CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040608	Campylobacter sp. CFSAN093226 chromosome, complete genome	2 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	0	8	2	0
NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040608_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040608_1

1342222-1342301

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040608_1

>merge|NZ_CP040608|1|1342222-1342301|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTGCTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP040608|1|1|1342222-1342301|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTGCTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040608.1\|WP_002780442.1\|1344093_1344630_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP040608.1\|WP_002857891.1\|1349126_1351196_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP040608.1\|WP_002780449.1\|1341247_1341793_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP040608.1\|WP_002857981.1\|1347945_1349130_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP040608.1\|WP_002855528.1\|1338316_1338988_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP040608.1\|WP_002857939.1\|1344629_1344977_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP040608.1\|WP_002780456.1\|1337488_1338313_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP040608.1\|WP_002858238.1\|1341820_1342147_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP040608.1\|WP_002780440.1\|1344977_1345397_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040608.1\|WP_002858455.1\|1335991_1337485_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP040608.1\|WP_002865443.1\|1334153_1335995_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP040608.1\|WP_168940580.1\|1331134_1332502_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469
NZ_CP040608.1\|WP_002858404.1\|1351694_1352456_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224134
NZ_CP040608.1\|WP_002858304.1\|1346751_1347873_-\|membrane-protein	unknown	unknown	unknown
NZ_CP040608.1\|WP_002858462.1\|1351192_1351705_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498
NZ_CP040608.1\|WP_010891933.1\|1342602_1343991_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP040608.1\|WP_002780438.1\|1345393_1346755_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP040608.1\|WP_002855324.1\|1338984_1340187_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP040608.1\|WP_002779147.1\|1333932_1334157_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP040608.1\|WP_002780453.1\|1340189_1341188_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135

Protein	Function_ID	Function_description	E-value
NZ_CP040608.1\|WP_002780442.1\|1344093_1344630_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.30474e-91
NZ_CP040608.1\|WP_002857891.1\|1349126_1351196_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP040608.1\|WP_002780449.1\|1341247_1341793_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.69536e-59
NZ_CP040608.1\|WP_002855528.1\|1338316_1338988_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NZ_CP040608.1\|WP_002857939.1\|1344629_1344977_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	7.85738e-40
NZ_CP040608.1\|WP_002780456.1\|1337488_1338313_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP040608.1\|WP_002858238.1\|1341820_1342147_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.85906e-37
NZ_CP040608.1\|WP_002858455.1\|1335991_1337485_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.777e-157
NZ_CP040608.1\|WP_002865443.1\|1334153_1335995_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP040608.1\|WP_168940580.1\|1331134_1332502_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NZ_CP040608.1\|WP_002858404.1\|1351694_1352456_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.82934e-76
NZ_CP040608.1\|WP_002857981.1\|1347945_1349130_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP040608.1\|WP_002858462.1\|1351192_1351705_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.00012e-100
NZ_CP040608.1\|WP_010891933.1\|1342602_1343991_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP040608.1\|WP_002780438.1\|1345393_1346755_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NZ_CP040608.1\|WP_002855324.1\|1338984_1340187_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP040608.1\|WP_002779147.1\|1333932_1334157_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP040608.1\|WP_002780453.1\|1340189_1341188_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168

>NZ_CP040608.1|WP_002858238.1|1341820_1342147_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP040608.1|WP_002780449.1|1341247_1341793_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP040608.1|WP_002780453.1|1340189_1341188_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP040608.1|WP_002855324.1|1338984_1340187_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP040608.1|WP_002855528.1|1338316_1338988_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP040608.1|WP_002780456.1|1337488_1338313_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP040608.1|WP_002858455.1|1335991_1337485_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIVAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS
>NZ_CP040608.1|WP_002865443.1|1334153_1335995_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NZ_CP040608.1|WP_002779147.1|1333932_1334157_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP040608.1|WP_168940580.1|1331134_1332502_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLGILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NZ_CP040608.1|WP_010891933.1|1342602_1343991_-|phosphoglucosamine-mutase-PgmL
MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNRGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDIKARFKN
>NZ_CP040608.1|WP_002780442.1|1344093_1344630_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP040608.1|WP_002857939.1|1344629_1344977_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLNPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NZ_CP040608.1|WP_002780440.1|1344977_1345397_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP040608.1|WP_002780438.1|1345393_1346755_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP040608.1|WP_002858304.1|1346751_1347873_-|membrane-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP040608.1|WP_002857981.1|1347945_1349130_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYFKLINDLSRKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYNFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP040608.1|WP_002857891.1|1349126_1351196_-|capsular-polysaccharide-biosynthesis-protein
MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKRHFIKPFFKAKDNEIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRIRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP040608.1|WP_002858462.1|1351192_1351705_-|adenylyl-sulfate-kinase
MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NZ_CP040608.1|WP_002858404.1|1351694_1352456_-|NTP-transferase-domain-containing-protein
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWCKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK

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Crispr_ID: NZ_CP040608_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040608_2

1457944-1458244

orTypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	CRT

4 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP040608_2

>merge|NZ_CP040608|2|1457944-1458244|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTCCAAAGTTTCATTAGTTGAATTTAACTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTAAAGAGGAAATTATTTGGAATAAAAGAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTAAAAAAGAGTTTTCCCTTGTAATGTTGTGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATCGTATTTTAATTTAAGTCCATTTTTTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP040608|2|1|1457944-1458243|PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTAAAGAGGAAATTATTTGGAATAAAAGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAAAAAAGAGTTTTCCCTTGTAATGTTGTG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATCGTATTTTAATTTAAGTCCATTTTTTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP040608|2|2|1457944-1458243|CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTAAAGAGGAAATTATTTGGAATAAAAGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAAAAAAGAGTTTTCCCTTGTAATGTTGTG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATCGTATTTTAATTTAAGTCCATTTTTTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP040608|2|1|1457944-1458244|CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	TTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	TTAAAGAGGAAATTATTTGGAATAAAAGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	AAAAAAGAGTTTTCCCTTGTAATGTTGTG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	ATCGTATTTTAATTTAAGTCCATTTTTTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040608.1\|WP_002851320.1\|1464322_1465312_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP040608.1\|WP_002855462.1\|1469107_1470328_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NZ_CP040608.1\|WP_010891941.1\|1449159_1451964_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP040608.1\|WP_002851537.1\|1451963_1452155_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP040608.1\|WP_002851546.1\|1468528_1468978_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP040608.1\|WP_002851155.1\|1467426_1468464_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP040608.1\|WP_002797817.1\|1458387_1458819_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP040608.1\|WP_002858431.1\|1453146_1454295_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP040608.1\|WP_002858151.1\|1456633_1457824_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP040608.1\|WP_002858205.1\|1454418_1455960_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP040608.1\|WP_002851502.1\|1452129_1452843_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP040608.1\|WP_002858341.1\|1459698_1462653_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP040608.1\|WP_002857949.1\|1455961_1456183_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP040608.1\|WP_002851407.1\|1466698_1467430_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NZ_CP040608.1\|WP_002851173.1\|1465974_1466724_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP040608.1\|WP_002851264.1\|1448521_1449163_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP040608.1\|WP_002851174.1\|1447592_1448525_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP040608.1\|WP_002851523.1\|1465372_1465978_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP040608.1\|WP_002781229.1\|1456183_1456630_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP040608.1\|WP_002797819.1\|1458811_1459702_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
NZ_CP040608.1\|WP_002851320.1\|1464322_1465312_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP040608.1\|WP_002855462.1\|1469107_1470328_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP040608.1\|WP_010891941.1\|1449159_1451964_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP040608.1\|WP_002851537.1\|1451963_1452155_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP040608.1\|WP_002851546.1\|1468528_1468978_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP040608.1\|WP_002851155.1\|1467426_1468464_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NZ_CP040608.1\|WP_002797817.1\|1458387_1458819_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
NZ_CP040608.1\|WP_002858431.1\|1453146_1454295_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP040608.1\|WP_002858151.1\|1456633_1457824_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_CP040608.1\|WP_002858205.1\|1454418_1455960_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.73566e-121
NZ_CP040608.1\|WP_002851502.1\|1452129_1452843_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP040608.1\|WP_002858341.1\|1459698_1462653_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP040608.1\|WP_002857949.1\|1455961_1456183_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.76562e-11
NZ_CP040608.1\|WP_002851407.1\|1466698_1467430_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
NZ_CP040608.1\|WP_002851173.1\|1465974_1466724_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.97072e-93
NZ_CP040608.1\|WP_002851264.1\|1448521_1449163_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP040608.1\|WP_002851174.1\|1447592_1448525_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NZ_CP040608.1\|WP_002851523.1\|1465372_1465978_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.24929e-70
NZ_CP040608.1\|WP_002781229.1\|1456183_1456630_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP040608.1\|WP_002797819.1\|1458811_1459702_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121

>NZ_CP040608.1|WP_002858151.1|1456633_1457824_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP040608.1|WP_002781229.1|1456183_1456630_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP040608.1|WP_002857949.1|1455961_1456183_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFNENTKLKDGDKIALLPPVCGG
>NZ_CP040608.1|WP_002858205.1|1454418_1455960_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP040608.1|WP_002858431.1|1453146_1454295_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP040608.1|WP_002851502.1|1452129_1452843_-|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP040608.1|WP_002851537.1|1451963_1452155_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP040608.1|WP_010891941.1|1449159_1451964_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP040608.1|WP_002851264.1|1448521_1449163_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP040608.1|WP_002851174.1|1447592_1448525_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP040608.1|WP_002797817.1|1458387_1458819_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP040608.1|WP_002797819.1|1458811_1459702_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP040608.1|WP_002858341.1|1459698_1462653_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MVRILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP040608.1|WP_002851320.1|1464322_1465312_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NZ_CP040608.1|WP_002851523.1|1465372_1465978_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM
>NZ_CP040608.1|WP_002851173.1|1465974_1466724_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NZ_CP040608.1|WP_002851407.1|1466698_1467430_+|glucosaminidase-domain-containing-protein
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP040608.1|WP_002851155.1|1467426_1468464_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP040608.1|WP_002851546.1|1468528_1468978_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP040608.1|WP_002855462.1|1469107_1470328_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040608_2	2.1\|1457980\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1457980-1458009	30	MN530981	Campylobacter phage DA10, complete genome	33283-33312	0	1.0
NZ_CP040608_2	2.4\|1458178\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458178-1458207	30	MN530981	Campylobacter phage DA10, complete genome	4822-4851	0	1.0
NZ_CP040608_2	2.5\|1457981\|29\|NZ_CP040608\|CRT	1457981-1458009	29	MN530981	Campylobacter phage DA10, complete genome	33284-33312	0	1.0
NZ_CP040608_2	2.8\|1458179\|29\|NZ_CP040608\|CRT	1458179-1458207	29	MN530981	Campylobacter phage DA10, complete genome	4823-4851	0	1.0
NZ_CP040608_2	2.2\|1458046\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458046-1458075	30	MN530981	Campylobacter phage DA10, complete genome	22364-22393	2	0.933
NZ_CP040608_2	2.6\|1458047\|29\|NZ_CP040608\|CRT	1458047-1458075	29	MN530981	Campylobacter phage DA10, complete genome	22364-22392	2	0.931
NZ_CP040608_2	2.3\|1458112\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458112-1458141	30	MN530981	Campylobacter phage DA10, complete genome	30036-30065	4	0.867
NZ_CP040608_2	2.7\|1458113\|29\|NZ_CP040608\|CRT	1458113-1458141	29	MN530981	Campylobacter phage DA10, complete genome	30037-30065	4	0.862
NZ_CP040608_2	2.2\|1458046\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458046-1458075	30	KY744233	Sulfolobus islandicus rod-shaped virus 5, partial genome	26744-26773	5	0.833
NZ_CP040608_2	2.2\|1458046\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458046-1458075	30	KY744235	Sulfolobus islandicus rod-shaped virus 6, partial genome	26105-26134	5	0.833
NZ_CP040608_2	2.2\|1458046\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458046-1458075	30	KY744234	Sulfolobus islandicus rod-shaped virus 11, partial genome	24294-24323	5	0.833
NZ_CP040608_2	2.2\|1458046\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458046-1458075	30	KY744232	Sulfolobus islandicus rod-shaped virus 7, partial genome	26147-26176	5	0.833
NZ_CP040608_2	2.4\|1458178\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458178-1458207	30	NZ_AP018256	Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome	387040-387069	5	0.833
NZ_CP040608_2	2.6\|1458047\|29\|NZ_CP040608\|CRT	1458047-1458075	29	KY744233	Sulfolobus islandicus rod-shaped virus 5, partial genome	26745-26773	5	0.828
NZ_CP040608_2	2.6\|1458047\|29\|NZ_CP040608\|CRT	1458047-1458075	29	KY744235	Sulfolobus islandicus rod-shaped virus 6, partial genome	26106-26134	5	0.828
NZ_CP040608_2	2.6\|1458047\|29\|NZ_CP040608\|CRT	1458047-1458075	29	KY744234	Sulfolobus islandicus rod-shaped virus 11, partial genome	24295-24323	5	0.828
NZ_CP040608_2	2.6\|1458047\|29\|NZ_CP040608\|CRT	1458047-1458075	29	KY744232	Sulfolobus islandicus rod-shaped virus 7, partial genome	26148-26176	5	0.828
NZ_CP040608_2	2.8\|1458179\|29\|NZ_CP040608\|CRT	1458179-1458207	29	MH617389	Microviridae sp. isolate ctbh645, complete genome	4353-4381	5	0.828
NZ_CP040608_2	2.4\|1458178\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458178-1458207	30	MH617389	Microviridae sp. isolate ctbh645, complete genome	4352-4381	6	0.8
NZ_CP040608_2	2.6\|1458047\|29\|NZ_CP040608\|CRT	1458047-1458075	29	NZ_CP010326	Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence	56487-56515	6	0.793
NZ_CP040608_2	2.8\|1458179\|29\|NZ_CP040608\|CRT	1458179-1458207	29	NZ_LR214942	Mycoplasma orale strain NCTC10112 plasmid 3	1146-1174	6	0.793
NZ_CP040608_2	2.8\|1458179\|29\|NZ_CP040608\|CRT	1458179-1458207	29	NZ_LR214943	Mycoplasma orale strain NCTC10112 plasmid 4	6419-6447	6	0.793
NZ_CP040608_2	2.8\|1458179\|29\|NZ_CP040608\|CRT	1458179-1458207	29	NZ_CP029733	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed5, complete sequence	71925-71953	6	0.793
NZ_CP040608_2	2.2\|1458046\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458046-1458075	30	NZ_CP010326	Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence	56487-56516	7	0.767
NZ_CP040608_2	2.4\|1458178\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458178-1458207	30	NZ_CP029733	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed5, complete sequence	71925-71954	7	0.767
NZ_CP040608_2	2.4\|1458178\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458178-1458207	30	NZ_LR214942	Mycoplasma orale strain NCTC10112 plasmid 3	1145-1174	7	0.767
NZ_CP040608_2	2.4\|1458178\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458178-1458207	30	NZ_LR214943	Mycoplasma orale strain NCTC10112 plasmid 4	6418-6447	7	0.767
NZ_CP040608_2	2.5\|1457981\|29\|NZ_CP040608\|CRT	1457981-1458009	29	MG602477	Bacillus phage BCP01, complete genome	154165-154193	7	0.759
NZ_CP040608_2	2.5\|1457981\|29\|NZ_CP040608\|CRT	1457981-1458009	29	KX495186	Bacillus phage PK16, complete genome	23957-23985	7	0.759
NZ_CP040608_2	2.7\|1458113\|29\|NZ_CP040608\|CRT	1458113-1458141	29	NZ_CP014849	Bacillus thuringiensis strain HD12 plasmid pHD120038, complete sequence	5776-5804	7	0.759
NZ_CP040608_2	2.8\|1458179\|29\|NZ_CP040608\|CRT	1458179-1458207	29	NZ_AP018256	Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome	387040-387068	7	0.759
NZ_CP040608_2	2.8\|1458179\|29\|NZ_CP040608\|CRT	1458179-1458207	29	JQ660954	Clostridium phage PhiS63, complete genome	18094-18122	7	0.759
NZ_CP040608_2	2.1\|1457980\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1457980-1458009	30	MG602477	Bacillus phage BCP01, complete genome	154164-154193	8	0.733
NZ_CP040608_2	2.1\|1457980\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1457980-1458009	30	KX495186	Bacillus phage PK16, complete genome	23957-23986	8	0.733
NZ_CP040608_2	2.3\|1458112\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458112-1458141	30	NZ_CP014849	Bacillus thuringiensis strain HD12 plasmid pHD120038, complete sequence	5776-5805	8	0.733
NZ_CP040608_2	2.4\|1458178\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458178-1458207	30	JQ660954	Clostridium phage PhiS63, complete genome	18094-18123	8	0.733
NZ_CP040608_2	2.7\|1458113\|29\|NZ_CP040608\|CRT	1458113-1458141	29	KT372714	Bacillus phage vB_BtS_BMBtp16, complete genome	11597-11625	8	0.724
NZ_CP040608_2	2.3\|1458112\|30\|NZ_CP040608\|PILER-CR,CRISPRCasFinder	1458112-1458141	30	KT372714	Bacillus phage vB_BtS_BMBtp16, complete genome	11597-11626	9	0.7

1. spacer 2.1|1457980|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaact	CRISPR spacer
tttccaaagtttcattagttgaatttaact	Protospacer
******************************

2. spacer 2.4|1458178|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatcgtattttaatttaagtccattttttt	CRISPR spacer
tatcgtattttaatttaagtccattttttt	Protospacer
******************************

3. spacer 2.5|1457981|29|NZ_CP040608|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ttccaaagtttcattagttgaatttaact	CRISPR spacer
ttccaaagtttcattagttgaatttaact	Protospacer
*****************************

4. spacer 2.8|1458179|29|NZ_CP040608|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atcgtattttaatttaagtccattttttt	CRISPR spacer
atcgtattttaatttaagtccattttttt	Protospacer
*****************************

5. spacer 2.2|1458046|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

tttaaagaggaaattatttggaataaaaga	CRISPR spacer
tttaaagaggaaattatttggaataaaaag	Protospacer
****************************..

6. spacer 2.6|1458047|29|NZ_CP040608|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.931

ttaaagaggaaattatttggaataaaaga	CRISPR spacer
ttaaagaggaaattatttggaataaaaag	Protospacer
***************************..

7. spacer 2.3|1458112|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 4, identity: 0.867

taaaaaagagttttcccttgtaatgttgtg	CRISPR spacer
taataaagaggtttcccttgtaatgttgca	Protospacer
*** ****** *****************..

8. spacer 2.7|1458113|29|NZ_CP040608|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 4, identity: 0.862

aaaaaagagttttcccttgtaatgttgtg	CRISPR spacer
aataaagaggtttcccttgtaatgttgca	Protospacer
** ****** *****************..

9. spacer 2.2|1458046|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to KY744233 (Sulfolobus islandicus rod-shaped virus 5, partial genome) position: , mismatch: 5, identity: 0.833

tttaaagaggaaattatttggaataaaaga	CRISPR spacer
tttaaagataaaattatttggaatgagaca	Protospacer
******** .**************.*.* *

10. spacer 2.2|1458046|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to KY744235 (Sulfolobus islandicus rod-shaped virus 6, partial genome) position: , mismatch: 5, identity: 0.833

tttaaagaggaaattatttggaataaaaga	CRISPR spacer
tttaaagataaaattatttggaatgagaca	Protospacer
******** .**************.*.* *

11. spacer 2.2|1458046|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to KY744234 (Sulfolobus islandicus rod-shaped virus 11, partial genome) position: , mismatch: 5, identity: 0.833

tttaaagaggaaattatttggaataaaaga	CRISPR spacer
tttaaagataaaattatttggaatgagaca	Protospacer
******** .**************.*.* *

12. spacer 2.2|1458046|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to KY744232 (Sulfolobus islandicus rod-shaped virus 7, partial genome) position: , mismatch: 5, identity: 0.833

tttaaagaggaaattatttggaataaaaga	CRISPR spacer
tttaaagataaaattatttggaatgagaca	Protospacer
******** .**************.*.* *

13. spacer 2.4|1458178|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to NZ_AP018256 (Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome) position: , mismatch: 5, identity: 0.833

-tatcgtattttaatttaagtccattttttt	CRISPR spacer
ctatt-tatttaaatttaattccatttttta	Protospacer
 ***. ***** ******* **********

14. spacer 2.6|1458047|29|NZ_CP040608|CRT matches to KY744233 (Sulfolobus islandicus rod-shaped virus 5, partial genome) position: , mismatch: 5, identity: 0.828

ttaaagaggaaattatttggaataaaaga	CRISPR spacer
ttaaagataaaattatttggaatgagaca	Protospacer
******* .**************.*.* *

15. spacer 2.6|1458047|29|NZ_CP040608|CRT matches to KY744235 (Sulfolobus islandicus rod-shaped virus 6, partial genome) position: , mismatch: 5, identity: 0.828

ttaaagaggaaattatttggaataaaaga	CRISPR spacer
ttaaagataaaattatttggaatgagaca	Protospacer
******* .**************.*.* *

16. spacer 2.6|1458047|29|NZ_CP040608|CRT matches to KY744234 (Sulfolobus islandicus rod-shaped virus 11, partial genome) position: , mismatch: 5, identity: 0.828

ttaaagaggaaattatttggaataaaaga	CRISPR spacer
ttaaagataaaattatttggaatgagaca	Protospacer
******* .**************.*.* *

17. spacer 2.6|1458047|29|NZ_CP040608|CRT matches to KY744232 (Sulfolobus islandicus rod-shaped virus 7, partial genome) position: , mismatch: 5, identity: 0.828

ttaaagaggaaattatttggaataaaaga	CRISPR spacer
ttaaagataaaattatttggaatgagaca	Protospacer
******* .**************.*.* *

18. spacer 2.8|1458179|29|NZ_CP040608|CRT matches to MH617389 (Microviridae sp. isolate ctbh645, complete genome) position: , mismatch: 5, identity: 0.828

atcgtattttaatttaagtccattttttt	CRISPR spacer
tttttattttaatttaagtttattttttt	Protospacer
 *. ***************..********

19. spacer 2.4|1458178|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to MH617389 (Microviridae sp. isolate ctbh645, complete genome) position: , mismatch: 6, identity: 0.8

tatcgtattttaatttaagtccattttttt	CRISPR spacer
atttttattttaatttaagtttattttttt	Protospacer
  *. ***************..********

20. spacer 2.6|1458047|29|NZ_CP040608|CRT matches to NZ_CP010326 (Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence) position: , mismatch: 6, identity: 0.793

ttaaagaggaaattatttggaataaaaga	CRISPR spacer
tccatcaggaaattatttagaaaaaaaga	Protospacer
*. *  ************.*** ******

21. spacer 2.8|1458179|29|NZ_CP040608|CRT matches to NZ_LR214942 (Mycoplasma orale strain NCTC10112 plasmid 3) position: , mismatch: 6, identity: 0.793

atcgtattttaatttaagtccattttttt	CRISPR spacer
aattttttttaatttgagtccaatttttt	Protospacer
* . * *********.****** ******

22. spacer 2.8|1458179|29|NZ_CP040608|CRT matches to NZ_LR214943 (Mycoplasma orale strain NCTC10112 plasmid 4) position: , mismatch: 6, identity: 0.793

atcgtattttaatttaagtccattttttt	CRISPR spacer
aattttttttaatttgagtccaatttttt	Protospacer
* . * *********.****** ******

23. spacer 2.8|1458179|29|NZ_CP040608|CRT matches to NZ_CP029733 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.793

-atcgtattttaatttaagtccattttttt	CRISPR spacer
catta-gttttaatttaagtgcattttatt	Protospacer
 **.. .************* ****** **

24. spacer 2.2|1458046|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to NZ_CP010326 (Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence) position: , mismatch: 7, identity: 0.767

tttaaagaggaaattatttggaataaaaga	CRISPR spacer
ctccatcaggaaattatttagaaaaaaaga	Protospacer
.*. *  ************.*** ******

25. spacer 2.4|1458178|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to NZ_CP029733 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

-tatcgtattttaatttaagtccattttttt	CRISPR spacer
ccatta-gttttaatttaagtgcattttatt	Protospacer
 .**.. .************* ****** **

26. spacer 2.4|1458178|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to NZ_LR214942 (Mycoplasma orale strain NCTC10112 plasmid 3) position: , mismatch: 7, identity: 0.767

tatcgtattttaatttaagtccattttttt	CRISPR spacer
caattttttttaatttgagtccaatttttt	Protospacer
.* . * *********.****** ******

27. spacer 2.4|1458178|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to NZ_LR214943 (Mycoplasma orale strain NCTC10112 plasmid 4) position: , mismatch: 7, identity: 0.767

tatcgtattttaatttaagtccattttttt	CRISPR spacer
caattttttttaatttgagtccaatttttt	Protospacer
.* . * *********.****** ******

28. spacer 2.5|1457981|29|NZ_CP040608|CRT matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 7, identity: 0.759

ttccaaagtttcattagttgaatttaact	CRISPR spacer
taataaagtttcattagaagaatttaaaa	Protospacer
*  .*************  ********

29. spacer 2.5|1457981|29|NZ_CP040608|CRT matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 7, identity: 0.759

ttccaaagtttcattagttgaatttaact	CRISPR spacer
taataaagtttcattagaagaatttaaaa	Protospacer
*  .*************  ********

30. spacer 2.7|1458113|29|NZ_CP040608|CRT matches to NZ_CP014849 (Bacillus thuringiensis strain HD12 plasmid pHD120038, complete sequence) position: , mismatch: 7, identity: 0.759

aaaaaagagttttcccttgtaatgttgtg	CRISPR spacer
aaaaaagtgttttcccttgtaataaccaa	Protospacer
******* ***************. .  .

31. spacer 2.8|1458179|29|NZ_CP040608|CRT matches to NZ_AP018256 (Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome) position: , mismatch: 7, identity: 0.759

atcgtattttaatttaagtccattttttt	CRISPR spacer
tatttatttaaatttaattccatttttta	Protospacer
  . ***** ******* **********

32. spacer 2.8|1458179|29|NZ_CP040608|CRT matches to JQ660954 (Clostridium phage PhiS63, complete genome) position: , mismatch: 7, identity: 0.759

atcgtattttaatttaagtccattttttt	CRISPR spacer
agattgatttgatttaagtccatttttta	Protospacer
*   *. ***.*****************

33. spacer 2.1|1457980|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********

34. spacer 2.1|1457980|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********

35. spacer 2.3|1458112|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to NZ_CP014849 (Bacillus thuringiensis strain HD12 plasmid pHD120038, complete sequence) position: , mismatch: 8, identity: 0.733

taaaaaagagttttcccttgtaatgttgtg	CRISPR spacer
aaaaaaagtgttttcccttgtaataaccaa	Protospacer
 ******* ***************. .  .

36. spacer 2.4|1458178|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to JQ660954 (Clostridium phage PhiS63, complete genome) position: , mismatch: 8, identity: 0.733

tatcgtattttaatttaagtccattttttt	CRISPR spacer
aagattgatttgatttaagtccatttttta	Protospacer
 *   *. ***.*****************

37. spacer 2.7|1458113|29|NZ_CP040608|CRT matches to KT372714 (Bacillus phage vB_BtS_BMBtp16, complete genome) position: , mismatch: 8, identity: 0.724

aaaaaagagttttcccttgtaatgttgtg	CRISPR spacer
aaaagagtgttttcccttgtaataaccaa	Protospacer
****.** ***************. .  .

38. spacer 2.3|1458112|30|NZ_CP040608|PILER-CR,CRISPRCasFinder matches to KT372714 (Bacillus phage vB_BtS_BMBtp16, complete genome) position: , mismatch: 9, identity: 0.7

taaaaaagagttttcccttgtaatgttgtg	CRISPR spacer
aaaaagagtgttttcccttgtaataaccaa	Protospacer
 ****.** ***************. .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1360880 : 1367516

Tupanvirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002857908.1\|1360880_1361546_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
WP_002857991.1\|1361533_1362139_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
WP_002858413.1\|1362126_1363146_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
WP_002857889.1\|1363165_1364017_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_002858299.1\|1364035_1364977_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
WP_002864205.1\|1365000_1366041_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.7e-69	44.4
WP_002864204.1\|1366040_1366967_-	hypothetical protein	NA	NA	NA	NA
WP_002858190.1\|1366970_1367516_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4

DBSCAN-SWA_2

1602813 : 1638848

Campylobacter_phage(100.0%)

capsid,tail,head,terminase,protease,portal,integrase

attL 1628918:1628936|attR 1643161:1643179

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002788257.1\|1602813_1603104_+	hypothetical protein	X2KM44	Campylobacter_phage	2.6e-15	97.4
WP_002869973.1\|1603090_1603441_+	HNH endonuclease	X2KRF8	Campylobacter_phage	1.9e-65	100.0
WP_002913306.1\|1603691_1604330_+\|terminase	P27 family phage terminase small subunit	X2KXE9	Campylobacter_phage	1.9e-111	100.0
WP_002913304.1\|1604333_1605959_+\|terminase	terminase large subunit	X2KQ40	Campylobacter_phage	0.0e+00	100.0
WP_002913302.1\|1606013_1606448_+	type II toxin-antitoxin system PemK/MazF family toxin	X2KLV2	Campylobacter_phage	2.4e-78	100.0
WP_002788272.1\|1606607_1607780_+\|portal	phage portal protein	X2KR48	Campylobacter_phage	3.1e-216	100.0
WP_002800770.1\|1607776_1608319_+	HK97 gp10 family phage protein	X2KRF4	Campylobacter_phage	5.7e-93	100.0
WP_002788276.1\|1608319_1608670_+	hypothetical protein	X2KXE7	Campylobacter_phage	7.3e-57	100.0
WP_002869971.1\|1608657_1608921_-	type II toxin-antitoxin system RelE/ParE family toxin	X2KQ37	Campylobacter_phage	2.9e-34	100.0
WP_002869970.1\|1608917_1609142_-	hypothetical protein	X2KLV0	Campylobacter_phage	5.7e-31	100.0
WP_002788279.1\|1609288_1610269_+	hypothetical protein	X2KR44	Campylobacter_phage	3.9e-180	100.0
WP_002788281.1\|1610265_1610622_+	hypothetical protein	X2KRE9	Campylobacter_phage	1.8e-58	100.0
WP_002788282.1\|1610702_1610918_+	hypothetical protein	X2KXE3	Campylobacter_phage	2.2e-32	100.0
WP_002788283.1\|1610909_1611248_-	hypothetical protein	X2KLU6	Campylobacter_phage	1.6e-56	100.0
WP_168940582.1\|1611307_1617007_+	hypothetical protein	X2KR41	Campylobacter_phage	0.0e+00	99.9
WP_002788286.1\|1617019_1617889_+	hypothetical protein	X2KRE5	Campylobacter_phage	3.9e-168	100.0
WP_002788287.1\|1617974_1618532_+\|head,protease	HK97 family phage prohead protease	X2KXE1	Campylobacter_phage	1.1e-96	100.0
WP_002788288.1\|1618548_1619715_+\|capsid	phage major capsid protein	X2KQ31	Campylobacter_phage	2.8e-214	100.0
WP_002788291.1\|1619725_1619977_+	hypothetical protein	X2KLU2	Campylobacter_phage	3.7e-18	100.0
WP_002788293.1\|1619973_1620411_+\|head,tail	phage gp6-like head-tail connector protein	X2KR38	Campylobacter_phage	1.8e-76	100.0
WP_002788295.1\|1620423_1620741_+\|head,tail	head-tail adaptor protein	X2KXD7	Campylobacter_phage	9.2e-51	100.0
WP_002869967.1\|1620737_1621370_+	hypothetical protein	X2KQ29	Campylobacter_phage	6.0e-110	100.0
WP_011049933.1\|1621362_1622928_+	hypothetical protein	X2KLU0	Campylobacter_phage	3.3e-210	100.0
WP_002798141.1\|1622929_1623379_+	hypothetical protein	X2KR34	Campylobacter_phage	4.6e-80	100.0
WP_002789149.1\|1623391_1624027_+	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	1.3e-96	100.0
WP_002869963.1\|1624023_1624407_+	hypothetical protein	X2KXD5	Campylobacter_phage	2.4e-61	100.0
WP_019108750.1\|1624399_1624774_+	DUF1353 domain-containing protein	X2KQ25	Campylobacter_phage	1.2e-68	100.0
WP_002788854.1\|1624770_1626054_+	hypothetical protein	X2KLT6	Campylobacter_phage	1.6e-239	100.0
WP_002870260.1\|1626102_1626564_+	hypothetical protein	X2KRD2	Campylobacter_phage	1.4e-84	100.0
WP_002870261.1\|1626792_1627212_+	hypothetical protein	X2KXD3	Campylobacter_phage	2.9e-52	100.0
WP_002913413.1\|1627129_1627327_+	hypothetical protein	X2KQ22	Campylobacter_phage	4.4e-27	100.0
WP_002870263.1\|1627340_1627622_-	PLDc N-terminal domain-containing protein	X2KLT3	Campylobacter_phage	9.3e-47	100.0
WP_011049930.1\|1627638_1628292_-	DNA/RNA non-specific endonuclease	X2KR27	Campylobacter_phage	9.3e-122	100.0
WP_002870274.1\|1628297_1628960_-	S24/S26 family peptidase	X2KRC9	Campylobacter_phage	4.2e-122	100.0
1628918:1628936	attL	NA	NA	NA	NA
WP_002870336.1\|1629194_1629848_-	hypothetical protein	X2KXC9	Campylobacter_phage	1.2e-113	100.0
WP_002870299.1\|1630052_1630256_+	hypothetical protein	X2KQ19	Campylobacter_phage	4.8e-29	100.0
WP_002912332.1\|1630252_1630537_+	hypothetical protein	X2KLS8	Campylobacter_phage	4.5e-41	100.0
WP_011049928.1\|1630967_1631699_+	phage antirepressor KilAC domain-containing protein	X2KRC4	Campylobacter_phage	2.8e-127	100.0
WP_002787279.1\|1631751_1632039_+	hypothetical protein	X2KXC8	Campylobacter_phage	2.4e-50	100.0
WP_002787281.1\|1632095_1632359_+	hypothetical protein	X2KQ17	Campylobacter_phage	4.1e-44	100.0
WP_002787283.1\|1632324_1632555_+	hypothetical protein	X2KLS5	Campylobacter_phage	5.0e-38	100.0
WP_002787287.1\|1632692_1633460_+	hypothetical protein	X2KRC2	Campylobacter_phage	3.7e-138	100.0
WP_002787289.1\|1633473_1633710_+	hypothetical protein	X2KXC5	Campylobacter_phage	8.1e-36	100.0
WP_002787293.1\|1634097_1634418_+	hypothetical protein	X2KLS2	Campylobacter_phage	1.4e-51	100.0
WP_002787295.1\|1634496_1634811_+	hypothetical protein	X2KR17	Campylobacter_phage	1.6e-50	100.0
WP_002869676.1\|1634747_1635509_+	hypothetical protein	X2KQ45	Campylobacter_phage	4.0e-124	99.5
WP_011049924.1\|1635517_1635742_+	hypothetical protein	X2KXC3	Campylobacter_phage	4.1e-37	100.0
WP_002858334.1\|1635742_1636114_+	hypothetical protein	X2KQ09	Campylobacter_phage	1.2e-60	100.0
WP_002787304.1\|1636097_1636364_+	hypothetical protein	X2KLR9	Campylobacter_phage	4.7e-40	100.0
WP_002787306.1\|1636341_1637097_+	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	9.6e-147	100.0
WP_002787307.1\|1637114_1637468_+	hypothetical protein	X2KRB4	Campylobacter_phage	2.1e-56	100.0
WP_002787309.1\|1637469_1637676_+	helix-turn-helix domain-containing protein	X2KXB9	Campylobacter_phage	4.8e-32	100.0
WP_002787311.1\|1637672_1638848_-\|integrase	site-specific integrase	X2KXI6	Campylobacter_phage	1.7e-222	100.0
1643161:1643179	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040608

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection