WP_002858431.1|1451345_1452494_-|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NZ_CP040615.1|WP_002871851.1|1452617_1454159_+|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043
NZ_CP040615.1|WP_002797817.1|1456651_1457083_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_CP040615.1|WP_002906252.1|1467369_1468590_-|glucose-6-phosphate-isomerase	unknown	unknown	gnl|CDD|235168
NZ_CP040615.1|WP_002851174.1|1445791_1446724_-|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl|CDD|130645
NZ_CP040615.1|WP_002867075.1|1465691_1466729_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040615.1|WP_002797817.1|1456651_1457083_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	5.1e-59	192.3	1.5
NZ_CP040615.1|WP_002896084.1|1457962_1460917_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	0	1179.7	71.6
NZ_CP040615.1|WP_002797819.1|1457075_1457966_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	5.4e-99	325.5	10.2

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040615.1|WP_002867071.1|1463637_1464243_+|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.80993e-71
NZ_CP040615.1|WP_002855997.1|1464239_1464989_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.75008e-93
NZ_CP040615.1|WP_002851546.1|1466793_1467243_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP040615.1|WP_002868022.1|1464963_1465695_+|glucosaminidase-domain-containing-protein	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.02462e-101
NZ_CP040615.1|WP_079264123.1|1447358_1450163_-|formate-dehydrogenase-subunit-alpha	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP040615.1|WP_002858151.1|1454832_1456023_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_CP040615.1|WP_002797819.1|1457075_1457966_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
NZ_CP040615.1|WP_002851502.1|1450328_1451042_-|molecular-chaperone-TorD-family-protein	gnl|CDD|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP040615.1|WP_002851537.1|1450162_1450354_-|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP040615.1|WP_002779488.1|1454160_1454382_+|MoaD/ThiS-family-protein	gnl|CDD|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP040615.1|WP_002855427.1|1462587_1463577_-|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP040615.1|WP_002851264.1|1446720_1447362_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP040615.1|WP_002896084.1|1457962_1460917_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP040615.1|WP_002781229.1|1454382_1454829_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP040615.1|WP_002858431.1|1451345_1452494_-|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP040615.1|WP_002871851.1|1452617_1454159_+|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.64432e-121
NZ_CP040615.1|WP_002797817.1|1456651_1457083_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
NZ_CP040615.1|WP_002906252.1|1467369_1468590_-|glucose-6-phosphate-isomerase	gnl|CDD|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP040615.1|WP_002851174.1|1445791_1446724_-|formate-dehydrogenase-subunit-gamma	gnl|CDD|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NZ_CP040615.1|WP_002867075.1|1465691_1466729_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.51502e-33

Protein sequences

>NZ_CP040615.1|WP_002858151.1|1454832_1456023_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP040615.1|WP_002781229.1|1454382_1454829_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP040615.1|WP_002779488.1|1454160_1454382_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP040615.1|WP_002871851.1|1452617_1454159_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP040615.1|WP_002858431.1|1451345_1452494_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP040615.1|WP_002851502.1|1450328_1451042_-|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP040615.1|WP_002851537.1|1450162_1450354_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP040615.1|WP_079264123.1|1447358_1450163_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWVAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP040615.1|WP_002851264.1|1446720_1447362_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP040615.1|WP_002851174.1|1445791_1446724_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP040615.1|WP_002797817.1|1456651_1457083_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP040615.1|WP_002797819.1|1457075_1457966_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP040615.1|WP_002896084.1|1457962_1460917_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVTLTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP040615.1|WP_002855427.1|1462587_1463577_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP040615.1|WP_002867071.1|1463637_1464243_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENALELEKIFSPFSLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP040615.1|WP_002855997.1|1464239_1464989_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFS
>NZ_CP040615.1|WP_002868022.1|1464963_1465695_+|glucosaminidase-domain-containing-protein
MKPIIIFLSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP040615.1|WP_002867075.1|1465691_1466729_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP040615.1|WP_002851546.1|1466793_1467243_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP040615.1|WP_002906252.1|1467369_1468590_-|glucose-6-phosphate-isomerase
MLNNILFFKQSEIHTISSYANRINDEVKSGDVGYYHLIDTSLNLIDESLKFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHKEGENLAIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTRKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040615_1	1.1|1456179|29|NZ_CP040615|CRISPRCasFinder	1456179-1456207	29	MN530981	Campylobacter phage DA10, complete genome	11420-11448	0	1.0
NZ_CP040615_1	1.6|1456180|28|NZ_CP040615|CRT	1456180-1456207	28	MN530981	Campylobacter phage DA10, complete genome	11420-11447	0	1.0
NZ_CP040615_1	1.11|1456203|26|NZ_CP040615|PILER-CR	1456203-1456228	26	MN530981	Campylobacter phage DA10, complete genome	11422-11447	0	1.0
NZ_CP040615_1	1.2|1456245|29|NZ_CP040615|CRISPRCasFinder	1456245-1456273	29	MN530981	Campylobacter phage DA10, complete genome	33566-33594	1	0.966
NZ_CP040615_1	1.2|1456245|29|NZ_CP040615|CRISPRCasFinder	1456245-1456273	29	KF751797	Campylobacter phage CJIE4-5, complete genome	13906-13934	1	0.966
NZ_CP040615_1	1.2|1456245|29|NZ_CP040615|CRISPRCasFinder	1456245-1456273	29	KF751793	Campylobacter phage CJIE4-1, complete genome	14933-14961	1	0.966
NZ_CP040615_1	1.3|1456311|29|NZ_CP040615|CRISPRCasFinder	1456311-1456339	29	MN530981	Campylobacter phage DA10, complete genome	33566-33594	1	0.966
NZ_CP040615_1	1.3|1456311|29|NZ_CP040615|CRISPRCasFinder	1456311-1456339	29	KF751797	Campylobacter phage CJIE4-5, complete genome	13906-13934	1	0.966
NZ_CP040615_1	1.3|1456311|29|NZ_CP040615|CRISPRCasFinder	1456311-1456339	29	KF751793	Campylobacter phage CJIE4-1, complete genome	14933-14961	1	0.966
NZ_CP040615_1	1.5|1456443|29|NZ_CP040615|CRISPRCasFinder	1456443-1456471	29	MN530981	Campylobacter phage DA10, complete genome	5432-5460	1	0.966
NZ_CP040615_1	1.7|1456246|28|NZ_CP040615|CRT	1456246-1456273	28	MN530981	Campylobacter phage DA10, complete genome	33566-33593	1	0.964
NZ_CP040615_1	1.7|1456246|28|NZ_CP040615|CRT	1456246-1456273	28	KF751797	Campylobacter phage CJIE4-5, complete genome	13906-13933	1	0.964
NZ_CP040615_1	1.7|1456246|28|NZ_CP040615|CRT	1456246-1456273	28	KF751793	Campylobacter phage CJIE4-1, complete genome	14933-14960	1	0.964
NZ_CP040615_1	1.8|1456312|28|NZ_CP040615|CRT	1456312-1456339	28	MN530981	Campylobacter phage DA10, complete genome	33566-33593	1	0.964
NZ_CP040615_1	1.8|1456312|28|NZ_CP040615|CRT	1456312-1456339	28	KF751797	Campylobacter phage CJIE4-5, complete genome	13906-13933	1	0.964
NZ_CP040615_1	1.8|1456312|28|NZ_CP040615|CRT	1456312-1456339	28	KF751793	Campylobacter phage CJIE4-1, complete genome	14933-14960	1	0.964
NZ_CP040615_1	1.10|1456444|28|NZ_CP040615|CRT	1456444-1456471	28	MN530981	Campylobacter phage DA10, complete genome	5432-5459	1	0.964
NZ_CP040615_1	1.2|1456245|29|NZ_CP040615|CRISPRCasFinder	1456245-1456273	29	KF751794	Campylobacter phage CJIE4-2, complete genome	13656-13684	2	0.931
NZ_CP040615_1	1.2|1456245|29|NZ_CP040615|CRISPRCasFinder	1456245-1456273	29	KF751795	Campylobacter phage CJIE4-3, complete genome	11984-12012	2	0.931
NZ_CP040615_1	1.2|1456245|29|NZ_CP040615|CRISPRCasFinder	1456245-1456273	29	KF751796	Campylobacter phage CJIE4-4, complete genome	12022-12050	2	0.931
NZ_CP040615_1	1.3|1456311|29|NZ_CP040615|CRISPRCasFinder	1456311-1456339	29	KF751794	Campylobacter phage CJIE4-2, complete genome	13656-13684	2	0.931
NZ_CP040615_1	1.3|1456311|29|NZ_CP040615|CRISPRCasFinder	1456311-1456339	29	KF751795	Campylobacter phage CJIE4-3, complete genome	11984-12012	2	0.931
NZ_CP040615_1	1.3|1456311|29|NZ_CP040615|CRISPRCasFinder	1456311-1456339	29	KF751796	Campylobacter phage CJIE4-4, complete genome	12022-12050	2	0.931
NZ_CP040615_1	1.7|1456246|28|NZ_CP040615|CRT	1456246-1456273	28	KF751794	Campylobacter phage CJIE4-2, complete genome	13656-13683	2	0.929
NZ_CP040615_1	1.7|1456246|28|NZ_CP040615|CRT	1456246-1456273	28	KF751795	Campylobacter phage CJIE4-3, complete genome	11984-12011	2	0.929
NZ_CP040615_1	1.7|1456246|28|NZ_CP040615|CRT	1456246-1456273	28	KF751796	Campylobacter phage CJIE4-4, complete genome	12022-12049	2	0.929
NZ_CP040615_1	1.8|1456312|28|NZ_CP040615|CRT	1456312-1456339	28	KF751794	Campylobacter phage CJIE4-2, complete genome	13656-13683	2	0.929
NZ_CP040615_1	1.8|1456312|28|NZ_CP040615|CRT	1456312-1456339	28	KF751795	Campylobacter phage CJIE4-3, complete genome	11984-12011	2	0.929
NZ_CP040615_1	1.8|1456312|28|NZ_CP040615|CRT	1456312-1456339	28	KF751796	Campylobacter phage CJIE4-4, complete genome	12022-12049	2	0.929
NZ_CP040615_1	1.4|1456377|29|NZ_CP040615|CRISPRCasFinder	1456377-1456405	29	MN530981	Campylobacter phage DA10, complete genome	11420-11448	3	0.897
NZ_CP040615_1	1.9|1456378|28|NZ_CP040615|CRT	1456378-1456405	28	MN530981	Campylobacter phage DA10, complete genome	11420-11447	3	0.893
NZ_CP040615_1	1.11|1456203|26|NZ_CP040615|PILER-CR	1456203-1456228	26	KY971610	Pseudomonas phage PspYZU05, complete genome	126697-126722	4	0.846
NZ_CP040615_1	1.1|1456179|29|NZ_CP040615|CRISPRCasFinder	1456179-1456207	29	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	25137-25165	5	0.828
NZ_CP040615_1	1.1|1456179|29|NZ_CP040615|CRISPRCasFinder	1456179-1456207	29	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	35853-35881	5	0.828
NZ_CP040615_1	1.6|1456180|28|NZ_CP040615|CRT	1456180-1456207	28	KY971610	Pseudomonas phage PspYZU05, complete genome	126697-126724	6	0.786
NZ_CP040615_1	1.9|1456378|28|NZ_CP040615|CRT	1456378-1456405	28	MN693011	Marine virus AFVG_117M58, complete genome	37895-37922	6	0.786
NZ_CP040615_1	1.10|1456444|28|NZ_CP040615|CRT	1456444-1456471	28	NZ_CP031272	Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence	955-982	6	0.786
NZ_CP040615_1	1.10|1456444|28|NZ_CP040615|CRT	1456444-1456471	28	NZ_CP054016	Staphylococcus warneri strain FDAARGOS_754 plasmid unnamed, complete sequence	36877-36904	6	0.786
NZ_CP040615_1	1.10|1456444|28|NZ_CP040615|CRT	1456444-1456471	28	NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	23003-23030	6	0.786
NZ_CP040615_1	1.1|1456179|29|NZ_CP040615|CRISPRCasFinder	1456179-1456207	29	KY971610	Pseudomonas phage PspYZU05, complete genome	126696-126724	7	0.759
NZ_CP040615_1	1.4|1456377|29|NZ_CP040615|CRISPRCasFinder	1456377-1456405	29	MN693011	Marine virus AFVG_117M58, complete genome	37895-37923	7	0.759
NZ_CP040615_1	1.5|1456443|29|NZ_CP040615|CRISPRCasFinder	1456443-1456471	29	NZ_CP031272	Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence	955-983	7	0.759
NZ_CP040615_1	1.5|1456443|29|NZ_CP040615|CRISPRCasFinder	1456443-1456471	29	NZ_CP054016	Staphylococcus warneri strain FDAARGOS_754 plasmid unnamed, complete sequence	36877-36905	7	0.759
NZ_CP040615_1	1.5|1456443|29|NZ_CP040615|CRISPRCasFinder	1456443-1456471	29	NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	23002-23030	7	0.759
NZ_CP040615_1	1.6|1456180|28|NZ_CP040615|CRT	1456180-1456207	28	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	25138-25165	7	0.75
NZ_CP040615_1	1.6|1456180|28|NZ_CP040615|CRT	1456180-1456207	28	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	35854-35881	7	0.75

1. spacer 1.1|1456179|29|NZ_CP040615|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

aggggtgatattgttatgagtattatgca	CRISPR spacer
aggggtgatattgttatgagtattatgca	Protospacer
*****************************

2. spacer 1.6|1456180|28|NZ_CP040615|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ggggtgatattgttatgagtattatgca	CRISPR spacer
ggggtgatattgttatgagtattatgca	Protospacer
****************************

3. spacer 1.11|1456203|26|NZ_CP040615|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ggggtgatattgttatgagtattatg	CRISPR spacer
ggggtgatattgttatgagtattatg	Protospacer
**************************

4. spacer 1.2|1456245|29|NZ_CP040615|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgaca	Protospacer
*********.*******************

5. spacer 1.2|1456245|29|NZ_CP040615|CRISPRCasFinder matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 1, identity: 0.966

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgaca	Protospacer
*********.*******************

6. spacer 1.2|1456245|29|NZ_CP040615|CRISPRCasFinder matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 1, identity: 0.966

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgaca	Protospacer
*********.*******************

7. spacer 1.3|1456311|29|NZ_CP040615|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgaca	Protospacer
*********.*******************

8. spacer 1.3|1456311|29|NZ_CP040615|CRISPRCasFinder matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 1, identity: 0.966

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgaca	Protospacer
*********.*******************

9. spacer 1.3|1456311|29|NZ_CP040615|CRISPRCasFinder matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 1, identity: 0.966

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgaca	Protospacer
*********.*******************

10. spacer 1.5|1456443|29|NZ_CP040615|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

tattaaagctaatgatgaggtcatagtaa	CRISPR spacer
tattaaagctaatgatgaggtcatagtga	Protospacer
***************************.*

11. spacer 1.7|1456246|28|NZ_CP040615|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.964

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgaca	Protospacer
********.*******************

12. spacer 1.7|1456246|28|NZ_CP040615|CRT matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 1, identity: 0.964

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgaca	Protospacer
********.*******************

13. spacer 1.7|1456246|28|NZ_CP040615|CRT matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 1, identity: 0.964

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgaca	Protospacer
********.*******************

14. spacer 1.8|1456312|28|NZ_CP040615|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.964

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgaca	Protospacer
********.*******************

15. spacer 1.8|1456312|28|NZ_CP040615|CRT matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 1, identity: 0.964

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgaca	Protospacer
********.*******************

16. spacer 1.8|1456312|28|NZ_CP040615|CRT matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 1, identity: 0.964

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgaca	Protospacer
********.*******************

17. spacer 1.10|1456444|28|NZ_CP040615|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.964

attaaagctaatgatgaggtcatagtaa	CRISPR spacer
attaaagctaatgatgaggtcatagtga	Protospacer
**************************.*

18. spacer 1.2|1456245|29|NZ_CP040615|CRISPRCasFinder matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 2, identity: 0.931

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgata	Protospacer
*********.*****************.*

19. spacer 1.2|1456245|29|NZ_CP040615|CRISPRCasFinder matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 2, identity: 0.931

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgata	Protospacer
*********.*****************.*

20. spacer 1.2|1456245|29|NZ_CP040615|CRISPRCasFinder matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 2, identity: 0.931

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgata	Protospacer
*********.*****************.*

21. spacer 1.3|1456311|29|NZ_CP040615|CRISPRCasFinder matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 2, identity: 0.931

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgata	Protospacer
*********.*****************.*

22. spacer 1.3|1456311|29|NZ_CP040615|CRISPRCasFinder matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 2, identity: 0.931

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgata	Protospacer
*********.*****************.*

23. spacer 1.3|1456311|29|NZ_CP040615|CRISPRCasFinder matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 2, identity: 0.931

aattttaatgcactggggaaacactgaca	CRISPR spacer
aattttaatacactggggaaacactgata	Protospacer
*********.*****************.*

24. spacer 1.7|1456246|28|NZ_CP040615|CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 2, identity: 0.929

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgata	Protospacer
********.*****************.*

25. spacer 1.7|1456246|28|NZ_CP040615|CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 2, identity: 0.929

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgata	Protospacer
********.*****************.*

26. spacer 1.7|1456246|28|NZ_CP040615|CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 2, identity: 0.929

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgata	Protospacer
********.*****************.*

27. spacer 1.8|1456312|28|NZ_CP040615|CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 2, identity: 0.929

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgata	Protospacer
********.*****************.*

28. spacer 1.8|1456312|28|NZ_CP040615|CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 2, identity: 0.929

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgata	Protospacer
********.*****************.*

29. spacer 1.8|1456312|28|NZ_CP040615|CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 2, identity: 0.929

attttaatgcactggggaaacactgaca	CRISPR spacer
attttaatacactggggaaacactgata	Protospacer
********.*****************.*

30. spacer 1.4|1456377|29|NZ_CP040615|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 3, identity: 0.897

aggggtgatattgttatgagcataatgcg	CRISPR spacer
aggggtgatattgttatgagtattatgca	Protospacer
********************.** ****.

31. spacer 1.9|1456378|28|NZ_CP040615|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 3, identity: 0.893

ggggtgatattgttatgagcataatgcg	CRISPR spacer
ggggtgatattgttatgagtattatgca	Protospacer
*******************.** ****.

32. spacer 1.11|1456203|26|NZ_CP040615|PILER-CR matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 4, identity: 0.846

ggggtgatattgttatgagtattatg	CRISPR spacer
gctgtgatatttttatgagtattatt	Protospacer
*  ******** ************* 

33. spacer 1.1|1456179|29|NZ_CP040615|CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 5, identity: 0.828

--aggggtgatattgttatgagtattatgca	CRISPR spacer
ctagtgtt--tattgttatgaggattatgca	Protospacer
  ** * *  ************ ********

34. spacer 1.1|1456179|29|NZ_CP040615|CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 5, identity: 0.828

--aggggtgatattgttatgagtattatgca	CRISPR spacer
ctagtgtt--tattgttatgaggattatgca	Protospacer
  ** * *  ************ ********

35. spacer 1.6|1456180|28|NZ_CP040615|CRT matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 6, identity: 0.786

ggggtgatattgttatgagtattatgca	CRISPR spacer
gctgtgatatttttatgagtattatttc	Protospacer
*  ******** ************* . 

36. spacer 1.9|1456378|28|NZ_CP040615|CRT matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 6, identity: 0.786

ggggtgatattgttatgagcataatgcg	CRISPR spacer
aaaggcatattgttatgagcataatgcc	Protospacer
...*  ********************* 

37. spacer 1.10|1456444|28|NZ_CP040615|CRT matches to NZ_CP031272 (Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

attaaagctaatgatgaggtcatagtaa	CRISPR spacer
gttaaagataatgatgaagtcataggtg	Protospacer
.****** *********.*******  .

38. spacer 1.10|1456444|28|NZ_CP040615|CRT matches to NZ_CP054016 (Staphylococcus warneri strain FDAARGOS_754 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

attaaagctaatgatgaggtcatagtaa	CRISPR spacer
gttaaagataatgatgaagtcataggtg	Protospacer
.****** *********.*******  .

39. spacer 1.10|1456444|28|NZ_CP040615|CRT matches to NZ_CP051645 (Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence) position: , mismatch: 6, identity: 0.786

attaaagctaatgatgaggtcatagtaa	CRISPR spacer
gttaaagataatgatgaagtcataggtg	Protospacer
.****** *********.*******  .

40. spacer 1.1|1456179|29|NZ_CP040615|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 7, identity: 0.759

aggggtgatattgttatgagtattatgca	CRISPR spacer
cgctgtgatatttttatgagtattatttc	Protospacer
 *  ******** ************* . 

41. spacer 1.4|1456377|29|NZ_CP040615|CRISPRCasFinder matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 7, identity: 0.759

aggggtgatattgttatgagcataatgcg	CRISPR spacer
taaaggcatattgttatgagcataatgcc	Protospacer
 ...*  ********************* 

42. spacer 1.5|1456443|29|NZ_CP040615|CRISPRCasFinder matches to NZ_CP031272 (Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

tattaaagctaatgatgaggtcatagtaa	CRISPR spacer
agttaaagataatgatgaagtcataggtg	Protospacer
 .****** *********.*******  .

43. spacer 1.5|1456443|29|NZ_CP040615|CRISPRCasFinder matches to NZ_CP054016 (Staphylococcus warneri strain FDAARGOS_754 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

tattaaagctaatgatgaggtcatagtaa	CRISPR spacer
agttaaagataatgatgaagtcataggtg	Protospacer
 .****** *********.*******  .

44. spacer 1.5|1456443|29|NZ_CP040615|CRISPRCasFinder matches to NZ_CP051645 (Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence) position: , mismatch: 7, identity: 0.759

tattaaagctaatgatgaggtcatagtaa	CRISPR spacer
agttaaagataatgatgaagtcataggtg	Protospacer
 .****** *********.*******  .

45. spacer 1.6|1456180|28|NZ_CP040615|CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 7, identity: 0.75

ggggtgatattgttatgagtattatgca	CRISPR spacer
tagtgtttattgttatgaggattatgca	Protospacer
 .*    ************ ********

46. spacer 1.6|1456180|28|NZ_CP040615|CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 7, identity: 0.75

ggggtgatattgttatgagtattatgca	CRISPR spacer
tagtgtttattgttatgaggattatgca	Protospacer
 .*    ************ ********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1364785 : 1373769	9	Bodo_saltans_virus(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP040615|1364785:1373769|DBSCAN-SWA
TTTATTTATTAATCCAATATTTGTCAATTAAATACTCATTTGGAGTTCCAAAAGAAAAATAGTTATCAAGTAAAACATAGTAAATTTTATTTTTACCAAGCATAAGATTAAAAACATTATCTATAAAAAATTCATCGTTAACTTTGACTTCTTTTTTAAACATTTCATTGATATAGGAAATTAAAGTTTGATTGTTTTTAAAATAAAAACTTCCTATCATAATTAAATGACTATTTTCAGCTCTATACTTCACACATATTTCCTTTACAAATCCTTTTTCATCACCATTTACCCAAGTAAAATAATTTGGATTATCGTAATTAAATTTGGAAGCTTTAGCAACAAAAATAATTGCATCAGATTCATCCTTTATTTTTTTAAAATCTGAATTTATATGCTTAGCAAGCAAATCACAAGGCAATATCAAAACATCTCCTTTCAAATCTGCACAAGATTCTTTATAAGAATACGCTGCGCCTATTTTATTTGGCTTAACATATCTAACTTCAGTTTTTATATTTTGCCAATATTTCTCATGATCTTGTGCTCCAACACAAATAATATTTGTATGGACATTCTCCAATTTTTCAATAATATTATTTATAATAGTTGATTGACCAAGCGGTAGAAATGGTTTAGGTTGAGAAAAATTTAAATTTAAAAATCTTTCACCACGACCAGCTGATAAAATTACAGTATTGTCTATATCAATTTGCTCGTTTATTAAGTTTGTACTTATTCTCAATTTTTCCTTGGCGTATTCGAAATCCTTTGGAGTGCCAAATTGATAAAACTTCTCTACAAAAGGATAGCAAAGTACTTTTTGAAGATAATTATTTGTTATTGATAAATAATATTCACCATTTAGCATATCAATAGCAGCAATCTGTTTTTCTATAGCTTCAAAAACTATTTTTAAAGATTTAAAATAATAAATTCCGCTAGAGTGAAATTCATTAAATTTATCTTTAGAGCAATATTTTTCTATAACTTTATATACGGTATTGCTTTTATCATATACTTTACATACCGCATAAACATTCTCAACTGGTTCTAGATGTGGATGATAACCCGTATAACAAGGAATAATACCTTGTGCTTCATTATTCTTTTTAACAAAATCTAAAAAATGTTCATAGTTCCATTTTTGACCAAAATCACAATAGCTAACAATTACAGGCTTGTCTAAAATTTCATCTAAAAAATCTCTTACACCAATTAAAGTTCCAGCTGGACCAAGCTTTAATCCATCATAGACTATGACATTAGCATTTAACTTTCTGCTTGTTATAAAATTAATAAATTTATCCTGCTCTTCTTTTCTAATAATAAAATAAAATTTATCTTTTATTTTATCAAAACAATTTACCACAAAATCTAAAATACAATTATTTTCATTTACTTTTATAAACGGTTTTAACTCTTTATAACCAGCTTCCTTAAAACGCTTGCCTATTCCAGTGGCTGGTATAATAATATTCATTATTTCTCCTTATCTTGCATATACCCATATCGGTATTTTTCTTCTGGCATATTAATCAAGTTTGTAATTTGTATTGCACTAATTTCAGATAAATTTAATTGTTTTTTTCTAGCAATATTTTCCATTGCCTCTCTAAATAACCACAACTCAAAACTTTCAACATCTATAGCATCATCGGGTGTAAAAATGTTATTATTTTTTTCAAAAAATTCATTTTTTAATGTTTGATGAAGTATAAATAAATCTTCTAGTATTTCTGAAAATATAATAACTCCATGATTTCTTAACATTACCATTCCTTTTTGCTCATAATAATACTTTTTAGATAATTCTTTACATAATTGTTCTCCAGGTAAAATAAAGTCTATGCATTTATAAGTAAATTTAAAATTTTTATCACAAAGATATGGTAAAATATAGACTGGATGATAATGAACTACATATTTATTTTGAATTATTCTATGCATTCCAATCTCCATTGAAGGCTTTGTTATATTGCCTATTTTATTACTAAAATAAGTTCCAATATTATTCTCATTTTCCAATATGCAAATTTTGTGTTCTTGTTTTAAATCTTGACCAGAGGCTTTTATAATCATATATTTATCATTTTTTATTGAAATATTACCTCCTTTAGAAGGAGTATCTAAAATATTTCCAAAAACCTTACATATATTATAATACTCTTTAATTAAACAATGCAATTCTTTATTTATTTCCATTTCACTTTACCCAACGATTATTTATAATTTTTGACATTATATCTTTAATAGTATCAATTAAATTATGATATTCACCTTCATAAATATTTTGCAAGTTAGCACTTTTTAAAATACCTGAAAGTTCTATTTTAAATTTCTTATTTCTTATCGTAATTAAAAAATTTGCATTATCTTTTTGTTTATACAAATAATGCAGATAATCTTCTTCTCGCTTTTGGATAGAATTAATAATTTTATCTAATTTATATCCACGTTCTTTTATATCTCTTTGTATTTTTTGATTGTCAGATTCATCTGAATCTATAAAAATTTTAATTTTTACAAAATCACCAATAACCTCTTGATATAAAGTATGCAAACCTTCAATAATTACAATATCCAAATCCTTTGTTTTTATCAGATCTGATGTCAAAAAATTACCAGAAACATGATCATATAGCGGAATACATAAATCATGAATATCTTGATATATACATTTAATATCTAACGCCAATTGAATAAGATTGTTCCCCTCTGGATTATAATGTGTTATTCTCTCCCATACAGTAGAATACCTATCAAATTTATGGTAACCATCAGCACCAATTACCATACAATCACAAACCGATTTAATAGCACTACCAAGTGTAGATTTTCCAGATCCACTTTTACCAGATATAGAAATTAATAATTTTGAACAATTATAAGGATAATACTTTATATCATAAATACCTAGATCATCAGCTATAGAATCTCCTATCATTACAACCTTATCTTTTGAGTCAATTTTAGCTAATTCAAAAGCTCTATCTATTAATTTTTTATGTGGCTTTTCCACTTCAAATTCTTCTGAGCAAATTAAAAAATCAAGCATTAAAGATAAATTTGCATAATTAAGTTTGTTAATTTGTTCAATAAAATAAAAATTAGTAATGGCTAAAATCTTTCTATTAATACTTTTAGCATAAACTAAAAAATCAAACATTGTCTTATCAACTTTAATATTATAGAGAAATTCTTTTATGTATAACTCAAACATATTTTTAGCCTGAATAAAATGTATATTTTTCTCTTCACACATTAATTTAAAGTATAATTCTTTTTTATGATGATTTACAGATAAATCTCGAGCTTTAATTTGCATTCTTGCATATTCATAATCTTCCATCGAAAAATTATATTTTTTTAAAACATTTTGCAAAGCTTTGTTATGTGCATAAGTATAGTTAAATAAAGTATTGTCAATATCCACCATAATAAGTTGATATTTATTAGCTAAATACTGAAAATTAAACATAAGAACCCCAAAGCTCCGGATTTTTTGTACATACTGAAAAACTATTTGGCAAAACTTGACAAATTTGTTGTATTAAGACTGTATAAGATAAATTATAAAGCTCCGGTGATACTATAATGGGCTCTATTTTTTTATCGATACTTTTATACAAATTGTTAATAAACTTAGCATATTCTTTTATATCGAAATCAGCAAATTGAGAATAATCAACCCATAAATACTTTGGCTCAGTTAATTCAATAATCTTGTAATTTAGTGTTTCTACATCAGAAACACGAATGATAAATTTCCCTTTTATTTTTTTTGAAATTCTTAAAATATCAGGAATCTGAGAATCTAAAAAATAATACTCATACCCCCCCCTGTCATCATTTTACCATGATTGTCAAAAATCTCAATAACAAGCTCTTCTAAATTTGATTCTTTAATATTGCAAATTATGGGTATATTTTTAAAGAATTCTAATTTTTCAGTAAATAACGGATATTTTATATTAGATTCGAGTAAATCATGATTTAAAACCAAACCTTGTTTATTACGCCTTAAATCAATCTCTACACCAAAATTTCTAACTTTCTTAGAAATATTATTTTGACGATGTAAAAAAACCATCTATATTACCTTTATACATAAAATTATAATAATCCTCAGGCACGCCAATATCTATAAAATAATCATCAAAAATATGAGCTTTAGCTTTTAGTTTTTTATAATTTTCTTGCAAAAATTCTTCAAAAGAAAATTTTTCCTGCAAAGCAAAATCTTTAAAAATATCTTTATCTAAAAGATAAATTCCACCATTGATTAAACCTTGCTTTTTGAATACCTTTTCCTCAAAAGAAATTACAAGACCTAGCCCATCAACATTTACCGTGCCATATCTATCAAAATCATTCATTTGTTTTAAAGCAAGGCAAATTTTACCTCCATTTAGCTTTAATTTGCTTAAATCTATGCCAAAAAAAGTATCGCCATTTAAAACATAAGCCTCGTTTTTTATAATTTTCAAAGCCTCTTTTATAGCTCCACCCGTTCCTAGAGGCTCTTTTTCTATACTGTATTTTATTTTTATGCCTAAAAACTCATCTTTAAAATACTCTTTTATCACTTCATATTTGTATGATACCGCTAAGATAACTTCTTTTATGCCTTGCTTTTTAAGATACTCAAAAATAAATTCTAAAAAAGGCTTATCATTTATCGGTGCCATAGGCTTTGGAATGTCTTTTATAACACTTTTAAGCCTTGTTCCTAAGCCGCCACAAAGTATTATTGCTTGCAAGAAAAACCTTTGCCAAAAAGCTCTTCTTCAACGATAGCACAAATAATATGTCCTATTAAAATATGTGCTTCTTGAATTCTTGGTGTGCAAGTTGAAGGTACTTTTATACAATAATCACAAAGCTCATTCATATCCCCGCCATTAGCTCCGCTTAAGCCTATGCTTATGATTTCTTTTTGCTTGCAAAGCTCTAAAGCCTTTAAAATATTTTTACTATTTCCACTTGTAGAAATTCCTATAAAAACATCTCCTTTAACACCCTGTGCTTGCACTTGTCTTGCAAATAAATTTTCATAACCATAGTCATTGCCAATAGCTGTTAATATGCTAGTATCTGTAGTAAGTGCAATACTTGCGATACCGGGTCTATCAAAATAAAACCTACTTACAAATTCCCCTGCGATATGCTGTGCATCTGCAGCACTACCACCATTTCCTGCAAGTAAAGTTTTGTTACCATTTTTATAAGCTTTTATGACTTCTAATGAAGCATTTTTAATAAGAGTTATCAAATTCTCATCTTTTAAAATTTGCTCTTTTACTAAAATTGATTCTTGAAAATGTTCTTTTATATAAGAATTTAAATTCTCCATGATTTAACCCCCTCTTTTGTAAATGAAAAATCTTGCACATAACCTTGCTCTTTGCTTAAAGCTTTGATTAAGTTGTATTTTTTTGTAGGATCCACAAAGAAAAACATAAATCCACCTGCTCCTGCTCCACTAGTTTTGCCACTATAAGCTCCATTATCTATAGCTAGTTTATAAATTCTTTCAAGCTCATCATTACTAACGATTTCTGAAATGATTTTTTTTGACTGCCAAGACTTGCCTAAAATTTTCGCCAAAGTATCAAAATCCGCCTTAAATAAAGCTTCTTTCATCTTTATAGCATCTTGTTTTATAGCGTGCATAGCTTCAAGGGATTTTTCATCTCCGAGCTTTCCTTTTTTATGCTCTTCTATATCTTTTGCTTCTCTTGTGATATTTGTAAAATAAAGCACAATTCTAGCTTCAAGCTCACTAGCTATCCAGTTTTTAATGCGCAAAGGATTAACAATGACTCTTTTATTATTATAAAATTCCATAAAATTAAAGCCACCAAAAGTTGCGGCGTATTGATCTTGTGCTCCACCTACTATACCTAAATCTTCTCTTTCTATCTCATAAGCAAGTTTAGCGATTTCATATTCCCCTAAAGGTAGATTAAGCCATTCTGCAAAGGCTTTTATAACCCCTACAACTAAGGTTGAGCTTCCGCCCAAACCACTACCACTTGGTACATCCGAATAAGTGTGCAAAGAAAAACTCAAAGGTTTTTTTGTAAAATCTTTTACAATGCGATTATAAATGCTTTTAAAAATATCTAATTTTCCATCATTTTCTAAGAATTCTTTGCTTTCATACTCACAGTAAGAATTTGTATCAGGAGAATCAAAAATGATTTTTCCATCTTCTCTTTCGATCAAAGTACAATGTATGTATAAAGATATAGTCGCATTTAAAACATAACCTGTGTATTTATCACAATATAAATTTATATCAGTCCCCCCACCTGCTAAACCAAGGCGGAGAGGAGTTTGCGTGCGTATAGTTTTCATCTATTTAAAGGAATCCTTCCTTTTTTTATCTCGTCTCTCCAATGATTTAACAAATCCTCAAACATTTTTCTAGCTGGAATTTCTGGCTTCCAGTTGATATAACGTTTGATTTTAGTATTGTCAAACATTTGATAATCCGCATCAATAGGACGCAATCTTTCTTCATCTTGCTCTACTTTAATATCTTTTCTTGTAGAAAAACCTAAAAGTATATCAATAACCTCAGGGAGTTTAAAAACTTCTTCTCCTGCTATATTAAAAGCTTCCCCACAAGGAACTTTTCCTTTTTCACTTTCAAGAGAAAGTAGATAATAAGCCCTTATAGCATCACGACAATCTTGAAAGGTTCTTACACTTGAAAGATTTCCAACCTTGATAACAGGCTCTTGATAACCCGCTTCAATCAAAGCAATTTGCTTTGCAACCGTGCTTTCAAAAAACACATCGCTTCTTCTTGGGCCACTATGCGTTCCCATTCTTGTAACAAAAGTGCGAATGTTATAAGCTTCGCCATAAAATCTTCCCAAATAATCAGTGCCAATTTTGCTTATGCTATAAGGACTTGCACCGTGAAAAGCTGTTTCTTCATTAAGTTTAACACCTGTTTTTGCTTTACCATAAACTTCACTTGAAGAGCAGATATGTACTACAGGGTCATATCCATCTTTTGCCTTTAAAATTCTAATGTTTTCCAAAATATTTGCTGTTCCTATGATATTTGTTTGTAATGTTTCTATAGGTATATCAAAAGAAGTTTTTGGATAAGATTGAGCTGCTAGGTGAAAAATCACATCAGGCCTTTGACTCTCGAAAAGTTTTTGAAGACTAGAGTAATCATTTAAATCTGCATAAAAAATACTGATTCTATCTTTTTTATTAATCCTATCGCTTAAATGATAGATATTATCCATAGGTTCTTGCCAACGCATCATACCTATAACATCATAGTCTGTGTTTTCTAGCAAGAAATCTGCCATTTGTGAGCCAACTTGCCCTGTAAATCCTGTAATTAATGCTGTTTTTTTCATGATTTATCCTATTGTCTTATATTTTGCTCTTTTAAATACCATTCATACATCATTTTAATGCCGTCTTCAAGCTTGATTTTTGCCTTCCAGCCTAAATTTTGCAATCTTGAACTATCTAACATTCTATCCATTGTAGAATCTGGTTTTGAATTGTTAAACATAATTTCACCCTTAAATCCAACAATATTTTTAATCAAACAAGCAAGTTCTTTTATGCTTAAAAATTCCCCACTTCCTACATTAAGATGCGGTTCATTAGATGAAACAATATCTTTAAAATCTATATTTTTCATCACATAAATAGAAGCATTGACTAAATCTTTTGCATGAATAAATTCCCTAATTACACTACCACTACCCCAAATTTCTACGCTATCTTTACTTACACCAAATTTTTGTAAATATTCCATTGCTTGCTCTAAGAAATTCATTTGCAAATCCTTTAAAACCTCATCAATTTTATTTTCATCTAAAAGCTTTGCTAAATGAAATTTGCGAAGCAAAGCCGGTAAAACTTTTGCTTTTTGTAAATCAAACTCGGTTGTTTCTCCATACAAATTTGCAAGATACAAAGTGATAAAATTTGTTCCATATTGCAAATTATAACTTTCGCACATTTTTGTTCCTATAATTTTTGGTAAACCATATGCAACGGCTTTTAAATCTAGCTTTCCATCTAATAAATTCTCTTCTTTAATGGGATTTATAGCTTTTTGAGGGTAAGCCCAAGCAGAACCGTAAAAAATTAGCTTTTTAACATTATTTTGATAAGATGAATGAATAATATTTGCTTGAAGTACGCTATTTTCATAAATTACATCGGCTGGAGTAAAAAGCCCTAAGGTATCAAGCTTGGCAGCACATAAAAAAACATATTCTGGTTTTTCTTTTGCGAAAAAATCAGTCACAGCTTTTTGATCTACTAAATCTAATTCTTTTCTTGTTTTTACGATAATATTATTAAAACCCTCATCTATAAGTGTATTATAAAGAGTTTTTCCCAAAGTGCCGCCATGCCCTGCTATATAAATTTTAGAATCTTTTTGCATCATTTATCCTTACTCATCGCTAAAATATCACGCTCTGAAAGGATAGGAGAATTTGTTGGCCAATCTATACCAATTCTTTCATCATTCCATGCATAAGTAAATTGATCATGTGCATCCATATATTCTCCTAAATAAGCACATTTATAGTAATAAACTGCACTTTCACTGCTAACATAATGAGCATTTCCAAAACCTGCTGGAACTAAAATGATTTGCTGATTATCTTGATTTATGATGAATCTTTCATGCTTCAAATAAGTTGGTGAATCTTTTCTGCAATCAACCACAACTTGATGCACTTCTCCATAAACACAAGTGGCAAGCTTATAAGTTTTTACATCGCCATGGATACCGCGGATAACATTATGTTTAGAATGTATGAATTTATCGTGTATAAATTTTAATCCATTTGGCAAGAGTTTATCTATGGCTTCACTTGTAAAAGCTGTCCAAATTTCACCCCTTAAATCTCTAAATTTGTTAGGAGTTATAATATACACTCCTTTTAAAATTTTTGATTCTTGTATATCAAATTCTATTGCCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP040615|1364785:1373769|1368851_1369547_-|WP_002872116.1|DBSCAN-SWA
MQAIILCGGLGTRLKSVIKDIPKPMAPINDKPFLEFIFEYLKKQGIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKIIKNEAYVLNGDTFFGIDLSKLKLNGGKICLALKQMNDFDRYGTVNVDGLGLVISFEEKVFKKQGLINGGIYLLDKDIFKDFALQEKFSFEEFLQENYKKLKAKAHIFDDYFIDIGVPEDYYNFMYKGNIDGFFTSSK
>NZ_CP040615|1364785:1373769|1372183_1373224_-|WP_002917969.1|DBSCAN-SWA
MQKDSKIYIAGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVDQKAVTDFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNNVKKLIFYGSAWAYPQKAINPIKEENLLDGKLDLKAVAYGLPKIIGTKMCESYNLQYGTNFITLYLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNFLEQAMEYLQKFGVSKDSVEIWGSGSVIREFIHAKDLVNASIYVMKNIDFKDIVSSNEPHLNVGSGEFLSIKELACLIKNIVGFKGEIMFNNSKPDSTMDRMLDSSRLQNLGWKAKIKLEDGIKMMYEWYLKEQNIRQ
>NZ_CP040615|1364785:1373769|1366266_1366989_-|WP_002872119.1|DBSCAN-SWA
MEINKELHCLIKEYYNICKVFGNILDTPSKGGNISIKNDKYMIIKASGQDLKQEHKICILENENNIGTYFSNKIGNITKPSMEIGMHRIIQNKYVVHYHPVYILPYLCDKNFKFTYKCIDFILPGEQLCKELSKKYYYEQKGMVMLRNHGVIIFSEILEDLFILHQTLKNEFFEKNNNIFTPDDAIDVESFELWLFREAMENIARKKQLNLSEISAIQITNLINMPEEKYRYGYMQDKEK
>NZ_CP040615|1364785:1373769|1373223_1373769_-|WP_002858844.1|DBSCAN-SWA
MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAIDKLLPNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQQIILVPAGFGNAHYVSSESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGIDWPTNSPILSERDILAMSKDK
>NZ_CP040615|1364785:1373769|1364785_1366267_-|WP_002872120.1|DBSCAN-SWA
MNIIIPATGIGKRFKEAGYKELKPFIKVNENNCILDFVVNCFDKIKDKFYFIIRKEEQDKFINFITSRKLNANVIVYDGLKLGPAGTLIGVRDFLDEILDKPVIVSYCDFGQKWNYEHFLDFVKKNNEAQGIIPCYTGYHPHLEPVENVYAVCKVYDKSNTVYKVIEKYCSKDKFNEFHSSGIYYFKSLKIVFEAIEKQIAAIDMLNGEYYLSITNNYLQKVLCYPFVEKFYQFGTPKDFEYAKEKLRISTNLINEQIDIDNTVILSAGRGERFLNLNFSQPKPFLPLGQSTIINNIIEKLENVHTNIICVGAQDHEKYWQNIKTEVRYVKPNKIGAAYSYKESCADLKGDVLILPCDLLAKHINSDFKKIKDESDAIIFVAKASKFNYDNPNYFTWVNGDEKGFVKEICVKYRAENSHLIMIGSFYFKNNQTLISYINEMFKKEVKVNDEFFIDNVFNLMLGKNKIYYVLLDNYFSFGTPNEYLIDKYWINK
>NZ_CP040615|1364785:1373769|1369534_1370140_-|WP_002896838.1|DBSCAN-SWA
MENLNSYIKEHFQESILVKEQILKDENLITLIKNASLEVIKAYKNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYENLFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGANGGDMNELCDYCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ
>NZ_CP040615|1364785:1373769|1366990_1368265_-|WP_002872118.1|DBSCAN-SWA
MFNFQYLANKYQLIMVDIDNTLFNYTYAHNKALQNVLKKYNFSMEDYEYARMQIKARDLSVNHHKKELYFKLMCEEKNIHFIQAKNMFELYIKEFLYNIKVDKTMFDFLVYAKSINRKILAITNFYFIEQINKLNYANLSLMLDFLICSEEFEVEKPHKKLIDRAFELAKIDSKDKVVMIGDSIADDLGIYDIKYYPYNCSKLLISISGKSGSGKSTLGSAIKSVCDCMVIGADGYHKFDRYSTVWERITHYNPEGNNLIQLALDIKCIYQDIHDLCIPLYDHVSGNFLTSDLIKTKDLDIVIIEGLHTLYQEVIGDFVKIKIFIDSDESDNQKIQRDIKERGYKLDKIINSIQKREEDYLHYLYKQKDNANFLITIRNKKFKIELSGILKSANLQNIYEGEYHNLIDTIKDIMSKIINNRWVK
>NZ_CP040615|1364785:1373769|1370127_1371147_-|WP_002872115.1|DBSCAN-SWA
MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCTLIEREDGKIIFDSPDTNSYCEYESKEFLENDGKLDIFKSIYNRIVKDFTKKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQDQYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELEARIVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELERIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFTKEGVKSWRI
>NZ_CP040615|1364785:1373769|1371143_1372175_-|WP_100613150.1|DBSCAN-SWA
MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQTNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKTGVKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVIKVGNLSSVRTFQDCRDAIRAYYLLSLESEKGKVPCGEAFNIAGEEVFKLPEVIDILLGFSTRKDIKVEQDEERLRPIDADYQMFDNTKIKRYINWKPEIPARKMFEDLLNHWRDEIKKGRIPLNR

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002872120.1|1364785_1366267_-	NTP transferase domain-containing protein	A0A2H4UUJ1	Bodo_saltans_virus	3.4e-47	28.3
WP_002872119.1|1366266_1366989_-	class II aldolase/adducin family protein	A0A2H4UUW4	Bodo_saltans_virus	1.5e-11	30.4
WP_002872118.1|1366990_1368265_-	HAD hydrolase-like protein	A0A2H4UUR3	Bodo_saltans_virus	7.6e-19	25.6
WP_002872116.1|1368851_1369547_-	NTP transferase domain-containing protein	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	8.1e-07	27.6
WP_002896838.1|1369534_1370140_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.3e-16	35.0
WP_002872115.1|1370127_1371147_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	3.0e-58	40.2
WP_100613150.1|1371143_1372175_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	3.8e-146	73.0
WP_002917969.1|1372183_1373224_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	9.7e-65	40.2
WP_002858844.1|1373223_1373769_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D7XFA9	Escherichia_phage	3.7e-15	30.4