CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040617	Campylobacter sp. CFSAN093259 chromosome, complete genome	2 crisprs	DEDDh,cas14j,cas2,cas1	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040617_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040617_1

1378659-1378738

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040617_1

>merge|NZ_CP040617|1|1378659-1378738|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP040617|1|1|1378659-1378738|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040617.1\|WP_002855339.1\|1378258_1378585_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP040617.1\|WP_002780453.1\|1376627_1377626_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP040617.1\|WP_002855429.1\|1380532_1381069_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP040617.1\|WP_002890768.1\|1384384_1385569_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP040617.1\|WP_002903881.1\|1385565_1387635_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP040617.1\|WP_002890766.1\|1383190_1384312_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040617.1\|WP_002779147.1\|1370370_1370595_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP040617.1\|WP_002780456.1\|1373926_1374751_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP040617.1\|WP_002890764.1\|1381832_1383194_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP040617.1\|WP_002855518.1\|1381416_1381836_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040617.1\|WP_002865443.1\|1370591_1372433_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP040617.1\|WP_002825806.1\|1381068_1381416_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP040617.1\|WP_002852383.1\|1379040_1380411_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP040617.1\|WP_002903876.1\|1372429_1373923_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP040617.1\|WP_002818256.1\|1387631_1388144_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498
NZ_CP040617.1\|WP_002855470.1\|1377685_1378231_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP040617.1\|WP_002875234.1\|1388133_1388895_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224134
NZ_CP040617.1\|WP_002855528.1\|1374754_1375426_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP040617.1\|WP_002855324.1\|1375422_1376625_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP040617.1\|WP_002857989.1\|1367574_1368942_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469

Protein	Function_ID	Function_description	E-value
NZ_CP040617.1\|WP_002855339.1\|1378258_1378585_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP040617.1\|WP_002780453.1\|1376627_1377626_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NZ_CP040617.1\|WP_002855429.1\|1380532_1381069_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NZ_CP040617.1\|WP_002890768.1\|1384384_1385569_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP040617.1\|WP_002903881.1\|1385565_1387635_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP040617.1\|WP_002818256.1\|1387631_1388144_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.09566e-100
NZ_CP040617.1\|WP_002779147.1\|1370370_1370595_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP040617.1\|WP_002780456.1\|1373926_1374751_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP040617.1\|WP_002890764.1\|1381832_1383194_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.49806e-79
NZ_CP040617.1\|WP_002865443.1\|1370591_1372433_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP040617.1\|WP_002825806.1\|1381068_1381416_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NZ_CP040617.1\|WP_002852383.1\|1379040_1380411_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP040617.1\|WP_002903876.1\|1372429_1373923_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	4.03495e-157
NZ_CP040617.1\|WP_002855470.1\|1377685_1378231_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.16494e-57
NZ_CP040617.1\|WP_002875234.1\|1388133_1388895_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	5.48264e-74
NZ_CP040617.1\|WP_002855528.1\|1374754_1375426_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NZ_CP040617.1\|WP_002855324.1\|1375422_1376625_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP040617.1\|WP_002857989.1\|1367574_1368942_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0

>NZ_CP040617.1|WP_002855339.1|1378258_1378585_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP040617.1|WP_002855470.1|1377685_1378231_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVILEALEKLDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP040617.1|WP_002780453.1|1376627_1377626_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP040617.1|WP_002855324.1|1375422_1376625_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP040617.1|WP_002855528.1|1374754_1375426_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP040617.1|WP_002780456.1|1373926_1374751_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP040617.1|WP_002903876.1|1372429_1373923_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQNFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKTFGDNITKISSLKAS
>NZ_CP040617.1|WP_002865443.1|1370591_1372433_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NZ_CP040617.1|WP_002779147.1|1370370_1370595_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP040617.1|WP_002857989.1|1367574_1368942_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NZ_CP040617.1|WP_002852383.1|1379040_1380411_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NZ_CP040617.1|WP_002855429.1|1380532_1381069_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP040617.1|WP_002825806.1|1381068_1381416_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP040617.1|WP_002855518.1|1381416_1381836_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK
>NZ_CP040617.1|WP_002890764.1|1381832_1383194_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP040617.1|WP_002890766.1|1383190_1384312_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKVDLSKIEKNEQFPFFQISCEGVQTTYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVVAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP040617.1|WP_002890768.1|1384384_1385569_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP040617.1|WP_002903881.1|1385565_1387635_-|capsular-polysaccharide-biosynthesis-protein
MKHYSISKKLIANVRNFYTISLYKKNSKINKDDLFLGWGRKKSGLKAINLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATAPSKLENLLNTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKGFKTVDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITENFNPVALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYVAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEIIFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINVKTGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVAGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP040617.1|WP_002818256.1|1387631_1388144_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NZ_CP040617.1|WP_002875234.1|1388133_1388895_-|NTP-transferase-domain-containing-protein
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNEVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYGMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

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Crispr_ID: NZ_CP040617_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040617_2

1502439-1502672

Unclear

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder

3 spacers

cas2,cas1

The CRISPR arrays of NZ_CP040617_2

>merge|NZ_CP040617|2|1502439-1502672|CRT,PILER-CR,CRISPRCasFinder
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTAGTAGCTAAGAATAAAATAAGAAACACTGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGTTGGAATGCTTAAGCAGGGGTGGAGTGAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGTTAAAAGGATTTTGCTTTGCGATTGGGAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP040617|2|1|1502439-1502672|CRT
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAGTAGCTAAGAATAAAATAAGAAACACTG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTTGGAATGCTTAAGCAGGGGTGGAGTGAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTTAAAAGGATTTTGCTTTGCGATTGGGAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP040617|2|1|1502440-1502672|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAGTAGCTAAGAATAAAATAAGAAACACTGG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTTGGAATGCTTAAGCAGGGGTGGAGTGAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTTAAAAGGATTTTGCTTTGCGATTGGGAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP040617|2|2|1502440-1502672|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAGTAGCTAAGAATAAAATAAGAAACACTGG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTTGGAATGCTTAAGCAGGGGTGGAGTGAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTTAAAAGGATTTTGCTTTGCGATTGGGAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040617.1\|WP_002876343.1\|1507298_1507481_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182621
NZ_CP040617.1\|WP_002851546.1\|1512979_1513429_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP040617.1\|WP_002851537.1\|1496458_1496650_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP040617.1\|WP_002876340.1\|1502816_1503248_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP040617.1\|WP_002855462.1\|1513558_1514779_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NZ_CP040617.1\|WP_002819068.1\|1503240_1504131_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP040617.1\|WP_002851155.1\|1511877_1512915_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP040617.1\|WP_002781229.1\|1500678_1501125_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP040617.1\|WP_002890120.1\|1509823_1510429_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP040617.1\|WP_002779488.1\|1500456_1500678_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP040617.1\|WP_079005335.1\|1496624_1497338_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP040617.1\|WP_002876348.1\|1510425_1511175_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP040617.1\|WP_002851407.1\|1511149_1511881_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NZ_CP040617.1\|WP_002851174.1\|1492087_1493020_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP040617.1\|WP_002858151.1\|1501128_1502319_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP040617.1\|WP_002858431.1\|1497641_1498790_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP040617.1\|WP_002868028.1\|1498913_1500455_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP040617.1\|WP_002876346.1\|1508773_1509763_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP040617.1\|WP_010891941.1\|1493654_1496459_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP040617.1\|WP_002851264.1\|1493016_1493658_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893

Protein	Function_ID	Function_description	E-value
NZ_CP040617.1\|WP_002876343.1\|1507298_1507481_+\|hypothetical-protein	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	0.000391506
NZ_CP040617.1\|WP_002851546.1\|1512979_1513429_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP040617.1\|WP_002851537.1\|1496458_1496650_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP040617.1\|WP_002876340.1\|1502816_1503248_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	8.44618e-59
NZ_CP040617.1\|WP_002855462.1\|1513558_1514779_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP040617.1\|WP_002819068.1\|1503240_1504131_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.92431e-121
NZ_CP040617.1\|WP_002851155.1\|1511877_1512915_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NZ_CP040617.1\|WP_002781229.1\|1500678_1501125_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP040617.1\|WP_002890120.1\|1509823_1510429_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.96096e-68
NZ_CP040617.1\|WP_002779488.1\|1500456_1500678_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP040617.1\|WP_079005335.1\|1496624_1497338_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000778983
NZ_CP040617.1\|WP_002876348.1\|1510425_1511175_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.04959e-92
NZ_CP040617.1\|WP_002851407.1\|1511149_1511881_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
NZ_CP040617.1\|WP_002851174.1\|1492087_1493020_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NZ_CP040617.1\|WP_002858151.1\|1501128_1502319_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_CP040617.1\|WP_002858431.1\|1497641_1498790_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP040617.1\|WP_002868028.1\|1498913_1500455_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.19169e-120
NZ_CP040617.1\|WP_002876346.1\|1508773_1509763_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP040617.1\|WP_010891941.1\|1493654_1496459_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP040617.1\|WP_002851264.1\|1493016_1493658_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57

>NZ_CP040617.1|WP_002858151.1|1501128_1502319_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP040617.1|WP_002781229.1|1500678_1501125_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP040617.1|WP_002779488.1|1500456_1500678_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP040617.1|WP_002868028.1|1498913_1500455_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP040617.1|WP_002858431.1|1497641_1498790_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP040617.1|WP_079005335.1|1496624_1497338_-|molecular-chaperone-TorD-family-protein
MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP040617.1|WP_002851537.1|1496458_1496650_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP040617.1|WP_010891941.1|1493654_1496459_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP040617.1|WP_002851264.1|1493016_1493658_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP040617.1|WP_002851174.1|1492087_1493020_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP040617.1|WP_002876340.1|1502816_1503248_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNVTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP040617.1|WP_002819068.1|1503240_1504131_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP040617.1|WP_002876343.1|1507298_1507481_+|hypothetical-protein
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKTPSREYTSF
>NZ_CP040617.1|WP_002876346.1|1508773_1509763_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP040617.1|WP_002890120.1|1509823_1510429_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLDFKSISADKIAHKILDENALELEKIFSPFSLKNLLTKEKKIDRKILGKIVFNNKEAKKILENFTHPKIRAKILEQIQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP040617.1|WP_002876348.1|1510425_1511175_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NZ_CP040617.1|WP_002851407.1|1511149_1511881_+|glucosaminidase-domain-containing-protein
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP040617.1|WP_002851155.1|1511877_1512915_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP040617.1|WP_002851546.1|1512979_1513429_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP040617.1|WP_002855462.1|1513558_1514779_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040617_2	2.1\|1502475\|30\|NZ_CP040617\|CRT	1502475-1502504	30	MN530981	Campylobacter phage DA10, complete genome	20527-20556	1	0.967
NZ_CP040617_2	2.4\|1502475\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502475-1502505	31	MN530981	Campylobacter phage DA10, complete genome	20526-20556	1	0.968
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	NC_041859	Flavobacterium phage 23T, complete genome	19232-19261	2	0.933
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	KU599889	Flavobacterium phage 1H, complete genome	18331-18360	2	0.933
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	NC_031926	Flavobacterium phage 2A, complete genome	22247-22276	2	0.933
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	MK764450	Flavobacterium phage FPSV-D35, complete genome	1910-1939	2	0.933
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	KC959568	Flavobacterium phage 6H, complete genome	21375-21404	2	0.933
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	MK764437	Flavobacterium phage FPSV-D15, complete genome	39283-39312	2	0.933
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	MK764440	Flavobacterium phage FPSV-F7, complete genome	15976-16005	2	0.933
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	MK764437	Flavobacterium phage FPSV-D15, complete genome	39283-39313	2	0.935
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	MK764440	Flavobacterium phage FPSV-F7, complete genome	15976-16006	2	0.935
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	NC_041859	Flavobacterium phage 23T, complete genome	19231-19261	2	0.935
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	KU599889	Flavobacterium phage 1H, complete genome	18330-18360	2	0.935
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	NC_031926	Flavobacterium phage 2A, complete genome	22246-22276	2	0.935
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	MK764450	Flavobacterium phage FPSV-D35, complete genome	1909-1939	2	0.935
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	KC959568	Flavobacterium phage 6H, complete genome	21374-21404	2	0.935
NZ_CP040617_2	2.1\|1502475\|30\|NZ_CP040617\|CRT	1502475-1502504	30	MT774379	CrAssphage cr118_1, complete genome	84169-84198	7	0.767
NZ_CP040617_2	2.1\|1502475\|30\|NZ_CP040617\|CRT	1502475-1502504	30	JF974298	Methylophilales phage HIM624-A, * SEQUENCING IN PROGRESS *, 5 unordered pieces	13735-13764	7	0.767
NZ_CP040617_2	2.1\|1502475\|30\|NZ_CP040617\|CRT	1502475-1502504	30	MT074146	Bacteroides phage SJC03, complete genome	132713-132742	7	0.767
NZ_CP040617_2	2.4\|1502475\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502475-1502505	31	MT774379	CrAssphage cr118_1, complete genome	84169-84199	7	0.774
NZ_CP040617_2	2.4\|1502475\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502475-1502505	31	JF974298	Methylophilales phage HIM624-A, * SEQUENCING IN PROGRESS *, 5 unordered pieces	13735-13765	7	0.774
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	AP014494	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C46-MedDCM-OCT-S46-C77, * SEQUENCING IN PROGRESS *, 4 ordered pieces	31892-31921	8	0.733
NZ_CP040617_2	2.3\|1502607\|30\|NZ_CP040617\|CRT	1502607-1502636	30	MN693357	Marine virus AFVG_25M390, complete genome	22622-22651	9	0.7
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	AP014494	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C46-MedDCM-OCT-S46-C77, * SEQUENCING IN PROGRESS *, 4 ordered pieces	31892-31922	9	0.71
NZ_CP040617_1	1.1\|1378682\|34\|NZ_CP040617\|CRISPRCasFinder	1378682-1378715	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706
NZ_CP040617_2	2.1\|1502475\|30\|NZ_CP040617\|CRT	1502475-1502504	30	MN693600	Marine virus AFVG_25M483, complete genome	8561-8590	10	0.667
NZ_CP040617_2	2.1\|1502475\|30\|NZ_CP040617\|CRT	1502475-1502504	30	MN693098	Marine virus AFVG_25M144, complete genome	23771-23800	10	0.667
NZ_CP040617_2	2.6\|1502607\|31\|NZ_CP040617\|PILER-CR,CRISPRCasFinder	1502607-1502637	31	MN693357	Marine virus AFVG_25M390, complete genome	22621-22651	10	0.677

1. spacer 2.1|1502475|30|NZ_CP040617|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

tagtagctaagaataaaataagaaacactg	CRISPR spacer
tagtggctaagaataaaataagaaacactg	Protospacer
****.*************************

2. spacer 2.4|1502475|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

tagtagctaagaataaaataagaaacactgg	CRISPR spacer
tagtggctaagaataaaataagaaacactgg	Protospacer
****.**************************

3. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to NC_041859 (Flavobacterium phage 23T, complete genome) position: , mismatch: 2, identity: 0.933

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
gttaaaaggattttgctttgtgattgggag	Protospacer
********************.********.

4. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to KU599889 (Flavobacterium phage 1H, complete genome) position: , mismatch: 2, identity: 0.933

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
gttaaaaggattttgctttgtgattgggag	Protospacer
********************.********.

5. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to NC_031926 (Flavobacterium phage 2A, complete genome) position: , mismatch: 2, identity: 0.933

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
gttaaaaggattttgctttgtgattgggag	Protospacer
********************.********.

6. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to MK764450 (Flavobacterium phage FPSV-D35, complete genome) position: , mismatch: 2, identity: 0.933

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
gttaaaaggattttgctttgtgattgggag	Protospacer
********************.********.

7. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to KC959568 (Flavobacterium phage 6H, complete genome) position: , mismatch: 2, identity: 0.933

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
gttaaaaggattttgctttgtgattgggag	Protospacer
********************.********.

8. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to MK764437 (Flavobacterium phage FPSV-D15, complete genome) position: , mismatch: 2, identity: 0.933

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
gttaaaaggattttgctttgtgattgggag	Protospacer
********************.********.

9. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to MK764440 (Flavobacterium phage FPSV-F7, complete genome) position: , mismatch: 2, identity: 0.933

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
gttaaaaggattttgctttgtgattgggag	Protospacer
********************.********.

10. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to MK764437 (Flavobacterium phage FPSV-D15, complete genome) position: , mismatch: 2, identity: 0.935

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
gttaaaaggattttgctttgtgattgggagg	Protospacer
********************.********.*

11. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to MK764440 (Flavobacterium phage FPSV-F7, complete genome) position: , mismatch: 2, identity: 0.935

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
gttaaaaggattttgctttgtgattgggagg	Protospacer
********************.********.*

12. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to NC_041859 (Flavobacterium phage 23T, complete genome) position: , mismatch: 2, identity: 0.935

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
gttaaaaggattttgctttgtgattgggagg	Protospacer
********************.********.*

13. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to KU599889 (Flavobacterium phage 1H, complete genome) position: , mismatch: 2, identity: 0.935

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
gttaaaaggattttgctttgtgattgggagg	Protospacer
********************.********.*

14. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to NC_031926 (Flavobacterium phage 2A, complete genome) position: , mismatch: 2, identity: 0.935

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
gttaaaaggattttgctttgtgattgggagg	Protospacer
********************.********.*

15. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to MK764450 (Flavobacterium phage FPSV-D35, complete genome) position: , mismatch: 2, identity: 0.935

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
gttaaaaggattttgctttgtgattgggagg	Protospacer
********************.********.*

16. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to KC959568 (Flavobacterium phage 6H, complete genome) position: , mismatch: 2, identity: 0.935

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
gttaaaaggattttgctttgtgattgggagg	Protospacer
********************.********.*

17. spacer 2.1|1502475|30|NZ_CP040617|CRT matches to MT774379 (CrAssphage cr118_1, complete genome) position: , mismatch: 7, identity: 0.767

tagtagctaagaataaaataagaaacactg	CRISPR spacer
gcatagctaagaatataataagaaaatcta	Protospacer
  .************ *********  **.

18. spacer 2.1|1502475|30|NZ_CP040617|CRT matches to JF974298 (Methylophilales phage HIM624-A, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 7, identity: 0.767

tagtagctaagaataaaataagaaacactg	CRISPR spacer
tagtaactaagaataaattaagaggttcag	Protospacer
*****.*********** *****... * *

19. spacer 2.1|1502475|30|NZ_CP040617|CRT matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 7, identity: 0.767

tagtagctaagaataaaataagaaacactg	CRISPR spacer
tattttaaaagaataaaataaaaaacactc	Protospacer
** *    *************.*******

20. spacer 2.4|1502475|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to MT774379 (CrAssphage cr118_1, complete genome) position: , mismatch: 7, identity: 0.774

tagtagctaagaataaaataagaaacactgg	CRISPR spacer
gcatagctaagaatataataagaaaatctag	Protospacer
  .************ *********  **.*

21. spacer 2.4|1502475|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to JF974298 (Methylophilales phage HIM624-A, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 7, identity: 0.774

tagtagctaagaataaaataagaaacactgg	CRISPR spacer
tagtaactaagaataaattaagaggttcagg	Protospacer
*****.*********** *****... * **

22. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to AP014494 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C46-MedDCM-OCT-S46-C77, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 8, identity: 0.733

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
ttcaaaaggatttttctttgccattgccgc	Protospacer
 *.*********** ****** ****  .

23. spacer 2.3|1502607|30|NZ_CP040617|CRT matches to MN693357 (Marine virus AFVG_25M390, complete genome) position: , mismatch: 9, identity: 0.7

gttaaaaggattttgctttgcgattgggaa	CRISPR spacer
agtaaaaggtttttgctttgctattttact	Protospacer
. ******* *********** ***  .

24. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to AP014494 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C46-MedDCM-OCT-S46-C77, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 9, identity: 0.71

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
ttcaaaaggatttttctttgccattgccgca	Protospacer
 *.*********** ****** ****  . .

25. spacer 1.1|1378682|34|NZ_CP040617|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

26. spacer 2.1|1502475|30|NZ_CP040617|CRT matches to MN693600 (Marine virus AFVG_25M483, complete genome) position: , mismatch: 10, identity: 0.667

tagtagctaagaataaaataagaaacactg	CRISPR spacer
tagtagcaaagaataaaataaactgtgaca	Protospacer
******* *************.  ... ..

27. spacer 2.1|1502475|30|NZ_CP040617|CRT matches to MN693098 (Marine virus AFVG_25M144, complete genome) position: , mismatch: 10, identity: 0.667

tagtagctaagaataaaataagaaacactg	CRISPR spacer
tagtagcaaagaataaaataaactgtgaca	Protospacer
******* *************.  ... ..

28. spacer 2.6|1502607|31|NZ_CP040617|PILER-CR,CRISPRCasFinder matches to MN693357 (Marine virus AFVG_25M390, complete genome) position: , mismatch: 10, identity: 0.677

gttaaaaggattttgctttgcgattgggaag	CRISPR spacer
agtaaaaggtttttgctttgctattttactt	Protospacer
. ******* *********** ***  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

505351 : 578457

Campylobacter_phage(47.37%)

tail,integrase,tRNA,terminase,transposase,plate,capsid

attL 525036:525054|attR 586920:586938

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052792835.1\|505351_506650_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_020837007.1\|506633_508343_+\|tRNA	proline--tRNA ligase	A0A2I2L3K8	Orpheovirus	5.2e-07	24.1
WP_002854991.1\|508339_508729_+	FxsA family protein	NA	NA	NA	NA
WP_002820769.1\|508725_509649_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_002867682.1\|509645_511448_+	menaquinone biosynthesis decarboxylase	NA	NA	NA	NA
WP_002858519.1\|511604_511970_+	flagellar protein FlaG	NA	NA	NA	NA
WP_002884515.1\|511972_513904_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_002776169.1\|513915_514302_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_002776186.1\|514282_514558_+	hypothetical protein	NA	NA	NA	NA
WP_002890292.1\|514989_515559_+	elongation factor P	NA	NA	NA	NA
WP_002856730.1\|515718_516411_+	DUF969 domain-containing protein	NA	NA	NA	NA
WP_002858607.1\|516397_517351_+	DUF979 domain-containing protein	NA	NA	NA	NA
WP_002890294.1\|517360_518365_+	DUF2891 domain-containing protein	NA	NA	NA	NA
WP_168952599.1\|518483_519776_+	SLC13 family permease	NA	NA	NA	NA
WP_002825067.1\|519786_520584_+	amidohydrolase	NA	NA	NA	NA
WP_002890302.1\|520580_521666_-	FUSC family protein	NA	NA	NA	NA
WP_002890303.1\|521662_522895_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.4e-78	40.4
WP_002890304.1\|522965_523901_+	NAD(P)-binding domain-containing protein	A0A2K9L162	Tupanvirus	1.2e-05	26.2
WP_002890305.1\|524081_525410_+	MATE family efflux transporter	NA	NA	NA	NA
525036:525054	attL	NA	NA	NA	NA
WP_002890306.1\|525457_526387_-	DUF2860 domain-containing protein	NA	NA	NA	NA
WP_002887667.1\|526540_527917_+	replicative DNA helicase	A0A077SK18	Escherichia_phage	3.3e-68	36.2
WP_079263766.1\|527979_528582_+	hypothetical protein	NA	NA	NA	NA
WP_002858584.1\|528572_528779_+	membrane protein	NA	NA	NA	NA
WP_100221710.1\|528858_528924_+	DUF3944 domain-containing protein	NA	NA	NA	NA
WP_002858615.1\|529307_529586_+	hypothetical protein	NA	NA	NA	NA
WP_032598961.1\|530605_531070_+	hypothetical protein	NA	NA	NA	NA
WP_002865392.1\|531395_531677_+	hypothetical protein	NA	NA	NA	NA
WP_002852065.1\|531682_532552_+	hypothetical protein	NA	NA	NA	NA
WP_002852192.1\|532560_533628_+	ATP-binding protein	NA	NA	NA	NA
WP_002878902.1\|534731_535361_+	LexA family transcriptional regulator	A7YG70	Campylobacter_phage	1.3e-59	99.1
WP_002865000.1\|535441_535762_+	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_002843339.1\|535771_535966_+	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865266.1\|536045_536333_+	hypothetical protein	A7YGI8	Campylobacter_phage	6.6e-48	100.0
WP_025985917.1\|536362_537178_-	DNA adenine methylase	A7YGW6	Campylobacter_phage	2.4e-151	99.6
WP_002865380.1\|537379_537868_-	phage virion morphogenesis protein	A7YGE7	Campylobacter_phage	2.0e-89	100.0
WP_168952600.1\|537871_540088_-\|tail	phage tail tape measure protein	A7YGX1	Campylobacter_phage	0.0e+00	99.7
WP_002865378.1\|540129_540435_+	hypothetical protein	A7YGX3	Campylobacter_phage	2.7e-39	100.0
WP_002873740.1\|540546_540786_-\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	9.4e-24	93.8
WP_002865376.1\|540938_541448_-\|tail	tail protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_002878906.1\|541474_542668_-\|tail	tail sheath protein	A7YGT4	Campylobacter_phage	1.2e-196	98.2
WP_002878907.1\|542686_543694_-	hypothetical protein	A7YGZ7	Campylobacter_phage	6.5e-191	99.7
WP_002878908.1\|543690_544077_-	DUF1353 domain-containing protein	A7YGA5	Campylobacter_phage	1.2e-65	97.5
WP_002878909.1\|544073_544580_-	DUF4376 domain-containing protein	A7YGK2	Campylobacter_phage	2.0e-87	100.0
WP_002896214.1\|544604_545636_-\|tail	phage tail protein	A7YGF9	Campylobacter_phage	3.1e-188	99.1
WP_002878911.1\|545635_546256_-\|tail	phage tail protein I	A7YH02	Campylobacter_phage	2.8e-59	96.6
WP_002878912.1\|546252_547419_-\|plate	baseplate J/gp47 family protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002795239.1\|547415_547706_-	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002795238.1\|547702_547894_-	hypothetical protein	NA	NA	NA	NA
WP_002827116.1\|547902_548535_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	4.6e-09	35.6
WP_002784492.1\|548534_548849_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|548960_549209_-	hypothetical protein	NA	NA	NA	NA
WP_002865466.1\|549205_549547_-	hypothetical protein	NA	NA	NA	NA
WP_002878913.1\|549557_549947_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	6.5e-22	46.3
WP_002784501.1\|550094_550529_+	hypothetical protein	NA	NA	NA	NA
WP_002865468.1\|550530_551346_+	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002784505.1\|551348_551876_+	hypothetical protein	NA	NA	NA	NA
WP_002865469.1\|551878_552856_+\|capsid	major capsid protein	R9TRN2	Rhizobium_phage	3.3e-06	23.4
WP_002855185.1\|552972_553431_+	DUF1320 family protein	NA	NA	NA	NA
WP_002803360.1\|553423_554023_+	DUF1804 family protein	NA	NA	NA	NA
WP_002865471.1\|554022_555693_+\|terminase	phage terminase large subunit	A0A0A1IW02	Pseudomonas_phage	8.0e-93	41.6
WP_002865472.1\|555702_557079_+	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	1.9e-15	26.2
WP_002865473.1\|557080_558319_+	hypothetical protein	A0A0A1IX74	Pseudomonas_phage	9.6e-19	28.4
WP_002784519.1\|558443_558818_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002784520.1\|558810_559002_+\|tail	tail protein	NA	NA	NA	NA
WP_002855003.1\|558995_559973_+\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_168952601.1\|559969_560875_-	hypothetical protein	NA	NA	NA	NA
WP_002865476.1\|560840_561047_-	CJH_07325 family protein	S5VYW8	Campylobacter_phage	2.4e-07	47.0
WP_043012815.1\|561168_561453_-	DNA-binding protein	NA	NA	NA	NA
WP_002852234.1\|561546_562218_+	endonuclease	NA	NA	NA	NA
WP_002795452.1\|562209_562485_-	hypothetical protein	NA	NA	NA	NA
WP_002865478.1\|562531_562981_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002878916.1\|562977_563670_-	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|563669_563939_-	hypothetical protein	NA	NA	NA	NA
WP_002878917.1\|563935_564898_-	hypothetical protein	NA	NA	NA	NA
WP_002791413.1\|565009_565396_-	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
WP_002791414.1\|565392_565665_-	hypothetical protein	NA	NA	NA	NA
WP_002791416.1\|565728_565908_-	hypothetical protein	NA	NA	NA	NA
WP_168952602.1\|565904_566390_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	1.2e-17	33.3
WP_002791419.1\|566496_566838_-	hypothetical protein	NA	NA	NA	NA
WP_002824157.1\|566894_567080_-	hypothetical protein	NA	NA	NA	NA
WP_002795448.1\|567076_567268_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002806833.1\|567270_568194_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_002878918.1\|568264_570340_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002826948.1\|570336_570537_-	hypothetical protein	NA	NA	NA	NA
WP_002791430.1\|570686_571361_+	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	1.4e-24	32.3
WP_168952603.1\|571360_572062_+	hypothetical protein	NA	NA	NA	NA
WP_002852104.1\|572824_573844_+	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-59	36.7
WP_002852081.1\|573855_574299_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	7.7e-11	34.0
WP_002852093.1\|574316_576017_+	acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	2.2e-53	28.9
WP_002852211.1\|576013_576478_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002852180.1\|576474_577440_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_002852279.1\|577428_578457_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
586920:586938	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1408403 : 1418646

Tupanvirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002917584.1\|1408403_1409744_+	long-chain fatty acid--CoA ligase	A0A2K9L3I8	Tupanvirus	3.8e-05	25.6
WP_002890917.1\|1411642_1412308_-	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	2.4e-08	27.2
WP_002890914.1\|1412295_1412901_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.8e-15	34.4
WP_002917287.1\|1412888_1413908_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	1.2e-59	41.3
WP_002917288.1\|1413904_1414936_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.1e-144	72.1
WP_002890912.1\|1414944_1415985_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	4.8e-64	40.8
WP_079460764.1\|1415977_1417165_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	1.4e-78	42.9
WP_002889995.1\|1417168_1418098_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_002889981.1\|1418100_1418646_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D7XFA9	Escherichia_phage	1.1e-14	30.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040617

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection