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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051706 Escherichia coli strain SCU-124 chromosome, complete genome 5 crisprs csa3,cas3,DEDDh,c2c9_V-U4,DinG 0 4 7 0
NZ_CP051710 Escherichia coli strain SCU-124 plasmid pSCU-124-4, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP051708 Escherichia coli strain SCU-124 plasmid pSCU-124-2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP051707 Escherichia coli strain SCU-124 plasmid pSCU-124-1, complete sequence 0 crisprs NA 0 0 9 0
NZ_CP051709 Escherichia coli strain SCU-124 plasmid pSCU-124-3, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP051706
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051706_1 2277504-2277627 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051706_2 2879770-2879861 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051706_3 3001501-3001583 Orphan I-F
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051706_4 3885257-3885389 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051706_5 4584673-4584806 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051706_2 2.1|2879796|40|NZ_CP051706|CRISPRCasFinder 2879796-2879835 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP051706_4 4.1|3885274|42|NZ_CP051706|PILER-CR 3885274-3885315 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 1 0.976
NZ_CP051706_4 4.2|3885333|40|NZ_CP051706|PILER-CR 3885333-3885372 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 1 0.975
NZ_CP051706_1 1.1|2277547|38|NZ_CP051706|CRISPRCasFinder 2277547-2277584 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP051706_4 4.2|3885333|40|NZ_CP051706|PILER-CR 3885333-3885372 40 NZ_CP034685 Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence 143235-143274 11 0.725

1. spacer 2.1|2879796|40|NZ_CP051706|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 4.1|3885274|42|NZ_CP051706|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

3. spacer 4.2|3885333|40|NZ_CP051706|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagaaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********************************.*******

4. spacer 1.1|2277547|38|NZ_CP051706|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 4.2|3885333|40|NZ_CP051706|PILER-CR matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 11, identity: 0.725

catggcgtagaaaaaagaaattttcaatattgttttatgg-	CRISPR spacer
aacacaatagaaaaaagaaattttcaaccttg-tttatact	Protospacer
 *..  .********************. *** *****.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1084920 : 1093670 7 Escherichia_phage(71.43%) NA NA
DBSCAN-SWA_2 1436292 : 1485940 67 Enterobacteria_phage(49.23%) lysis,integrase,portal,terminase,tail,head attL 1445207:1445228|attR 1484851:1484872
DBSCAN-SWA_3 1723953 : 1733398 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_4 1823597 : 1829904 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_5 1989491 : 2043462 68 Enterobacteria_phage(78.57%) plate,integrase,portal,transposase,holin,terminase,capsid,tail,head attL 2010331:2010345|attR 2044373:2044387
DBSCAN-SWA_6 2711868 : 2759015 63 Enterobacteria_phage(52.83%) lysis,portal,terminase,tRNA,capsid,tail,head NA
DBSCAN-SWA_7 3529466 : 3639872 105 Shigella_phage(50.0%) lysis,plate,protease,integrase,portal,transposase,holin,terminase,capsid,tail,head attL 3582452:3582500|attR 3624475:3624523
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP051707
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1961 1 Macacine_betaherpesvirus(100.0%) integrase attL 1106:1119|attR 2201:2214
DBSCAN-SWA_2 9676 : 13306 4 Escherichia_phage(50.0%) transposase NA
DBSCAN-SWA_3 27554 : 33985 6 Enterobacteria_phage(33.33%) transposase NA
DBSCAN-SWA_4 42430 : 43135 1 Escherichia_phage(100.0%) transposase NA
DBSCAN-SWA_5 46731 : 50038 5 Moraxella_phage(33.33%) NA NA
DBSCAN-SWA_6 75614 : 75836 1 Vibrio_virus(100.0%) NA NA
DBSCAN-SWA_7 83876 : 91898 12 Yersinia_phage(25.0%) NA NA
DBSCAN-SWA_8 97533 : 100814 5 Enterobacteria_phage(66.67%) transposase NA
DBSCAN-SWA_9 103948 : 109363 7 Escherichia_phage(40.0%) integrase attL 102730:102742|attR 109549:109561
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage