CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP051548	Phytobacter diazotrophicus strain UAEU22 chromosome, complete genome	4 crisprs	WYL,cas3,DinG,RT,DEDDh,csa3	0	1	6	0
NZ_CP051549	Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1	0 crisprs	csa3,csx1	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP051548_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051548_1

1948615-1948688

Orphan

Consensus_repeat	Method
CTCGCCCTTCGGGTCGTCGCCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051548_1

>merge|NZ_CP051548|1|1948615-1948688|CRISPRCasFinder
CTCGCCCTTCGGGTCGTCGCCGCAAGCGGCTCCGTTGTCTCACTTCGCTACTCGCCCTTCGGGCCGTCGCCGCA

>NZ_CP051548|1|1|1948615-1948688|CRISPRCasFinder
CTCGCCCTTCGGGTCGTCGCCGCA	AGCGGCTCCGTTGTCTCACTTCGCTA
CTCGCCCTTCGGGCCGTCGCCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051548.1\|WP_039079751.1\|1954090_1955329_+\|Nramp-family-divalent-metal-transporter	unknown	unknown	gnl\|CDD\|234815
NZ_CP051548.1\|WP_079496194.1\|1951113_1951509_-\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|369180
NZ_CP051548.1\|WP_039079755.1\|1958378_1959344_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP051548.1\|WP_039079738.1\|1939805_1940063_-\|phosphocarrier-protein-Hpr	unknown	unknown	gnl\|CDD\|182777
NZ_CP051548.1\|WP_039079743.1\|1945627_1945843_+\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|226061
NZ_CP051548.1\|WP_071193714.1\|1943611_1945627_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP051548.1\|WP_039079749.1\|1951510_1951873_-\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|369180
NZ_CP051548.1\|WP_107223186.1\|1941558_1942320_-\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP051548.1\|WP_169039005.1\|1949652_1951068_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP051548.1\|WP_039079756.1\|1959340_1960069_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP051548.1\|WP_169039004.1\|1946918_1947848_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP051548.1\|WP_125124102.1\|1942499_1943540_+\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|235124
NZ_CP051548.1\|WP_079496195.1\|1955835_1956834_-\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381377
NZ_CP051548.1\|WP_039079737.1\|1938033_1939761_-\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
NZ_CP051548.1\|WP_107223183.1\|1947838_1948222_-\|FlxA-protein	unknown	unknown	gnl\|CDD\|379537
NZ_CP051548.1\|WP_039079744.1\|1945839_1946829_-\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NZ_CP051548.1\|WP_039079750.1\|1952551_1953739_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP051548.1\|WP_039079739.1\|1940445_1941417_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP051548.1\|WP_039079754.1\|1956940_1958173_-\|ion-channel-protein	unknown	unknown	gnl\|CDD\|235148
NZ_CP051548.1\|WP_039079752.1\|1955389_1955722_-\|DUF2502-domain-containing-protein	unknown	unknown	gnl\|CDD\|371199

Protein	Function_ID	Function_description	E-value
NZ_CP051548.1\|WP_039079751.1\|1954090_1955329_+\|Nramp-family-divalent-metal-transporter	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP051548.1\|WP_079496194.1\|1951113_1951509_-\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|369180	pfam07037, DUF1323, Putative transcription regulator (DUF1323). This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. This family appears to have an HTH domain and is therefore likely to act as a transcriptional regulator.	2.93732e-43
NZ_CP051548.1\|WP_039079755.1\|1958378_1959344_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	0
NZ_CP051548.1\|WP_039079738.1\|1939805_1940063_-\|phosphocarrier-protein-Hpr	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	2.21332e-42
NZ_CP051548.1\|WP_039079743.1\|1945627_1945843_+\|DUF3820-family-protein	gnl\|CDD\|226061	COG3530, COG3530, Uncharacterized protein conserved in bacteria [Function unknown].	1.67456e-31
NZ_CP051548.1\|WP_071193714.1\|1943611_1945627_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP051548.1\|WP_039079749.1\|1951510_1951873_-\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|369180	pfam07037, DUF1323, Putative transcription regulator (DUF1323). This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. This family appears to have an HTH domain and is therefore likely to act as a transcriptional regulator.	4.62582e-51
NZ_CP051548.1\|WP_107223186.1\|1941558_1942320_-\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	2.86262e-154
NZ_CP051548.1\|WP_169039005.1\|1949652_1951068_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP051548.1\|WP_039079756.1\|1959340_1960069_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	3.39781e-78
NZ_CP051548.1\|WP_169039004.1\|1946918_1947848_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.7855e-68
NZ_CP051548.1\|WP_125124102.1\|1942499_1943540_+\|cell-division-protein-ZipA	gnl\|CDD\|235124	PRK03427, PRK03427, cell division protein ZipA; Provisional.	0
NZ_CP051548.1\|WP_079496195.1\|1955835_1956834_-\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NZ_CP051548.1\|WP_039079737.1\|1938033_1939761_-\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
NZ_CP051548.1\|WP_107223183.1\|1947838_1948222_-\|FlxA-protein	gnl\|CDD\|379537	pfam14282, FlxA, FlxA-like protein. This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation.	0.00192487
NZ_CP051548.1\|WP_039079744.1\|1945839_1946829_-\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	4.19913e-123
NZ_CP051548.1\|WP_039079750.1\|1952551_1953739_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	7.20063e-159
NZ_CP051548.1\|WP_039079739.1\|1940445_1941417_-\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	0
NZ_CP051548.1\|WP_039079754.1\|1956940_1958173_-\|ion-channel-protein	gnl\|CDD\|235148	PRK03655, PRK03655, putative ion channel protein; Provisional.	0
NZ_CP051548.1\|WP_039079752.1\|1955389_1955722_-\|DUF2502-domain-containing-protein	gnl\|CDD\|371199	pfam10697, DUF2502, Protein of unknown function (DUF2502). Members of this family are all Gammaproteobacteria. The function is not known.	4.27231e-14

>NZ_CP051548.1|WP_107223183.1|1947838_1948222_-|FlxA-protein
MTTIQATTSTVISSSISGGKSSTSSTGGSSSSNSDIASQISNIMQQISKLSQQLKDLATSGSADADSQKQRELLQAEIKQLQAQLAQLEYKQAEEAQKKNDEKQSQSAVKPEGVNTPSDNNQIDIYI
>NZ_CP051548.1|WP_169039004.1|1946918_1947848_+|LysR-family-transcriptional-regulator
MNYSLRQLRVFVTVAHARSFSRAGDIIGLSQSAVSHSVKELELQTGVRLLDRTTREVVLTEAGQQLAARLERLLEELNDTLRDAGRVGQQLSGTVRVAASQTISAHLIPQCIAQSNRLYPEIDFMLHDRPQQWVLESIRHGEVDFGIVIDPGPVSDLQCEEILEEPFFLLCRHDHAWATSQTIPWSALQDSRLVVQDYASGSRPLIDAALAQFGITAAIVQEIGHPATLFPMVEAGIGISIMPALALPLPQGSQLCVKRLKPEIKRKIMLVQRKNRSLSGAAQAIWDVVREQALCLNQAREEDPLFHQM
>NZ_CP051548.1|WP_039079744.1|1945839_1946829_-|bile-acid:sodium-symporter
MKLFRVLDPFTLTLVCTVLLATFFPARGGFVPFFEGLTTAAIALLFFMHGAKLSREAIIAGGSHWRLHLWVMCSTFILFPVLGVLFVWWSPVNVSQELYTGFLYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFLSPLLVGLLMNLHGADGSLEQVGKIMLQLLLPFVLGHLSRRWTGAWVARNKKWISKTDQTSILLVVYSAFSEAVVNGIWHKVGVGSLLFIVVFSMVLLAIVIAINIFAARKLGFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEKLQAQETAKA
>NZ_CP051548.1|WP_039079743.1|1945627_1945843_+|DUF3820-family-protein
MEKEQLIEIANTEMPFGKYQGRKLIDLPEEYLLWFARKDSFPAGHLGELMQLALLIKTEGLAHLVQPLKRR
>NZ_CP051548.1|WP_071193714.1|1943611_1945627_+|NAD-dependent-DNA-ligase-LigA
MESIEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLLRELRELEAQHPDLITPDSPTQRVGAAPLASFSQVRHEIPMLSLDNVFDEQSFLAFNKRVQDRLKSTDALIYCCELKLDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLRFKEWGLPVSDRVTLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPDGTREVVFPAHCPVCGSDVERVEGEAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALESAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGKVVAAHVFNFFAEESNRDVIGQLLAEGVRWPAPVVVNAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMLRLLGA
>NZ_CP051548.1|WP_125124102.1|1942499_1943540_+|cell-division-protein-ZipA
MSKCLPCWQGVRTTENIMMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRMKSRRDDDDAYDEDVEEDDDSVGEVRVHRVNAPPKAGSEPEAPRQQPQHQYQPPYASAQPRATAAPARHEERQAQPSAQPAQRAPQVEPQQPVQEPREREFAQPVAPAQPQQPAFTAAQPSHHEPVAQPEPEPEHIEEAPVAEKPQRKETVIIMNVAAHQGSALQGELLLNSIQQVGFKFGDMSIFHRHLSPDGSGPTLFSLANMVNPGTFDPERMSELTTPGITMFMQVPSYGDELQNFKLMLQAAQYIADEVGGVVLDDQRRMMTPQKLREYQDRIREVRDANA
>NZ_CP051548.1|WP_107223186.1|1941558_1942320_-|sulfate-transporter-CysZ
MVSSSPTSSRSGVFYFSQGWKLITLPGIRRFVILPLLVNIILMGGAFAWLFTRLDNWIPALMSHVPDWLQWLSYLLWPIAVVSILLVFSYFFSTIANWIAAPFNGLLAEQLEARLTGATPPDAGVSAIIKDIPRIMKREWQKLAWYLPRALVLLLLYFIPGIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRVALRTRKVTNMQFGALTSLFTLIPVLNLVVMPVAVCGATAMWVDCYREKNAAWR
>NZ_CP051548.1|WP_039079739.1|1940445_1941417_-|cysteine-synthase-A
MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGIELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPSKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVSRYIKGTKGKSDLITVAVEPTDSPVISQALAGEELKPGPHKIQGIGAGFIPGNLDLKLIDKVVKITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDETFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ
>NZ_CP051548.1|WP_039079738.1|1939805_1940063_-|phosphocarrier-protein-Hpr
MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTLTAEGEDEQKAVEHLVKLMAELE
>NZ_CP051548.1|WP_039079737.1|1938033_1939761_-|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGILASPGIAFGKALLLKEDEIVIDRKKISADKVDQEVERFLSGRAKASAQLEAIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQATALEELDDEYLKERAADVRDIGKRLLRNILCMPIIDLSAIQDEVILVAADLTPSETAQLNLNKVLGFITDMGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNKVYVNPTEQEVETLRNTQAQVAEEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVAGAERNGAEGVGLYRTEFLFMDRESLPTEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAVRIAMDRKEILRDQVRAILRASAFGKLRIMFPMIISVEEVRALKKEIEIYKQELRDEGKAFDETIEVGVMVETPAAATIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLTLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVNKFIEEKTIC
>NZ_CP051548.1|WP_169039005.1|1949652_1951068_+|glutamate--tRNA-ligase
MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHDGEFVLRIEDTDLERSTPEAIEAIMDGMNWLNLEWDEGPYFQTKRFDRYNAVIDEMLEAGTAYKCYCSKERLEALREEQMAKGEKPRYDGRCRHSHEHHAADEPCVVRFANPQDGSVIFDDQIRGPIEFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMQITHVIRGEDHINNTPRQINILKALNAPVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSSGDQEIFSREEMIKLFSLGAVSKSASAFNTDKLLWLNHHYINTLAPEYVATHLQWHIEQENIDTRNGPQLADLVKLLGERCKTLKEIAVSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVRDKLAALTDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGKSRSIERINKALDFIAERESQQ
>NZ_CP051548.1|WP_079496194.1|1951113_1951509_-|putative-DNA-binding-transcriptional-regulator
MKLPDKMTTEELADFLGVAKQTVNRWIREQKWSTENLPGVKGGRARLIHIDKNVRHFIMKTPTMRQRHSPASLAEPFPHYEADKQTSALLKINGVLQNMTPLEQERLVVLLAREGIQGFLQRLGITAIDAE
>NZ_CP051548.1|WP_039079749.1|1951510_1951873_-|putative-DNA-binding-transcriptional-regulator
MLKERMTPEELAKLTGYSRQTINKWVRKEGWVTSPKPGVQGGKARLVHVNEQVREFIRNAQRSAHEITFSSLTAKDPTLETLLLTLAKEMTMPEQKQLSSLLLRDGITGLLSRLGIREQK
>NZ_CP051548.1|WP_039079750.1|1952551_1953739_-|NupC/NupG-family-nucleoside-CNT-transporter
MSRVLHFVLALAVVALLALLVSSDRKKIRIRFVVQLLVIEVLLAWFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGKMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPIIIRAIGTVLSKINGMGKLESFNAVSSLILGQSENFIAYKDILGKMSRNRMYTMAATAMSTVSMSIVGAYMTMLQPKYVVAALVLNMFSTFIVLSLINPYRVDESEENLQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALISGLNALFAAILGISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIASSLSPRAEGILSVFLVSFANFSSIGIIAGAIKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL
>NZ_CP051548.1|WP_039079751.1|1954090_1955329_+|Nramp-family-divalent-metal-transporter
MNNSRVESSSGRAARKLKLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQLLSAKLGIATGKNLAEQIRDHYPRPLVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELVFSRPELAPLSKGILIPSLPGTEAVFLAAGVLGATIMPHVIYLHSSLTQYLHEGTRRERYSATKWDVGIAMTIAGFVNLAMMATAAAAFHFNGHTGIADLDEAYLTLEPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRRTITMMPSFVVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDRGLMGELVNTPTVKRVGWLIVILVVALNGWLLVGTALGV
>NZ_CP051548.1|WP_039079752.1|1955389_1955722_-|DUF2502-domain-containing-protein
MFRSLILAAVLMACAPLVANAGEITLLPSVKLQIGDRDNYGNYWDGGRWRDRDYWHRNYEWRDHRWRMHDRGYHRGWDKRDAYERGYREGWNDRDDRRGPGRGHGHGHWR
>NZ_CP051548.1|WP_079496195.1|1955835_1956834_-|L-glyceraldehyde-3-phosphate-reductase
MVYLASGDRYQKMEFRRCGDSGIKLPAISLGLWHNFGDATLIENSRQLLRHAFDLGITHFDIANNYGPPPGSAERNFGRLLQEDFLPYRDELIISTKAGYTMWDGPYGDWGSRKYLIASLDQSLRRMGLDYVDIFYHHRPDPETPLKETMRALDHVVRQGKALYVGLSNYPADLARQAIEILNDLGTPCLIHQPKYSMFERWVEDELLTVLQQEGVGSIAFSPLAGGQLTDRYLNGIPADSRAASGSRFLNPDQITDEKLAKVRKLNDLAIARGQKLSQMALAWVLRGDKVTSVLIGASKTSQLDDAVGMLANRQFSEAECANIDAILNSAK
>NZ_CP051548.1|WP_039079754.1|1956940_1958173_-|ion-channel-protein
MLHPRARTMLLLALPALIIGVASSLVLLLVMKVAAVLQLILWNGLPYRLGFTPDSPFWVIMMLTLTGLAVGLVIRYSAGHGGPDPATEPLIGAPVHVSALPGLLVALVLGLAGGVSLGPEHPIMVLNIALAVALGGKLFPRVAPLDWTILASAGTIGALFGTPVAAALIFSQTLNSNTDLPLWDRLFAPLMAAAAGALTTGLFFHPHFALPVAHYPQMHLVDIISGAVVCAIAIALGMVAVWCLPRLHQLMHRLKSPVLMLGIGGFILGVLGVIGGNITLFKGLDEMQQMAFAQTFTVTDYLLFAVIKLAALVVAAACGFRGGRIFPAVFVGVALGLMLHEHVNAVPAAITISCAILGMVLVVTRDAWLSLFMAAAVVPDTSLLPLLCIVMLPAWLLLAGKPVMIAPRKK
>NZ_CP051548.1|WP_039079755.1|1958378_1959344_+|glucokinase
MTKYALVGDVGGTNARLALCDLSSGAISQAKTYSGLDYPSLEAVVRVYLDEHKAEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFAHLEIINDFTAVSMAVPMLKPEHLTQFGGGEPVEGKPIAVYGAGTGLGVSHLVHVDKRWVSLPGEGGHVDFAPNSEEEGIILEELRAEIGHVSAERVLSGPGLVNLYRAIVKSDGRLPENLQPKDVTERALADSCIDCRRALSLFCVIMGRFGGNLALNLGTFGGVYIAGGIVPRFLDFFTASGFRGGFEDKGRFKSYVQDIPVFLITHDNPGLLGAGAHLRQSLGYYL
>NZ_CP051548.1|WP_039079756.1|1959340_1960069_-|response-regulator-transcription-factor
MKVIIVEDEFLAQQELSWLIKTHSQMDIVGTFEDGLDVLKYLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIISMLQKLETAWQQQTGTSASPAPRENATINLVKDERIIVTSIHDIYYAEAHEKMTFVYTKRESYVMPMNITEFCSKLPAAHFFRCHRSYCVNLDKIREIEPWFNNTYIVRLRDLDFQVPVSRSKVKEFRQLMHL

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Crispr_ID: NZ_CP051548_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051548_2

2247663-2247763

Orphan

Consensus_repeat	Method
TGCGGAGAAAAACAAGCTGGTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051548_2

>merge|NZ_CP051548|2|2247663-2247763|CRISPRCasFinder
TGCGGAGAAAAACAAGCTGGTCTGGCTGACGCCAGCGCCTGCCAATAATACCTGGACTATCGCGGTACGCCAGGATGTTGCGCAGAAAAACAAGCTGGTCT

>NZ_CP051548|2|2|2247663-2247763|CRISPRCasFinder
TGCGGAGAAAAACAAGCTGGTCT	GGCTGACGCCAGCGCCTGCCAATAATACCTGGACTATCGCGGTACGCCAGGATGT
TGCGCAGAAAAACAAGCTGGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051548.1\|WP_165158278.1\|2248247_2249402_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224095
NZ_CP051548.1\|WP_041852010.1\|2249398_2250346_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP051548.1\|WP_079496303.1\|2254672_2255014_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|227024
NZ_CP051548.1\|WP_041852015.1\|2242290_2242845_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP051548.1\|WP_041852017.1\|2240592_2241180_+\|YIP1-family-protein	unknown	unknown	gnl\|CDD\|369140
NZ_CP051548.1\|WP_169039077.1\|2235537_2237397_+\|PTS-beta-glucoside-transporter-subunit-IIABC	unknown	unknown	gnl\|CDD\|236627
NZ_CP051548.1\|WP_041852007.1\|2252165_2253854_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP051548.1\|WP_041852003.1\|2255437_2255914_+\|DUF1456-family-protein	unknown	unknown	gnl\|CDD\|227144
NZ_CP051548.1\|WP_071195707.1\|2255010_2255355_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227893
NZ_CP051548.1\|WP_041852013.1\|2244863_2247161_+\|beta-glucosidase-BglX	unknown	unknown	gnl\|CDD\|185053
NZ_CP051548.1\|WP_041852008.1\|2251213_2251945_-\|HTH-type-transcriptional-regulator-MlrA	unknown	unknown	gnl\|CDD\|185003
NZ_CP051548.1\|WP_041852018.1\|2239831_2240413_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP051548.1\|WP_075203650.1\|2251041_2251155_-\|protein-YohO	unknown	unknown	gnl\|CDD\|184238
NZ_CP051548.1\|WP_125124185.1\|2242982_2244689_-\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|236872
NZ_CP051548.1\|WP_041852019.1\|2239057_2239831_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|237187
NZ_CP051548.1\|WP_041852009.1\|2250329_2251067_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP051548.1\|WP_071195698.1\|2241351_2242290_+\|D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|236952
NZ_CP051548.1\|WP_041852006.1\|2253847_2254567_+\|two-component-system-response-regulator-BtsR	unknown	unknown	gnl\|CDD\|236956
NZ_CP051548.1\|WP_169039078.1\|2237412_2238807_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP051548.1\|WP_041852022.1\|2234562_2235396_+\|transcriptional-antiterminator-BglG	unknown	unknown	gnl\|CDD\|170086

Protein	Function_ID	Function_description	E-value
NZ_CP051548.1\|WP_165158278.1\|2248247_2249402_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	1.76513e-66
NZ_CP051548.1\|WP_041852010.1\|2249398_2250346_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	2.47694e-172
NZ_CP051548.1\|WP_079496303.1\|2254672_2255014_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|227024	COG4679, COG4679, Phage-related protein [Function unknown].	1.12635e-33
NZ_CP051548.1\|WP_041852015.1\|2242290_2242845_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.44692e-55
NZ_CP051548.1\|WP_041852017.1\|2240592_2241180_+\|YIP1-family-protein	gnl\|CDD\|369140	pfam06930, DUF1282, Protein of unknown function (DUF1282). This family consists of several hypothetical proteins of around 200 residues in length. The function of this family is unknown although a number of family members are thought to be putative membrane proteins.	7.11001e-30
NZ_CP051548.1\|WP_169039077.1\|2235537_2237397_+\|PTS-beta-glucoside-transporter-subunit-IIABC	gnl\|CDD\|236627	PRK09824, PRK09824, PTS system beta-glucoside-specific transporter subunits IIABC; Provisional.	0
NZ_CP051548.1\|WP_041852007.1\|2252165_2253854_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_CP051548.1\|WP_041852003.1\|2255437_2255914_+\|DUF1456-family-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	1.37196e-82
NZ_CP051548.1\|WP_071195707.1\|2255010_2255355_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|227893	COG5606, COG5606, Uncharacterized conserved small protein [Function unknown].	2.49736e-17
NZ_CP051548.1\|WP_041852013.1\|2244863_2247161_+\|beta-glucosidase-BglX	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	0
NZ_CP051548.1\|WP_041852008.1\|2251213_2251945_-\|HTH-type-transcriptional-regulator-MlrA	gnl\|CDD\|185003	PRK15043, PRK15043, HTH-type transcriptional regulator MlrA.	1.04953e-144
NZ_CP051548.1\|WP_041852018.1\|2239831_2240413_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.19074e-45
NZ_CP051548.1\|WP_075203650.1\|2251041_2251155_-\|protein-YohO	gnl\|CDD\|184238	PRK13681, PRK13681, protein YohO.	4.68431e-05
NZ_CP051548.1\|WP_125124185.1\|2242982_2244689_-\|D-lactate-dehydrogenase	gnl\|CDD\|236872	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.	0
NZ_CP051548.1\|WP_041852019.1\|2239057_2239831_+\|SDR-family-oxidoreductase	gnl\|CDD\|237187	PRK12743, PRK12743, SDR family oxidoreductase.	3.15638e-156
NZ_CP051548.1\|WP_041852009.1\|2250329_2251067_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	1.04577e-72
NZ_CP051548.1\|WP_071195698.1\|2241351_2242290_+\|D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|236952	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.	0
NZ_CP051548.1\|WP_041852006.1\|2253847_2254567_+\|two-component-system-response-regulator-BtsR	gnl\|CDD\|236956	PRK11697, PRK11697, two-component system response regulator BtsR.	1.50736e-163
NZ_CP051548.1\|WP_169039078.1\|2237412_2238807_+\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP051548.1\|WP_041852022.1\|2234562_2235396_+\|transcriptional-antiterminator-BglG	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	7.36191e-115

>NZ_CP051548.1|WP_041852013.1|2244863_2247161_+|beta-glucosidase-BglX
MKWLCSVGVAVSLALQPVMAEEMFGNHPLTPQARDAFVTELLKKMTVDEKIGQLRLISVGPDNPKEAIRDMIAKNQVGAIFNTVTRPDIRAMQDQVMQLSRLKIPLFFAYDVVHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRGSEGFGEDTYLTTEMGRAMVKSMQGKSPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYLPPYKAGLEAGSGAVMVALNSLNGTPATSDSWLLKDVLRDEWGFKGITVSDHGAIKELIKHGVAADPEDAVRVALKAGINMSMSDEYYSKYLPGLIKSGKVTMAELDDATRHVLNVKYDMGLFNDPYSHLGPKDSDPKDTNAESRLHRKEAREVARESLVLLKNRLDTLPLKKDATIAVVGALADSKRDMMGSWSAAGVAGQSVTVLTGIRNAVGPKGTILYARGSNITDDKGIVDFLNLYEPAVVQDKRSPQEMIDEAVTVAKKSDVVVAVVGEAQGMAHEASSRTDLTIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGPLYPFGYGLSYTTFNVSDVKMSAPTMTRDGKVTASVDVTNTGKRDGATVVQMYLQDVTASMSRPVEQLRGFEKVDLKAGETKTVSFPIDIEALKFWNQRMKYDAEPGKFNVFIGLDSARVKQGEFTLQ
>NZ_CP051548.1|WP_125124185.1|2242982_2244689_-|D-lactate-dehydrogenase
MSSTTSQHHIAFIRELERLTGASHVLTDPAKTARYRKGFRSGQGDALAVVFPGTLLELWRVLSACVNADKIILMQAANTGLTEGSTPNGNDYDRDIIIISTLRLDKLHLIDNGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMSLYARIDETGRLQLVNHLGIELGSTPEQILSKLDDERVTDADVRHDGRHGHDQDYVTRVRDVDADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFVAPTHQQVFYIGTNQPQVLSALRRHILSEFTHLPVAGEYMHRDIYDIAERYGKDTFLMIDKLGTDKMPFFFTLKGRTDALLAKASLFKPHFTDRAMQKLGHLFPSHLPPRMKSWRDKYEHHLLLKMSGDGIAEAQRWLTEYFKTAEGGFFACTSEEGNKAFLHRFAAAGAAIRYQAVHADEVEDILALDIALRRNDDDWFEHLPPEIDSQLTWKLYYGHFFCHVFHQDYIVKKGVDTHALKEQMLELLRQRGAQYPAEHNVGHLYEAPDDLKRFYLENDPTNSMNPGIGKTSKRKNWQ
>NZ_CP051548.1|WP_041852015.1|2242290_2242845_-|N-acetyltransferase
MSAVDVLSENALVVRDATLDDVHAISSLYAWHVLHGRASFEEVPPTIDEMRQRMHKIANDGLPWMVALYHGIVVGYCYASPYRPRQAYRYTLEESIYVDASMTGRGIGSMLMDALIARCEEGPWRQMIAVIGDGQNNAGSLRLHKKHGFEIVGQLRSVGYKKGDWRDTVIMQRPLNDGDWTLPE
>NZ_CP051548.1|WP_071195698.1|2241351_2242290_+|D-alanyl-D-alanine-endopeptidase
MLKIRVSLLSLALMFAVPVAPQALAKTAAATASAQPEIASGSAMIVDLQTNQVIYSSHPDLVRPIASITKLMTAMVVLDAHLPLDEKIKVDISHTPEMKGIYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMTHTRYVEPTGLSISNVSTASDLIKLLVATKQYPLLGQLSTTREDMATFSNPGYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKAQPVPASALSYKRQKAAQMVENHGAQTAQND
>NZ_CP051548.1|WP_041852017.1|2240592_2241180_+|YIP1-family-protein
MNHVWGLFSHPDREMQVIKGENETVSHHYTHHVLFMAAIPVICAFIGTTQIGWNFGEESVVQLNWFTAFYLAVIFYALMLAGVAVMGRVIWWMARSYPQRPSLARCMVFAGYVATPLFLSGIVALYPLVWLCALVGTVALFYTGYLLYVGIPTFLNINREEGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF
>NZ_CP051548.1|WP_041852018.1|2239831_2240413_-|DedA-family-protein
MDMNHLISQYGYAALVVGSIAEGETITLLGGVAAHQGLLKFPLVVMAVALGGMIGDQLLYLLGRRYGMKILQRFSRHQDKINQAQRMINRRPWLFVIGTRFMYGFRIIGPLLIGASHLPPKIFLPLNIFGAIVWALIFTTLGYLGGEVIGPWLHQFDHHLKKLIWLVLAVVVVFSVRWWLRHRQKKRRNPPSE
>NZ_CP051548.1|WP_041852019.1|2239057_2239831_+|SDR-family-oxidoreductase
MTMQKVAIVTAADSGIGKACALMLAEKGFDIGITWHSDDSGARDTVQQVEARGRQARTIQLDLSHLPDGAQAIETLINAFGRVDALVNNAGAMTKAPFLDVSLEAWRKIFTVDVEGAMLCSQIAARHMVKQGQGGRIVNITSVHEHTPLPEASAYTAAKHALGGLTKSMALELVSYNILVNAVAPGAIATPMNNMSDADAKPGSMPNIPLARPGKTQEIASLVAWLCSDDASYTTGQSFIVDGGFMLANPQFNASRH
>NZ_CP051548.1|WP_169039078.1|2237412_2238807_+|6-phospho-beta-glucosidase
MNTFPNDFLWGGAIAANQVEGAYLEDGKGLSTSDVQPKGVFGDVVERVAGDSGLKDVAIDFYHRYPEDIALFAEMGFSCLRVSIAWTRIFPNGDETTPNEAGLAFYDKLFDEMISKGMTPLVTLSHYEMPWGLVKGYGGWGSRQTITFFERYARTVFERYKNKVKLWLTFNEINMSLHAPMTGVGLPEGSSKAEIFQAIHHQLVASALAVKACHEIIPDAKIGNMILGGLMYPLSCKPEDVLETLQQNRTWQFFGDVQCRGEYPGYMLRFFRENDITLNISDADRDALRTTIDFISFSYYMTGCVTTDEELNQKARGNILSMVPNPHLASSEWGWQIDPVGLRTLLNVMWDRWQKPLFIVENGLGAKDKPEADGSINDDYRISYLNDHLVQVREAIEDGVEVMGYTSWGPIDLVSASKAEISKRYGFIYVDRDDAGNGTLARSRKKSFWWYQEVIASKGASLKR
>NZ_CP051548.1|WP_169039077.1|2235537_2237397_+|PTS-beta-glucoside-transporter-subunit-IIABC
MEYQALAKDILSHVGGKENITSLVHCATRLRFKLKDNKKADGEGLKANPGIIMVVESGGQFQVVVGNHVHDVWQAVRDEAGLTDDTPVAEPEQGEKVSLVGRVIDVVSGIFTPFIGIMAASGIVKGLLALAVVCGWLTTNSGTYQIWFAASDALFFFFPLILGYTAGKKFGGNAFVTLAIGGALTHPMMIKAFEASQAPGAVSETFLGIPITFINYSGSVIPIIIAAWASCWLEKQCNKFLHSAVKNFFSPLICIAVIVPLTFLAIGPLATLLSQGLAHGYQAIYLFAPWLAGAALGALWQVCVIFGLHWGLVPLMINNLTVFGQDTMLPILLPAVLGQVGAVLGIFLRTRDPRQKILAGSAATAGIFGITEPAVYGLTLPLRRPFIFGCVSGAIGGAIVGFSDSHVYSFGFANVFTLAQMIPPGGVDATLWGGILGTVVSLVLACILTFVAGMPKTTAVTKPIAVVPGENEILSPMTGTVLALEQVPDSTFAAGLLGQGAAIIPSDNKVVAPFAGEVASLFQTKHAIGLLSDSGIEVLIHVGIDTVKLEGKPFTAHVSVGDKVQPGDLLLEFDRDAILSAGYDLATPIIISNSDDYRAVTTVASTSVESGMPLLAVNR
>NZ_CP051548.1|WP_041852022.1|2234562_2235396_+|transcriptional-antiterminator-BglG
MKIAKILNNNVVVVLDEQQREQVVMGRGLAFQKRTGDELDDSKIEKIFALQSDELVRRLSELLNQIPLEVMTACDRIIELARGRLGKLQDSLYITLTDHCFFAIERLKTGQVIRNVLLWEIRRLYPKEFQIGQEARAIIAKRLGVELPEDEAGFIALHLVTAQLNSDMPDVMHITKVMQEILHIVKYQLKLDYNEESLSYHRFVTHLKFFSQRMLTRTVVEDDDLSLHQAVKENYASAWRCAEKVARHLEQNYQRNLTTEEIMFLAIHIERVRKDKR
>NZ_CP051548.1|WP_165158278.1|2248247_2249402_+|ABC-transporter-permease-subunit
MERRCHNRVLLLLVLLALAAITLPFVSYAPNRLVSGESRAIWQVWPAYAAWGLLVPAGLLLLCFLPHRIASLATLLLTEASFCALVWCAGRAATDLAQSGSALARTSPGSGLWLWLALSLLASSDAIRRLTDNPVWRWLLHAQIWLLPLWLLLSGQLDSLSLLKEYANRQDVFNDALAQHLKLLFGTLLPALALGVGIGLWCYRHPSRQQPVFAVLNVIQTVPSVALFGLLIAPLAGLVAQFPWLGSLGVAGTGITPALIALVLYALLPLVRGVVAGLNQVPVDVLESAKGMGMSARQRFLHIRLPLALPILLRSLRVVTVQTVGMAVIAALIGAGGFGALVFQGLLSSALDLVLLGVIPVIALAVVVDALFALGIALLEVKQP
>NZ_CP051548.1|WP_041852010.1|2249398_2250346_+|ABC-transporter-ATP-binding-protein
MIEFRHVSKSFAGQQAVSDLNLECKTGAFSVLIGTSGSGKSTTLKMINRLVEHDEGTILFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWTVAHNIATVLQLQKWSRGKIAARVDELMALLGLDESLRDRFPHQLSGGQQQRVGVARALAADPEVLLMDEPFGALDPVTRGALQQEMIRIHRLLGRTIVLVTHDIDEALQLADHLVLMDSGAIVQQGTPLEMLTRPATPFVRDFFGRSELGVRLLSLRHVSAWMRPGETVAGEPLREDMTLREALSLFVARQCDVLPVADAQGVPCGTLHFRDLLRTEALSETSA
>NZ_CP051548.1|WP_041852009.1|2250329_2251067_+|ABC-transporter-permease
MRLLRDPLLWLIAVFVALLVAMPYSGALFGTLFPQLPRPVYQQESFVSLTLAHFWLVGVSSLLAIVIGLGAGIAVTRPWGREFRPLVETIAAVGQTFPPVAVLAIAVPVMGFGREPAIIALILYGVLPILQGTLAGIAAVPESVHSVAKGMGMSSMQQLFRVELPLAAPVIIAGIRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVVQGAVLVALAAIIVDRGFERLARLFSLHRREQ
>NZ_CP051548.1|WP_075203650.1|2251041_2251155_-|protein-YohO
MNLSKLTVIAIFLLMAIGGIGGVMLAGYSFIVRGGAG
>NZ_CP051548.1|WP_041852008.1|2251213_2251945_-|HTH-type-transcriptional-regulator-MlrA
MALYTIGEVAMLCDINPVTLRAWQRRYGLFKPQRTEGGHRLFTDADIDRIREIKRWIDTGVQVSKVQTLLNNEPEHERNGWRAQQEAVLQILQSGNLQRLRLWIKERSHDYPAETLITHLFIPLRRRLQSQQPALTVMLSLLDGVLINYICGCLNTARKKNGRDALVVGWNVQDTTRIWLEGWMASQQGWRVDVLAHSLSYLRPEMFEGQTLLVWCGEAPSSSQQKQMHDWQQNGHAIFPLGI
>NZ_CP051548.1|WP_041852007.1|2252165_2253854_+|sensor-histidine-kinase
MYEFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTVRLPHKLLCYVTFSIFCILGTYFGLHIEDSIANTRAIGAVMGGLLGGPLVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIKRGRTDRVFNPLTAGAITCVAELTQMLIILLIARPYESALHLVQSIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEENSMKVAQVLYKELDIGAVAITDREKLLAFTGTGDDHHLPGRPISSVWTQKAIESGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVVGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKALLTQSEIKLLHAQVNPHFLFNALNTLMAVIRRDSDQAGLLVQYLSTFFRKNLKRPSEIVTLADELEHVNAYLQIEKARFQSRLQVQLHVPDALSHLHLPAFTLQPIVENAIKHGTSQLLGVGEITINASQDGDHLVLDIEDNAGLYQPKTDASGLGMSLVDKRLRARFGDGCGISVACEPDIFTRITLRLPLEESAC
>NZ_CP051548.1|WP_041852006.1|2253847_2254567_+|two-component-system-response-regulator-BtsR
MLKVLIVDDEPLARENLRILLQEENDIEIVGECANAVEGIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYVVFLTAFDEYAVKAFEEHAFDYLLKPIEARRLEKTLTRLRQERNVQDVSVLPENQASLKFIPCTGHSRIYLLQMDEVAFVSSRMSGVYVTSHDGKEGFTELTLRTLESRTPLLRCHRQYLVNMAHLKEIRLEDNGQAELLLRDGQTVPVSRRYLKNLKEALGL
>NZ_CP051548.1|WP_079496303.1|2254672_2255014_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MYAKDINWRGSTLDDLITFPQAIRRIAGFELHKVQHGREPTDWKPINEWGMGVIEIRLHGEDGEYRVVYVARFSDVVCVLHCFQKKTQKTSQWDIAIIKARYKAARDEWRQKK
>NZ_CP051548.1|WP_071195707.1|2255010_2255355_+|XRE-family-transcriptional-regulator
MTHKVDTKVRHITKASGNIFSDLGFAPQEASQLLAASREEMARADELKKQLMMEITDWMKHNGLKQVDAAKVLHVSRPRVSDVVNQKTEKFTIDTLVGMATLIGKRVQLVIDKV
>NZ_CP051548.1|WP_041852003.1|2255437_2255914_+|DUF1456-family-protein
MLNNDILRSLRYALKMNNGDLKRVFALAGAPVSDEQLVGWLHKEDEEGFQRCPDIMMSVFLNGLIYERRGKDESQPALVTERKMTNNIILKKLRIAFSLKTDDILAILTEQKFRVSMPEITAMMRATEHKNFRECGDQFLRYFLRGLAVREHAKPAAQ

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Crispr_ID: NZ_CP051548_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051548_3

2724352-2724481

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051548_3

>merge|NZ_CP051548|3|2724352-2724481|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCACTAAAGAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP051548|3|3|2724352-2724481|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCACTAAAGAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051548.1\|WP_169039220.1\|2716790_2718011_+\|cysteine-desulfurase-SufS	unknown	unknown	gnl\|CDD\|181766
NZ_CP051548.1\|WP_169039219.1\|2715522_2716794_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|236804
NZ_CP051548.1\|WP_071195346.1\|2725722_2727096_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP051548.1\|WP_041851575.1\|2720167_2721580_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP051548.1\|WP_169039221.1\|2725319_2725604_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051548.1\|WP_041851568.1\|2729098_2730247_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP051548.1\|WP_169039218.1\|2713300_2714785_+\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP051548.1\|WP_041851577.1\|2718024_2718441_+\|cysteine-desulfuration-protein-SufE	unknown	unknown	gnl\|CDD\|181767
NZ_CP051548.1\|WP_041851580.1\|2714801_2715548_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|181965
NZ_CP051548.1\|WP_169039223.1\|2730548_2731748_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP051548.1\|WP_090086635.1\|2734113_2734203_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP051548.1\|WP_041851576.1\|2718536_2719553_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NZ_CP051548.1\|WP_169040076.1\|2724803_2724971_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240633
NZ_CP051548.1\|WP_041851569.1\|2728318_2728960_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP051548.1\|WP_169039222.1\|2727581_2728190_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP051548.1\|WP_071195348.1\|2722076_2722868_-\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238819
NZ_CP051548.1\|WP_007374746.1\|2719622_2719859_-\|major-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|185294
NZ_CP051548.1\|WP_041851573.1\|2723179_2724235_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP051548.1\|WP_041851565.1\|2732789_2733815_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP051548.1\|WP_169039224.1\|2731861_2732773_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948

Protein	Function_ID	Function_description	E-value
NZ_CP051548.1\|WP_169039220.1\|2716790_2718011_+\|cysteine-desulfurase-SufS	gnl\|CDD\|181766	PRK09295, PRK09295, cysteine desulfurase SufS.	0
NZ_CP051548.1\|WP_169039219.1\|2715522_2716794_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|236804	PRK10948, PRK10948, Fe-S cluster assembly protein SufD.	0
NZ_CP051548.1\|WP_071195346.1\|2725722_2727096_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP051548.1\|WP_041851575.1\|2720167_2721580_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP051548.1\|WP_041851568.1\|2729098_2730247_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP051548.1\|WP_169039218.1\|2713300_2714785_+\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP051548.1\|WP_041851577.1\|2718024_2718441_+\|cysteine-desulfuration-protein-SufE	gnl\|CDD\|181767	PRK09296, PRK09296, cysteine desulfuration protein SufE.	4.2047e-103
NZ_CP051548.1\|WP_041851580.1\|2714801_2715548_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|181965	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.	0
NZ_CP051548.1\|WP_169039223.1\|2730548_2731748_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP051548.1\|WP_041851576.1\|2718536_2719553_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	4.1922e-85
NZ_CP051548.1\|WP_169040076.1\|2724803_2724971_-\|hypothetical-protein	gnl\|CDD\|240633	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase. Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	5.51625e-16
NZ_CP051548.1\|WP_041851569.1\|2728318_2728960_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	3.76012e-123
NZ_CP051548.1\|WP_169039222.1\|2727581_2728190_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.79296e-16
NZ_CP051548.1\|WP_071195348.1\|2722076_2722868_-\|inositol-monophosphatase-family-protein	gnl\|CDD\|238819	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.	1.84952e-104
NZ_CP051548.1\|WP_007374746.1\|2719622_2719859_-\|major-outer-membrane-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	3.07419e-39
NZ_CP051548.1\|WP_041851573.1\|2723179_2724235_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP051548.1\|WP_041851565.1\|2732789_2733815_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP051548.1\|WP_169039224.1\|2731861_2732773_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0

>NZ_CP051548.1|WP_041851573.1|2723179_2724235_+|NAD(P)-dependent-alcohol-dehydrogenase
MTIKVLGYAAQSSKAPLAPHYFERRDPRADDVVIDILYCGVCHSDLHQARNDWGFSQYPLVPGHEIVGRVTRVGPGVSKFKAGDLVGIGCMVDSCRECSSCKQGLEQYCEEGNIQTYNGIDRHDHMPTYGGYSRSIICSEDFVLRIPENLDVQAVAPLLCAGITTWSPLRRWGVKAGSKVAVIGLGGLGHMALKLAHAMGAEVTLFTRSPGKEADARQLGAQHVVLSTDPQQMDAVKGQFELIIDTVPYAHDINPYMPTLTLDGTLVFVGLLGDIEPAVSTLPMILGRRSVSGSCIGGIAETQEMLDFCGKHNITADSEVIRMDQINDAFERLLKSDVKYRFVIDMQTLVE
>NZ_CP051548.1|WP_071195348.1|2722076_2722868_-|inositol-monophosphatase-family-protein
MNHAVPDIAFLHELADAADKQTLPRFRSQLNLHVDTKPKEGYRFDPVTDADREAERAIRAIIDARYPDHSIMGEEFGISGSGPLQWVLDPVDGTRPFLCGIPVWGTLIGLTVEGRGHLGMMSQPFTGERFWADGRQSWRSGPQGTAPLNTRKGLSVEQAILHITSPEPVSRFPEVNFAALDDAALMTRYGGECYAMAMLAAGQIDLCLEYSLQPYDIVALIPIIEQAGGVVTTLSGGRPEAGGHVLAAGCPEVHAHALKLLHS
>NZ_CP051548.1|WP_041851575.1|2720167_2721580_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKKAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKTVIGNTETVAVTYEGFTSDLQVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVEEIRQHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVTIMATICERTDRVMTSRLDFNNDSRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNETTARQLVLSKGVVAQLVEEIASTDDFYRLGKELAVQSGLAQKGDVVVMVSGALVSSGTTNTASVHVL
>NZ_CP051548.1|WP_007374746.1|2719622_2719859_-|major-outer-membrane-lipoprotein
MNRTKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAIRSDVQAAKDDAARANQRLDNQAHSYRK
>NZ_CP051548.1|WP_041851576.1|2718536_2719553_+|L,D-transpeptidase-family-protein
MKRASTITLSLIGAFSAIQMAWAVDYPLPPAGSRLIGQNQTYTVQESDKNLQAIARHFDTAAMLIIEANNTIAPVPRAGTVVTIPSQMLLPDTPRDGIVVNLAELRLYYYPPGKDIVQVFPLGIGQQGLETPVTTTRISQKIPNPTWTPTAGIRARSLAQGIELPAVVPAGPNNPLGRYALRLGIGNGEYLIHGTSAPDSVGLRVSSGCMRMNAADIQSLFSQVNTGTRVTILNEPVKYAVEPDGRHYIEVHRPLSQNVGENTQTLPISFPAGLASTIEQGGGDRALIDKALYRRAGYPVAIPANKSGKVTTESVVSAQNRDASADVNTEESGKTVTQ
>NZ_CP051548.1|WP_041851577.1|2718024_2718441_+|cysteine-desulfuration-protein-SufE
MAVLPDRDKLLRNFGRCANWEEKYLYIIELGQRLPALSDEAHNPENIIQGCQSQVWIIMHRNDEGMIELAGDSDAAIVKGLIAIVFILYQQMTAQDILAFDVRPWFEKMSLTQHLTPSRSQGLEAMIRAIRSKAANIS
>NZ_CP051548.1|WP_169039220.1|2716790_2718011_+|cysteine-desulfurase-SufS
MSFSVHSVRADFPVLTREVNGVPLAYLDSAASAQKPNQVIDAEAEFFRHGYAAVHRGIHTLSAEATQRMEQVRTQVAGFLNARLPEELVFVRGTTEGINLVANSWGNSQVRAGDNIIISAMEHHANIVPWQMLCERVGAELRVIPLNIDGTLQREALPGLFDARTRLLAVTQVSNVLGTENPVAEMIALAHQHGAKVLIDGAQAIMHHTVDVQALDCDFYVFSGHKLYGPTGIGVLYVKEDILQAMPPWEGGGSMIATVSLTEGTTYAKAPWRFEAGTPNTGGIIGLGAAIGYVSGLGLDAIAQYEQTLMRYALNALADVPDLTLYGPQDRLGVIAFNLGKHHAYDVGSFLDNYGVAVRTGHHCAMPLMAFYNVPAMCRASLVMYNTQEEVDRLVAGLKRIHQLLG
>NZ_CP051548.1|WP_169039219.1|2715522_2716794_+|Fe-S-cluster-assembly-protein-SufD
MAGLQNSSNALQQWHHLFEQQGGARSEQAQQHLQQMLRLGLPTRKHENWKYTPLDGLLNSQFVTTAGALSAQECDALALPVDALRLVFVDGYYNATLSDDIAGSGFTVTINDDRQTLQAPVQPEVFLHLTESLAQSITHISVGRNQRATRPLLLMHITQGLGGAEMNTAHYRHHISLAEGAEATVYEHYVSLNTHRHFTGARLTMDVAANAQLHHVKLAFENPESYHFAHNDMRLGADAAAHSHSFLLGGAVLRHNTSTQLNGENTTLRMNSLAMPVKSEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQMFYLRSRGIDQQAAQKMIIYAFAAELTEAISDEALRQQVLVRIGQRLAGGLA
>NZ_CP051548.1|WP_041851580.1|2714801_2715548_+|Fe-S-cluster-assembly-ATPase-SufC
MLSIKDLQVSVEDKEILRGLSLDVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGSVEYKGKDLLELSPEDRAGEGVFMAFQYPVEIPGVSNQFFLQTALNAVRKYREQDELDRFDFQDLMEDKIKLLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPDLCILDETDSGLDIDALKIVADGVNALRDDKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ
>NZ_CP051548.1|WP_169039218.1|2713300_2714785_+|Fe-S-cluster-assembly-protein-SufB
MSRNTEATDDVKTWTGNLNYKEGFFTRLTTDELAKGINEDVVRAISAKRNEPEWMLEFRLRAFRAWLEMEEPHWLKAHYAKLDYQDYSYYSAPSCGSCDDTCASQPGAVQQTGANSFLTDEVEAAFNQLGVPVREGREVAVDAIFDSVSVATTYREKLSEQGIIFCSFGEAIHDHPELVKKYLGTVVPSNDNFFAALNAAVASDGTFIYIPKGVRCPMELSTYFRINAEKTGQFERTILIADEGSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKDAEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCILRGDNSIGEFFSVALTSGHQQADTGTKMIHIGKNTRSTIISKGISAGHSQNSYRGLVKIMPSATNARNFTQCDSMLIGPDCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEDDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG
>NZ_CP051548.1|WP_169040076.1|2724803_2724971_-|hypothetical-protein
MLCALGAGYENIDLSAAKARNITIAHGPGTNDTSVADHAMALLMAIGRGIQVSVR
>NZ_CP051548.1|WP_169039221.1|2725319_2725604_-|hypothetical-protein
MAGIVALVYFVVGFVAFTRKIKLFTIASTLLLFVALKMIAVSQPLTLVFIALLVIAFVVLLVMKNERDNKSVFYFSLPCWLLIAAVLIHLFYLT
>NZ_CP051548.1|WP_071195346.1|2725722_2727096_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYFTEARQLLALAIPVILAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPTVAQLNGSGRRERIAHQVRQGFWLAATVSILIMIVLWNAGYIIHAMHDIDPQLADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFLGLLVNIPINYIFIYGHFGMPELGGVGCGVATASVYWVMFVAMLSYVKRAGSMRDIRNEAHSGKPDLGVLKRLVQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGFRLGQGSTLDAQTAAHTGLGVGVCMAVLTAIFTVALREHIALLYNDNPEVVTLASQLMLLAGLYQISDSIQVIGSGILRGYKDTRSIFFITFTAYWVLGLPAGYILALTDLVVDRMGPAGFWMGFIIGLTSAAILMMLRMRFLQRQPSSIILQRAAR
>NZ_CP051548.1|WP_169039222.1|2727581_2728190_+|methyltransferase-domain-containing-protein
MESDAAKQILSLYEKHAEEFARQRSRQLFEKKWLDKFLQLLRPGGHILDIGCGNGKPIAEYFIGSGFTLTGVDGSAAMIAQAQADFPTQRWIQRDMRHLAMDETFDGLIAWDSFFHLTQNDQRAMFPLFAALSHPGSALMFTSGTSNGTAMGTFAGEPLYHASLAPEEYRKILAQHGFTVVDVQFEDPECGYHSIWLCKKVN
>NZ_CP051548.1|WP_041851569.1|2728318_2728960_+|riboflavin-synthase
MFTGIVQGTAKLVSIDDKPNFRTHVVELPDHMLEGLETGASVANNGCCLTVTEINGSHISFDLMKETLRITNLGELAVGDAVNVERAAKFSDEIGGHLMSGHIMTTAEIVKILTSENNRQIWFKVQDPALMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLQRTTLGSKKLGHRVNIEIDPQTQAVVDTVERVLAAKEAAAAVVSNDE
>NZ_CP051548.1|WP_041851568.1|2729098_2730247_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVRDDNWFRIANELLSRAGIQVNGPSASDIQVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDVFFTKVLRAGLEKQLPRHLKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFTRMLDPQMQYSCAYWKDAERLEDAQIAKLRLICEKLQLKPGMRVLDIGCGWGGLAQFMAQNYAVSVVGVTISAEQQKHAQQRCLGLDVDIRLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFTVVDRNLKPDGLFLLHTIGSRRTDHNVDPWIDRYIFPNGCLPSVRQIANASESHFVMEDWHNFGADYDKTLMAWYERFLASWPEIADNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIEHGLRVAR
>NZ_CP051548.1|WP_169039223.1|2730548_2731748_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKGFLVWLAGLSVLGFLATDMYLPAFADIQQDLNTSAAAVSATLSLFLAGFAVAQLVWGPLSDRYGRKPILLSGLAIFAVGCLGMLWVQDAVWLLVLRFVQAVGVCAAAVTWQALVTDHYPAQRTNRIFATIMPLVGLSPALAPLLGSWILAHFSWQAIFATLFVITVILMLPALRLRPGAQKPAKTAQALTFAALLRDKAYRGNVLIYAACSASFFAWLTGSPFILHEMGYGPAVIGLSYVPQTIAFLVGGYGCRAALQKWSGARLLPWLLLAFALSVAATWGVGLMPGASLTALLIPFCLMAMANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFVASLLVSALITHPLLATTSVMLSTVVLVAFGYRMQRQESESYQADEASESSSHA
>NZ_CP051548.1|WP_169039224.1|2731861_2732773_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSGAAQELHRVPSAVSYTVRQLEEWLALPLFERRHRDVELTPAGVWFLKEGRSVIKKMQITRQQCQQIANGWRGQLSIAVDNIVKPQRTRQMIVDFYRHFSDVELLVSQEVFNGVWDALADGRVELAIGATQAIPVGGRYTFRDMGMLSWKCVVARHHPLATMASPLSDDTLRNWPSLVREDTSRSLPKRITWLLDNQKRVVAPDWESSAACLSAGLCIGMVPAHFARPWIDRGEWVALALENPFPDAACCLTWQQNDASPALSWLLSYLGDSETLNREWLREQE
>NZ_CP051548.1|WP_041851565.1|2732789_2733815_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPESLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFAGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLSGFMKAMEEAHITVPENWIVQGDFEPESGYRAMQQILTQSSRPTAVFCGGDIMAMGALCAADEMGLRVPQDISVIGYDNVRNSRFFTPSLTTIHQPKDSLGETAFNMLLDRIVNKREESQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP051548.1|WP_090086635.1|2734113_2734203_+|YnhF-family-membrane-protein
MSTDLKFSLVTTVIVLALIVAGGLTAALH

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Crispr_ID: NZ_CP051548_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051548_4

4967669-4967812

Orphan

Consensus_repeat	Method
TTAGTGTCTGCACCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051548_4

>merge|NZ_CP051548|4|4967669-4967812|CRISPRCasFinder
TTAGTGTCTGCACCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGGCCGCACTCAAGGTAAACAGCAGATTTTCTCAACGAGAAAATCTTAGTGTCTGCACCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCA

>NZ_CP051548|4|4|4967669-4967812|CRISPRCasFinder
TTAGTGTCTGCACCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCA	GGCCGCACTCAAGGTAAACAGCAGATTTTCTCAACGAGAAAATC
TTAGTGTCTGCACCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051548.1\|WP_110295033.1\|4974838_4975324_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|182325
NZ_CP051548.1\|WP_169039934.1\|4976244_4977099_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP051548.1\|WP_071193674.1\|4956165_4956789_+\|TRIC-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|182564
NZ_CP051548.1\|WP_039078406.1\|4977239_4977620_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_CP051548.1\|WP_071193676.1\|4954659_4955358_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP051548.1\|WP_169039932.1\|4972406_4973303_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|274810
NZ_CP051548.1\|WP_039078412.1\|4970939_4971644_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP051548.1\|WP_072039726.1\|4973351_4974770_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_CP051548.1\|WP_039078415.1\|4965017_4967555_-\|bifunctional-glycosyl-transferase/transpeptidase	unknown	unknown	gnl\|CDD\|236544
NZ_CP051548.1\|WP_001155227.1\|4971824_4972280_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP051548.1\|WP_039078413.1\|4970396_4970927_+\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|185079
NZ_CP051548.1\|WP_169039933.1\|4975441_4976233_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP051548.1\|WP_169039928.1\|4958803_4960786_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720
NZ_CP051548.1\|WP_169039927.1\|4955350_4956151_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	unknown	unknown	gnl\|CDD\|179575
NZ_CP051548.1\|WP_169040135.1\|4960782_4961673_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	unknown	unknown	gnl\|CDD\|236719
NZ_CP051548.1\|WP_125125295.1\|4957375_4958656_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP051548.1\|WP_169039930.1\|4962517_4964767_-\|ferrichrome-porin-FhuA	unknown	unknown	gnl\|CDD\|236643
NZ_CP051548.1\|WP_169039931.1\|4967830_4970260_-\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950
NZ_CP051548.1\|WP_169039929.1\|4961672_4962470_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	unknown	unknown	gnl\|CDD\|182561
NZ_CP051548.1\|WP_039078421.1\|4956837_4957182_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186

Protein	Function_ID	Function_description	E-value
NZ_CP051548.1\|WP_110295033.1\|4974838_4975324_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|182325	PRK10239, PRK10239, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	4.33203e-110
NZ_CP051548.1\|WP_169039934.1\|4976244_4977099_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	2.54355e-167
NZ_CP051548.1\|WP_071193674.1\|4956165_4956789_+\|TRIC-cation-channel-family-protein	gnl\|CDD\|182564	PRK10578, PRK10578, hypothetical protein; Provisional.	5.51606e-127
NZ_CP051548.1\|WP_039078406.1\|4977239_4977620_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	2.78614e-76
NZ_CP051548.1\|WP_071193676.1\|4954659_4955358_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	2.37471e-140
NZ_CP051548.1\|WP_169039932.1\|4972406_4973303_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|274810	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. [Protein synthesis, tRNA and rRNA base modification].	1.04106e-155
NZ_CP051548.1\|WP_039078412.1\|4970939_4971644_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	1.05293e-136
NZ_CP051548.1\|WP_072039726.1\|4973351_4974770_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	0
NZ_CP051548.1\|WP_039078415.1\|4965017_4967555_-\|bifunctional-glycosyl-transferase/transpeptidase	gnl\|CDD\|236544	PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed.	0
NZ_CP051548.1\|WP_001155227.1\|4971824_4972280_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	2.27024e-91
NZ_CP051548.1\|WP_039078413.1\|4970396_4970927_+\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|185079	PRK15124, PRK15124, RNA 2',3'-cyclic phosphodiesterase.	5.52668e-117
NZ_CP051548.1\|WP_169039933.1\|4975441_4976233_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	7.1145e-161
NZ_CP051548.1\|WP_169039928.1\|4958803_4960786_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	0
NZ_CP051548.1\|WP_169039927.1\|4955350_4956151_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	gnl\|CDD\|179575	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional.	2.99286e-163
NZ_CP051548.1\|WP_169040135.1\|4960782_4961673_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	gnl\|CDD\|236719	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD.	0
NZ_CP051548.1\|WP_125125295.1\|4957375_4958656_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP051548.1\|WP_169039930.1\|4962517_4964767_-\|ferrichrome-porin-FhuA	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_CP051548.1\|WP_169039931.1\|4967830_4970260_-\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0
NZ_CP051548.1\|WP_169039929.1\|4961672_4962470_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	gnl\|CDD\|182561	PRK10575, PRK10575, Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC.	0
NZ_CP051548.1\|WP_039078421.1\|4956837_4957182_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	1.47512e-81

>NZ_CP051548.1|WP_039078415.1|4965017_4967555_-|bifunctional-glycosyl-transferase/transpeptidase
MAGNDREPIGRKSRPSRPAKEKVSRRRVREEEYDDYEDDDGDEQDSAPRKGKGKGGKPRGKRRWFWLLLKICIVGAVLLAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMPISKNEMVKLLEATQYRQVTKMTRPGEFTVQAKSIEMIRRPFDFPDSKEGQVRARLTFDGDRLDSIENMDSNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISFYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIVDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQAMLVGMVKGASIYNPWRNPKLALERRNLVLRLMQEQKVIDQELYDMLSARPLGVQPRGGVISPQPAFMQMVRQELQAKLGDDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALIKQRKLDDLETAMVVVDRFSGEVRAMVGGATPQFAGYNRAMQARRSIGSLAKPATYLTALSQPDKFRLNTSIADAPISLRLSNGQVWAPQNDDHRFSGQVMLVDALTRSMNVPTVNLGMAMGLPAVTDTWLKLGAPKDQLTANPSMLLGALNLTPIEVAQAFQTIASGGNRATLSALRSVIAEDGTVLYQSYPQSERAVPAQAAYLTLWTMQQVIQRGTGRQLGAKYPGLHLAGKTGTTNNNVDTWFAGIDGREVTITWVGRDNNQPTKLYGASGAMAIYQRYLANQSPIPLDLTPPEDITTMSVDDMGNFICGGGGVRSLPVWTTSPETLCQQNPMMQQPQQGNPFDQSTPPPQQQQPQQQPPQQQEKSDGVAGWIKDMFGSN
>NZ_CP051548.1|WP_169039930.1|4962517_4964767_-|ferrichrome-porin-FhuA
MARLKTAQPVNTSLRKLAVVVATAVSGMSVYAQAATTQPEETVTVTSSSTAGQENAWGPAATIAARHSATGTKTDTPIEKTPQSISVVTSEEMALHQPKSVKEALSYTPGVAVGTRGASNTYDYLVIRGFAADGQSQNNYLDGMKMQGNFYNDAVIDPYMLERAEILRGPASVLYGKSSPGGLLNMVSKRPTTTPLYEVQFKMGTDNLYQTGFDFSDALDDDGVYSYRLTGLARSANAQQEGAKEQRYTIAPSFSWRPDDKTNFTFLSYFQNEPDTGYYGWLPKEGTVQPLPNGSRLPTDFNEGAKNNTYSRNEKMVGYSFEHGFNDTFTLRQNLRYAENKVAQNSVYGYGVCSDSANGFNASCNALSAADKGHYLARKYVVDSERLQTFTVDTQLQSKFVTGDVDHTLLTGVDFMRMRNDIDSWFGYDNSVPLLDLYNPVSSDFDFGTKDLTNSGPYQVLNKQKQTGVYAQDQAQWDKVLVTLGGRYDWAKQETLTRTTGIQTTRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPASTTGQNGKIFAPSKGKQYEAGVKYVPKDRPIVLTGAVYQLTKTNNLMGDPAGSFYSVEGGEIRARGVELEAKAALSASINVVGSYTYTDAEYTTDTNYKGNTPAQVPKHMASLWGDYTIFDGALSGLTLGTGARFTGSSQGDPANSFKVGSYTLVDALVRYDLARVGLAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF
>NZ_CP051548.1|WP_169039929.1|4961672_4962470_-|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC
MQENNALPDTTFQLTDVTFSVPGRTLLHPLSLTFPVGKVTGLIGHNGSGKSTLLKMLGRHQPPSQGDVLLDGQPLASWSSKSFARKVAYLPQQLPQAEGMTVRELVAIGRYPWHGALGRFGVADREKVEEAIALVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVIAVLHDINMAARYCDYLVALRAGEMVAQGTPDTLMRAETLEQIYGIPMGILPHPSGAAPVSFVY
>NZ_CP051548.1|WP_169040135.1|4960782_4961673_-|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD
MDGLNLISRRRLLTMMALSPLLWQMRSAQAAEIDTQRIVGLEWLPVELLLALGIKPYGIADIPNYNLWVNEPALPAGVIDVGLRTEPNLELLTQMKPSFLVWSAGYGPSADVLARIAPGQGFNFSDGKKPLATARKSLNEMAQLFHMEAAAKAHLDTFDSFIADRKPHFRPRGERPLLMMTLLDARHMLVFTRNCLFQEILDEFGIQNAWQGETSFWGSTAVGIDRLAMYKDVDVLCFDHGNDADMRKLMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNALGGKA
>NZ_CP051548.1|WP_169039928.1|4958803_4960786_-|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MRRPFALLPGLLLAVLLIAGAWLTWLNLNAALPRAQWGQALFSPNVDVIEQMLFHYSLLPRLVISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVSTGAQLGITIVTLWALPGALTTQFAALAGACAVGALVFGVAWGKRLSPVTLILAGLVVSLYCGAVNQLLVIFHHDALQSMFLWSTGTLTQTDWSGVQRLWPQLIGGVVLTLLLLRPLTLMGLDDGVARNLGLALSMARLAALTLAIVLSALLVNAVGIIGFIGLFAPLLAKMLGARRLLARLMLAPLIGALILWLSDQLILWLARVWREVSTGSMTALIGAPLLLWLLPRLRSMSAPSMDVGDNVPTERQNVQWFALAGLVVLLLGVLVALSFGRDAEGWRWISGTMLDDLMQWRLPRIIAALTAGIMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVVMLFFVPGNAFGWLMPAGSLGAAITLLIILIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAKILTWISGSTYHATFEQVIRTGLMMVVLLALVPLCRRWLTVLPLGGDTARSVGMALTTSRIGLLLLAAALTATATMTIGPLSFIGLMAPHIARMMGFRRTMPHIVMSALTGGLLLVFADWCGRMMMFPYQVPAGLLSTFIGAPYFIYLLRKQSR
>NZ_CP051548.1|WP_125125295.1|4957375_4958656_+|glutamate-1-semialdehyde-2,1-aminomutase
MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIERADGAYLYDADGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAQRGLSFGAPTEMEVKMAELVTQLVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCTYNDLSSVRDAFEQYPQDIACIIVEPVAGNMNCIPPKDDFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQSYYDVTPDLTCLGKIIGGGMPVGAFGGRRDIMEALAPTGPVYQAGTLSGNPIAMAAGYACLTEVSQVGVHETLNDLTALLADGLIDAARGQGIPLVVNHVGGMFGLFFTDAPEVTCYQDVVACDVERFKRFFHLMLEEGVYFAPSAFEAGFMSIAHSEEDIRNTVDAARRVFAKL
>NZ_CP051548.1|WP_039078421.1|4956837_4957182_-|iron-sulfur-cluster-insertion-protein-ErpA
MSDDVALPLQFTDAAASKVKNLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQINDGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFVVTNPNATSTCGCGSSFSI
>NZ_CP051548.1|WP_071193674.1|4956165_4956789_+|TRIC-cation-channel-family-protein
MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALAHGPVFWVKDPTDLVVAMVTCMLTIVLVRQPRRLPKWVLPVLDAVGLAVFVGIGVNKAFMAGTGPLVATGMGVLTGVGGGIIRDVLAREVPMILRTEIYATACIIGGIVHSTAAYSFDVPLENAAMLGMVVTLGIRLAAIRWHLKLPTFALDENGR
>NZ_CP051548.1|WP_169039927.1|4955350_4956151_+|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF
MAKHLFRALAALLIFASAWLCAAPRVISLSPANTEMAFAAGITPVGVSSYSDFPPEAKKIEQVATWQGLNIERIVALKPDVVLAWRGGNAERQVDQLERLGIKVLWLDSVTIEQVAESLAGLAQYSPHPKQAQQASTELLAQYQALKKQYAGQTKKRVFLQFGGEPLFTSGKGSLQNEVLELCGGENIFAASRVPWPQVSREQVLAREPHAIVVAGNVSEIPKIEQFWHKQLDIPVIPLTSDWFERAGPRIILAAQQLCPALAQVK
>NZ_CP051548.1|WP_071193676.1|4954659_4955358_+|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKIGIIGAMEEEVTLLRDKIENRQTLTIGGCEIYTGTLNGTEVALLKSGIGKVAAAMGATLLLERCKPDVIINTGSAGGLASTLTVGDIVVSDEARYHDADVTAFGYEFGQLPGCPAGFKADEKLVTAAESCIKQLNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAVAVEMEATAIAHVCHNFGVPFVVVRAISDVADQQSHLSFDEFLVVAAKQSSLMVETLVQNLARG
>NZ_CP051548.1|WP_169039931.1|4967830_4970260_-|ATP-dependent-helicase-HrpB
MSSLPVAAVLPDLLNALQHAPQVLLTAPTGAGKSTWLPLQLLQQGGIDGRILLLEPRRLAARNVAQRLAELLNEQPGDTVGYRMRAQTCVGPNTRLEVVTEGILTRMIQHDPELNGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLVMSATLDNSRLQTLLPDAPLIVSEGRMHPVERRYQALNSHQRFDESVAVATADLLRSQSGSLLLFLPGVGEIQRVQEQLASRVADDVLLCPLYGALSLNEQRKAIFPPPAGQRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDSRTGLTRLVTQRVSQASMTQRAGRAGRLEPGICLHLIGKEQAERAAAQSEPEILQSDLSGLLMELLQWGCQDPVQLSWLDLPPATNLAAAKRLLTQLRALEGDRLSAFGKKMASLGNDPRLAAMLASASGANEVATAAKLAAILEEPPRGGNTDLSVAFSRNQPQWQQRARQLIRRLKSAEGEPDSDLLAPLLASAFADRIARRRGQDGRYQLANGMGAMLDADDALNRHEWLLAPLLLQGSQSPDARILLALPLDIDRLMAACPHIVEPSDSVEWDEALGTLKAFRRSRIGQLTVKVQPLAKLPEEELHQAMLNGIRDKGLDVLNWTPEAKQLRLRLHCAAKWLPEEAWPAVDDASLLASLESWLLPQMGGVHSLRALKALDVGEALKAFLPWPLRQRLDSELPGHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATTPVIAQGRIALVLELLSPAQRPLQITRDLAAFWQGAYREVQKEMKGRYPKHVWPDDPANAAPTRRTKKYS
>NZ_CP051548.1|WP_039078413.1|4970396_4970927_+|RNA-2',3'-cyclic-phosphodiesterase
MSESKRLFFAIELPDATRQEVVRWRAEHFPQDAGRPVAAANLHLTLAFLGEVSAEKQRALETLAGRIRQPGFTLQLDDAGQWLRSRVVWLGCRQSPRGLLQLADMLRAQAARSGCWQSPTPFHPHITLLRDASHAVTIPPPGFHWTFPVTEFVLYESQFAGGRLRYTALNRWTLKT
>NZ_CP051548.1|WP_039078412.1|4970939_4971644_+|DNA/RNA-nuclease-SfsA
MEFSPPLRSATLIQRYKRFLADVITPEGETLTIHCPNTGAMTGCATPGDTVWYSTSENTKRKYPHTWELTQTQQGAFICVNTLRANTLTKEAIQQNRLPGLSGYSALKSEVKYGAEGSRIDFLLQADGRRNCYIEVKSVTLAERECGFFPDAVTLRGQKHLRELMSVAASGDRAVILFAVLHSAVEHFSPARHIDEKYARLLKEAQGQGVEILAVKAELSATNMTLRLPLPFTI
>NZ_CP051548.1|WP_001155227.1|4971824_4972280_+|RNA-polymerase-binding-protein-DksA
MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG
>NZ_CP051548.1|WP_169039932.1|4972406_4973303_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSDSHYIGRFAPSPSGELHFGSLIAALGSYLQARAQQGTWRVRIEDIDPPREVPGAADTILRQLEHYGLHWDGDVLWQSQRHEAYRDALAWLHTRGLSYYCTCTRARIQSVGGTYDGHCRSANNGPENSAVRLVQQHPVLHFHDRLRGELYADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGITEIVRGADLIEPTVRQISLYRQFGWPVPQYVHLPLALNAQGNKLSKQNHAPALPGGDPRPIIIRALQFLNQSATNEWQDLSVDDLLKNAVTNWTLANVPIAVDVNTAFSNASR
>NZ_CP051548.1|WP_072039726.1|4973351_4974770_+|polynucleotide-adenylyltransferase-PcnB
MTLPRCTIFTRVANFCRKVLSREESMVVEASVQPQMTVIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEDTEADRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMRDLDEGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMNISAETAEPIPRLAALINDVPPARLFEESLKLLQAGYGFDTYMLLREYNLFQPLFPTISRFFTENGDSPMERIIAQVLKNTDTRLHNDMRVNPAFLFAAMFWYPLLETAQRITQEGGLAYYDAFALAMNDVLDEACRSLAIPKRITSLIRDIWQLQLRMSRRQGKRAWKLMEHPKFRAAYDLLALRAEVENNGELQRLVKWWGEFQVSAPPEQKDMLDDLGDEPAVRRRHRRPRKRAPRREGSA
>NZ_CP051548.1|WP_110295033.1|4974838_4975324_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MSPTLCYIAIGSNLASPLEQVKAALDAIGEIPQSRVVAVSSFYRTPPLGPQDQPDYLNAAVALETTLEAEALLDHTQRIELQQGRVRKAERWGPRTLDLDIMLFGDQVIQTPRLTVPHYDMKNRGFMLWPLFEIAPALRFPDGMTLSAALTECAADKPALW
>NZ_CP051548.1|WP_169039933.1|4975441_4976233_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKPTTISWLLKCKQEKKRFATITAYDYSFAKLFAEEGINVMLVGDSLGMTVQGHDSTLPVTVDDIAYHTRAVRRGAPHCLLLADLPFMAYSTPEQAFENAAAVMRAGANMVKIEGGRWLSDTVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDAGQTLLDDALALEAAGAQLLVLECVPVELAKRVTDALTIPAIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLSEAGDMRAAVRQYIADVESGVYPGEEHSFH
>NZ_CP051548.1|WP_169039934.1|4976244_4977099_+|pantoate--beta-alanine-ligase
MLIIETLPLLRQHIRRARQEGKRIALVPTMGNLHDGHMTLVEEAKARADVVVVSIFVNPMQFDRADDLARYPRTLQEDCEKLNKRKVDFVFAPVPNDIYPQGTDTQTYVDVPGISTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDYQQLQLIRKMVADMGYDIEIVGVPTVRAKDGLALSSRNGYLTADQRKIAPALSKTMNAMAAKLSAGDRNLEEIIALAEQELNDGGFRADDIQIRDADTLLELAKTSKRAVILMAAWLGQARLIDNKVVDLPL
>NZ_CP051548.1|WP_039078406.1|4977239_4977620_+|aspartate-1-decarboxylase
MIRTMLQGKLHRVKVTQADLHYEGSCAIDQDFLEAAGILEYEAIDIYNVTNGKRFSTYAIAGERGSRIISVNGAAAHCADVGDILIIASYVTMPDEQARSWQPKVAYFDGDNEMKRTAKAVPVQVA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP051548_1	1.1\|1948639\|26\|NZ_CP051548\|CRISPRCasFinder	1948639-1948664	26	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	54785-54810	3	0.885

1. spacer 1.1|1948639|26|NZ_CP051548|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 3, identity: 0.885

agcggctccgttgtctcacttcgcta	CRISPR spacer
agcggctccgttgtctcactgcgttc	Protospacer
******************** **.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1199673 : 1205897

uncultured_Caudovirales_phage(66.67%)

integrase

attL 1194356:1194371|attR 1202505:1202520

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1194356:1194371	attL	NA	NA	NA	NA
WP_169040049.1\|1199673_1201110_+\|integrase	integrase family protein	K7PHM9	Enterobacterial_phage	1.0e-11	27.1
WP_169038787.1\|1201102_1201915_+	hypothetical protein	NA	NA	NA	NA
WP_169038788.1\|1202056_1202263_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_169038789.1\|1202653_1202833_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	4.4e-10	55.2
1202505:1202520	attR	NA	NA	NA	NA
WP_169038790.1\|1202963_1203233_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	1.2e-35	80.7
WP_169038791.1\|1203225_1203414_+	hypothetical protein	A0A2H4JFH8	uncultured_Caudovirales_phage	5.0e-12	79.2
WP_169038792.1\|1203406_1203718_+	hypothetical protein	NA	NA	NA	NA
WP_169038793.1\|1203714_1204083_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	2.5e-55	90.2
WP_169038794.1\|1204079_1205897_+	DNA primase	Q7M2A8	Enterobacteria_phage	1.9e-132	47.7

DBSCAN-SWA_2

1849614 : 1908580

Pseudomonas_phage(37.5%)

terminase,head,integrase,plate,protease,tRNA,tail,transposase,capsid

attL 1845537:1845551|attR 1879346:1879360

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1845537:1845551	attL	NA	NA	NA	NA
WP_039079692.1\|1849614_1851078_-\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
WP_039079693.1\|1851300_1852371_+	AI-2E family transporter	NA	NA	NA	NA
WP_039079694.1\|1852453_1853311_-	formate transporter FocA	NA	NA	NA	NA
WP_169040061.1\|1853446_1853686_-	hypothetical protein	NA	NA	NA	NA
WP_169038951.1\|1853934_1854705_-	helix-turn-helix transcriptional regulator	A0A2I7S9A5	Vibrio_phage	1.4e-39	37.5
WP_023311692.1\|1854839_1855097_+	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	2.1e-16	64.6
WP_169038952.1\|1855096_1857145_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	1.9e-173	48.2
WP_169038953.1\|1857152_1858046_+	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	1.4e-96	59.7
WP_103244968.1\|1858056_1858347_+	hypothetical protein	NA	NA	NA	NA
WP_103244969.1\|1858357_1858591_+	hypothetical protein	A0A0S3UG15	Pseudomonas_phage	4.9e-09	37.9
WP_169038954.1\|1858578_1858776_+	hypothetical protein	NA	NA	NA	NA
WP_103244971.1\|1858765_1859425_+	DUF3164 family protein	A4JWM8	Burkholderia_virus	8.9e-72	67.5
WP_169038955.1\|1859426_1859669_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_169038956.1\|1859649_1859841_+	hypothetical protein	NA	NA	NA	NA
WP_169038957.1\|1859919_1860135_+	hypothetical protein	NA	NA	NA	NA
WP_169038958.1\|1860145_1860865_+	DUF2786 domain-containing protein	A0A0S4L2R2	Pseudomonas_phage	4.9e-15	30.5
WP_169038959.1\|1860861_1861545_+	hypothetical protein	A0A249XQ08	Mycobacterium_phage	3.1e-19	33.3
WP_169038960.1\|1861740_1862106_+	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	4.4e-20	46.2
WP_169038961.1\|1862098_1862314_+	hypothetical protein	NA	NA	NA	NA
WP_169040062.1\|1862313_1862502_+	hypothetical protein	NA	NA	NA	NA
WP_169040063.1\|1862587_1862950_+	hypothetical protein	X5I2N5	Pseudomonas_phage	1.1e-28	67.7
WP_169038962.1\|1863205_1863682_+	regulatory protein GemA	A0A2D1GNN4	Pseudomonas_phage	5.8e-41	59.9
WP_169038963.1\|1863626_1864061_+	hypothetical protein	A0A2D1GNW5	Pseudomonas_phage	9.8e-27	45.5
WP_169038964.1\|1864071_1864605_+	hypothetical protein	NA	NA	NA	NA
WP_169038965.1\|1864689_1865334_+	glycoside hydrolase family 19 protein	A0A2D1GNI0	Pseudomonas_phage	1.0e-64	61.0
WP_169038966.1\|1865324_1865573_+	hypothetical protein	NA	NA	NA	NA
WP_169038967.1\|1865562_1866198_+	hypothetical protein	NA	NA	NA	NA
WP_103244985.1\|1866194_1866440_+	hypothetical protein	NA	NA	NA	NA
WP_103244986.1\|1866436_1866739_+	hypothetical protein	NA	NA	NA	NA
WP_169038968.1\|1866738_1867239_+	DUF1804 family protein	A0A0A1IX73	Pseudomonas_phage	9.8e-47	54.2
WP_169038969.1\|1867301_1868072_-	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_169038970.1\|1868070_1868271_+	hypothetical protein	NA	NA	NA	NA
WP_169038971.1\|1868272_1869973_+\|terminase	phage terminase large subunit	A0SMN6	Pseudomonas_virus	3.3e-195	61.7
WP_169038972.1\|1869972_1871541_+	DUF935 domain-containing protein	L7P7P3	Pseudomonas_phage	2.9e-129	47.2
WP_169038973.1\|1871533_1872805_+\|capsid	minor capsid protein	A0A0M4UTA3	Ralstonia_phage	3.5e-64	41.5
WP_169038974.1\|1872794_1873337_+	phage virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	1.3e-20	38.3
WP_169038975.1\|1873571_1874660_+	hypothetical protein	A0A2D1GNS3	Pseudomonas_phage	4.0e-53	42.8
WP_169038976.1\|1874652_1875048_+	hypothetical protein	J9RWG0	Pseudomonas_phage	2.8e-20	47.7
WP_103244995.1\|1875059_1875968_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2H4J778	uncultured_Caudovirales_phage	1.4e-104	61.9
WP_169038977.1\|1875968_1876421_+	hypothetical protein	NA	NA	NA	NA
WP_169038978.1\|1876433_1876862_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_169038979.1\|1876858_1877509_+	DUF1834 family protein	NA	NA	NA	NA
WP_169038980.1\|1877498_1877717_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_169038981.1\|1877718_1879137_+\|tail	phage tail protein	B7SDP8	Haemophilus_phage	5.0e-104	48.8
WP_169038982.1\|1879148_1879523_+\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	1.7e-27	56.8
1879346:1879360	attR	NA	NA	NA	NA
WP_169038983.1\|1879519_1879918_+	hypothetical protein	NA	NA	NA	NA
WP_169038984.1\|1880037_1882257_+\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	3.2e-73	35.6
WP_169038985.1\|1882256_1883570_+	multidrug DMT transporter permease	F6MIL2	Haemophilus_phage	1.0e-34	26.2
WP_169038986.1\|1883553_1884759_+\|tail	phage tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	3.7e-76	37.5
WP_169038987.1\|1884742_1885345_+\|plate	phage baseplate assembly protein	F6MIL4	Haemophilus_phage	7.7e-38	50.9
WP_169038988.1\|1885405_1885762_+	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	1.2e-25	51.7
WP_169038989.1\|1885761_1886823_+\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	1.7e-77	46.6
WP_169038990.1\|1886819_1887392_+	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	1.1e-36	42.7
WP_169038991.1\|1888107_1888542_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	5.9e-16	36.9
WP_169038992.1\|1888669_1890337_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_039079696.1\|1890562_1890973_-	HycH family protein	NA	NA	NA	NA
WP_079496174.1\|1890965_1891742_-	NADH-quinone oxidoreductase subunit B family protein	NA	NA	NA	NA
WP_039079698.1\|1891738_1892287_-	hydrogenase 4 subunit H	NA	NA	NA	NA
WP_039079699.1\|1892297_1894025_-	hydrogenase large subunit	NA	NA	NA	NA
WP_039079700.1\|1894021_1895611_-	hydrogenase 4 subunit F	NA	NA	NA	NA
WP_039079701.1\|1895615_1896266_-	hydrogenase 4 membrane subunit	NA	NA	NA	NA
WP_169038993.1\|1896278_1897718_-	hydrogenase 4 subunit D	NA	NA	NA	NA
WP_169038994.1\|1897734_1898682_-	respiratory chain complex I subunit 1 family protein	NA	NA	NA	NA
WP_169038995.1\|1898695_1900717_-	hydrogenase 4 subunit B	NA	NA	NA	NA
WP_110294611.1\|1900716_1901337_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_039079706.1\|1901622_1902093_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_039079793.1\|1902092_1902698_-	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
WP_039079707.1\|1902810_1903689_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_039079708.1\|1903705_1904740_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_039079709.1\|1904847_1905561_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	2.6e-37	36.6
WP_169038996.1\|1905684_1906548_+	neutral zinc metallopeptidase	NA	NA	NA	NA
WP_169038997.1\|1906570_1908580_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

2330091 : 2341531

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125124201.1\|2330091_2331498_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.3e-19	31.8
WP_169039108.1\|2331680_2332574_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	2.1e-44	39.9
WP_169039109.1\|2332983_2334072_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-90	50.3
WP_169040067.1\|2334090_2334957_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.1e-109	66.3
WP_169039110.1\|2334981_2335869_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.6e-28	34.0
WP_169039111.1\|2335893_2336859_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_103278812.1\|2336910_2337456_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.8e-55	61.1
WP_169040068.1\|2337488_2338277_+	ABC transporter permease	NA	NA	NA	NA
WP_169040069.1\|2338293_2339634_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.8e-05	22.6
WP_169039112.1\|2339626_2340427_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_169039113.1\|2340430_2341531_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	2.1e-09	23.7

DBSCAN-SWA_4

2683760 : 2698144

Tupanvirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041851605.1\|2683760_2685689_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	6.7e-128	36.9
WP_071845866.1\|2685692_2686235_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.2e-15	32.9
WP_001124225.1\|2686331_2686529_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_013366084.1\|2686628_2686985_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_001386830.1\|2687231_2687276_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_041851604.1\|2687402_2688386_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.8e-34	43.2
WP_125124426.1\|2688400_2690788_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.7e-06	25.0
WP_006820203.1\|2690792_2691092_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_041851602.1\|2691191_2692172_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_169039215.1\|2692391_2692943_+	glutathione peroxidase	NA	NA	NA	NA
WP_169040075.1\|2692939_2693689_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	31.9
WP_071195364.1\|2693765_2694227_+	C40 family peptidase	A0A217EQL1	Bacillus_phage	2.9e-13	35.3
WP_041851598.1\|2694551_2695262_+	EAL domain-containing protein	NA	NA	NA	NA
WP_169039216.1\|2695323_2696766_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.2e-57	36.7
WP_041851596.1\|2696770_2696962_-	hemin uptake protein HemP	NA	NA	NA	NA
WP_041851790.1\|2697097_2698144_-	3-deoxy-7-phosphoheptulonate synthase AroH	A0A0B5IW14	Pandoravirus	7.5e-81	45.9

DBSCAN-SWA_5

3689580 : 3742858

uncultured_Caudovirales_phage(29.41%)

tail,terminase,integrase,plate

attL 3680178:3680192|attR 3746208:3746222

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3680178:3680192	attL	NA	NA	NA	NA
WP_169039548.1\|3689580_3690624_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_039079475.1\|3690620_3692492_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_071195232.1\|3692494_3693061_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_125124899.1\|3693053_3693866_-	protein of avirulence locus ImpE	NA	NA	NA	NA
WP_071195231.1\|3694012_3695008_-	hypothetical protein	NA	NA	NA	NA
WP_039079479.1\|3695029_3695824_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_169039549.1\|3695820_3697605_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_169039550.1\|3697700_3698381_-	hypothetical protein	NA	NA	NA	NA
WP_169039551.1\|3698394_3698841_-	hypothetical protein	H6SUG6	Campylobacter_virus	1.0e-10	35.6
WP_039079483.1\|3698893_3699376_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_169040105.1\|3699783_3700053_-	hypothetical protein	NA	NA	NA	NA
WP_039079485.1\|3700504_3700726_+	hypothetical protein	NA	NA	NA	NA
WP_052249280.1\|3700791_3701454_-	hypothetical protein	NA	NA	NA	NA
WP_039079486.1\|3701548_3703048_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_039079487.1\|3703051_3703576_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_110294789.1\|3703638_3704649_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_039079489.1\|3704661_3705369_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_107223405.1\|3705385_3709000_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_108701536.1\|3709002_3710241_-	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_039079492.1\|3710256_3711600_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_039079493.1\|3711625_3712132_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_039079494.1\|3712154_3712649_-	hypothetical protein	NA	NA	NA	NA
WP_071195223.1\|3713686_3715381_+	alpha,alpha-trehalase	NA	NA	NA	NA
WP_039079496.1\|3715451_3715706_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_039079497.1\|3715916_3716651_+	flagellar brake protein	NA	NA	NA	NA
WP_039079519.1\|3716698_3717313_-	membrane-bound lytic murein transglycosylase EmtA	NA	NA	NA	NA
WP_169039552.1\|3717411_3718323_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
WP_039079499.1\|3718463_3720197_+	potassium/proton antiporter	NA	NA	NA	NA
WP_169039553.1\|3720211_3721282_-	catabolic alanine racemase DadX	NA	NA	NA	NA
WP_132438864.1\|3721310_3722609_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_039079502.1\|3722927_3724460_+	SpoVR family protein	NA	NA	NA	NA
WP_071195219.1\|3724498_3725218_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_039079504.1\|3725571_3726102_+	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_039079505.1\|3726206_3726596_-	Exc2 family lipoprotein	NA	NA	NA	NA
WP_039079506.1\|3726705_3727152_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_039079507.1\|3727243_3727903_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_039079508.1\|3728055_3728325_-	YcgL domain-containing protein	NA	NA	NA	NA
WP_169039554.1\|3728464_3728749_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.2e-12	42.4
WP_169039555.1\|3728748_3728988_-	hypothetical protein	K7P7N3	Enterobacteria_phage	8.3e-20	59.0
WP_169039556.1\|3729078_3729696_-	hypothetical protein	NA	NA	NA	NA
WP_169039557.1\|3729710_3730145_-\|tail	tail fiber assembly protein	K7P7H0	Enterobacteria_phage	4.7e-13	35.8
WP_169039558.1\|3730147_3730408_-	hypothetical protein	NA	NA	NA	NA
WP_169038530.1\|3730400_3730541_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	3.2e-16	90.2
WP_169040106.1\|3730540_3731293_-	translation initiation factor IF-2	A0A2H4J8H6	uncultured_Caudovirales_phage	5.2e-76	55.2
WP_169038531.1\|3731336_3731777_-	hypothetical protein	NA	NA	NA	NA
WP_169039559.1\|3731777_3731975_-	hypothetical protein	NA	NA	NA	NA
WP_169039560.1\|3732088_3732433_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	2.7e-24	49.2
WP_169040107.1\|3732435_3732978_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	2.0e-61	62.9
WP_169039561.1\|3733468_3733801_+	hypothetical protein	NA	NA	NA	NA
WP_169039562.1\|3733865_3735260_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.1e-191	69.5
WP_169039563.1\|3735192_3735981_-	hypothetical protein	G8C7P2	Escherichia_phage	3.6e-11	73.3
WP_169039564.1\|3736093_3736318_+	hypothetical protein	NA	NA	NA	NA
WP_169039565.1\|3736380_3736641_-	DUF1378 family protein	NA	NA	NA	NA
WP_169039566.1\|3736678_3736903_-	hypothetical protein	A0A2H4J182	uncultured_Caudovirales_phage	3.3e-18	57.7
WP_169039567.1\|3736899_3737439_-	hypothetical protein	K7P6W1	Enterobacteria_phage	1.3e-28	57.4
WP_169039568.1\|3737597_3738020_-	hypothetical protein	K7P7B8	Enterobacteria_phage	1.6e-58	74.1
WP_169039569.1\|3738203_3738485_-	hypothetical protein	NA	NA	NA	NA
WP_169039570.1\|3738567_3739356_-	hypothetical protein	NA	NA	NA	NA
WP_169039571.1\|3739837_3740320_-	ImmA/IrrE family metallo-endopeptidase	L7THB5	Pseudomonas_virus	2.9e-19	35.6
WP_169039572.1\|3740337_3740691_-	helix-turn-helix domain-containing protein	L7TKV7	Pseudomonas_virus	7.7e-22	50.9
WP_169039573.1\|3740906_3741146_-	hypothetical protein	S4TVX5	Salmonella_phage	3.0e-14	58.5
WP_169039574.1\|3741142_3741565_-	hypothetical protein	NA	NA	NA	NA
WP_169039575.1\|3741808_3742858_+\|integrase	site-specific integrase	A4JWQ7	Burkholderia_virus	1.5e-57	36.3
3746208:3746222	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4820667 : 4833303

Morganella_phage(20.0%)

integrase

attL 4808215:4808229|attR 4829702:4829716

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4808215:4808229	attL	NA	NA	NA	NA
WP_169039888.1\|4820667_4823427_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.1e-301	57.9
WP_047026871.1\|4823419_4823761_-	hypothetical protein	A0A1B5FPL8	Escherichia_phage	1.3e-34	63.3
WP_169039889.1\|4823770_4824397_-	hypothetical protein	NA	NA	NA	NA
WP_033144715.1\|4824393_4824606_-	hypothetical protein	NA	NA	NA	NA
WP_169039890.1\|4824602_4825427_-	host cell division inhibitor Icd-like protein	Q8SBF3	Shigella_phage	8.1e-14	43.5
WP_109555193.1\|4825429_4826263_-	antA/AntB antirepressor family protein	A0A0P0ZG08	Escherichia_phage	1.3e-22	48.0
WP_033146207.1\|4826276_4826711_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	8.0e-29	54.3
WP_048241341.1\|4826710_4826908_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	3.0e-07	45.3
WP_087855513.1\|4827123_4827843_-	hypothetical protein	NA	NA	NA	NA
WP_087855512.1\|4827986_4829201_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.4e-131	56.5
WP_169039891.1\|4829558_4830812_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.5e-96	46.4
4829702:4829716	attR	NA	NA	NA	NA
WP_169039892.1\|4830823_4831927_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.0e-61	39.9
WP_071195906.1\|4832223_4833303_+	porin	Q1MVN1	Enterobacteria_phage	1.3e-115	59.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP051549

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34214 : 40752

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052958801.1\|34214_35183_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	6.2e-13	32.1
WP_047368856.1\|35471_35897_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-51	72.1
WP_047368891.1\|35909_37199_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.2e-168	71.6
WP_047368857.1\|37243_37564_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	6.5e-20	44.8
WP_016151343.1\|37649_38348_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	4.5e-90	69.4
WP_004206574.1\|38476_38782_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004206572.1\|38792_39998_-	chromate efflux transporter	NA	NA	NA	NA
WP_169040147.1\|40173_40752_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.9e-23	37.7

DBSCAN-SWA_2

63997 : 80045

Shigella_phage(42.86%)

transposase,integrase

attL 54621:54634|attR 74881:74894

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
54621:54634	attL	NA	NA	NA	NA
WP_169040158.1\|63997_64180_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_169040159.1\|64173_65342_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.6e-170	90.5
WP_169040142.1\|65562_66630_+	hypothetical protein	NA	NA	NA	NA
WP_169040160.1\|67077_68061_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	1.1e-41	36.7
WP_169040161.1\|68643_71214_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	5.3e-19	36.1
WP_169040162.1\|71967_73626_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.1e-12	31.5
WP_000537152.1\|74776_75061_+\|transposase	IS3 family transposase	U5P4I9	Shigella_phage	8.9e-13	44.8
74881:74894	attR	NA	NA	NA	NA
WP_169040185.1\|75057_75912_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.6e-79	55.8
WP_169040163.1\|75921_76065_+	hypothetical protein	NA	NA	NA	NA
WP_169040164.1\|76168_76495_-	hypothetical protein	NA	NA	NA	NA
WP_169040165.1\|76764_77019_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_003100881.1\|77078_80045_-\|transposase	Tn3-like element ISPa38 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP051548

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP051549

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection