CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP051884	Cellulomonas sp. 40-2 chromosome, complete genome	3 crisprs	WYL,cas3,DEDDh,csa3,cas4,DinG	0	3	0	0

1. NZ_CP051884

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP051884_1

• CRISPR_ID: NZ_CP051884_1
• CRISPR_location: 948927-949003
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP051884_1

Consensus_repeat	Method
TCGACGGCGGGGGAGCCGACCAC	CRISPRCasFinder

spacers of NZ_CP051884_1

>1.1|948950|31|NZ_CP051884|CRISPRCasFinder
GGCCACTCCGTCCCCGCAGACCCCGGTTCCT

CRISPR arrays and Neighbor proteins around NZ_CP051884_1

CRISPR arrays

The CRISPR arrays of NZ_CP051884_1

>merge|NZ_CP051884|1|948927-949003|CRISPRCasFinder
TCGACGGCGGGGGAGCCGACCACGGCCACTCCGTCCCCGCAGACCCCGGTTCCTTCGACGGCAGGGGAGCCGACCAC

>NZ_CP051884|1|1|948927-949003|CRISPRCasFinder
TCGACGGCGGGGGAGCCGACCAC	GGCCACTCCGTCCCCGCAGACCCCGGTTCCT
TCGACGGCAGGGGAGCCGACCAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051884.1|WP_169164847.1|945180_947616_-|hypothetical-protein	unknown	unknown	gnl|CDD|173412
NZ_CP051884.1|WP_169164853.1|965939_968498_+|alpha-glucan-family-phosphorylase	unknown	unknown	gnl|CDD|340852
NZ_CP051884.1|WP_169164839.1|935323_937351_+|beta-galactosidase	unknown	unknown	gnl|CDD|367090
NZ_CP051884.1|WP_169164844.1|943100_943877_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|225496
NZ_CP051884.1|WP_169164851.1|958279_960457_-|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl|CDD|235445
NZ_CP051884.1|WP_169164849.1|949831_950827_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP051884.1|WP_169164842.1|941222_942677_+|beta-glucosidase	unknown	unknown	gnl|CDD|274539
NZ_CP051884.1|WP_169164840.1|937347_939591_+|alpha-xylosidase	unknown	unknown	gnl|CDD|236731
NZ_CP051884.1|WP_169164838.1|932762_935231_+|glycoside-hydrolase-family-95-protein	unknown	unknown	gnl|CDD|379625
NZ_CP051884.1|WP_169164841.1|940002_941007_-|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NZ_CP051884.1|WP_169164854.1|968494_970600_-|glycogen-debranching-protein-GlgX	unknown	unknown	gnl|CDD|131155
NZ_CP051884.1|WP_169164843.1|942749_943058_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP051884.1|WP_169164855.1|970511_971444_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl|CDD|238847
NZ_CP051884.1|WP_169164846.1|944761_945184_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP051884.1|WP_169166943.1|963770_965747_-|DUF3416-domain-containing-protein	unknown	unknown	gnl|CDD|200482
NZ_CP051884.1|WP_169164845.1|943876_944737_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|131480
NZ_CP051884.1|WP_169164852.1|962022_963768_-|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl|CDD|274140
NZ_CP051884.1|WP_169164850.1|950858_951800_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|225660
NZ_CP051884.1|WP_169164856.1|971440_972400_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl|CDD|224936
NZ_CP051884.1|WP_169164857.1|972403_973396_-|phosphotransferase	unknown	unknown	gnl|CDD|270703

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP051884.1|WP_169164847.1|945180_947616_-|hypothetical-protein	gnl|CDD|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	1.29084e-13
NZ_CP051884.1|WP_169164853.1|965939_968498_+|alpha-glucan-family-phosphorylase	gnl|CDD|340852	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase. This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism.	0
NZ_CP051884.1|WP_169164839.1|935323_937351_+|beta-galactosidase	gnl|CDD|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	2.89438e-175
NZ_CP051884.1|WP_169164844.1|943100_943877_+|alpha/beta-hydrolase	gnl|CDD|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.19071e-12
NZ_CP051884.1|WP_169164851.1|958279_960457_-|1,4-alpha-glucan-branching-protein-GlgB	gnl|CDD|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP051884.1|WP_169164856.1|971440_972400_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl|CDD|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.34145e-77
NZ_CP051884.1|WP_169164842.1|941222_942677_+|beta-glucosidase	gnl|CDD|274539	TIGR03356, BGL, beta-galactosidase.	0
NZ_CP051884.1|WP_169164840.1|937347_939591_+|alpha-xylosidase	gnl|CDD|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
NZ_CP051884.1|WP_169164838.1|932762_935231_+|glycoside-hydrolase-family-95-protein	gnl|CDD|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	1.06815e-21
NZ_CP051884.1|WP_169164841.1|940002_941007_-|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	6.69268e-67
NZ_CP051884.1|WP_169164854.1|968494_970600_-|glycogen-debranching-protein-GlgX	gnl|CDD|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP051884.1|WP_169164855.1|970511_971444_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl|CDD|238847	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.	1.88841e-69
NZ_CP051884.1|WP_169166943.1|963770_965747_-|DUF3416-domain-containing-protein	gnl|CDD|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP051884.1|WP_169164845.1|943876_944737_+|alpha/beta-hydrolase	gnl|CDD|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	1.26799e-22
NZ_CP051884.1|WP_169164852.1|962022_963768_-|maltose-alpha-D-glucosyltransferase	gnl|CDD|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP051884.1|WP_169164850.1|950858_951800_+|tetratricopeptide-repeat-protein	gnl|CDD|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	1.81798e-46
NZ_CP051884.1|WP_169164857.1|972403_973396_-|phosphotransferase	gnl|CDD|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	5.10953e-10

Protein sequences

>NZ_CP051884.1|WP_169164847.1|945180_947616_-|hypothetical-protein
MPEDRMLFPVVNFRGYDREQVDTRMNELERALGEARSQVSSLDERVLQISGELSEAHRQLREAERPTYSGLGSRIEMLLRSAEEQSSDVVQQANAQASDALARARLAAGQLRARAENEVAELIATAKREATEERTTAHAEAESVLTAAQRRAEEMVGSAEREAARIQTAQATEASERRASLERELGTLRATVERETTELRISTEQAAEQLRTTTEAETSALRAEAEHYAQDLRQRADADTSAQRQLAEAETSAQRQQAETDTAELRRRTEAETTELRRQTAAEIAELRTETERWAAEQRSSAAAEAAELRRTTGEEVNRVRAEAAAYADQVRSAAERSATELQQKVAAETSAVRAEADQYSGFVRATADRETAELRAQVAEEIAATRQQAEQELAAVRTEAEQYVAELRASVERETTELRDRVTHETTTQRAEAEQYAADLRATAERETSELRDAAQRETDELRENTQRETTELRENTERAAAELRATTQRETDELREQTRLQVERQLTEAARQAEELTTAARTEAEAMQQQARQALADAELTIATQREEAERADAERHAVARAETEKLVSDAEAHAAAAEQRVAKALEQAEKVRLDSQNQAKELLSNARQNADRVVAEAREHAEKTLSESMSEAERERTTAQRQVEDLNRQRESITTYLDELRNLLGSDPVPNRQTLERADKAQAKFEREATPAAGKSGRTPAKAKARPAPVSAAGPKKAAGGAATEVESTTDGASGTPDTGSTGADAGTTAAPTGNDSGTGSTPADVEATTAADAAGSDAGTGTGSADGDTSAEATPAEQRADGEVEQK
>NZ_CP051884.1|WP_169164846.1|944761_945184_-|hypothetical-protein
MTGPAAADWRDQRREAAAAHEAALVARQRAESDRARALIHEFLVTARERGVAPEPLRAQGYGGRGSFRTGLAGWYLRRDRTVAVGTDGEFYVLTVPGSLTARWRGVSVTPQDPPLVIGAGGKDGESLDLPLALARVLGEG
>NZ_CP051884.1|WP_169164845.1|943876_944737_+|alpha/beta-hydrolase
MVTVVPHVLRPGVAGHTPLVLLHAFPVDSRMWSAVGRLITAGTPVIAIDLPGMGAAPAPDAAPALEAAADAVAALLSGAAPTESADPDRPTDSAPTADPARPEVPAGPAVVAGLSMGGYVALALAERHPELVAALALLDTKAVADTPEAAANRRRIADEAERTGSVDPVRPMVDAVLGDTTRATRPDLVRQLAGWIDEQHPAGIAWSQRAMAARPDRSHVLRGWTRPALVLVGAEDGPTPPEQAAAMAGLLGIEPVVIPAAGHLTAIEQPTAVAQALTTLLIRADR
>NZ_CP051884.1|WP_169164844.1|943100_943877_+|alpha/beta-hydrolase
MSTEIRSLTVLPAHREDIELHTADGLTLVGELARPANPDGSPRTPAATLVTLHPLPTHGGYMDSHVLRKASWRLPALADIAVLRFNTRGTSSPRGTSEGSFDEGRAERFDVHAAIEFAEFHDLPNPWLVGWSFGTELTLMHGLDPLVRGAILLSPPLHRATDADLDAWDADGRPLTALVPEHDDYLRPEEARRRFAQVHQAEIVGVDGAKHLWVGEPYVRRVLNEIVARVRPGFPTPLPTTWDGPSEQADPDPRPEDA
>NZ_CP051884.1|WP_169164843.1|942749_943058_+|hypothetical-protein
MPRSRRSGKRPYNAEHVPLDLDRVGGIRRAESGPDGEWTTQRVRGSDRTFRCPGCDQLIATGTAHVVAWQADSILGDAAALDNRRHWHTSCWEARHRRRPTR
>NZ_CP051884.1|WP_169164842.1|941222_942677_+|beta-glucosidase
MPATRPSGRQFPADFVWGSATASYQIEGAATEGGRGPSIWDTFATVPGAVLNGDTGLVADDHYHRVPEDVALMQEIGLEAYRFSISWPRVQPTGSGEWNEEGIAFYVDLVDRLLAAGINPVVTLYHWDLPQPLEDEGGWTNRRTAYLFADYARKMAEVLGDKIEIWTTLNEPWCSAYLGYASGVHAPGRQDQAASLAAVHHLNLAHGLASTAIREVLGEDATVSITLNLHVTRADSDAAEDLAARHKIDLIANEVFLQPILEGRYPEEIFAQTAAVSDWSFVQDGDLELIHQPLSLLGVNYYSTGRVRKLHGEPKVGDGSPGVDGHKSSVVSTWVGAEDVEWLPQPGPHTAMGWNQEPQGLTDLLVSLHQRYPELPMAITENGAAFADQVSADGRVHDEDRVSYLHDHIDAVGAAMDQGADVRGYFVWSLFDNFEWAYGYDRRFGIVRVDYDTLERIPKDSAYWYSELIRTGTIAPVETAPQLG
>NZ_CP051884.1|WP_169164841.1|940002_941007_-|LacI-family-DNA-binding-transcriptional-regulator
MATIDDVAKAAGVSASTVSYVLSGKRPISPRTRERVERTIRELGYRPHAGARALASSRSNIIALMVPFRPGINVQIIMQFVGGVVTAARSHDHDVLLLTQDDSNGVDRVASSSMADAIIVMDVEAEDERLPALRSLKQPSVLIGVPSDPSGLCCVDLDFTAAGRSAVRTLTDAGHHRIALIGASQERIDRRANYAIRMRAGVAEEAELRGAELTMLPCEPNFAGGVVALERVLDETPGVTGLVVHNELALPGVMSALERRGVRVPEDISVVAIGAADTGTGLPQPLTGIDVPGEDIGRVALEMAMAQLEGDALSTTRLVSPEVTDRGSVSAPAV
>NZ_CP051884.1|WP_169164840.1|937347_939591_+|alpha-xylosidase
MKFTDGYWMTRPGVSLLKPVGVDEVVAGDGSLTVYAASAPLTKRGDTLNRPLITITLDSPAEGVLGVTVEHFRGANDPGPHFELTGSGGPVAKVDVPATGPATLATGNLTATVATEGGWSLDIAVDGRRVTGSDARGLAIVNADGTPYVREQLDLGVREHVYGLGERFTAFVKNSQTVDVWNADGGTSSEQAYKNVPFLLSDKGYGVFVDHPEHVSFEIGSEAVSRTQFSVAGQRLRYYVIAGPDPKDVLRRYTALTGRPAAVPDWSYGLWLSTSFTTSYDEGTVMSFIDGMAERGLPLSVFHFDCFWMRQFHWSDFVWDPATFPDPEGLLRRLHERDLKVCVWINPYIAQRSHLFDEGRELGYLVKNPDGSVWQWDMWQAGMALVDFTNPEAVAWYQGKLRTLLDMGVDCFKTDFGERIPTDVRWHDGGDPQAMHNYYTQLYNKAVFDLLVAERGEGEAVLFARSATAGGQQFPVHWGGDCESTFVSMAESLRGGLSLSMSGFGYWSHDIGGFEGTPDPAVFKRWLAFGLLSSHSRLHGSDSYRVPWAFDDEAVEVTRRFTELKLSLMPYLARVGRTAHTEGLPVMRPMVLEFPADPATATVDTQYMLGESLLVAPVFSADGEVDVYVPEGTWTSLIDGSRITGPRWHRQRHDFLSVPLLVRPDSVLPVGARTDRPDYDHADGVTLRLFDLVDGHASTTTVGQVSFRVTRTGDTITATATGATAPWSIQLGDRVVAAEGDTATLAI
>NZ_CP051884.1|WP_169164839.1|935323_937351_+|beta-galactosidase
MHPDTPRRNARNAFSTLVRERGLLYGGDYNPEQWPAEVWPEDVALMSAAGVNLVTVGVFSWGRLEPQPGEWNLGWLDQVLDLLAAAGIAVDLATPSASAPPWLAVDHPETSAVNQDGVRMSHGSRNHFCPTSPVYREHVLRIVRVLAERYADHPALAMWHVGNEFGQVCYCDLCADAFRAWLQRRYGGLDELNRAWGTAFWSQHHGRWSEVIPPRRAPYLHNPTQELDYRRFASDQLRDLYRVQAELLRDATPAVPVTTNFMGFFPLVDYQSWTDDLDVVADDWYADPADPRSPARAALTHDLMRSLGDGRPWVLMEQATSAVNWRPHNLPRSAGTMLVDSVRAVAHGADAICYFQWRASLAGAERFHSAMLPHAGPDTDLHRAVIEQGDVLRRLRPVAGTRVEARAALVFDWSSWWAGRAPGSPSDRMDAVDRLLDAYEPLWRAGVAVDVVPPGADLDGYSLVVVPGLYLVSDQDAANLARVPERGGVLLVGPFSAVADPDAHIRAGRFPGPWTEVLGVSGEQHRPLPEVGVEVRSELIGDFTAHTWSELLRADDADVLARYAGAGLAGRPALTRRTHPGGGSAWYLSTVPPADALNRIVLAAAEAAGLRAPVDCPPEVEAIRRGDVLFLLNHGTRPRTVRLPYPATDLIGGTRTTGDLVLPAESAAAMIEEDR
>NZ_CP051884.1|WP_169164838.1|932762_935231_+|glycoside-hydrolase-family-95-protein
MTTDRPGRELLYRRPSSGWLDGLPLGNGRTGAMVQASADRLHLSLNDVTAWSGGVGSATRRGAITAERAAAARAEAAALWDQGRIVAAERALAALQQDYVQAFMPFADLVLRIDGVDGPLTRRLRLRDGEHVVVAGGITQRTLVSAVDGILLHRLTADRPVEIDLSLGTRLGDPRVTASADGAVLTLALPADVAPGHEPTEPALRWRVPGVQPLTGALAVSWRHDGRLDDGQCDGPSHDGCPRLRFTGVRHLELRLATATDFDGIGRPPRGSATERATSVLAGAAALDADTLHGRHLADHRALMDRFRLDLGPATHAGCPAAPDPRPVCRDPRPGPDAPRSAPDPDARGRATDPGSAALDTDERVLAAHAHPDGPLTADPDLLALLVDYGRYLVIASSRPGGLPATLQGLWNADPRPPWSSAYTLNINTEMNLWAAGPTDLAFTADPVLDLVEALADRGADTARRLYGARGWVAHHNTDAWANTLPTAGDASWALWPMGGVWLVRQLDELRRLDAVDDAWCRRLWPVAVGATEFALDLLTERPDGSLATWPSTSPENTFATDAGPAALTRGTGMDRVLLHELAASVRGLADRLALTHPVLDELDVALPRVPGPRVAADGTVLEWDTDRPATEPRHRHLSHLMFAYPGAGPGEHAAAVAATLDQRGDDSTGWSVVWKAAVRARLGDGDRAGTLLALALRPAWDAERGPHAGGLYRNLLAAHPPFQIDGNLGLPAVVADLLASGVDGTVHLLPALPVALADAGAVGGLVVHPGIVVDLRWSQGRPTAVSLTARSDRSSGHRLVRWRDRRWLVQLTPGVRTSVPL
>NZ_CP051884.1|WP_169164849.1|949831_950827_+|hypothetical-protein
MSARRRHGAVALALAAVIALAGCANPVPEPQPEAVPAQAPPVLDQTQSADILAQVGEVLAAGDTALDPSGLSARLSGPALAIRAAEYTRAKATDGQRPPITIPTNAQTTITPDTTSWPRTQMVVTEQPADLQAPLLLVLIQESPRDDYHLWGWARLGEGVQMPATAEPETGSPMPTPDDASLLVTPQDVVGQFADVLTNGDASPYAATFGTSFFRTAIESARAQTVQSLQAVATVSETVSPEAGAVTALGTVDGGAIVVGQMTTVTTATLSQGSITLNDPLDAALAGKDSVSQNLVRTWTDVVAFYVPPAGSDTGVQVLAAEHARTAVTGE
>NZ_CP051884.1|WP_169164850.1|950858_951800_+|tetratricopeptide-repeat-protein
MSQNPAGDPRFNMRGAVDLSSLARPATPAPGSPGGLPAPGPWVVDVDTEGFPALVQSSTGHPVIVLLWASWSEASTALATTLGTLIGEYGGRLQLARIDADANPQVAAAFQSQSVPTVVAVLAGQPLPLFQGAPDAAQIKDVLDQVLQAAEANGITGSAPGGEGAPATAPEPEEPPLPPLHQAAYDAIEADDFPAATAAYEQALRENPKDDLARAGLAQVGLLTRTRGVDLAAVRKAAADAPTDIDAQLAVADVDVLGGQIEDAFARLIDTIRTTFGPDRERLRTRLVDLFEVVGADDPRVQDARRALASALY
>NZ_CP051884.1|WP_169164851.1|958279_960457_-|1,4-alpha-glucan-branching-protein-GlgB
MSRGPSPVTVDPDTLRAVAAGTHHEPHAVLGPHRTPNGVVVRTLRPLADAVVIVTPTGRTPAEHEQDGIWTAVLPDSDVPDYRIEVTYGADTSTVDDPYRFLPTIGELDRHLISEGRHEQLWQVLGANVQHYPGALGPVDGTAFAVWAPNARAVRVVGDFNHWQGASHAMRSLGSSGVWELFVPGVGAGARYKFEVIGPDGHARQKADPLAKGTEVPPSTASVVVESEYTWSDDAWLARRAATDPHAGPVSIYEVHLGSWRKGLSYRDLATQLTEYVVEMGFTHVEFLPVAEHPFGGSWGYQVTSYYAPTSRFGHPNDFRHLVDTLHQAGIGVIIDWVPAHFPKDEWALARFDGTPLYEHPDPMRGEQLDWGTYVFDFGRSEVRNFLVANATYWLEEFHADGLRVDAVASMLYLDYSREPGQWRPNVHGGRENLEAIAFLQEANATAYRRTPGVMMIAEESTAWPGVTAPTDNGGLGFGLKWNMGWMNDTLRYLAEQPINRRYHHHEATFSLVYAFSEHFVLPLSHDEVVHGKGSIMRKMPGDDWQQRAGVRALLGYQWSHPGKQLLFMGTEFAQGTEWAESRSLDWYLLDHPEHRGVQAVVRDLNALYRRHPALWALDHSPQGFEWIDANDADHNVLAYLRRDDKGDVVAVVVNFSGVPHEGYRLALPQGGTWTEALNTDATEYGGSGVGNLGQVEARPEPYHGRAFSTVLRVPPLGVLFLTPA
>NZ_CP051884.1|WP_169164852.1|962022_963768_-|maltose-alpha-D-glucosyltransferase
MAPASDSGAPSTQAIAISALPPRRQPEVPERTEVSGLSDDPEWYRTAVFYEVMIRSFSDSSGAGSGDLRGLTERLDYLHWLGVDCLWLPPFFPSPLRDGGYDVADFTAVASQYGSIEDFTALIQAAHDRGIRVVVDLVMNHTSDQHPWFQASRSDPDGPYGDFYVWSDDNTRYPDARIIFVDTESSNWTFDPVRRQYFWHRFFSHQPDLNFDNPRVAEAMIDVARFWLRLGVDGFRLDAVPYLFERDGTNGENLQETHQFLRRLRAAIDEEFPGRIMLAEANQWPEDVVEYFGTEAEPECHMCFHFPVMPRIFYALRDQRATAIVDILADTPRIPAGAQWSTFLRNHDELTLEMVSTEERASMYGWYAPDSRMRANIGIRRRLAPLLDDSRKEIELAHSLLLSLPGSPCLYYGDEIGMGDNIWLPDRDAVRTPMQWTPDRNAGFSTADPGKLYLPVNQSLVHHYNNVNVEAQLAQSTSLLHWVRGMLAVRRRYPALGRGDYQAVAADNEAVLAFTRDDGHQRLLVVANLASTARSATITAPALAGRTLRDVFGGGDFPAVSEDGTLTLTLGSRDFYWLAVQ
>NZ_CP051884.1|WP_169166943.1|963770_965747_-|DUF3416-domain-containing-protein
MGRIPVVDVSPVVEAGRWPAKAAVGEAVPIQATVFREGHDAVAATAVLVDPDGRDHAKALMVDIAPGLDRYEARLVPDRPGRWGFRVEGWSDPYGTWSHGAPLKVEAGVDVELMLAEGARLLERAAEPLVGAAATTLTDAATALRDGARPAQARLAAGLTDAVRAVLAEHPVRELLSASPTYPLVVDRTLALSGAWYEIFPRSIGARYDEATGAWSSGTLRTAAEDLPRIADLGFDVVYLTPIHPIGTTHRKGRNNTLETRPGDPGSPYAIGSPDGGHDAIDPTLGTFEDFDAFVARAKDLGMEIALDLALQCSPDHPWVTEHPEWFTTRLDGTIAYAENPPKKYQDIYPLNFDNDPEGIYAAVRAVLQVWIDHGVTAFRVDNPHTKPLSFWERLLADIRAAHPEVVFLSEAFTRPAMMLNLARIGFHQSYTYFTWRNTKEELAEYLTEVSGEHGSWMRPSFWPTTHDILTPFMQTGGAAGFAIRAVLAALGSPTWGIYTGYELVEDVPRPGVEEQIDNEKYEFKPRDWSQAEPIGIAALLRDLNTIRRAHPALRQLRNLTVHPTSDPNLLAFSRHLPADLSPTGRADTVLVVVNLDPHGAHDGTLDLDLHALGITDAESRFVAHDVLSQEVYAWDAHPWVRLDPYQRVAHVIQVERV
>NZ_CP051884.1|WP_169164853.1|965939_968498_+|alpha-glucan-family-phosphorylase
MRAIRRFTVRTSLPAALADLDELAHNLRWSWHAPTRDLFARIDPEVWAQVHGDPVALLGALAPERLAELAADPAVVTAVRSAAADLREYVTEPRWYQRRQESENLPSSIGYFSPEFGITAVLPQYSGGLGILAGDHLKSASDLGVPIIGVGLLYGAGYFRQALTRDGWQVESYPVLDPDGMPLTLLREADGTAATVRIALPGDRTLHAHIWVATVGRVPLLLLDSDVPENDEQARKVTDRLYGGGGEYRLQQELLLGVGGVRALRVWSRLSGAPAPEVYHTNEGHAGFLGVERIRELVTGAGLGFDEALEAVRAATVFTTHTPVPAGIDRFEAGLVGQYFGGAHADAGVPVDRVLALGAEDYPGGDPLMFNMAVMGLRLGGRANGVSLLHGEVSRGMFDGLWPGFDDSEVPITSVTNGVHAPTWVDRRLSDLAAERLTEDDDWLRPDAISDAELWGVRHTLREALVTEARRRVRKSWGERGASPAELGWVDGVLDPDVLTIGFARRVPTYKRLTLMLRDPERLTRLLTDPERPIQLVIAGKSHPADEQGKRLIQQLVRFADQADVRHRIVFLPNYDIAMAQSLYPGCDVWLNNPLRPLEACGTSGMKAALNGGLNLSILDGWWDEWFDGENGWAIPTADGVEDADHRDDLEAAALYDLIENQVAPRFYDRDAHGLPQRWLAMVRHTLATLGPKVQATRMVAEYVDRLYAPAAAAGRELAAADLTGARELAAWKSRVRAGWQGVRVDHVESAGLGEVPQVGDTLHVRAYVSLGDLDPTDVEVQVVHGRVSESDELDAFSTDPLTLTESYEAGRHAFAGDVTLEASGPFGYSVRVVPRHAGLSSVAEIGLVANA
>NZ_CP051884.1|WP_169164854.1|968494_970600_-|glycogen-debranching-protein-GlgX
MSAPTPTRLGVHVVEDGVEVAVLAPHADAIDLCLFDDAGTERRIRLEGPELGVFFARVPGIRAGQRYGLRAHGPWDPVNGLRYNPAKLLVDPYAVGLTGELGYGPETYGHRVEDGDPYGPADDRDSAGHVPYGVVLDLDQDDAADPTTNRPHVPWSDTVIYEAHVRGLTARHPEIPADERGTYAALGHPALIQHLHRLGVTAVELLPLQACAPEPHLVSRGMTNYWGYNTLGFFAPDPRWASAAARAAGPAAVLAELRTAIHRLHEAGIEVLLDVVYNHTPEGGLGGQHLSLRGLDSAVYYLHDGAHPAALADVTGCGNTLDFRRTEVVRLALDSLRHWVQQVGVDGFRFDLAVTLARGHGGFDPDHPFLVATATDPALQDVKLIAEPWDIGPGGWRTGQFPVPWSEWNDKFRNSARSFWLADPARATHGDAGHRVRDLATRLSGSVDLFGHSDPQLRRGTRASVNYVTAHDGFTLADLVAYEHKHNEANGEQNRDGTDDNRSWNHGIEGPVEATAVAADILPIRRRSIRNLLGTLLLSAGTPMLTAGDEMGRTQQGNNNAYCQDGDLSWLPWELAPWRQDLLATTRHLTALRRTHPALRGERFYTGRPLDRPDLSWFDPQGEPFTHDRWHDGDLRTLQMLRISGDDQALLVLNGALEPQQVALAPGADWRLAWDSVWEHPDEATPGDEVMEPLSLRLYVG
>NZ_CP051884.1|WP_169164855.1|970511_971444_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MASACGASTATSTPSSTTCTPSRVGVGALTGPFCCLSRAGNVHRVKIVVCVKHVPDIQADRELGPDHRVVRTGGDGTINELDENALEAAAQIAEGSDEDVEVVVITVGPDDAEDAARRGLQLGADAGVHVLDDDIAGSDVFATARVLAAAIRRVGDVDLVLTGMAGLDGLTSLLPATLADLLDLPALTLAAEVTVADGEVTVRRDLDHATEVLAAPLPALVSVTDRANEPRYPNFQAIMAARKKPVETIALADLGLEPGEVGAAGSRTAVLTAAPRPPREDRVLVTGGADAGRELAAWLVEQGLVREDVR
>NZ_CP051884.1|WP_169164856.1|971440_972400_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSEVLVLLDHTEDGDLRPAALEAVTAGRALGDVQAVWIGERMSADVPEQLGRYGASVLHRVRVTDADARLTAVQGAALVAVATHDVVLGTSSFVGKEVAAHLAVATGAGVVSDATAVRRDDSGRIVADKTVLAGTWTTQCAVLTSPAIVLLKAGAVVAEPVDGPAATVREHTVSAAAASRGIRVVEHTPTAASDRPDLGSADVVVVGGRGTDGDFGPLEELADVLGGAVGATRVATDEGWIGHEAQIGQTGVTVTPRLYIGAGVSGAVHHRGGMQASGTIVAINPDPEAPIFEIADYGIVGDLFEVLPAVSAELRARRG
>NZ_CP051884.1|WP_169164857.1|972403_973396_-|phosphotransferase
MSADDATTPTPAPLAFSGQRLDWRDLPRGVRTRIQELAGAQVTAEMSATTGFSPGFAAVLELADGRGVFVKAVSPEQNPQSPELARAEVRAAQAIPAQVPAPRLLWHDDDGDWVLLGFEVATGRPPLLPWRPAELRRVLEAMAVLSEATPLPGHRLPATDEHFAADFRGWHTLAEGPGSALDRTADWAEGTGEWLRAHLDTLCTWSEDATAALVGDRLVHGDLRADNVMIDVEHVALIDWPHASVGAAWADLAFMVPSIAMQGGGRPQEIFWAQPMSAGLEPERLRAAVAGLAGYFTHGALQPPPPGIPNLRRFQQAQAEQALLWLRDLG

Crispr_ID: NZ_CP051884_2

• CRISPR_ID: NZ_CP051884_2
• CRISPR_location: 2584886-2584961
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP051884_2

Consensus_repeat	Method
TGGCCGGAACTGCCGACCTCGGCC	CRISPRCasFinder

spacers of NZ_CP051884_2

>2.1|2584910|28|NZ_CP051884|CRISPRCasFinder
CGACGTCGGCAGTCCGCCCGCCGGTGGG

CRISPR arrays and Neighbor proteins around NZ_CP051884_2

CRISPR arrays

The CRISPR arrays of NZ_CP051884_2

>merge|NZ_CP051884|2|2584886-2584961|CRISPRCasFinder
TGGCCGGAACTGCCGACCTCGGCCCGACGTCGGCAGTCCGCCCGCCGGTGGGTGGCCGGAACTGCCGACCTCGGCC

>NZ_CP051884|2|2|2584886-2584961|CRISPRCasFinder
TGGCCGGAACTGCCGACCTCGGCC	CGACGTCGGCAGTCCGCCCGCCGGTGGG
TGGCCGGAACTGCCGACCTCGGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051884.1|WP_169166167.1|2596495_2597275_+|aldo/keto-reductase	unknown	unknown	gnl|CDD|381297
NZ_CP051884.1|WP_169166154.1|2575008_2575611_+|GtrA-family-protein	unknown	unknown	gnl|CDD|377229
NZ_CP051884.1|WP_169166159.1|2579916_2580702_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222
NZ_CP051884.1|WP_169167102.1|2585035_2586514_-|PAS-domain-containing-protein	unknown	unknown	gnl|CDD|378836
NZ_CP051884.1|WP_169167104.1|2591174_2592188_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NZ_CP051884.1|WP_169166160.1|2580701_2583341_+|FtsX-like-permease-family-protein	unknown	unknown	gnl|CDD|225669
NZ_CP051884.1|WP_169167103.1|2586675_2587125_+|DUF2505-domain-containing-protein	unknown	unknown	gnl|CDD|378476
NZ_CP051884.1|WP_169167101.1|2583480_2583846_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP051884.1|WP_169166162.1|2587682_2588945_+|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270303
NZ_CP051884.1|WP_169166153.1|2573781_2574927_-|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl|CDD|235674
NZ_CP051884.1|WP_169166155.1|2575658_2576969_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP051884.1|WP_169166157.1|2577817_2579083_+|sensor-histidine-kinase	unknown	unknown	gnl|CDD|226951
NZ_CP051884.1|WP_169166164.1|2590138_2591053_+|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NZ_CP051884.1|WP_169166166.1|2595683_2596499_+|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NZ_CP051884.1|WP_169166161.1|2584271_2584520_+|WhiB-family-transcriptional-regulator	unknown	unknown	gnl|CDD|376791
NZ_CP051884.1|WP_169166165.1|2592257_2595572_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|143443
NZ_CP051884.1|WP_169166163.1|2589041_2590142_+|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NZ_CP051884.1|WP_169166168.1|2597271_2598288_+|peptidase-M15	unknown	unknown	gnl|CDD|350615
NZ_CP051884.1|WP_169166158.1|2579093_2579807_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NZ_CP051884.1|WP_169166156.1|2576972_2577665_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP051884.1|WP_169166167.1|2596495_2597275_+|aldo/keto-reductase	gnl|CDD|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	3.96238e-118
NZ_CP051884.1|WP_169166154.1|2575008_2575611_+|GtrA-family-protein	gnl|CDD|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.95902e-25
NZ_CP051884.1|WP_169166159.1|2579916_2580702_+|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.22875e-109
NZ_CP051884.1|WP_169167102.1|2585035_2586514_-|PAS-domain-containing-protein	gnl|CDD|378836	pfam12282, H_kinase_N, Signal transduction histidine kinase. This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with pfam07568, pfam08448, pfam02518. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this.	1.73639e-54
NZ_CP051884.1|WP_169167104.1|2591174_2592188_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.03983e-100
NZ_CP051884.1|WP_169166160.1|2580701_2583341_+|FtsX-like-permease-family-protein	gnl|CDD|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.88927e-21
NZ_CP051884.1|WP_169167103.1|2586675_2587125_+|DUF2505-domain-containing-protein	gnl|CDD|378476	pfam10698, DUF2505, Protein of unknown function (DUF2505). Members of this family are all Actinobacteria. The function is not known.	2.42629e-38
NZ_CP051884.1|WP_169166162.1|2587682_2588945_+|extracellular-solute-binding-protein	gnl|CDD|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.27278e-31
NZ_CP051884.1|WP_169166153.1|2573781_2574927_-|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl|CDD|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	3.99245e-162
NZ_CP051884.1|WP_169166155.1|2575658_2576969_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.72372e-37
NZ_CP051884.1|WP_169166157.1|2577817_2579083_+|sensor-histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	7.04708e-42
NZ_CP051884.1|WP_169166164.1|2590138_2591053_+|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.87747e-73
NZ_CP051884.1|WP_169166166.1|2595683_2596499_+|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.04738e-30
NZ_CP051884.1|WP_169166161.1|2584271_2584520_+|WhiB-family-transcriptional-regulator	gnl|CDD|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	2.73419e-27
NZ_CP051884.1|WP_169166165.1|2592257_2595572_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl|CDD|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
NZ_CP051884.1|WP_169166163.1|2589041_2590142_+|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	7.31016e-81
NZ_CP051884.1|WP_169166168.1|2597271_2598288_+|peptidase-M15	gnl|CDD|350615	cd14814, Peptidase_M15, Metalloproteases including zinc D-Ala-D-Ala carboxypeptidase, L-Ala-D-Glu peptidase, L,D-carboxypeptidase, bacteriophage endolysins, and related proteins. This family summarizes zinc-binding metallopeptidases which are mostly carboxypeptidases and dipeptidases, and includes zinc-dependent D-Ala-D-Ala carboxypeptidases, VanX, L-Ala-D-Glu peptidase, L,D-carboxypeptidase and bacteriophage endolysins, amongst other family members. These peptidases belong to MEROPS family M15 which are involved in bacterial cell wall biosynthesis and metabolism.	3.90485e-19
NZ_CP051884.1|WP_169166158.1|2579093_2579807_+|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.38104e-67
NZ_CP051884.1|WP_169166156.1|2576972_2577665_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.21889e-82

Protein sequences

>NZ_CP051884.1|WP_169166161.1|2584271_2584520_+|WhiB-family-transcriptional-regulator
MDWRHEAACLTEDPELFFPIGNTGPALLQIEEAKAVCRRCDVVDTCLKWALESGQDAGVWGGLSEDERRALKRRTARQRRAS
>NZ_CP051884.1|WP_169167101.1|2583480_2583846_-|hypothetical-protein
MLCALLLVEVLALVAAAVASVVMILRGSELPGPLVFMAVMALGIGALLVAAARSLWQGGARWARSPVMFWQVLLIVLSLGWMGVDGSLWTVLVLLLAVVCAVTLVLKPVVAWTLPRPTSAD
>NZ_CP051884.1|WP_169166160.1|2580701_2583341_+|FtsX-like-permease-family-protein
MFRLTLAQMRRSIGRLAAAGIAVLIGTAFVAASLLAGSAIASISTDSITASFGDADLIIRGGGDLTDEDIAAVRALPGIAAVDPQVQASGIEFSVGDSAISQTVIPVPSSHRLQSQRITEGAFPAADGELSLPADTAERLGVDVGDTLTVRYYAWAEPTDAGTAATTATAAATGDDLITVPREEQVTLVGLTNDPNSAWASVGGAAEATLHDTLVWATSTEQAVDGAPVLSASGTRWAMVALRDDADAGAVRGSIESVIGADGQDDSAAGVYTRQEAAEKSLGGSDGAGPVTAVVLSFAAIALLVAGLVIANTFQVLVAQRTRTLALLRCVGAVRGQIRGSVLLEAAILGLVSSVAGLVVGTGLVQITLWVLGRANLPFPVPQSADITAVSVLVPLLVGVLVTVIAALTPARVATRVAPIAALRPVDAPAARSRAGRVRLVFSLLLIIGGVGLLAAGVTIVSKLGNLGGLGLSLLGGAASFIGLLVSATFWMPRLVSAVGSLTGRLGMPARLAAANTGRNPARTAATSTALLIGVTLVAMMSTGAVSARTTLDHELDSRYPVDIAVGGDATIDTAGNVEYAPLPAGALEKVADTPGVAAARTVVSEDITVGGSAIQTMVVSTDAADELLRNTDLAAGITDDTIVLPLSFARSVGVDDGDAVTLTRGDESVDRTVRIESLDGWEALITPGTADVLGFDAEPSQIWATVSSVDDSGTVLQEIQNRFLTTAVPVNGAAVERANYQRAIDTVLAVVIGLLGVAVVIALVGVTNTLSLSVIERRRESATLRALGLTRRQLRASLAIEGVLIAGVGAVAGILLGLLYGWAGVASVLSMVGTVSLSVPWSDLGLVLFIALAAGVLASVIPARSAARTPPVAALAEA
>NZ_CP051884.1|WP_169166159.1|2579916_2580702_+|ABC-transporter-ATP-binding-protein
MDTSAFSTTDARPAVRARALTKTYGSGAAEVHALAGVDVDFAAGQFTAIMGPSGSGKSTLMHLLAGLDAASSGAAYLGDTDVTQLSDDALTRLRRDRVGFVFQSFNLLPMFTAEQNILLPLELAGQKADRAWFDTLVGTLGLGERLGHRPSELSGGQQQRVAIARALIAKPEVIFADEPTGNLDSRSGAEVLSFLRRSVRELGRTIIMVTHDPAAAAYADRVVLLADGRIAGDIQDPTPEAVLTGLDALRQLETTTPAVGA
>NZ_CP051884.1|WP_169166158.1|2579093_2579807_+|response-regulator-transcription-factor
MSDVIRVGLVDDQQLVRAGFRLVIDSQPDLDVVLEAGDGDQAVRALMPGTPQSRSLGPVDVVLMDVRMPQMDGLTATARIIDSATPEHPAPKIIVLTTFDLDEYVLSAIRAGASGFLLKDAPPEDMLQAIRTVHAGDAVIAPSSTRRLLEHLVTALPAEQPEAGAAQEALASLTDREREVLVLMARGRSNTEIGAELYVAEATVKTHVGRVLAKLGARDRVQAVVVAYETGLIVPGS
>NZ_CP051884.1|WP_169166157.1|2577817_2579083_+|sensor-histidine-kinase
MSWWERVTQWQDRHGFAIDLLVVFLSAPIVLSIAFAIQGRWIDVALAAGFWLPLGWRRRTPVTSVVTVYAAGLLSLPTNGPIVFPGTLSVLIALYSVTIFGPVWAHRAAIIAAVVGCGGLGLVFGWLAARGGVGGIEQAIGISILIGGFGIALCVATWAFALTRRSRRELIATLRDRAERLEVERDQQATIAAAAERTRIAREMHDIVAHSLSVVVAQADGGRYAAAADPEAATRSLTTIAETGRAALADMRRLLGVLREDPDPRTGSVPTVPTGPTVPTVSQLAPSTPQPAEHDVEQLIEQVRGSGVRASLVRMGTARRLPPGMGLTVYRICQEALTNVLKHAGPEPSVTVLVQWGVRSLVVEISDDGRGASAESDGLGHGLLGMRERAAMFGGTVSSGPRPGGGFRVRAELPLPTGSAT
>NZ_CP051884.1|WP_169166156.1|2576972_2577665_-|response-regulator-transcription-factor
MTQVLLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDRASEADLVVLDLGLPDMDGLDVARAIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTGQDPTEEEELRGQDVRVDVAAHRAFQGERELHLTAKEFDLLRVLVGSVGTVVARETLMREVWGSDPTGSTKTLDMHVSWLRRKLGDDASSPRYISTVRGMGFRFETGEGQRG
>NZ_CP051884.1|WP_169166155.1|2575658_2576969_-|HAMP-domain-containing-histidine-kinase
MRRRVLQATIAAVTVAVVLLGFPLAFIGAQYIRETEVSQLQTRASDVARMIDGRLAEGTPLSDAMLEPYVERDGTSVSLYVVTEDGARFQAGPEVPSRPETVTVTSASGARVTLYAEWWDLFLLSGRVVGLVVAAALVAFAAGIAMAIWQANRLAAPLVYLAASAEQLGSGQVRPQLEPSGVEEIDLVAAELARSADRMAGRLAAERQFASDASHQLRTPLTALSMRLEEIMLATDDEEVREEARISLEQVERLVRVVDDLLTNSRRAQGGTTEAVRLLDVVHQQEEEWRPTFEAEGRELRIEVDPRVQVLVTPGALAQVLATLIENSLRHGGGTTTVRSREGASRAVVLEVADQGEGVDDDLAPRIFEREVTSGKGTGLGLALARDLAAGDGARLELAQRRPAVFALFLTGVPKAMDPDVVLPRGSVISPRTRRR
>NZ_CP051884.1|WP_169166154.1|2575008_2575611_+|GtrA-family-protein
MTSGSLLDGPRPQRTFRDRWNDTLRARVVELARFGSVGSVAFVVDLGTYNLLRFGPVALFSEQPITARIVAVILSTVVSFLGSRYWTFADQRSARQGREFGLFVAINVVGIAITVGALAFSHYVLGLSGPWSDNIANIIGIVLGTIVRYLGYKAFVFTGTATLPTQLAEIGQQAAAPHVIDIIGITPAQVTDTIHRATED
>NZ_CP051884.1|WP_169166153.1|2573781_2574927_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MTAPVVAVVGGGQLARMMAPAATALGLHLRVLVEDAVSSAAQVVVDAPVGAAGDPVAVERLVSGAAVLTFEHEHVPNTLLTELGDRGVSVQPGPDALVHAQDKIVMRTRLTALGVPCPRWAALDSAADLSAFLDAATGERAAVVKTARGGYDGKGVRVVRDAAEVDDWFDAASAGTGAPLLAEELVPFTRELAVLVARTPSGEVRTWPVVESVQRDGVCAEVIAPAPGLDPATAAAAERIGRTVAEGLGVTGVLAVELFELPGGGLLVNELAMRPHNSGHWTIDGAVTSQFEQHLRAVLDLPLGDTAARSPWTVMVNVLGSTREALTDALPLIDPRVKVHLYGKAVRPGRKLGHVTVSGDDLDSVLADARRAANLVMGVDA
>NZ_CP051884.1|WP_169167102.1|2585035_2586514_-|PAS-domain-containing-protein
MSELVQRHSDLDAADLEWLHLLVGDWQVISDLAFADLVLWLPTRDGDFVAIAQCRPSTGATVHYDDVVGSMPPEGQRGQLSQSLTEMRAQRSREPRWFGSYAVREEAVPVVRDGRAIAVIARQTNLGGVRTPSRLELNYVEAADDLMGMIVRGEFPLPDAATGPRRGAPRVGDGLIRLNSEGEVLYASPNALSCFHRLGAMDDLVGRSLVEVVADLVEQQHSQVDESMPLVLTGRAPWRTDIEAHGVALSLRAVPLTEGKERIGAVLLCRDVSELRRRERELITKDATIREIHHRVKNNLQTVAALLRLQARRMDVPEARAALEEAMRRVATIALVHETLSQTLDETVQFDDLVGRSLRLAADVASAGASVRTVVQGSFGAVSAEDATALALVLTELVTNAVEHGLAGRESGTVEISADREDDVLSVTVADDGGGIPANAGAGTGLGTTIVQTLVTNELRGSIDWSARDGGGTQVLLRAVLRAPGREANTVA
>NZ_CP051884.1|WP_169167103.1|2586675_2587125_+|DUF2505-domain-containing-protein
MLADPVYVRAKVAASGGEVLHVDVTPGEGGAFTVTTRRALPTDLIPPQARAFIGDRLEVRQAEAWEAADPDGARRGTVAVEIAGAPVRMTGTVALIPGGESSRVVYDGELKANVPLFGAMVEETAAKAVRTALEAEEAVAREYVRTTGD
>NZ_CP051884.1|WP_169166162.1|2587682_2588945_+|extracellular-solute-binding-protein
MAIAGATSVALLATACSSGGSGDGESSDGKITLTVSTFNEWGYDDLLDEYMELNPDITVVHDKAATSDEAREKFNTGMASGSGLADVAGVEVDWMPEIMQYEDQFTDLTSDSVEGRWQDWKTAQATTPDGKLLGYGTDIGPEAIAYRADLFEAAGLPSDPASVAELFGGEDSSWDDFYAVGDQFMAAGTGVPFYDASSTIYQGQINQVEKSYEDPDTNEIIALDNPEVKDIYQGVLDHADLSAGLSQWSEDWTAAFQNNGFAVMLAPSWMLGVIEGNAAGVEGWDIANVFPGGGGNWGGSFLTVPAQSEHPEEAKALADWLTAPEQQIKAFQTTGNYPSQVEAQKSDELAGITNEFFNNAPIGQIFAEQADRISVNPYKGPQYFAINTEMADAINRVTVDKTDDAASSWEKFETAVKALG
>NZ_CP051884.1|WP_169166163.1|2589041_2590142_+|sugar-ABC-transporter-permease
MATSTAPAPVSPGSVDDPRPPRKIGFRQQLGKWDVKLSPYLYISPFFLLFAVVGLFPLLYTAWVSVHEWSLLGGQGDFVGMENFSFILQQPFFWKALGNTFSIFVLSTIPQMIAALIIAAMLDANLRAKTFWRMGVLLPYVVAPVAVALIFSKLFADGSGVINTLLGYVGIDPVGWHSQSLPAHVAISTMVNFRWTGYNALIFLAAMQAIPRDLYEAATIDGAARWRQFRSITIPMLRPTVIFVVITSTIGGLQIYDEPRMYDQAGKGGSSGQWLTLTLYLRDLGWRQNNLGRAAAVAWMLFLVIIVFAILNFLLTRLIASSGARKAKKQDTKLAAIPAASSPSATPVTDQVIEPGTDDTSGRTAR
>NZ_CP051884.1|WP_169166164.1|2590138_2591053_+|carbohydrate-ABC-transporter-permease
MSTSIPMLEQSAGRGAARAAARKRKQTQTSEGRRAGWVTYAILTIVILGSAYPLYYALQLSSSTASEIAQNPIPGLGLGGNLLDNLRRVMDANINLPQAFLNSVIVAVVTSASVVLFSTLAGFSFAKLRFRGRGPLLVFVIATMAVPTQLGVVPLFIVMRELGLVGNLLSVILPGLVTAFGVFWMTQYLESALPYELIEAARVDGASMIRTFWHVALPAARPAAAMLALFTFIGSWTNFFWPSIVLGTQNPTLPVALQLLQASFFKDMSLIMAGVVISVIPLLVLFVIAGRQLVAGIMAGAVKG
>NZ_CP051884.1|WP_169167104.1|2591174_2592188_+|LacI-family-DNA-binding-transcriptional-regulator
MTPLHTAPTLEQVAERAGVSRSTASRAINGGDRVSPEAMAAVADAVSALGYTPNRAARSLVTRRTDSVALVVPEPDERVLSDPFFAGVLNGVSLALSDSDLQLLLLIARPDDAARTVRYLRAGHVDGAIIVSHHRDDAIDRALEDSGLPTVFMGRPFTTRSSLSLIDTDNVGGARLATEHLISIGRRRIATITGPADMSAGIDRLEGWRQALRAAGLPDHAVVTGDFTLDGGAQAARELVERFPEVDAVFIASDLMAAGAMPVLSAAGRSMPEDLAIIGYDNSGLAVTTKPALTTITQPVVAMARAAGAELIAQLRGEPPRTAPMIFEPELVVRDSA
>NZ_CP051884.1|WP_169166165.1|2592257_2595572_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MQDAQRRTEDDHAMTTAALTDRAIALATRWTEATEADATPAERRATERLAALVADPAGLELAVRFVDRVARPEDVRVAAAELVDLGERAGDARGFLGAADRGLLSLGSRLAPLLPQVVVPAARIRLRQLVGHLVADAGPGLAGHIARARRDGFRLNLNLLGEAVLGEEEAARRLRRVQQLVVRPDVDYVSVKVSAVASQLSTWDTAGSVARVVDRLRPLYRVAAAHGTFLNLDMEEYRDLEMTLRVFEDLLADPELHDYQAGIVLQAYLPDTSDALDQLTGIARARTATGGAGIKVRLVKGANLAMERVEAELHDWQQAPYGSKPEVDAHYLRLVDTALHPDRIEALRVGVASHNLFHVAYSHLLAEDRGVRAGVDIEMLQGMAPAQARAVQRDAGQVLLYTPVVARDDFDVAISYLVRRLEENAAPENFLHALFAGEQLTGLDAQRAAFRAAVADSATVSTTPRRRPRPAARPTDDPVPFHNTADTDPAVPASRDWAATLVAHDVPAPEGAQPLTTRQQVDAAVDRARTAAPLWSARTPAERAAVLRRIAAELEAARGDLVATMVHEGGKTVAEADPEVSEAIDFARYYAARTLDLADGAVPGARFHPHGVTLVTPPWNFPVAIPTGSVLAALAAGSPVLIKPAPQTPRCVRVAMAAVRRALDAHGITEDAVQVVLTDEGDTGRHLITHPGIDRLLLTGALETARLFAGWRPELDVYAETSGKNALVITPSADVDLAVADLVRSAFGHAGQKCSAASLAILVGSAGRSDRLRRQLADAVTSLRVGPADDLGTTMGPLIEPAQGKLLRALTTLDEGESWLVQPRRLDAEGRLWSPGVKLTHPGSWFHRTECFGPVLGVIRVDTLEQAIAVQNDVALGLTGGLHSLDPDEIAQWLDRVEVGNAYVNRHITGAVVQRQPFGGWKASVVGPGAKAGGPHYVAQLGRWQDDPEIAALDDDAWLAWAVADDARCWAEEYGIDHDPTALAAEENTLRYRPVPELTVYVAADGRERDLRRVLAAARIAGVPVHVERGDDLARRIADGSVHGRVRVIGSAPELRAAAADRVGEVTVLDGPVLAAGERELLTVLREQAVSRTRHRFGHIDPTR
>NZ_CP051884.1|WP_169166166.1|2595683_2596499_+|AraC-family-transcriptional-regulator
MPHRPPLAPSPLLRALTPALLTLAEDLTGTMFCVKDTEGQYVLVNDAFVRRTNERSRRGVVGRTAVQLFDPLLAARYDAQDRTVLTEGRELRRELELIRRPGGTPGWYLTSKSPVRAEDGTVLGLVSISQALRGQDADPETIASLHRVADLVRERIAAPPSVADLATAAGCSAATLDRRLRRVFGLSPQQYVLRARVDHAAALLGGTDLPVAEIAGAVGFYDQASFTRTFGRLTGETPAQFRRAARDADAGQPATAGLPWPTPPARDTMGT
>NZ_CP051884.1|WP_169166167.1|2596495_2597275_+|aldo/keto-reductase
MTAANIPTIQLPGGAMPLLGLGTWQSEGDDAERAVITALELGYTHIDTATGYGNQAQVGRALAAVDIDRDHVFVTTKLPPDHAGRERQTLTESLAELGTDHLDLWLIHWPPNKQATPETWQQFIAARDEGLVRSIGVSNYSIAQIDELIAATGEAPAVNQIPWSPTDWDADLVAAHHERGVAIEGYSPFKRTDMSAPVLTEIAEAHGVSPQQVVLRWHIDHGIVVIPKSVHRERIESNLDVLGFQLSADELARIDALGA
>NZ_CP051884.1|WP_169166168.1|2597271_2598288_+|peptidase-M15
MTSPSAPDPVGSEGTRPPGPEPASPAGEFPRRARRLGRRHRRRTRLVAAAAALLLVASAAVGAGWALTRAAGPAPIDADALALSATLTAAEQDFLADRTRAADLDAARRGLERQAERTAAAAAAAAEAEAAAHAEALAAAQAADAQAAADAAAREQENARASAAPPGAPTHPRIAGWVDGRPVDSAGNVLWVTSVPTADGDGSNGHMPAAAMCAIGWGTDQLGFTQYLRCDAADALTALNDAYRAAFGASLDLDLTYRSYADQVAMKAALGGLAATPGTSSHGLGLALDVQEWPETYGFGTERYQWLVTHGPTYGWYAPERVREGQPFAEYWHFEYGG

Crispr_ID: NZ_CP051884_3

• CRISPR_ID: NZ_CP051884_3
• CRISPR_location: 2666338-2666418
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP051884_3

Consensus_repeat	Method
GTTCGGGTCGGCGTACTGCCCGTAGCG	CRISPRCasFinder

spacers of NZ_CP051884_3

>3.1|2666365|27|NZ_CP051884|CRISPRCasFinder
CGGCTGCTGTCCCGGCTGGGCCGCCGG

CRISPR arrays and Neighbor proteins around NZ_CP051884_3

CRISPR arrays

The CRISPR arrays of NZ_CP051884_3

>merge|NZ_CP051884|3|2666338-2666418|CRISPRCasFinder
GTTCGGGTCGGCGTACTGCCCGTAGCGCGGCTGCTGTCCCGGCTGGGCCGCCGGGTTCGGGTCGGCGTACTGGCCGTAGCG

>NZ_CP051884|3|3|2666338-2666418|CRISPRCasFinder
GTTCGGGTCGGCGTACTGCCCGTAGCG	CGGCTGCTGTCCCGGCTGGGCCGCCGG
GTTCGGGTCGGCGTACTGGCCGTAGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051884.1|WP_169166226.1|2662017_2662980_-|DUF2236-domain-containing-protein	unknown	unknown	gnl|CDD|378343
NZ_CP051884.1|WP_169166228.1|2663664_2664507_-|PHP-domain-containing-protein	unknown	unknown	gnl|CDD|223686
NZ_CP051884.1|WP_169166224.1|2658668_2659982_+|MFS-transporter	unknown	unknown	gnl|CDD|340863
NZ_CP051884.1|WP_169166238.1|2675912_2676437_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP051884.1|WP_169166236.1|2673695_2674919_+|galactokinase	unknown	unknown	gnl|CDD|223231
NZ_CP051884.1|WP_169166221.1|2656840_2657512_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP051884.1|WP_169166225.1|2660169_2661918_+|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223587
NZ_CP051884.1|WP_169167112.1|2653505_2656760_-|ATP-dependent-helicase	unknown	unknown	gnl|CDD|223288
NZ_CP051884.1|WP_169166232.1|2668978_2670073_+|acyltransferase	unknown	unknown	gnl|CDD|224748
NZ_CP051884.1|WP_169166239.1|2676553_2677384_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP051884.1|WP_169166237.1|2675139_2675916_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP051884.1|WP_169166227.1|2663044_2663668_-|MarC-family-protein	unknown	unknown	gnl|CDD|225006
NZ_CP051884.1|WP_169166235.1|2672496_2673699_+|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl|CDD|238341
NZ_CP051884.1|WP_169166231.1|2668414_2668909_+|DUF1003-domain-containing-protein	unknown	unknown	gnl|CDD|377629
NZ_CP051884.1|WP_169166229.1|2664544_2666068_+|aminopeptidase-P-family-protein	unknown	unknown	gnl|CDD|238520
NZ_CP051884.1|WP_169166230.1|2667126_2668422_+|magnesium-transporter	unknown	unknown	gnl|CDD|225148
NZ_CP051884.1|WP_169166234.1|2671715_2672495_+|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl|CDD|224268
NZ_CP051884.1|WP_169166223.1|2657854_2658562_-|hypothetical-protein	unknown	unknown	gnl|CDD|205967
NZ_CP051884.1|WP_169166222.1|2657566_2657794_+|DUF3107-domain-containing-protein	unknown	unknown	gnl|CDD|378634
NZ_CP051884.1|WP_169166233.1|2670096_2671272_+|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl|CDD|378455

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP051884.1|WP_169166226.1|2662017_2662980_-|DUF2236-domain-containing-protein	gnl|CDD|378343	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236). This domain, found in various hypothetical bacterial proteins, has no known function. This family contains a highly conserved arginine and histidine that may be active site residues for an as yet unknown catalytic activity.	1.78029e-46
NZ_CP051884.1|WP_169166228.1|2663664_2664507_-|PHP-domain-containing-protein	gnl|CDD|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.02524e-34
NZ_CP051884.1|WP_169166224.1|2658668_2659982_+|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.54053e-14
NZ_CP051884.1|WP_169166236.1|2673695_2674919_+|galactokinase	gnl|CDD|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	3.84054e-119
NZ_CP051884.1|WP_169166221.1|2656840_2657512_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.15391e-14
NZ_CP051884.1|WP_169166225.1|2660169_2661918_+|DEAD/DEAH-box-helicase	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	2.82657e-152
NZ_CP051884.1|WP_169167112.1|2653505_2656760_-|ATP-dependent-helicase	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	4.54356e-36
NZ_CP051884.1|WP_169166232.1|2668978_2670073_+|acyltransferase	gnl|CDD|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.81238e-15
NZ_CP051884.1|WP_169166227.1|2663044_2663668_-|MarC-family-protein	gnl|CDD|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	6.3098e-43
NZ_CP051884.1|WP_169166235.1|2672496_2673699_+|galactose-1-phosphate-uridylyltransferase	gnl|CDD|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	9.74789e-124
NZ_CP051884.1|WP_169166231.1|2668414_2668909_+|DUF1003-domain-containing-protein	gnl|CDD|377629	pfam06210, DUF1003, Protein of unknown function (DUF1003). This family consists of several hypothetical bacterial proteins of unknown function.	5.68882e-39
NZ_CP051884.1|WP_169166229.1|2664544_2666068_+|aminopeptidase-P-family-protein	gnl|CDD|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	1.37345e-100
NZ_CP051884.1|WP_169166230.1|2667126_2668422_+|magnesium-transporter	gnl|CDD|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	8.3378e-43
NZ_CP051884.1|WP_169166234.1|2671715_2672495_+|DeoR/GlpR-transcriptional-regulator	gnl|CDD|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.20405e-81
NZ_CP051884.1|WP_169166223.1|2657854_2658562_-|hypothetical-protein	gnl|CDD|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	1.05922e-36
NZ_CP051884.1|WP_169166222.1|2657566_2657794_+|DUF3107-domain-containing-protein	gnl|CDD|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	6.26812e-35
NZ_CP051884.1|WP_169166233.1|2670096_2671272_+|Mrp/NBP35-family-ATP-binding-protein	gnl|CDD|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.68423e-120

Protein sequences

>NZ_CP051884.1|WP_169166229.1|2664544_2666068_+|aminopeptidase-P-family-protein
MSESSSTEQSLADRGSNRSQRPQSAAFIDWVTSGWAERPASTAERGAAADFTAARRARLSAQFPGQRLVIPAGAFKVRSNDTDYRFRPHSAFAHLTGLGAEQEPDAVLVLHPVEDGAGDEVPGGGRSRHHAVLYMRPLASRDTEEFFADARYGEFWVGARPTLDDMATVTGIATAHSNELRDALAKDVGPDGVRLLVVPEVDEAVEAVVEEIRSTPQAELDARLVEALSELRLIKDEHEVAELRSAVAATAAGFEQMVRRLPEAVAHRRGERVIEGTFLAKAREEGNYVGYETIAAAGAHATTLHWTDNDGQVRTGELVLVDAGVEVDSLYTADITRTLPVTGTFTADQRRVYQAVLDAADAAFAVAVPGNRFRDVHAAAMEVIAARLAEWGMLPVSAEESLSPEGQQHRRWMVHGTSHHLGLDVHDCAQARREMYLDAVIEPGMVFTIEPGLYFQADDLRVPAELRGIGVRIEDDVLITADGNENLSAALPRTPDEVERWMATLLP
>NZ_CP051884.1|WP_169166228.1|2663664_2664507_-|PHP-domain-containing-protein
MRIDLHTHSNVSDGTESPAVLMASAAAAGLDVVALTDHDTTAGWAEAAAAVPGTGVALVRGTEVSALVGGVSVHLLSYLHDPEHPELAGMIARTRDARQHRGRAIVELLAEDYPISWADVAAVQQPGTVVGRPHIADALVALGIVPDRTAAFDTLLSARAGYYVPYYAPDAVDVVRAIRAAGGVPVFAHPGADGRGRVVADRVIEELVDGGLFALEVRHRDHDDAQRARLTALADRLGVAVTGSSDYHGAGKPNRLGENLTAPDVLGRIESEGRTPVVRA
>NZ_CP051884.1|WP_169166227.1|2663044_2663668_-|MarC-family-protein
MSAVLDWRLFSEVFITLFVIMDPPGTVPIFLALTGTMTKQQRSKAARQAILVAFGVILVFAVFGQGLLSYMHISLPALQASGGLLLLLVAMELLTGKSEDPQPSGNSKVNVALVPLGTPLLAGPGAIVATMVFVQQSDGTAADWISIGLGIVAVHICLYLAMRFAGAINRVLGDSGTTLVTRIAGLLLAAIAVQLVADAVRAFIAAG
>NZ_CP051884.1|WP_169166226.1|2662017_2662980_-|DUF2236-domain-containing-protein
MLSLRERLSGALLDRVAGPHGHSIRDRIHGTPGDRWFGPDAPLRRVHGDASMFVGGLAALLLQSWHPRAMVAVAAHSGYRGDPWGRLQRTSAFLAVTAFGTADHAGQATRAVRQIHAGISGFSEDGEPYAASDPHLLRWVHVAEVHAFLTAHQRFGARPLSAADCDLYVAQAARTARELGVIDPPESVRELRAQLDGFVPELRGSAAARDAATFLLREPPLPVAARLPYRGLVLAAIGLLPRACREPLGLPDRVWVDRDIAPALGQFLTATIRWALAAQPPPPTPDEPGAPASAHPAPVPQPPAASEPADEESGPARPHA
>NZ_CP051884.1|WP_169166225.1|2660169_2661918_+|DEAD/DEAH-box-helicase
MPVAARGLRVPRDVRPATRTSEESFVTTTDTSAPLPEDVAIETIDTTAASVQAENVTFADFDVRPEIVAALADAGITAPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGVPLLHRVIAPGEDGWDTFPRQGKPQALVIVPTRELAVQVAGDLQTASKRRSVRVALLYGGRAYEPQIEMLNRGVEVVVGTPGRMIDLMNQGHLDLSAVRCVVLDEADEMLDLGFLPDVEKLLARTPASRHTMLFSATMPGAVVAMARRYMTQPTHIRANQPDDEGATVKNIKQVIYRAHALDKVEMLARILQAKDRGLTIVFARTKRTAAKVADELVDRGFAAGALHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVVNYQCPEDEKTYLHRTGRTGRAGHKGTAVTFVDWDDVPRWSLIDKALGLGIPDPVETYSSSENLYADLDIPVGTTGRLPRGQRTRAGLDAEVLEDLGETGKRHSSGRSEAGRGDRGGRSGGERGGRSEGGRGGRSGGDREGAREQRADRPARQRTRRSADADAPANEAPAAASTEGTEGGDAPRRRRRRRRGGSGSGESTTES
>NZ_CP051884.1|WP_169166224.1|2658668_2659982_+|MFS-transporter
MHALSAYSRLFKLTGPLYVLVAFLGRLPMAMAQVGTLMLVFRATGSNEVGGVAAGALAVANAVGAPIAGMLCDRHGQRIVVLVQSLAGTAGLIGLVLLAHAGAPNPAMIAMSAALGAVLPQVGPLARVRWRPLAARSGGDQRRLVDAAFSYEGAADEASFALGPALVGIAAVLVSPAGALITAAVLLAVFGTAFALHPTARLTGPAVHAVTTVPAMPPVSAAPGTPGEAPTHAPVRLDGRFLTVGLVVLILAQWSVGVLFGATQTGTNALADSVGKAGVTGLVHAMLGVSSAIAGIATAFIPARVRQERRMLVASIALVALSWPLLLVHSLGPLVAAVAVLGFAIAPFMISVYSQAEHAVPPARSALAMTLLAGATSIGYACGAGVAGSLADSSGHTAAFGVTVGATVLALLLALSRQRGVRRAAPEPQPVEQPATV
>NZ_CP051884.1|WP_169166223.1|2657854_2658562_-|hypothetical-protein
MTSAAHDGRPEAAADRSDTVELLGLVAHLQHVAFGRLAEDAREAPTTEQQLELSRLAAAAVQRRDRVLARVGELGGDPERSLGAYTRLLDDFDNRTQPSTWWERLLRSYVAEGVSDDFCRIAAGAVDDVTRELLLEVLDDAAHAELAVAELETAGAQDEVLVSRLALWGRRLVGEALGVVQQAMAGHPSLARLVGRRDGAPEPVAAEETPATDPKLFGELTAEHTRRMSRLGLTA
>NZ_CP051884.1|WP_169166222.1|2657566_2657794_+|DUF3107-domain-containing-protein
MDITIGVQNLPRELVIDSAQSADEIAAAVEAALGGSKSTLELTDARGRRVIVPSASIGYVEIGTENKGTVGFGAL
>NZ_CP051884.1|WP_169166221.1|2656840_2657512_+|TetR/AcrR-family-transcriptional-regulator
MATPTPGQRRPARMPRDLRRAQVLRVAQELFTAEGYHHVSMDDIADRAEVSKPVLYRHFPSKLDLYLTVVDARGTDLLSTVDAAIDQVQDARDAITGVVLAYLHFVDRTGEAAALLFESDVTHDPDVRARVERATDLVTERLTDVLTGVPALSPAPAGVLAQCLAAMAQQVATRRLRDPGSPDARQTAALVTRLAWGGVRDFLPPEDSAQGERSAVRPSSDLG
>NZ_CP051884.1|WP_169167112.1|2653505_2656760_-|ATP-dependent-helicase
MLSAPRLVRPALADVAPPVALGADQRAAVDLLLSGARSVLVTGAAGSGKTELVVETVAAALSAEDGWATGLRADDVLVLAASRRAAADLRDRIGSRVRRTSGQAMVRTAASAAFAVLRQRAVLLGDPPPALISGPEQDLALAELLAGHLAGEGVELVWPEGVPPETIGLRSFRGELRDLVMRAAERGLEPVDLARLGRTHDRPAWVAAAVLYQEYLDVTGLRGTTPDIGARYDPAVVVEEAAQTLRHWEEDLPGRPRPRWRLVVVDDYQEATEATARLLRVLVDDGARLLLVADPDAAVQTFRGATPALVGRADAAGDGAGEFGATRLVLDRVRRHDGELRAVAGRVAERIAVVGGAQHRRATGAPAEVSSTGAPAEASAPSRTVRAAVLPSAAQEAAYLAHALRSAHLERGVPWEQMAVIARSGGQVTALRRALGSASVPVAVVGSDVPLKDEPAVRPLLDALRVVLGDELGGADLDAEQAARLCCSPLGGLDAVGLRRVRRALRAEEIAGAGDERRGRTSDELLVEALGDPLRVATLPLVSRRPMERLATVLARGREAARAPGADPQTVLWALWDTAALADPWRRAALAGGAGGARADRDLDAVLALFRAAETYVDRMPQSPPAAFLAWVESQELPADTIAARARRDAVSVLTPAGAAGREWELVAVAGVQEGVWPDLRLRDSLLGAQALVDVLAGRSDDHGADHGAAARAAVLADELRSFYVAVSRARSLLLVTAVADAEEQPSPFLDLVEPQEEDDDPRKVGAPAPLDLRGLVGSLRARLEHTARLGAPDPAAARVLARLAEAGVPGADPAQWHGLAPVSTDEPLWPEGERVPVSPSRIETAGTCALRWALEAAGGTAPNSSRQTLGTLVHSIAQRFPRGTRAELAAELDRRWPELGLGDGWPATLERRRADGMIDRLAGYLAQAGDPLAVEASFELPLDRALVRGSIDRVESAGEDGAVRVVDLKTGRTIAKAEEAATNPQLGAYQLAVDAGRVEGLPPEAHAVGAQLVYVTDQNKAAAIRTQDGLGPEPETSWARTHIEEVAERMAASTFHATVNGMCDRCPVRRSCPIRDEGGQVVQ
>NZ_CP051884.1|WP_169166230.1|2667126_2668422_+|magnesium-transporter
MSGAGTRVFVARLAGTPVFDPIGDQVGRVRDVVVLLRPKGAPRAVGLVIEVPGKRRVFVPLTRVIAIDPGQVISTGLVNMRRFEQRAFETLVVGELFDRTVPLTDGSGTATVEDVAIERQRNGDYLVTKLFVRRHRPGRGGLLRRRGEPELIDITDVAGLARTTENQGAALLLAQYDELKPADLADVMHDMGTTRRLEVATALDNERLADVLEELPEDDQVAILSGLERTRAADVLEAMQPDDAADLLGELPDDEQAELLGLMEPEEARDVRRLLAYEDNTAGGLMTTEPVILGPETPIAAALAHVRRRDLTPALASMVFVVRQPLETPTGRFIGVVHLQRMLREPPHEPLGSIVDTDIDPVPPETPLLGVTRRMATYDLLAIPVIDDERRLLGAVSVDDVLDHLLPEDWRETDEEVQPEAPATVQGGTRG
>NZ_CP051884.1|WP_169166231.1|2668414_2668909_+|DUF1003-domain-containing-protein
MAERLDTPKAARRSFLPRLQEDAFGKISEGIARFMGTPLFLFYLTVFCLLWLAWNSWGPENLRFDSAANGFTALTLMLSLQASYSAPLILLAQNRQTDRDRVQAEQDRQRAERNLADTEFLAREMAALRIALSEVATRDFVRSEMRNLLEELAEEREGLPPDQR
>NZ_CP051884.1|WP_169166232.1|2668978_2670073_+|acyltransferase
MASSSPDLRVETRTRLYSLQWLRFAAALAVVFYHAATYESILRGSSWALGYVPGWLGAVGVALFFALSGFLMASAMQRYEAPQFLLHRLVRIYPPFFVVAGLVIVAGIWSPLKPPIDVFALSLLPYGGAAYPLGVEWTLVFEIAFYVFVAVLIALRRQKSAASVLIGWLGLILIHNVLRPDDLSLNVFPAHQLPFVGITTAFAFGMLLPLIVKKAPHPVVAGIVGTALWLFGSSQGTTGARWGLGLGAALLVLALARYDGWRPVFGDTQVGRLGNRLGNYSYMLYLCHLPVIRTLYALLPGVGVVRMFVLTITAAVLVSIPLGELDMWMYRRLKKRVDAMSPTLRTVLASVFVGLFALATIVFF
>NZ_CP051884.1|WP_169166233.1|2670096_2671272_+|Mrp/NBP35-family-ATP-binding-protein
MDAMTAALDHRDPEAVAAAVRAALEHVIDPEIRRPITELGMVRSVDVDTSADAGAIVTVGIDLTTAGCPMRDTITKDVTGAVQALDGVHEVRMAMGVMSPEQRAQLTERLRGGAEPVIPFTQPTSLTKVYAIASGKGGVGKSSVTANLAAALASDGLRVGVVDADIYGFSLPRMLGVTQPPTRVDEMLLPPIAHDVKVISIGMFVPPGQPVVWRGPMLHRALQQFLSDVFWGDLDVLLLDLPPGTGDIAISVAQLLPGSELIVVTTPQTAAAEVAERAGSIAAQTRQQLVGVVENMAWLEQQDGTRLELFGSGGGQRVAENLSKLSGANVLLLGQIPLDIQLREAGDGGTPVVLSDPDSPAAVALRDVARTLASRTRGLAGKSLGLTPIRH
>NZ_CP051884.1|WP_169166234.1|2671715_2672495_+|DeoR/GlpR-transcriptional-regulator
MLASQRQDRIVAEVRDRGAVRVADLVELLDVSEMTVRRDITELDRAGLVRRVHGGAVAPDTLARPTDEPGFQAKTSWAAAEKESIAALAAQEIAPGQAIALSAGTTTHLLAQRIAAEPELRPLTVVTNSLPVAETLHGVPAVDVILTGGSRTPSDGLVGPVADAALATLRVDRLFLGVHGFDASGLMTPNLAEAATDRALLHAAAAVTVLADHTKWGVVGLAHIAPLDAVDTVISDDALPTEARTALTDAGCVLRTKEH
>NZ_CP051884.1|WP_169166235.1|2672496_2673699_+|galactose-1-phosphate-uridylyltransferase
MTDSTLLTPEVRRTRTSMADGRDLFYFDDSPAYVSGEHTRRLDDPRPLPDRFAPVVGEDGVARPVTGPELRRDPLTGDWIPMAAHRMNRTFLPPADANPLAPARPGAAYQDGEIPDTDYDVVVFENRFPSLMAVPGVPDEVTLRDGEELWPTRPAAGRCEVICFSSDPTASLRTVSPRRMRTIVEAWADRTAALGELPGIEQVFAFENRGKEIGVTLHHPHGQIYAFPYLTPRTEAMLAQAREHHDRTGRLLGRDVLDAELRAGERVVLQSEHWIAYVPFAARWPVEVHLAPRRDVPDLPALTDAERDDLAGVYLELLRRLDLFFEQPDGTPIPLPYISGWHQAPVRAGRELSRLHLQLFSVLRAPGKLKYLAGVESGMAAWISDTTPERIAARLKELAR
>NZ_CP051884.1|WP_169166236.1|2673695_2674919_+|galactokinase
MTTWIDAWQPADGADRARALFTERFDAEPNGVWSAPGRVNLIGEHTDYNGGLCLPFALPHRTYVAVRPVDSDRIRLISAQEEGIREVDLSTVAPGTVQGWPSYVAGVAWALRQAGHAVRGFDIAVDSCVPYGSGLSSSAALECAVAVALDELFDLGLAATDQGRTTLTAVCVRAENEIAGANTGGMDQAVSLRGRAGHALELDCLDDSVRHVPFDLTGHDLALLVIDTRAEHSHAGGEYAARRAECEQAATLLQVRTLREITPDGLGDALAGLARLTGPEGDGSAAAEVLVRRVRHVVTEIARVQEFVELLAADRVDEVGPAMDASHASLRDDYQVSCRELDLAVDTARDAGALGARMTGGGFGGSAIALVRTGDVESVAEAVAAAFAGAELRAPTFLVATPEGPAA
>NZ_CP051884.1|WP_169166237.1|2675139_2675916_+|hypothetical-protein
MRARLRLIDRIVGSTMTIAFTVAALIVFDPAAGEAVAYSSSVSMRIISSGCSSSTWRGAISNSYTKGYWPTYKAQQSSGSVRYCTTKLRAADANDEADYYVLDSVASWSNSARSNFHLAAPWSQKVSSSVAARRSEYSATPSFFRSTGTVNFSIGASFAGISLSSPQSFRLGTQVTRATNTTRGASWKGADASKVSSTELIYAQAVAENTVPKYTVTYSRPAYSYSWSRVKQCRATNCWTGWKPQLSGAAQSQITHTR
>NZ_CP051884.1|WP_169166238.1|2675912_2676437_+|hypothetical-protein
MTSGTALRKTIGTLLALHAIAISAAACTPGQATPTPTASNPWVTPLAENYLKAVTSNDPEGLRDLVAYVVGNPLPGSGNVVIGSHIPDSCLQAEIDGIIRAGVKPDSSIEIVSIGASDVEVEGSPANVSYAIETIQFGTRAGATIGRGVVEMADGALVQMEPNESCDSLIEAEQ
>NZ_CP051884.1|WP_169166239.1|2676553_2677384_+|hypothetical-protein
MTWTPGELEAIVNEIESSTSETDPVEDMSSAIEGLVSVCMNEAGFDYTPITTLPVNDLSSDLDFSLRDRASAATEGYGIASEGFGPGERSTTASSNPNDAYRESLSAAGLQEYEAALYGSVTETQSDEYEWRSAGCYGWAEHAVAGRAPSVDASGGLKEEIDIFWLSLADDPRLVEVNDAWRSCMERSGYVGLSNPNTAPAELWLEYEALGSEQSTTMLEIDEFREREIRQATDDFDCRESTHYSAEVMRIEHELQSEFVEMHRSELDAWLAATSG

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	94499-94525	3	0.889
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	253949-253975	3	0.889
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP035424	Leisingera sp. NJS204 plasmid unnamed7, complete sequence	10255-10281	3	0.889
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP038236	Leisingera sp. NJS201 plasmid unnamed2, complete sequence	25820-25846	3	0.889
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	896049-896075	4	0.852
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	896056-896082	4	0.852
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	303831-303857	5	0.815
NZ_CP051884_2	2.1|2584910|28|NZ_CP051884|CRISPRCasFinder	2584910-2584937	28	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	884315-884342	6	0.786
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	90523-90549	6	0.778
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	280996-281022	6	0.778
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	232569-232595	6	0.778
NZ_CP051884_3	3.1|2666365|27|NZ_CP051884|CRISPRCasFinder	2666365-2666391	27	NZ_CP026519	Deinococcus sp. NW-56 plasmid unnamed3, complete sequence	26767-26793	6	0.778
NZ_CP051884_1	1.1|948950|31|NZ_CP051884|CRISPRCasFinder	948950-948980	31	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	478489-478519	7	0.774
NZ_CP051884_2	2.1|2584910|28|NZ_CP051884|CRISPRCasFinder	2584910-2584937	28	NZ_CP006570	Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence	424939-424966	7	0.75
NZ_CP051884_2	2.1|2584910|28|NZ_CP051884|CRISPRCasFinder	2584910-2584937	28	CP016642	Mycobacterium sp. djl-10 plasmid djl-10_2, complete sequence	14827-14854	8	0.714
NZ_CP051884_1	1.1|948950|31|NZ_CP051884|CRISPRCasFinder	948950-948980	31	NZ_CP015203	Rhodococcus sp. 008 plasmid pR8L1, complete sequence	103447-103477	9	0.71
NZ_CP051884_1	1.1|948950|31|NZ_CP051884|CRISPRCasFinder	948950-948980	31	NZ_CP046100	Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence	192989-193019	9	0.71
NZ_CP051884_1	1.1|948950|31|NZ_CP051884|CRISPRCasFinder	948950-948980	31	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	107140-107170	9	0.71

1. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 3, identity: 0.889

cggctgctgtcccggctgggccgccgg	CRISPR spacer
tggctgctgtcccggctgggcggcggg	Protospacer
.******************** ** **

2. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 3, identity: 0.889

cggctgctgtcccggctgggccgccgg	CRISPR spacer
ccgctgctgtcccggctgggcagcctg	Protospacer
* ******************* *** *

3. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP035424 (Leisingera sp. NJS204 plasmid unnamed7, complete sequence) position: , mismatch: 3, identity: 0.889

cggctgctgtcccggctgggccgccgg-	CRISPR spacer
cggctgctgtcccggct-ggccgccaaa	Protospacer
***************** *******.. 

4. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP038236 (Leisingera sp. NJS201 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.889

cggctgctgtcccggctgggccgccgg-	CRISPR spacer
cggctgctgtcccggct-ggccgccaaa	Protospacer
***************** *******.. 

5. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

cggctgctgtcccggctgggccgccgg	CRISPR spacer
tggctgctgtcccgcctgggcggccag	Protospacer
.************* ****** ***.*

6. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

cggctgctgtcccggctgggccgccgg	CRISPR spacer
tggctgctgtcccgcctgggcggccag	Protospacer
.************* ****** ***.*

7. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 5, identity: 0.815

cggctgctgtcccggctgggccgccgg	CRISPR spacer
cggctgctgtcccggctcggtcgcgct	Protospacer
***************** **.***   

8. spacer 2.1|2584910|28|NZ_CP051884|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.786

cgacgtcggcagtccgcccgccggtggg	CRISPR spacer
cgtcgtcggcagcccgcccgccgccatg	Protospacer
** *********.********** .. *

9. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

cggctgctgtcccggctgggccgccgg	CRISPR spacer
tcgctgctggcccggctgggccgcgac	Protospacer
. ******* ************** . 

10. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 6, identity: 0.778

cggctgctgtcccggctgggccgccgg	CRISPR spacer
tcgctgctggcccggctgggccgcgac	Protospacer
. ******* ************** . 

11. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

cggctgctgtcccggctgggccgccgg	CRISPR spacer
tcgctgctggcccggctgggccgcgac	Protospacer
. ******* ************** . 

12. spacer 3.1|2666365|27|NZ_CP051884|CRISPRCasFinder matches to NZ_CP026519 (Deinococcus sp. NW-56 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.778

cggctgctgtcccggctgggccgccgg	CRISPR spacer
gtgctgctgttccggctggggcgcccc	Protospacer
  ********.********* ****  

13. spacer 1.1|948950|31|NZ_CP051884|CRISPRCasFinder matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 7, identity: 0.774

ggccactccgtccccgcagaccccggttcct	CRISPR spacer
gcggactccaaccccgcagaccccggttcga	Protospacer
*   *****. ******************  

14. spacer 2.1|2584910|28|NZ_CP051884|CRISPRCasFinder matches to NZ_CP006570 (Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence) position: , mismatch: 7, identity: 0.75

cgacgtcggcagtccgcccgccggtggg	CRISPR spacer
ttttatcggcaatccgccagccggtggg	Protospacer
.  ..******.****** *********

15. spacer 2.1|2584910|28|NZ_CP051884|CRISPRCasFinder matches to CP016642 (Mycobacterium sp. djl-10 plasmid djl-10_2, complete sequence) position: , mismatch: 8, identity: 0.714

cgacgtcggcagtccgcccgccggtggg	CRISPR spacer
gaacgtcgacagtccgcccgccgtgttc	Protospacer
 .******.**************     

16. spacer 1.1|948950|31|NZ_CP051884|CRISPRCasFinder matches to NZ_CP015203 (Rhodococcus sp. 008 plasmid pR8L1, complete sequence) position: , mismatch: 9, identity: 0.71

ggccactccgtccccgcagaccccggttcct	CRISPR spacer
ttccactccgtccccgcagaactcgctcggc	Protospacer
  ****************** *.** *.  .

17. spacer 1.1|948950|31|NZ_CP051884|CRISPRCasFinder matches to NZ_CP046100 (Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ggccactccgtccccgcagaccccggttcct	CRISPR spacer
ttccactccgtccccgcagaactcgctcggc	Protospacer
  ****************** *.** *.  .

18. spacer 1.1|948950|31|NZ_CP051884|CRISPRCasFinder matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 9, identity: 0.71

ggccactccgtccccgcagaccccggttcct	CRISPR spacer
ttccactccgtccccgcagaactcgctcggc	Protospacer
  ****************** *.** *.  .