CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP050417	Acinetobacter baumannii strain PM193665 plasmid pPM193665_2, complete sequence	0 crisprs	NA	1
NZ_CP050420	Acinetobacter baumannii strain PM193665 plasmid pPM193665_5, complete sequence	0 crisprs	NA	0
NZ_CP050415	Acinetobacter baumannii strain PM193665 chromosome, complete genome	3 crisprs	DEDDh,WYL,PD-DExK,csa3,cas3	8
NZ_CP050418	Acinetobacter baumannii strain PM193665 plasmid pPM193665_3, complete sequence	0 crisprs	NA	0
NZ_CP050419	Acinetobacter baumannii strain PM193665 plasmid pPM193665_4, complete sequence	0 crisprs	NA	0
NZ_CP050416	Acinetobacter baumannii strain PM193665 plasmid pPM193665_1, complete sequence	0 crisprs	NA	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1752 : 52315

Acinetobacter_phage(88.71%)

tail,terminase,capsid,integrase

attL 8505:8520|attR 21816:21831

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001040173.1\|1752_2019_-	Arc family DNA-binding protein	A0A0P0IVR2	Acinetobacter_phage	6.8e-39	100.0
WP_079739372.1\|2078_2303_+	Arc family DNA-binding protein	A0A0P0I460	Acinetobacter_phage	3.7e-30	95.9
WP_049589937.1\|2299_3286_+	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	9.3e-25	47.9
WP_014466185.1\|3380_3557_+	hypothetical protein	A0A0R6PI25	Moraxella_phage	4.8e-09	59.6
WP_032032007.1\|3565_3976_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_053502800.1\|3985_4363_+	hypothetical protein	A0A0D4DBP2	Acinetobacter_phage	1.5e-63	96.0
WP_169059671.1\|4464_9360_+	tape measure protein	J7I4Q7	Acinetobacter_phage	0.0e+00	97.4
8505:8520	attL	NA	NA	NA	NA
WP_002121607.1\|9864_10026_+	hypothetical protein	NA	NA	NA	NA
WP_031981301.1\|10090_10489_+	hypothetical protein	J7I0X8	Acinetobacter_phage	2.0e-71	97.0
WP_000368364.1\|10488_10995_+	DUF1833 family protein	A0A0P0IKN4	Acinetobacter_phage	1.0e-91	97.6
WP_000835166.1\|10991_11354_+	hypothetical protein	A0A0P0J0A2	Acinetobacter_phage	3.4e-65	100.0
WP_169059672.1\|11346_14793_+	hypothetical protein	A0A0P0HSH9	Acinetobacter_phage	0.0e+00	96.9
WP_000433899.1\|14861_15251_+	hypothetical protein	A0A0P0IYC0	Acinetobacter_phage	1.6e-65	98.4
WP_046693204.1\|15292_15871_+	glycoside hydrolase	A0A2H4JDB4	uncultured_Caudovirales_phage	5.0e-79	78.3
WP_041172232.1\|15965_16157_+	hypothetical protein	A0A1B1P9F8	Acinetobacter_phage	1.3e-28	96.8
WP_025465349.1\|16419_17406_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	2.0e-184	98.8
WP_000991751.1\|17425_18214_-	phage antirepressor	B6SD57	Bacteriophage	3.7e-56	48.1
WP_000123992.1\|18501_18774_-	hypothetical protein	A0A1B1P9G0	Acinetobacter_phage	1.2e-46	98.9
WP_133387844.1\|18966_19191_-	hypothetical protein	A0A0D4DCJ9	Acinetobacter_phage	1.3e-30	95.7
WP_053502680.1\|19187_19397_-	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	2.4e-31	92.8
WP_000854113.1\|19393_19618_-	hypothetical protein	I2GUB4	Acinetobacter_phage	1.1e-37	94.6
WP_053502682.1\|19604_19931_-	hypothetical protein	I2GUB3	Acinetobacter_phage	4.2e-22	61.7
WP_032049393.1\|19959_20328_-	hypothetical protein	A0A1B1P9I4	Acinetobacter_phage	5.3e-66	99.2
WP_001056665.1\|20337_21234_-	hypothetical protein	NA	NA	NA	NA
WP_049582464.1\|21236_22088_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A1P8DTH1	Proteus_phage	2.8e-25	29.0
21816:21831	attR	NA	NA	NA	NA
WP_001195991.1\|22104_22287_-	hypothetical protein	NA	NA	NA	NA
WP_001056781.1\|22286_22667_-	hypothetical protein	NA	NA	NA	NA
WP_001076118.1\|22666_22858_-	hypothetical protein	A0A1B1P9G9	Acinetobacter_phage	4.1e-14	65.2
WP_000065151.1\|23057_25325_-	N-6 DNA methylase	J7I0U9	Acinetobacter_phage	0.0e+00	100.0
WP_002042732.1\|25457_25673_-	hypothetical protein	A0A0P0I8I5	Acinetobacter_phage	5.5e-31	98.6
WP_043053747.1\|25688_26435_-	helix-turn-helix domain-containing protein	A0A1B1P9J5	Acinetobacter_phage	3.0e-108	80.1
WP_001100148.1\|26540_26729_+	hypothetical protein	NA	NA	NA	NA
WP_000166816.1\|26737_27013_+	hypothetical protein	NA	NA	NA	NA
WP_000047869.1\|27099_27267_+	hypothetical protein	A0A190XCD9	Acinetobacter_phage	5.1e-08	50.0
WP_000061204.1\|27263_28157_+	GntR family transcriptional regulator	A0A068C8G6	Acinetobacter_phage	3.5e-47	46.8
WP_032008034.1\|28156_29482_+	AAA family ATPase	A0A0P0IVX0	Acinetobacter_phage	6.3e-234	92.3
WP_079739360.1\|29478_30276_+	DNA cytosine methyltransferase	A0A2I7QZY6	Vibrio_phage	6.7e-66	54.1
WP_000644295.1\|30272_30524_+	hypothetical protein	A0A0P0IE39	Acinetobacter_phage	5.8e-40	98.8
WP_166470195.1\|30520_30697_+	hypothetical protein	A0A1B1P9H7	Acinetobacter_phage	2.1e-20	87.9
WP_053502685.1\|30693_31065_+	hypothetical protein	A0A0A0RTI7	Acinetobacter_phage	2.3e-29	59.2
WP_038349691.1\|31057_31255_+	hypothetical protein	I2GUD0	Acinetobacter_phage	3.0e-28	96.9
WP_049582452.1\|31251_31533_+	hypothetical protein	NA	NA	NA	NA
WP_000356509.1\|31534_31912_+	hypothetical protein	A0A0D4DCN2	Acinetobacter_phage	4.0e-08	35.0
WP_049582449.1\|31908_32163_+	hypothetical protein	NA	NA	NA	NA
WP_049582446.1\|32159_32615_+	hypothetical protein	A0A0P0HSP6	Acinetobacter_phage	8.3e-77	97.3
WP_049582445.1\|32611_32881_+	hypothetical protein	A0A0D4DC03	Acinetobacter_phage	4.6e-43	97.8
WP_000990564.1\|32891_33371_+	hypothetical protein	A0A0P0IY98	Acinetobacter_phage	2.0e-28	40.5
WP_025465323.1\|33850_34096_+	hypothetical protein	NA	NA	NA	NA
WP_000587871.1\|34098_34407_+	hypothetical protein	NA	NA	NA	NA
WP_079454608.1\|34409_34613_+	hypothetical protein	A0A1B1P9J1	Acinetobacter_phage	3.1e-28	97.0
WP_049582441.1\|34563_34839_+	hypothetical protein	A0A1B1P9J2	Acinetobacter_phage	5.6e-28	67.0
WP_043053751.1\|34838_35024_+	hypothetical protein	NA	NA	NA	NA
WP_000020582.1\|35120_36191_+	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	7.7e-33	32.6
WP_049582437.1\|36248_36740_+	hypothetical protein	A0A0D4DC11	Acinetobacter_phage	7.3e-63	72.6
WP_049582435.1\|36761_37418_+	hypothetical protein	NA	NA	NA	NA
WP_049582429.1\|37459_37894_+	hypothetical protein	J7HXN1	Acinetobacter_phage	8.1e-74	93.1
WP_049592421.1\|37862_38504_+	hypothetical protein	J7I4N9	Acinetobacter_phage	1.4e-125	99.1
WP_002067420.1\|38562_39033_+	DUF2280 domain-containing protein	A0A0D4DC15	Acinetobacter_phage	1.7e-72	87.8
WP_049592422.1\|39022_40450_+\|terminase	phage terminase large subunit	A0A0D4DCE6	Acinetobacter_phage	1.6e-259	94.3
WP_053502687.1\|40446_41892_+	DUF4055 domain-containing protein	A0A0D4DCP1	Acinetobacter_phage	1.1e-279	97.9
WP_000179751.1\|41898_43002_+\|capsid	minor capsid protein	A0A0D4DBL9	Acinetobacter_phage	7.8e-206	99.7
WP_000965231.1\|43010_43439_+	hypothetical protein	J7I4P3	Acinetobacter_phage	5.2e-73	100.0
WP_000004365.1\|43537_43774_+	hypothetical protein	A0A0D4DC19	Acinetobacter_phage	4.8e-36	94.9
WP_001139861.1\|43997_44189_+	hypothetical protein	A0A0P0IKM2	Acinetobacter_phage	1.7e-28	100.0
WP_000770049.1\|44302_45070_+	hypothetical protein	J7I0W4	Acinetobacter_phage	4.6e-120	100.0
WP_000214189.1\|45097_46054_+	hypothetical protein	A0A0D4DBM4	Acinetobacter_phage	2.1e-178	100.0
WP_004743766.1\|46119_46785_+	hypothetical protein	J7I4P7	Acinetobacter_phage	1.5e-114	100.0
WP_031958850.1\|46789_47179_+	hypothetical protein	A0A0D4DC24	Acinetobacter_phage	1.8e-64	96.1
WP_031958852.1\|47180_47549_+	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.5e-63	96.7
WP_031958853.1\|47586_48282_+	hypothetical protein	NA	NA	NA	NA
WP_032016325.1\|48383_48752_+	hypothetical protein	A0A0D4DBN1	Acinetobacter_phage	1.5e-60	93.4
WP_009517131.1\|48753_49152_+	hypothetical protein	A0A0P0IRA6	Acinetobacter_phage	5.0e-70	97.0
WP_031958856.1\|49220_49574_+	hypothetical protein	A0A0P0IY61	Acinetobacter_phage	6.6e-58	94.0
WP_150408857.1\|49573_50716_+\|tail	phage tail protein	J7I0X3	Acinetobacter_phage	1.1e-146	84.4
WP_038346476.1\|50812_51730_+	hypothetical protein	A0A0P0IL42	Acinetobacter_phage	5.0e-166	97.7
WP_150408856.1\|51799_52315_+	hypothetical protein	A0A0D4DBX8	Acinetobacter_phage	1.4e-72	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP050415

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050415_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050415_1

757327-757490

Orphan

Consensus_repeat	Method
CGGTTATCATTTTGCTGTTGTTG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP050415_1

>merge|NZ_CP050415|1|757327-757490|CRISPRCasFinder
TGGTTGTTATTTGAGTTTTGTTGGCCAGAATCTTTTTGATTAGATCCTTGTTGTTGGCCGCGGTTATCATTTTGCTGTTGTTGCTGGTTATTTTGTTGCTGTTGATCGTTTTGCTGTTGGTTACCGTGTTGCTGTTGATTACGGTTGTCATTTTGCTGTTGTTG

>NZ_CP050415|1|1|757327-757490|CRISPRCasFinder
TGGTTGTTATTTGAGTTTTGTTG	GCCAGAATCTTTTTGATTAGATCCTTGTTGTTGGCCG
CGGTTATCATTTTGCTGTTGTTG	CTGGTTATTTTGTTGC
TGTTGATCGTTTTGCTGTTGGTT	ACCGTGTTGCTGTTGATTA
CGGTTGTCATTTTGCTGTTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050415.1\|WP_000132045.1\|756893_757211_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_001145679.1\|758616_760026_+\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP050415.1\|WP_001029900.1\|749899_750571_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP050415.1\|WP_000376213.1\|767465_767921_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP050415.1\|WP_002008715.1\|756146_756500_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_000432325.1\|762279_763158_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187613
NZ_CP050415.1\|WP_000983633.1\|763299_763713_-\|V-type-ATPase-subunit	unknown	unknown	unknown
NZ_CP050415.1\|WP_001183735.1\|748148_749843_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP050415.1\|WP_000498477.1\|756587_756809_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_000482091.1\|757822_758302_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|224463
NZ_CP050415.1\|WP_085941324.1\|760080_762225_+\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NZ_CP050415.1\|WP_000119785.1\|753493_754399_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP050415.1\|WP_000251635.1\|755659_755803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_086225857.1\|750814_752098_+\|DcaP-like-protein	unknown	unknown	gnl\|CDD\|371763
NZ_CP050415.1\|WP_000795915.1\|765496_765733_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_002048382.1\|766697_767309_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP050415.1\|WP_001984002.1\|754400_754691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_001124837.1\|766015_766627_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP050415.1\|WP_161794718.1\|764263_765436_+\|stress-induced-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP050415.1\|WP_020753041.1\|752143_753382_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238868

Protein	Function_ID	Function_description	E-value
NZ_CP050415.1\|WP_001145679.1\|758616_760026_+\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	4.01855e-18
NZ_CP050415.1\|WP_001029900.1\|749899_750571_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.23318e-19
NZ_CP050415.1\|WP_000376213.1\|767465_767921_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	7.21166e-40
NZ_CP050415.1\|WP_000432325.1\|762279_763158_-\|glucose-1-dehydrogenase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.33703e-161
NZ_CP050415.1\|WP_001183735.1\|748148_749843_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP050415.1\|WP_000482091.1\|757822_758302_-\|CinA-family-protein	gnl\|CDD\|224463	COG1546, CinA, Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only].	5.88094e-21
NZ_CP050415.1\|WP_085941324.1\|760080_762225_+\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP050415.1\|WP_000119785.1\|753493_754399_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.17371e-72
NZ_CP050415.1\|WP_086225857.1\|750814_752098_+\|DcaP-like-protein	gnl\|CDD\|371763	pfam11854, MtrB_PioB, Putative outer membrane beta-barrel porin, MtrB/PioB. MtrB-PioB is a family of bacterial putative outer membrane porins. This family, is secreted as part of the pio (phototrophic iron oxidation) operon that has been found to couple the oxidation of ferrous iron [Fe(II)] to reductive CO2 fixation using light energy. PioABC is found in Rhodopseudomonas palustris and MtrB-PioB is likely to be a beta-barrel porin. Similar to other outer membrane porins, PioB and MtrB are predicted to have long loops protruding into the extracellular space and short turns on the periplasmic side.	0.000160446
NZ_CP050415.1\|WP_002048382.1\|766697_767309_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.37986e-22
NZ_CP050415.1\|WP_001124837.1\|766015_766627_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	6.13605e-39
NZ_CP050415.1\|WP_161794718.1\|764263_765436_+\|stress-induced-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	1.81391e-17
NZ_CP050415.1\|WP_020753041.1\|752143_753382_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238868	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.94174e-93

>NZ_CP050415.1|WP_000132045.1|756893_757211_-|hypothetical-protein
MTDQNTDHAQLVAGDHNYSDSRWRESYLTRPYYQEAQLTTPDLDYDRDFSAAYELGHRARSESKEGTQFEDMEGSLQQKWEELKAESRLKWEHAKQAIKDAWDDM
>NZ_CP050415.1|WP_000498477.1|756587_756809_+|hypothetical-protein
MFVYFTDGTCINDSEIYGVKAKYEQNKYVVEVTIKPTHVLATTPSVQFKKEVFDDPNLANQYLSHNFNMPPFF
>NZ_CP050415.1|WP_002008715.1|756146_756500_+|hypothetical-protein
MEDLNNLMIELRQEIKGTKLKLLYNYIDFAEILIKPLQESKIKLDLSLIPKSKNTQEFVLWLAGFIERITTGGQEKLPPIRAKITLPAYAYEETYPSQKKPVNNGEEIIEYFKKNQS
>NZ_CP050415.1|WP_000251635.1|755659_755803_+|hypothetical-protein
MVRIFCAVSMVLAIAMGMSACQDRNSKNDGMHEASDPATSHDMNKNS
>NZ_CP050415.1|WP_001984002.1|754400_754691_-|hypothetical-protein
MFFLYRFVLVSLLTIGVLNLMGCRPMSKNEFNTRCVWAGHDLSACNCIYNSLEQHYSPQFVESLPKLSLQNIDAKMNFVETMNQTMQQCQLSASKH
>NZ_CP050415.1|WP_000119785.1|753493_754399_+|LysR-family-transcriptional-regulator
MSYFDINRSGELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQSVTANHIPKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRTGPLKSSNLVARSLGSTYKHYVCSPVYIEKYGCPEHPDELHEHQLLDVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEFHAVWIGHDKYVPNRVRTFLDFLVEHASIN
>NZ_CP050415.1|WP_020753041.1|752143_753382_-|SGNH/GDSL-hydrolase-family-protein
MKLYQATLFSLVLITSFAQADVEKSQWITTWSASPQKVWNKDFVFPTLIPEQVSNQTIRQMSKISLGGEAVRLVFTNQYGKQPLYIDQTTIGLANAATLKSKSTYPVYFSGQLKARILPGKQLISDPIQLPVPDHAQLVMNSFIQKSTTFKTFHWDAKQTSWLISGNQTTNLTTPTDAKTTTARLLLSAIEVKPKQKAHVVAVVGDSITDGATATLDANTRWTDFLAKRLSAHRVAVINSGISGNRLLTDGMGDSVLKRLNSEIFQYSGVKTLIVLVGINDISWPGTAFAPKQQIPSFEALTQGYRHVVSEAHKHNIQVIGATLLPFSGALPNTPLDNYYQPNKDQLRQRINHWMRTSHTFDGVLDLDKGLKDPKHPNRLNPIYDSGDHLHPNDRGNQHMAELVDLDQIIKN
>NZ_CP050415.1|WP_086225857.1|750814_752098_+|DcaP-like-protein
MKILNTTIQKSLLAVSVTLLMSSAFAGQVNPEIEQLRQEIKELRAMLQTNMEAQKSLAQKRVEQAAPVVTQAPQPIQQTLTKSGAEFNLYGYIRADASYQIKGASTMYNNISGVPLENTPEESAQKDQLHSTVYVTRFGLNFKTPTAVGDVGGKLEMDFFGAATRDQFRIRHAYLTFDKWLIGQTWSTFIAPEYYPETIDAGTFVGSALLRSPLVRYSDNLTANTSFAVSVEDPKYTAATDPDNKMRLPALVGRLNHKFANGSMLSGRSFVAEKRTNNDSEWAWGVGLGGKYQITPDTLLKADYYHVKGDGRFLLWSNSGYAIDDQNNMHSNEFDTVSLGITHQFTPQIRSTLGYGYMKAKDDNRFAELQRTSTTQNKQLWQGWVNALYNPYKPITLGIEYVYGERETFDNRNGIDNRFNMIASYDF
>NZ_CP050415.1|WP_001029900.1|749899_750571_+|class-I-SAM-dependent-methyltransferase
MAKDFNSPKVVEGYDAHIRKLIPGYEVIHQQVDAILQSVLRPDAHILIVGCGTGYELEYLLKRHPNWQFTAVDPSLTMLQKAQEQVEILGKSAQVTFVHGETSALPLESCFDAALSILVAHFIADDIKPAFFKDIYKRLKEKAPLLTYDLMTCVNPQQLQALHYLCLAQGLTEEQCQKMLERMAEDFFSLTTEGYIKLLEETGFESVQPYTQILTYQGFIAKK
>NZ_CP050415.1|WP_001183735.1|748148_749843_+|AMP-binding-protein
MQQERLSYASGPSTQPLLGMTIGEQFDQACQQYAEKEAIVSFHQNRRLTYKALQDEVNAFACSLLKLGLKKGDRLAIWSPNCVEWTITQFAAFKAGIILVNLNTAYKSHELEYVLNKVSCKGLIIASQFKTTDYQELLTKIAPELTTCIDKVLSSERLPHLKFVIKIDDQQHTGIYRFSDLLTTPTSEQLEQLKQLARQLQFDETINIQFTSGTTGNPKGTMLTHHNILNNGYFVGEGIRLTPQDKVCISVPLFHCFGMVMGNLACVTHGATMVYPSAVFNPLETLKAIHQERCTAAYGVPTMFIATLEHEQFNDFDLSSLRTGIMAGSPCPREIMQRVIDRMHMSEITICYGMTETSPVSVQSSVNDSIDKRVSTVGHVHPHVEIKIVDLEGQIVPQGTLGELCVRGYSVMAGYWGEEEKTREVIDAAGWMHTGDIAEMDQDGFIKIKGRIKDVVIRGGENLFPKEIEDFLYTHPDVSDVQVIGLPDAKYGEELCACIILHEHHQVDEDSIRQFCKEHISHNKVPRYVRFFNEFPMTASGKAQKFKLQEIMRAELNLTGNVFD
>NZ_CP050415.1|WP_000482091.1|757822_758302_-|CinA-family-protein
MFNKCCELLAKEKIKIAFFESASAGYLAYRFSLSPYSGDILIGSLVSYDLRVKENTLHISEELIEKYTAESMQVTVEMINKGKELLHADLYVACTGLLKKGGSETPEKPVGTFFYSIYYKNNFYNFRRVLRGPAFLKLRKLIYYVTQDIKLIILEDKRR
>NZ_CP050415.1|WP_001145679.1|758616_760026_+|iron-containing-redox-enzyme-family-protein
MPVVVKKRLLDLLQDNQQNYYELFVFFLDPDVSSFEKEKKARDFLAKEIDKLEMKEIDFPSDINLIKAWCENDNKKNCQEFQAYLNRRQSGQDREYFKNVAQAFEFLIKVSPTKKVDGAWLYSSVHYWNDPIFHELIITYLEELGLGEPKANHVCIYDDLLRSLGLDSFDLLLEDEYYHQAVVQLALGYAPSEFIPEIVGFNLGYEQLPLHLLISNYELAELGIDSKYFNLHITIDNIDNGHAYKAIKVIEDIYNKYRDKELFLTKLKRGFALNNHGVSSSNIIKNLNTEDFVHRIFKRKALVGQLIHNETRQFGCKTINQWLSNPDDIAGLITHLTEHKWIKFNTDPEQSVFWRMINEENGKMFGVFNPVERQIIHDWIAGSDHSSSFLAYSRELKNSQRIQDYLFSYISDGELDALQERVQQSSDLAIKICKLTPFLAPDSHHKSIGLWSTRKYVELLFPYLGTFKN
>NZ_CP050415.1|WP_085941324.1|760080_762225_+|catalase-HPII
MDMNDNTKSTNKTSEMAGADAANKANTTQKTEQLDTVRDDATNEALTTNQGVKIADNQNSLRAGIRGSTLLEDFILREKITHFDHERIPERIVHARGVGAHGYFQAYEGNERLTKAGFLTDPTIQTPIFVRFSTVQGPRGSADTVRDIRGFAIKFYTQEGNFDLVGNNAPVFFVQDGIKFPDFVHAVKPEPDTEIPTGATAHDTFWDFVSLVPESAHAVIWAMSDRAIPRNLRSIQGFGVHTFRLINAEGKSHFVKFHWTPKQGLSALVWDEAQKLAGKDPDFHRRDLYEAIEQGFYPEWELGVQIVEEEDEMNFDFDLLDPTKIIPEELVPVTPIGRFVLNRNVDNFFAETEQVAFCPGHVVPGIDFTDDPLLQARLFSYTDTQLSRLGGPNFHQIPINKPVCPFHNNQRDGIHQHTIHKGQAAYQPNSIDGNWPVETPPAASNGGFESYPEKISGHKLRQRSETFSDYFSQPRLYYKSLAPHEQKHVVDAYTFELSKVQRKHIRERQVQQILANIDLDLARQVGANLGIEVPDLTLNYKKTAVEKSAKLSFLAFPPEDIQGRKVAVLIHNMVKSDALEAIKNWAIKEGVILHLLAPSLAPVKDHKDNVIVADGMQMSEPSIAYDAVIIPDGDNLNTVMQDGVARHYLLEAYKHLKPIVFLGNKSDLLEPLGLVADEGTLIEDEFQHVAEKFKNLIKAHRVWSREQIAAHVPA
>NZ_CP050415.1|WP_000432325.1|762279_763158_-|glucose-1-dehydrogenase
MENTTNQYPSEVPAQVQPHQPGDQEKMHPEPEIIKASHKGSEKLKGKVAVISGGDSGIGRSVAVLFAREGADIAVLYLEEDQDAEITKQLIEKEGQQCLLLKGDISDPDLAKQNIDKVLQHFGKINILVNNAGVQYQQKEIESISNEQLEKTFKTNIFAMFYLTKEAIPYMEEGDSIINTTSITSYQGHDELIDYASTKGAITSFTRSLSNNLMKQKKGIRVNGVAPGPIWTPLIPSSFDAETVEKFGKDTPMGRMGQPSEVAPAYLFLASDDASYITGQVIHVNGGQIVNG
>NZ_CP050415.1|WP_000983633.1|763299_763713_-|V-type-ATPase-subunit
MMQPTHTHSTLQYIHISVPEILLSNIQIKNSWQDYNQEWSYRLDPPHASHPFQRDLYIIKSKNIETEDIKKLLDNIVVKNNKNKDDLKNIVEAETVIKVILDLSNYIPIENWLNDTGNRSIIESMIDKNKVKLLDII
>NZ_CP050415.1|WP_161794718.1|764263_765436_+|stress-induced-protein
MDPERVREIASKGGRAAHASGNAHEFTSEEAREAGRAAHASGNAHEFTSEEAREAGALSHKNDDRNGRGRSRYDDDEDDDRGRSSGRGRGRSRYDDDDEDDDRGRSGGRGRGRSRDDDDEDDDRGRSGGRGRGRSRYDDDDEDDDRGRSGGRGRGRSRRDDDDEDDERGRSGGRGRGRSRRDDDDEDDDRGRSGGRGRGRSRYDDDDEDDDRGRSGGRGRGRSRRDDDDEDDERGRSGGRGRGRSRYDDDDEDDDRGRSGGRGRGRSRRDDDDEDDDRGRSGGRGRGRSRYDDDDEDDERGRSGGRGRGRSRRDDDDEDDDRGRSGGRGRGRSRYDDDDEDDDRGRSSGRGRGRSRRDDDDDDDDRRGRSDGRGQNSRNQKRDAYGRFTS
>NZ_CP050415.1|WP_000795915.1|765496_765733_-|hypothetical-protein
MKNQRDAVLGYADEQHAYYIRLIENDAVLGESYGIFCENPESEAAESIMTTLFLKKSFWLNGSEFTDIVKGLHPLTHS
>NZ_CP050415.1|WP_001124837.1|766015_766627_+|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MPKKKEFEHGGARENAGRKAQFNEPTKVIRVPESQVNFIKNWLLNNVKTDNQTDFTSKLKIQQIHPNNDKIYHIPLATERVAAGFPSPAQDDIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALIDNDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVVTYNLKRMR
>NZ_CP050415.1|WP_002048382.1|766697_767309_-|LysE-family-translocator
MAFNIFIAFWSVSILFIITPGADWAYAISAGIKGKVVVPAVAGMLFGHFITILLVAAGVGLLVANNPTALMILTVAGSAYLLWMGINLLLTPPTPNQSGSEKAQSWLSWATKGVYVSGLNPKVFLLFLALLPQFIDTTASWSVTTQILAFGVVHMISCAIIYLMVGYGSEAILKTRPQAAQLVGRFSGGLMVVIATCLLIGQI
>NZ_CP050415.1|WP_000376213.1|767465_767921_+|Lrp/AsnC-family-transcriptional-regulator
MDRTDKKILAELQLNGRLSITELAEKVGLSISPCHRRVKALEESGAIKGYRAELDPNLVGFEFSAIVFITLKEGDKQAVEKFENAVIEIPQIIQAQRLFGEPDYLLHVVAKDLPAFQRLYDEKLSAIPSVQRLISTIVMKDVVPERLFPIG

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Crispr_ID: NZ_CP050415_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050415_2

1088980-1089081

Orphan

Consensus_repeat	Method
GAGGATAAACAAAGCAATGCTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050415_2

>merge|NZ_CP050415|2|1088980-1089081|CRISPRCasFinder
GAGGATAAACAAAGCAATGCTTTGTCCTGAGAAGCGACTAAAGCTTCGCAAGAAGACGAGAACTATGTTCGAGTGGAAGAGGATAAACAAAGCAATGGTTTG

>NZ_CP050415|2|2|1088980-1089081|CRISPRCasFinder
GAGGATAAACAAAGCAATGCTTTG	TCCTGAGAAGCGACTAAAGCTTCGCAAGAAGACGAGAACTATGTTCGAGTGGAA
GAGGATAAACAAAGCAATGGTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050415.1\|WP_001023744.1\|1091119_1092037_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP050415.1\|WP_000448778.1\|1096600_1098334_+\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181346
NZ_CP050415.1\|WP_163072242.1\|1086626_1087322_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP050415.1\|WP_001133053.1\|1078264_1079284_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP050415.1\|WP_001289733.1\|1079285_1080821_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|273567
NZ_CP050415.1\|WP_000925651.1\|1089181_1089973_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP050415.1\|WP_000637000.1\|1084182_1085094_-\|bestrophin	unknown	unknown	gnl\|CDD\|376448
NZ_CP050415.1\|WP_000331400.1\|1092203_1093058_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP050415.1\|WP_163050500.1\|1077288_1078251_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|238958
NZ_CP050415.1\|WP_004835232.1\|1093054_1093450_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP050415.1\|WP_000771644.1\|1093545_1094154_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234675
NZ_CP050415.1\|WP_000864074.1\|1098354_1098600_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NZ_CP050415.1\|WP_000822394.1\|1090082_1091087_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|168683
NZ_CP050415.1\|WP_000364551.1\|1075937_1076924_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|237261
NZ_CP050415.1\|WP_000238436.1\|1082261_1083047_+\|acetoin-reductase	unknown	unknown	gnl\|CDD\|187624
NZ_CP050415.1\|WP_001271394.1\|1080831_1082235_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_CP050415.1\|WP_031958193.1\|1085163_1086435_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP050415.1\|WP_000642319.1\|1083076_1084135_+\|2,3-butanediol-dehydrogenase	unknown	unknown	gnl\|CDD\|176195
NZ_CP050415.1\|WP_000080821.1\|1095828_1096572_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP050415.1\|WP_001186401.1\|1094237_1095587_-\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350

Protein	Function_ID	Function_description	E-value
NZ_CP050415.1\|WP_001023744.1\|1091119_1092037_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.54094e-15
NZ_CP050415.1\|WP_000448778.1\|1096600_1098334_+\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181346	PRK08275, PRK08275, putative oxidoreductase; Provisional.	0
NZ_CP050415.1\|WP_163072242.1\|1086626_1087322_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.11289e-88
NZ_CP050415.1\|WP_001133053.1\|1078264_1079284_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	3.26675e-168
NZ_CP050415.1\|WP_001289733.1\|1079285_1080821_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|273567	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score. [Energy metabolism, Pyruvate dehydrogenase].	3.67023e-121
NZ_CP050415.1\|WP_000925651.1\|1089181_1089973_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	9.27594e-23
NZ_CP050415.1\|WP_000637000.1\|1084182_1085094_-\|bestrophin	gnl\|CDD\|376448	pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel. Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localized to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members.	4.15884e-82
NZ_CP050415.1\|WP_000331400.1\|1092203_1093058_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	4.38745e-34
NZ_CP050415.1\|WP_163050500.1\|1077288_1078251_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|238958	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).	1.33049e-132
NZ_CP050415.1\|WP_004835232.1\|1093054_1093450_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	9.44811e-39
NZ_CP050415.1\|WP_000771644.1\|1093545_1094154_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	5.24919e-86
NZ_CP050415.1\|WP_000864074.1\|1098354_1098600_+\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	8.24428e-10
NZ_CP050415.1\|WP_000822394.1\|1090082_1091087_+\|hypothetical-protein	gnl\|CDD\|168683	PRK06813, PRK06813, homoserine dehydrogenase; Validated.	7.04313e-77
NZ_CP050415.1\|WP_000364551.1\|1075937_1076924_-\|lipoyl-synthase	gnl\|CDD\|237261	PRK12928, PRK12928, lipoyl synthase; Provisional.	0
NZ_CP050415.1\|WP_000238436.1\|1082261_1083047_+\|acetoin-reductase	gnl\|CDD\|187624	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs. 2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14898e-114
NZ_CP050415.1\|WP_001271394.1\|1080831_1082235_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP050415.1\|WP_031958193.1\|1085163_1086435_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.73922e-122
NZ_CP050415.1\|WP_000642319.1\|1083076_1084135_+\|2,3-butanediol-dehydrogenase	gnl\|CDD\|176195	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	0
NZ_CP050415.1\|WP_000080821.1\|1095828_1096572_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.17942e-74
NZ_CP050415.1\|WP_001186401.1\|1094237_1095587_-\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	2.57835e-60

>NZ_CP050415.1|WP_163072242.1|1086626_1087322_+|MBL-fold-metallo-hydrolase
MFFKQFFEKESSTYTYMLGCEETREAVLIDPVASDIEIYAKELEQHQFTLIYTLDTHVHADHITAADLLRERFHCKSVLHRNSDVSCGDILITDGCMLKVGNLSIEARYTPGHTNACTSYLVGNMIFTGDALLIDGCGRTDFQQGSAGTLYDSIHKQLFSLPDETIVYPGHDYKGRLSSTIGYERLNNSRLGQNRSREDFIELMNNLNLPYPKQIDKALPANQACGSISQL
>NZ_CP050415.1|WP_031958193.1|1085163_1086435_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MAKLNFELEQDFYILFEQLKALFPNAILFLVDTSTQAIHYKFNTDDISVESMAALTQDHHNQYLEINTPKMRRRFIYQEHDIYIAEHRIIGKLHILQPVSIENDIVDGVELTEQLQDLAKVFNSCSPEMTRMFSIIQRVAITEFPVLVRGESGSGKELVAKAIHDYSQRKNKIFVAINCAALNSNILESELFGHVKGAFTGAIRDHKGVFERAAGGTLFLDEIAEIPLELQAKLLRVLETGEFTPVGGEKPIQANVRIITATHKALREEAKAGRFRHDLLYRLRVIPIFIPPLRERKVDIPIIVDQILKESSTQLDTMPRHVNQKAMQVLLNYDWPGNVRELKNTLLYALTMANGKDEIEVEDLPNELLNADDYVKLPETNAELSPENVQAALEKYNHNLNMVANIFGISRTTLWRYRQKHKL
>NZ_CP050415.1|WP_000637000.1|1084182_1085094_-|bestrophin
MIVRDKSNVFKLLFAWKGTILPKVLPALSFVVLISACVVWLSYYHWIQIPTVPAIGFTIFGVILSICTGFRNNACYDRWWEGRKLWGALIANARHIVRDSHVLSNEQREHLIHQVLIFCNLLRDRLRQQTVEPTKFLEHAYLNNSSLNYLNEHINAPQFVLENIQKDLVKALKDGEISDIIYGTLTRHIVELGNIQAGCDRIAGTPLPYSYSVLLHRAVYCFCFILPFSLEAALGIWTPLIVGLIAYMFLGLDALSAQIEEPFGLQENDLPLDSIVRLIERESLSSLGQPLPPIIEAQNNNLL
>NZ_CP050415.1|WP_000642319.1|1083076_1084135_+|2,3-butanediol-dehydrogenase
MKAARFYDRGDIRIEDIPEPEVTPGTVGIKVAWCGICGTDLHEFMEGPIFIPPCGHPHPISGESAPITMGHEFSGVVYAVGEGVDDIEIGQHVVVEPYIVADDVPTGPGDNYHLSKNMNFIGLGGRGGGLSEKIAVKRRWVHPISNKIPLDQAALIEPLSVGHHAYVRSGAKAGDIALVGGAGPIGLLLSAILKAKGLKVIITELSAKRKEKAKESGVADYILDPSEVDVVSEVMKITNGDGVDVAFECSSVNKVLDTLVAAVKPTGVIVIVSIWSHPASINVHSVVMKELDVRGTIAYVNDHQETIKLVEEGKINLEPFITQRIQLDDLISQGFETLIHNNESAVKIIVHP
>NZ_CP050415.1|WP_000238436.1|1082261_1083047_+|acetoin-reductase
MVKGLKNKVALVTGAAQGIGRGIALRLAQEGAHIALVDMKQDRLNDVQQEIQALGVNASTFIADVSDREQVYAAINHAEQTLGGFDVMINNAGIAQVQAIADITPDEFQKIVDINIGGVLWGIQAAAAKFKQREHKGKIINACSIAGHDGFALLGIYSATKFAVRALTQAAAKEYASHGITVNGYCPGIVGTDMWVEIDKRFAEITGAAIGETYKKYVEGIALGRAQTPDDVAALVAFLASEDSDYITGQSILTDGGIVYR
>NZ_CP050415.1|WP_001271394.1|1080831_1082235_+|dihydrolipoyl-dehydrogenase
MSAAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIVEEQHLGGICLNWGCIPTKALLAGAELATQFKHAGQFGFQVSQLDFDVQKLVQHSRQVSAQLVQGIDYLLKKNQVTVFNGRAQLTAKEKIEVTDAQGNSQVLSAPHIILATGAKARHVPQLPVDGTYVWSYKEALVPEQLPKSLLVVGSGAIGSEFASLYQDLGCQVTLIDLAKQILPTEDAEVAQFVRKQFEQKGMKVITDAVVQSIQIENEQVHCVVETANDVQTLVFDRVLSAIGVQPNTTGLGLERLGVELNPQGFVAIDDYCKTNVAGLYAIGDVAGAPCLAHKASHEAMICIEKIAGVANVHSLDRSQIPGCIFTHPQVASIGLTENAAKAKNLPIRIGKFSLTANGKALAIGDASGFVKTVVHAETGELLGAHMVGHEVTEHIQGFAIAKYLEATDESLAQVIFPHPTLSEAMHESILASMQRAIHM
>NZ_CP050415.1|WP_001289733.1|1079285_1080821_+|2-oxo-acid-dehydrogenase-subunit-E2
MSEIKTLEIPKWGLSMEEGTIAQWLIKEGDSFNKGDEICEIETTKIVNVLEAPFAGTLRKILAKDGDTLPVGGLIAVCADSEVSDAEIEKFIASLGGSAAQAPEAPSEQSKAETSAPVAEKTAQPQTAAASASAPAKVAKDDYAVPESLQGYQTSNELFATPHALKLAEKHNVNLAKVTGSGREGRISVQDIQKAVQASGGQWPDVRQQTQAKVVKSTADDSQVLATPVARRLAKQWGINLNDCRVSGTRGRVCKEDVEAVYYRNNPVSVSEQPVQCAAQPQSTVTTVAMNGMRKAIASRLQAAKRNAPHFRLVVDLNVEALQKLRKQINETVPQVKLSINDMLIKAAAAALIKVPEVNVQFDEATQSILQFSQADISVAVAIPNGLITPIVKAANQKSLAQISDDMRDLATRAKTGKLQPDEFQGGSFSISNLGMLGIKQFDAIINPPQGAIMALGASESRAVVENGNVVVREIVTATLSCDHRVIDGAVGAKFLASFKQFVENPALILV
>NZ_CP050415.1|WP_001133053.1|1078264_1079284_+|alpha-ketoacid-dehydrogenase-subunit-beta
MPNKSFRNAIKEAIESEMRRDPTVFVVGEDVRGGHGGKNTEENQLEGFGGVLGVTKGLWTEFGSERVIDTPITESAIIGMAAGAAATGLRPVADLMFMDFYGVCHDMLYNQAAKFRYMFGGKAKAPMVVRGMIGAGFSAAAQHSQSPYNVFAAVPGLKVVVPSSPYDVKGLLIQAIRDDDPVVFCEHKMLYDIKGEVPDDAYTIPFGVANYTREGTDVTIIALGLMVHRANEVADKLAKDGISVEVVDPRTISPLDEEGILESVASTGRVVIVDESAARCGFGHDVAALIAQKGFHYLKAPVELVTPPHTPVPFSPVLEKEWIPSVERIEQAVRKTLEA
>NZ_CP050415.1|WP_163050500.1|1077288_1078251_+|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MQLTEEQLLAAYKRMRDIREFEDRLHEENTNGDIPGFIHLYSGEEAVAVGICENLTDKDYITSTHRGHGHCIAKGCDIHAMMLEIFGKDDGLCRGKGGSMHIADLDKGMLGANGIVGGGPPLAIGAALTAKTLKTGGVGLSFTGDGGSNQGLTFEAMNMAVVLKLPVIFVFENNGFGEGTGHDYAVGSKDIAGRAAGFGLPAVKVDGTDFFAVYEAAQTAIERARRGEGPSVIETITNRFYGHFEGDPGLIRSKEEVEFIKENKDPLKIFREKVKGKIDEAKLDEIDAATKANVDDAVAKARAAAYPKPEQLLTDVYVSY
>NZ_CP050415.1|WP_000364551.1|1075937_1076924_-|lipoyl-synthase
MDLKRQIETGIKLRGIDKVSRIPIKILPTEELPKKPEWIRAKITDFEEIQRIKNLLRQQKLHSVCEEAACPNLPECFAGGTATFMIMGDICTRRCPFCDVAHGRPMPLDENEPKHLAETVANLNLKYVVITSVDRDDLHDGGAAHFVKCIEEIRNRCPDTLIEILVPDFRGRLETALSTLSLSPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKRFKKYCPDIKTKCGLMVGLGEIEAEVIALLNDLKDHDVDLVTIGQYLQPSKSHAPIHRFVNLQEFERYTQHGQRLGFKNIWSAPMVRSSYFADRQYFGESAPKPFSREDVLS
>NZ_CP050415.1|WP_000925651.1|1089181_1089973_+|sulfite-exporter-TauE/SafE-family-protein
MLLLVVEGIVIGFLLGLTGAGGGILAVPALMTSQGWSVAQAAPIGLLAVALSTLIGTIEGLFKKIVRYRAAIWIALIGAPMAHIGILIANTISPIWLMLMFSLVMFTVGYRLINNRVSDFHNPPCQVNPSTGRFIWNFKTGGVLASIGIIAGLLTGMLGVGGGFVIVPALRKVTNLDMHSIVATSLMIIFLISGMSIVMHIAEGFQYPVAITSAFALACAFGMLLGRRAIRFIPSAIVQKVFALMVFAVAIYMVIKIVNLTNI
>NZ_CP050415.1|WP_000822394.1|1090082_1091087_+|hypothetical-protein
MKRINVAICGFGRIGQQIAELLLNRSTYYKQKYQIDARLVGVCNSSSGLIDQEGLQASKWLDKTQYQAGLTEQKFLKQVQADVIIETGPSDYVTGGKGLFYLNYALTHSMNAIAVSKGALVVEGKKLINLAHQHNKKLFFSGATAAALPTVDLFEYNLAGCQILEIESVFTGTTNFILNDMLQHECAFTESLEKAQARGIAEPNSSFDVDGWDTAAKITILANTVLGVDVKIQDIPRQGISHVTTEHIRDWKKENIIPRLVGFIHIKNQQIQTGVELRLVPANHPFAHLQGSNKCIRVLTQEMGEFVVSGGASAPLATAAAALKDFELMLKTGC
>NZ_CP050415.1|WP_001023744.1|1091119_1092037_-|EamA-family-transporter
MNILLYVAVVLIWGTTWIGIAVQSHYATPVVAILWRFAISALLLWVVLLFSGKLQRIALKDHLFCMLQGLCVFGLNFICFYTAVKYVNSGLESVIFSMAVFFNAINALIFFKQKPSPNFAPAALLGLSGIVLLFWHDLINSQFNAQLLMGIGLCAIGTYGFSLGNMISVRHQKRGLNIFSTNCYAMTYGALVMLILALFTGQDLMPPMNFPFLSSVLYLAVFGTVIGFSAYFSLVGRIGAAKAAYSTLLFPLVALTVSTFFEGYEWTLNAVFGILLILLGNYLMFSKFEIGKKLFSSQKNCEKQA
>NZ_CP050415.1|WP_000331400.1|1092203_1093058_+|AraC-family-transcriptional-regulator
MAYQTLEQLQQSKAKLHETVVLDENMQLAFWSNQQDRVSVCSDHHTLSLYIQDGYESYQKTPAGWKNGGGPGRFCLLPEHQESTWDIRGGLKFVHLYYTDQHLRDVAEKIWDKEPNQIELNEVVFNDDERIRALYQFFLLDCDWQDSSNHLQMSTTASLLLNHLIRKYSSVQWQQPTIKGGLAPHKLKYIQEWIEDHLDQALTLSDLANVVNLSEYHFAHMFKQSMNMAPHQYVMQRRLTKAKGLIQSSQLSLQDIALVCGFSSASHLSHRFKQFYGMSPSQLR
>NZ_CP050415.1|WP_004835232.1|1093054_1093450_-|helix-turn-helix-transcriptional-regulator
MTVTIPHDIQSSDCQRVSQVLARVGEKWSILIVMTLASHPHRFSEIKRRINGISQRMLTLCLRGLERDGLVKRTVYPVVPSHVEYELTPLGHSLTEPVIALGQWAQQHIADIDAARAAFDAAQEKPITLDT
>NZ_CP050415.1|WP_000771644.1|1093545_1094154_+|NAD(P)H-dependent-oxidoreductase
MKLLQIDTSILGEQSVSRQLTSSVIRQLSTAYPDAEIIHHDFALEPIPHLSDAEFLAWQGVEPNNEIAQQRVARNTQYLDEFLSSDIVVIGAPMYNFSFPSQLKAWLDRLSVAGKTFRYTENGPQGLVEGKRVIIASSRGGVYSEGSPAEALDYQETYIKAFFNFIGVTDITFVRAEGIAFGPEARQTALDNAAAQIAQLAG
>NZ_CP050415.1|WP_001186401.1|1094237_1095587_-|chromate-efflux-transporter
MQQKQLNTPDDSVEQVTFWQAILFWLKLGFISFGGPAGQIAVMHQELVEQKRWISEKRFLHALNYCMLLPGPEAQQLATYIGWLMHRTTGGLVAGILFVLPSLFILIGLSWVYIKFGDVPVISGIFYGIKPAVTAIVFHATYRIGSRSLKNKFLWFVAIAAFFAIFFLKLPFPLIVLSAGIAGYLASKKYPELFSSAAGHKASQKDYGPAIIDDDTPTPEHAKFHWLRLAKLIFVAIALWLLPILALGAYFGWHHSYTQMAWFFTKAALLTFGGAYAVLPYVYQGAVNHFGWLSPTQMIDGLALGETTPGPLIMVVAFVGFLGGVNHSLLGSEHLFFAGALGAVIVTWFTFLFSFVFIFAGAPIIESTHNEIKFTAPLTAITAAVVGVILNLALFFSYHVLWPQGFSGHFDIVAALITVAAFIALFRFNINVLYVIFASALVGLAVTFF
>NZ_CP050415.1|WP_000080821.1|1095828_1096572_+|GntR-family-transcriptional-regulator
MSQLPQDPKNHKPLYDQLRELILNKIVNGEYAVLSQIPSENEFAEQFGVSRITVRQALNQLQLEGYIFKVPGKGTFVSKPKTFQNISSLQGFAEAMSSAGHEILNRVISAELKQVPMHVVPKLKLPVKANVYEIQRVRLLNRQPVSYELTYLSEHIGLKLKEKAIDLRTTDIFKALEQECDIPLGHADLSIDATVADEELAALLQVEIGTPVLRVERLTHDANGQPIDYEYLYFSGDTFQYRLRIHR
>NZ_CP050415.1|WP_000448778.1|1096600_1098334_+|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
METKYFEFDIVVIGGGTAGPMAAIKAKQENPNLKVLLIEKANVKRSGAISMGMDGLNNAVIPGYATPEQYTKEITIANDGVVNQTTVYAYAKHSFTTIQQLDQWGIKFEKDETGEFAVKKVHHMGAYVLPMPEGHDVKKVLYRQLKRAQVKINNRIVTTKLLKNEQGAINGVLGFDCRSGDFYVIKTKAAILCCGAAGRLGLPASGYLMGTYENPTNAGDGYAMAYHAGAELANLECFQINPLIKDYNGPACAYVTGPLGGYTANSKGERFIECDYWSGQMMWEFYQELESGNGPVYLKVDHLAEETIQTIEEILHTNERPSRGRFHEGRGINYRQDMVEMHISEIGFCSGHSASGVWVNEKAETSVKGLYSAGDMAAVPHNYMLGAFTYGWFAGVNAAQYVNAVEDSELNQSEIEAEKARIFAPLDCSEGLPPEQVEYKLRRFVNDYLQPPKTRQKMEIGLKRFEEIKQDIKRISARNPHELMRAAEVSFIRDCAEMAARASLFREESRWGLYHYRADFPQKNNSDWFCHAHLKKDEHGNMVSFKKPIEPYVVPINQDEAVSYDRLRIQKDVALAD
>NZ_CP050415.1|WP_000864074.1|1098354_1098600_+|ferredoxin-family-protein
MAFIFKEVQHRTVAPVIIDEDKCIADKGCTVCVDVCPMDLLAIDPTTQKAYMQFDECWYCMPCEKDCPTDAVKVNIPYLLK

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Crispr_ID: NZ_CP050415_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050415_3

3416177-3416261

Orphan

Consensus_repeat	Method
TTTTAACTTTGGCGCAAGACAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050415_3

>merge|NZ_CP050415|3|3416177-3416261|CRISPRCasFinder
TTTTAACTTTGGCGCAAGACAAGCAGTGAAACTGCGCGTAGAGTAAAGAAGATTGATAATCTTTTAATTTTGGCGCAAGACAAGC

>NZ_CP050415|3|3|3416177-3416261|CRISPRCasFinder
TTTTAACTTTGGCGCAAGACAAGC	AGTGAAACTGCGCGTAGAGTAAAGAAGATTGATAATC
TTTTAATTTTGGCGCAAGACAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050415.1\|WP_034129408.1\|3424495_3425710_+\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP050415.1\|WP_015451615.1\|3412821_3413250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_001016573.1\|3413285_3414422_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP050415.1\|WP_001198164.1\|3417901_3418687_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP050415.1\|WP_001984826.1\|3414547_3414691_-\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NZ_CP050415.1\|WP_034129409.1\|3406043_3408122_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP050415.1\|WP_000125649.1\|3421517_3422093_-\|SdpI-family-protein	unknown	unknown	gnl\|CDD\|379303
NZ_CP050415.1\|WP_001017534.1\|3414789_3415698_-\|DUF1853-family-protein	unknown	unknown	gnl\|CDD\|378094
NZ_CP050415.1\|WP_000101096.1\|3405037_3405400_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP050415.1\|WP_005119701.1\|3408268_3412789_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223716
NZ_CP050415.1\|WP_001984830.1\|3422193_3424368_-\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
NZ_CP050415.1\|WP_001259501.1\|3415802_3416171_+\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP050415.1\|WP_000389061.1\|3404630_3405014_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP050415.1\|WP_034129410.1\|3405460_3405997_+\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP050415.1\|WP_001005337.1\|3427578_3429054_+\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP050415.1\|WP_000077301.1\|3416321_3416825_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NZ_CP050415.1\|WP_000473032.1\|3418813_3421360_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|99797
NZ_CP050415.1\|WP_000490937.1\|3427338_3427479_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_002010643.1\|3426952_3427156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050415.1\|WP_001047593.1\|3425737_3426442_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380313

Protein	Function_ID	Function_description	E-value
NZ_CP050415.1\|WP_034129408.1\|3424495_3425710_+\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.36746e-95
NZ_CP050415.1\|WP_001016573.1\|3413285_3414422_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP050415.1\|WP_001198164.1\|3417901_3418687_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.40229e-39
NZ_CP050415.1\|WP_001984826.1\|3414547_3414691_-\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	4.44613e-07
NZ_CP050415.1\|WP_034129409.1\|3406043_3408122_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	8.03475e-71
NZ_CP050415.1\|WP_000125649.1\|3421517_3422093_-\|SdpI-family-protein	gnl\|CDD\|379303	pfam13630, SdpI, SdpI/YfhL protein family. This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.	0.00838382
NZ_CP050415.1\|WP_001017534.1\|3414789_3415698_-\|DUF1853-family-protein	gnl\|CDD\|378094	pfam08907, DUF1853, Domain of unknown function (DUF1853). This family of proteins are functionally uncharacterized.	5.07662e-40
NZ_CP050415.1\|WP_000101096.1\|3405037_3405400_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.79368e-36
NZ_CP050415.1\|WP_005119701.1\|3408268_3412789_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.23501e-116
NZ_CP050415.1\|WP_001984830.1\|3422193_3424368_-\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
NZ_CP050415.1\|WP_001259501.1\|3415802_3416171_+\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	4.46882e-39
NZ_CP050415.1\|WP_000389061.1\|3404630_3405014_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.27194e-36
NZ_CP050415.1\|WP_034129410.1\|3405460_3405997_+\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.6552e-30
NZ_CP050415.1\|WP_001005337.1\|3427578_3429054_+\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NZ_CP050415.1\|WP_000077301.1\|3416321_3416825_+\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.56335e-26
NZ_CP050415.1\|WP_000473032.1\|3418813_3421360_-\|PepSY-domain-containing-protein	gnl\|CDD\|99797	cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	4.52302e-132
NZ_CP050415.1\|WP_001047593.1\|3425737_3426442_-\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	1.03168e-34

>NZ_CP050415.1|WP_001259501.1|3415802_3416171_+|YbaN-family-protein
MRTLFWRTLVVIFITLGIIGAILPGMPTTVFLILAAWAASKGWPQMDAWLLNHPKYGPTLRDWRANGTVPRKAKWIATIMMTASGILMLFTSAPFWVKVFTDTTMLVVAIWLWLRPEPKLKD
>NZ_CP050415.1|WP_001017534.1|3414789_3415698_-|DUF1853-family-protein
MNIASIKTSYFEPWLQFSHPMVRQLAFTIASPNLLSQLPCSLTIRHSFQLHTDKNWEQHFQNYLPRLKQLDEAPEPLLQFMSRLKSTRLGLRFENLLWFWLQEDQYHPYQLLGHSIQKIDGAKTLGELDFLVLNQNTQEIEHWEVALKYYLGEGQLNLEQWSGLNRQDTLSKKLYHFTDKQFQFSEALGFKVQQRFAVLKGQLYLPLNLPQEQPIPEWVNLKRRLGTWGTEIPKSDFYRLERHEWLCPHQKASSNTAYWWTDGLYCQNINETRFYMFRHPALLSLKPSLIKNNGVLQETTSL
>NZ_CP050415.1|WP_001984826.1|3414547_3414691_-|entericidin-A/B-family-lipoprotein
MMKKVLVASVMVAFVLTGCNTFKGFGQDVSKAGDAVTNTAQKTENKM
>NZ_CP050415.1|WP_001016573.1|3413285_3414422_-|succinyl-diaminopimelate-desuccinylase
MNHSDTLSLSLELLQQPSVTPIDHTCQTIMADRLAKVGFHIEPMRFGDVDNLWARRGTEGPVFCFAGHTDVVPTGRLDAWNSDPFAPEIRDGKLYGRGSADMKTALAAMVVASERFVAKHPNHKGSIAFLITSDEEGPAVNGTVKVIETLEKRNEKITWCLVGEPSSTHKLGDIVKNGRRGSLNAVLKVQGKQGHVAYPHLARNPIHEASPALAELCQTVWDNGNEYFPATSFQISNIHAGTGATNVIPGALEVTFNFRYSTEVTAEQLKQRVHEILDKHGLQYEIVWNLSGLPFLTPVGELVNAAQTAILNVTGTETELSTSGGTSDGRFIAPTGAQVLELGVLNATIHQINEHVDVHDLDPLTDIYEQILENLLAQ
>NZ_CP050415.1|WP_015451615.1|3412821_3413250_+|hypothetical-protein
MDQQELQHLITVSTGFIDAYIIECNDQVPMLLPQNIVLSAMDVKNGVKHIEWHDVKLPVYSVHNAIDQHAVALVIEGEDISQRFALICKTMPVSTRLRISEIVDEMDEHEAEQHPAVFKYVRMQHQRYYIPNLEYIEKTLGL
>NZ_CP050415.1|WP_005119701.1|3408268_3412789_+|hybrid-sensor-histidine-kinase/response-regulator
MKEILKTLTEAMTLPEDSYSEQDAEFLEIFIEEIEEIFVDLQPLINKWMQSENIATLTEIRRHFHTLKGSGRMIGAKSSAELAWAVEDTLNRVINQSLQLTPTIQSYVQLVFKFYFLKLVDNFKQKRAHTLDFRPLILLGQQLQQQQSLEPALEELLQLSNTLMAETVTGLELDYIEQDSLAEPIIQATHTEIEINLDETLTLFMEEAEEHLATIHQFLDQELHQYDSYNALIRALHTLRGSSAMAQVETIFEASTKVEHLFKILLQEELSSHSEEILLLQEYREFVRDSLELLSRYSSSEQLEARLQQFNQSWDAYVEQHGDRTDPLMPSHGLVSQLLQLDVSELLDAELDFEKGIRNEFPDYLERLSEQADLLLQHTHSQAMLGLHEYTSQLKESYEVLLDKPTLLQSDYIFEIYQKAHQQLIQLFDALAAGQRVGVVKQHQSILEELKLYTQYTPDLSNDLPQQDSTSFEPISNIEQEPEVVATVENFSDSVDWAVLGQSVQQDRQYISSTQVNRNFDADLLDIFLEEAEELLEGIDTDLNIWVGEQENFAALNNLMRYLHTLKGGANMVQATYLGLIAHELESIYERLIQKQLVATSDLIDFIRLVQDDLADRLQIMREQQLDYAAPYTINALKRAGQNSNFQPLPVVEAFDTESEIFSEQEVISEVIIDEIPVELEPALAELETHHDQVFDTAVTELATPVEMITTVTSQESEIAADEQDIEAVVEQTFLEEATELLEMAESLLKQWFEQRTNRSILLQLQRAVHSLKGGARMVGLEAVQAIAYQLENAFEQFALHHFNSNIYDHLLESAIAWLKDAIFNHNYQHFDGLQQSLENIQFFETTIQIPTKLTRADLFNSEPVMTFIQGDGTEPPPMMGAWEQTERLDQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFSHTLVEMELAIQRLADQLRRMEGELETQIIAKHGIEHSRYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSDKIRDTESLLLQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVRQTSTALNRPAELFVNNTEGELDRNILERLVTPLEHMLRNAIDHGLEDRMQRQQANKPETGRIELNIQRQGTDVVVVFSDDGQGIDVEKVRQKALLAGLIKPEQDLEQQDILQLIFHPGLSTAEQVTQISGRGVGLDVVQSDIKSLGGHVSVESIYGQGTTFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIIRVSPASLEQYFESPQELFEYENKRYPLRYLSEFVGNQPIPRLNGVMYSLPVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTQRHKQLSEAIYRQRESDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEVLNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVASDSEVKS
>NZ_CP050415.1|WP_034129409.1|3406043_3408122_+|methyl-accepting-chemotaxis-protein
MGFKLKKKSGNRGATGKSSVNFIAKIQSKIEQFASLFGESEKSKPILYAALLCLVCALISLAYLFYNVHRHNQLIRSLGELRLLSQTISKQATEATESGSQEAITKLQQSKKDFDENLLEIENIHGKSTDEYQKVEKIWGEVSKNIDLISSHQRVLNQLYDTNISISETVPEIQAEYNLMVDQMARQGLPSSQVIIAKNQVFIAERILRSINSVLSGTDGNVSTSDFSVDIETFGTYLNAELNGNAELGVDRIADPALRESLESIKSEYDKVLKSAAATVLKNGSQIVNVRQASSQIFSKSDVMLESLGHLSDVARKNWLTLFLGAVLILSLSGLIFSVFKLITLRSVMDKKRVARLQEEYDRNQNAILRLLDEIADLADGDLRSYATVSEDFTGAIADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIREQIQETSKRIKRLGESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVADEVQRLAERSASATKQIETLVKTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEIQKVSGDLAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVSELANMAESLRESVTDFKLPD
>NZ_CP050415.1|WP_034129410.1|3405460_3405997_+|purine-binding-chemotaxis-protein-CheW
MAANGFIELLRLSKRGNKNYASVQNEAQRWSGIAFEMRGQYFVAPLGEVSEVIYPPKYTPVPNTQSWVKGLANIRGRLLSVSDLAHFISGQWSSFSSTQKVLCISHHDQYVGLVVDQVLGIQHFNKKSFFSQSSDLEENLKEYCQGYFHQHNQHWHVFLFSRLLQNPHYMNASTKFIN
>NZ_CP050415.1|WP_000101096.1|3405037_3405400_+|response-regulator
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN
>NZ_CP050415.1|WP_000389061.1|3404630_3405014_+|response-regulator
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQNIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS
>NZ_CP050415.1|WP_000077301.1|3416321_3416825_+|L,D-transpeptidase
MSQFKLEDADILIDLANQTLSLPKHNKFYVVSTGKNGIGEQENTGKTPRGWHRVAKKFGMQSPKNAVFIARQPTGEVYSSELAAQFPERDWILSRILWLDGLEEGFNKGEGHDTMQRYIYIHGTPDKEPMGVPMSHGCIRMRNEEIIELFDLVSEDALVYLSEQSLT
>NZ_CP050415.1|WP_001198164.1|3417901_3418687_-|YdcF-family-protein
MQVSKWIRIFLAVIGSILFLDGLFLAFLNKIHVGTLVPLVLGAFFCLYALFYYHLERFFFYHYRLHTLWRFGWLCFWIWLIGLGYFFNFIKENKDASQNLPAVKAIIVLGSGVENGQPSAILAKRLDTAAPVALSQPQAKVILTGGLDFSEKEPEALVMSRYLEQHFHIAKDRMILEDKSTSTELNLKNSKPLLEQAHISINQPIAIVTSDFHTPRAAAIAKKQGYTQVYMVAAETPLITRYNVWLREYFAYASGWLLNEY
>NZ_CP050415.1|WP_000473032.1|3418813_3421360_-|PepSY-domain-containing-protein
MFKKFLFQIHWFLGISAGLILSIMGVTGAIYSYDQQILKWVNTDSYVVQAQSSPKLTPAQLYQHFTTIQPEIKINSITIAKDPTASSVVNIEKEGERRGYNMMVNPYTAQVLPEVQGRKLLLLIQQIHRNLTAGEFGKQITGACALMLIYFVLSGLYLRWPKKHSARQWLALKPKLKGRNFIWDLHAVVGTWVIVFYLLFACTGLYWSYDWWRSGMFKVLGVEQPKMQGHSGSGRNKDQLPKIQLDNAQLITALNQTWSGFNNQIGRDYSTLTVNLPKKDDGKIELSFVDATPQHERARNQAVYNYKTANIEKMELYEDKKLNQKIMSSMLPVHRGSFFGPVYQFVAMLASLAMPLFFVTGWMLYLKRRKQKKLTQAARQSLAGHYIDQNAKPWLITYATQTGVAEQLAWSTATSLQEAHQPVQVKSVQQLTEADLQQHEQILFVISTYGTGEAPDLASNFAKKLLKTNLELQHVKYAVLALGSKEYPDTYCSFGYTVDEWLKNNGAKALFDIIEVDNANPADIQNWNQALVKATKLDLHAVNIEKVFDNWTLQQRDLLNPNSLGQPAYNIELTASHEAVWQAGDIAEIQPGNSPERINKFLQHHHILKNAVVDSLQVSIEKALWNKDLTGEIEPFANLDHLLEQLPTLPTREYSIASIPSQQVLRLVVRQQYDESGDLGLGSGWLTQHTEINQNVALRIRTNESFHLIDDNRPIICIGNGTGIAGLMSLLHTRTRHNYTENWLIFGERQRAHDFFYASTIEAWQTMGMLKRLDLAFSRDQEQRVYVQDIIRQNAAELVNWIERGAVLYVCGSIDGMASGVDQALIHILGEEQVDELRQQGRYRRDVY
>NZ_CP050415.1|WP_000125649.1|3421517_3422093_-|SdpI-family-protein
MTAKTLYAYTLQPVPYEVSEAEQRNAQLLIWRSTNKISTKIWAIMGVILALAILGLIFIKNYSTVICWVAIVCVVLYYLGRKYGLEWYVKRKMNEFPVQEIKGIRLGVQPHGIVMRQQMGLQEGVGTIGWKNIYEWYNTPDFILVNFKVKDPKGQEQQGAYILPKRMDSKNFSFNTIRKHLKESVGEPKTL
>NZ_CP050415.1|WP_001984830.1|3422193_3424368_-|TIGR01666-family-membrane-protein
MKSWFKRLKRATYNTSFMYNVRMLIAFSGTAFVPYFLGHQLATIPLTLGVVAAGLSDIDDRFSVRIMNLIYTYIGFFITAASVQLLFPYPMLFALGLIASCIGWILLGSLGRRYATISYGCLVVSVYTMLGVHLFDQWYIQPALLVAGAAWYGLIATISFLLFPVRQLQDKLAASYASLGDFLFAKSNLFDVDMTPASYQQSMIDLSLENGKLITIFNDLKTALLTRLKGDRGQKGTRRSLHYYFVAQDIHERADSAHIDYQKLAKIFQHSDILFRFQRILAIQGKACQELNECILQRKPYIHNKRFKQSFENLRLSLVKLRDDQQYDLLWVNALFALYRNLKSIDSQLLNLETEQHIQSDKVKQAENQLKDDDLKGWNDIVVRIKQNLTPESVLFRHAIRVSIVLFIGYVFIQMTHIEYGYWIMLTALFVSQPNFNATKRRLRLRIVGTLVGIIVGLSIVFLVPSVEGQLVMLILSGVLFFELRSKQYAQATAFITILALINFNLDGSAVAAAIPRFVDTLIGCALAWFGVTFIWPDWKFRRLPRSIRRSLQAQCNYLAEVVKQYHEGHNHALNYRIVRRAAHNTDAEVASLISTLATEPDFDPTRKSDIFEFLCLNHTFLSYIAALGAHREKIQDQAVLNVLDQALDDIQGALLRDEMPDLTAQNMLQTIRQRLSQNDEDDQKSLIILQQLSLMLSVLNRFSMLKQRLSHDLDNDASELASL
>NZ_CP050415.1|WP_034129408.1|3424495_3425710_+|multidrug-effflux-MFS-transporter
MSEQTAQRQYSIGWIMLLALLTALGPLSIDMYLPALPQMAHDFGVSTQMVANTLPAYFFGLAIGQLVYGPLSDRIGRKKPLYFGLALYAVASLFCVLATNEWSLIAARILQALGGCVGVVMARAAIRDRLDVQGSAQAFSSMMIVMGLAPILAPMIGAWILIWFPWQAIFIALSIVGAICWLCVHFFFKETLAVDKRLKLSLYQVATLYGAIFKDASFRLPMFAGCLTGAALFCYISSAPAVFMDQYGLNQQEFAYVFGLNAFGIMLMSSLNKHLTTRVEITKRLKAGSMVQVTGASIVLIAGLISAAPLWLVMLGLFLAISGIGLTGPNAMALAMSKQGARAGTASAIMGSMQFACGLLGGVLLNFLIWSASLNMGVMMVLFTLSGFIVVVKAIRQAKSQSLS
>NZ_CP050415.1|WP_001047593.1|3425737_3426442_-|nitroreductase
MNLEQVRLVDEAITSRHSVRAFLSTPIEPEVIKDILRVASRAPSGTNTQPWKVYVVTGHKRDEMVERVCAAQIEVSKNPELAEQYKETFAYYPEKWVSPFIDRRRENGWGLYGLLDIKKGEKEKMAAQQLRNFKLFDAPVGIFFTVNKAMGIGSKMDIAMMIQNVMVAAKARGLDTCPQAAWNHFHPLVLDILGAADDEELVCAIALGHADPEHIVNTFITPREPVENFAVFLD
>NZ_CP050415.1|WP_002010643.1|3426952_3427156_+|hypothetical-protein
MSLPLINKQFMKQGLAITIATMKMNVTHATTEPQEIQQLGTDLNALFFNEKEKGTDSRVMTMACYSL
>NZ_CP050415.1|WP_000490937.1|3427338_3427479_+|hypothetical-protein
MFSGAMNLFYLKGAFSHVTFKGLVLGMMLLKLVTVIAIQVTLKVFP
>NZ_CP050415.1|WP_001005337.1|3427578_3429054_+|alanine:cation-symporter-family-protein
MNEQLNATLMSWVQFFNEPLWDFLVIFLLAVGIFYTVLTGAVQIRMFLQSIRVMKSSRTEGEDEHGLTPFQAFVTGLASRVGVGNIAGVAIAIAIGGPGAVFWMWVTAVLGMSSAFIESTLAQLFKVRDSNSKQFRGGPAYYITQGLRSKTFGVIFALALIFTYGFVFNSVQINAIANASSHAWGWDKANLIAHLGGVDLEISWVGLALVVMVALAIFGGIKRIAKFAEMFVPLKAGLYLSVALYIALSNYAILPDVLKLIVTEAFHFNAAAGGFFGAAVSMAMMQGIKRGLFSNEAGMGSAPNAAAASDVKHPVNQGLVQMLGVFVDTFIVCTSTAIIILVSGVYQDAGFVGVELTQRALETQVGHWGADFLAVLLFLFCYSAVLGNYAYAESNVQFINNNPKVMFIFRIFVLVMVYFGAIGSVPLVWSMADLFMGIMATINLVAILLLTPMARTLLKDYRAQLKQGIKEPVFKINKYPELKKKVDSDIW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1 : 3530

Acinetobacter_phage(66.67%)

integrase

attL 206:217|attR 10467:10478

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163072253.1\|1_331_+	hypothetical protein	A0A0P0I8L9	Acinetobacter_phage	2.9e-55	99.1
206:217	attL	NA	NA	NA	NA
WP_053502695.1\|373_919_+	N-acetylmuramidase	A0A0P0IW03	Acinetobacter_phage	2.3e-97	96.6
WP_000084540.1\|1046_1241_+	hypothetical protein	A0A1B1P9F8	Acinetobacter_phage	1.3e-28	93.8
WP_049083155.1\|1237_2452_-\|integrase	tyrosine-type recombinase/integrase	A0A0P0IRB7	Acinetobacter_phage	5.9e-122	55.9
WP_000047853.1\|2773_3265_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.7e-30	44.3
WP_001979799.1\|3266_3530_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	2.4e-20	58.0
10467:10478	attR	NA	NA	NA	NA

DBSCAN-SWA_2

208227 : 223790

Acinetobacter_phage(95.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034129528.1\|208227_208551_-	hypothetical protein	A0A0P0IRC4	Acinetobacter_phage	4.2e-51	91.6
WP_034129527.1\|208553_208994_-	hypothetical protein	A0A0N7IRE9	Acinetobacter_phage	4.1e-73	96.6
WP_002132479.1\|209194_209557_-	hypothetical protein	NA	NA	NA	NA
WP_002132644.1\|209567_210047_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_003113565.1\|210043_210547_-	hypothetical protein	NA	NA	NA	NA
WP_000370480.1\|210791_210968_-	hypothetical protein	A0A0P0IKK4	Acinetobacter_phage	1.2e-23	100.0
WP_000792749.1\|210982_211747_-	LexA family transcriptional regulator	J7I4M9	Acinetobacter_phage	3.6e-141	98.4
WP_000165919.1\|211824_212010_+	hypothetical protein	J7HXD2	Acinetobacter_phage	1.4e-27	98.4
WP_000041062.1\|212019_212376_+	hypothetical protein	J7I452	Acinetobacter_phage	3.9e-58	98.3
WP_002132662.1\|212425_212710_+	hypothetical protein	A0A0P0IVP2	Acinetobacter_phage	1.7e-35	89.0
WP_002037796.1\|212781_213006_+	hypothetical protein	A0A0P0I444	Acinetobacter_phage	6.5e-35	98.6
WP_002132490.1\|212998_213880_+	replication protein	A0A0P0IKQ2	Acinetobacter_phage	3.2e-141	99.0
WP_002132664.1\|213882_214683_+	hypothetical protein	A0A0P0IDV1	Acinetobacter_phage	3.3e-145	97.0
WP_000647822.1\|214679_215033_+	hypothetical protein	A0A0P0I8A5	Acinetobacter_phage	1.0e-29	55.6
WP_032050422.1\|215025_215418_+	hypothetical protein	J7HXM5	Acinetobacter_phage	1.2e-07	57.8
WP_000100169.1\|215417_215819_+	DUF559 domain-containing protein	A0A0P0I8E8	Acinetobacter_phage	2.6e-66	95.4
WP_001277128.1\|215815_216292_+	hypothetical protein	A0A2H4J548	uncultured_Caudovirales_phage	1.2e-25	40.3
WP_000861102.1\|216263_216518_+	hypothetical protein	NA	NA	NA	NA
WP_001039309.1\|216980_217325_+	hypothetical protein	NA	NA	NA	NA
WP_000152665.1\|217533_217770_+	hypothetical protein	NA	NA	NA	NA
WP_001136775.1\|218431_218887_+	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	3.5e-83	98.7
WP_031958899.1\|218946_219381_+	hypothetical protein	A0A0P0IVP9	Acinetobacter_phage	1.1e-78	98.6
WP_034129526.1\|220798_221716_+	hypothetical protein	A0A0P0IL42	Acinetobacter_phage	1.6e-164	96.1
WP_005120390.1\|221786_222302_+	hypothetical protein	A0A0P0J095	Acinetobacter_phage	1.3e-70	94.9
WP_001138125.1\|222321_222600_+	hypothetical protein	J7I481	Acinetobacter_phage	9.9e-49	100.0
WP_001076396.1\|222963_223146_+	hypothetical protein	NA	NA	NA	NA
WP_001019745.1\|223244_223790_+	N-acetylmuramidase	A0A0B5L5G7	Acinetobacter_phage	2.1e-95	92.3

DBSCAN-SWA_3

386733 : 405303

Acinetobacter_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000495834.1\|386733_387300_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	2.4e-25	42.4
WP_000906487.1\|387369_387624_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	8.8e-12	66.7
WP_001185176.1\|387870_389151_-	aspartate kinase	NA	NA	NA	NA
WP_000417504.1\|389360_389612_-	hypothetical protein	NA	NA	NA	NA
WP_001038567.1\|389612_389957_-	hypothetical protein	A0A0P0IYD2	Acinetobacter_phage	1.7e-37	76.8
WP_000566305.1\|389953_390340_-	hypothetical protein	NA	NA	NA	NA
WP_000655910.1\|390336_390624_-	hypothetical protein	A0A0P0J0F2	Acinetobacter_phage	1.2e-36	86.7
WP_000434519.1\|390629_390995_-	hypothetical protein	A0A1B1P9I4	Acinetobacter_phage	3.5e-54	83.3
WP_000986112.1\|390995_391286_-	hypothetical protein	NA	NA	NA	NA
WP_017815857.1\|391423_392452_-	ead/Ea22-like family protein	A0A2I7QY11	Vibrio_phage	3.8e-13	29.0
WP_017815856.1\|392464_393145_-	3'-5' exonuclease	NA	NA	NA	NA
WP_017815855.1\|393315_393687_-	hypothetical protein	A0A0D4DCB5	Acinetobacter_phage	6.4e-11	41.6
WP_001072368.1\|393683_394013_-	hypothetical protein	NA	NA	NA	NA
WP_017815854.1\|394071_394332_-	hypothetical protein	NA	NA	NA	NA
WP_017815853.1\|394417_395221_-	DUF2303 family protein	A0A2R2Z323	Escherichia_phage	6.2e-27	32.3
WP_000080848.1\|395260_395593_-	hypothetical protein	NA	NA	NA	NA
WP_000922095.1\|395808_396084_-	hypothetical protein	NA	NA	NA	NA
WP_000550612.1\|396095_396785_-	helix-turn-helix domain-containing protein	A0A0R6PCY1	Moraxella_phage	5.0e-25	37.1
WP_000335919.1\|396911_397145_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000818521.1\|397177_397552_+	hypothetical protein	NA	NA	NA	NA
WP_000290738.1\|397585_397786_+	hypothetical protein	NA	NA	NA	NA
WP_000200037.1\|397782_397968_+	hypothetical protein	NA	NA	NA	NA
WP_000575717.1\|397964_398420_+	hypothetical protein	NA	NA	NA	NA
WP_000218441.1\|398416_399046_+	hypothetical protein	R9VWB9	Serratia_phage	1.0e-29	37.8
WP_000817336.1\|399042_399582_+	HNH endonuclease	Q94MV4	Myxococcus_phage	8.1e-31	55.7
WP_006581306.1\|399626_400187_+	hypothetical protein	NA	NA	NA	NA
WP_004708298.1\|400192_400579_+	hypothetical protein	NA	NA	NA	NA
WP_049581661.1\|400575_402054_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	1.4e-133	53.1
WP_000124477.1\|402057_403101_+	hypothetical protein	A0A2H4J580	uncultured_Caudovirales_phage	4.3e-28	52.8
WP_006581303.1\|403097_403862_+	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	2.3e-63	47.7
WP_000991091.1\|403858_404392_+	hypothetical protein	NA	NA	NA	NA
WP_001136753.1\|404847_405303_+	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	2.2e-53	68.9

DBSCAN-SWA_4

584845 : 634497

Faecalibacterium_phage(28.57%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010326927.1\|584845_585871_-\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	8.8e-26	30.7
WP_086225825.1\|586536_586845_+	hypothetical protein	NA	NA	NA	NA
WP_001049899.1\|587128_588040_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001987220.1\|588385_589639_+	divalent metal cation transporter	NA	NA	NA	NA
WP_004793259.1\|589673_590438_+	LamB/YcsF family protein	NA	NA	NA	NA
WP_000276200.1\|590449_591256_+	putative hydro-lyase	NA	NA	NA	NA
WP_001211791.1\|591288_592872_+	5-oxoprolinase/urea amidolyase family protein	NA	NA	NA	NA
WP_031945278.1\|592871_594590_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_000698627.1\|594893_596114_+	chloride channel protein	A0A1X9I5Z9	Streptococcus_phage	1.2e-32	29.7
WP_000465117.1\|596221_597130_+	sel1 repeat family protein	NA	NA	NA	NA
WP_000792047.1\|597191_597776_+	hypothetical protein	NA	NA	NA	NA
WP_000343018.1\|597905_599114_+\|transposase	IS256-like element ISAba26 family transposase	A0A218MNI5	uncultured_virus	3.1e-46	46.5
WP_001133101.1\|599744_600305_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000921222.1\|600365_600797_-	SRPBCC family protein	NA	NA	NA	NA
WP_001202397.1\|601049_602213_+	glutathione-dependent formaldehyde dehydrogenase	E3SJ82	Synechococcus_phage	5.3e-11	26.7
WP_001090535.1\|602527_603268_+	DUF1989 domain-containing protein	NA	NA	NA	NA
WP_020752992.1\|603283_603937_+	DUF1989 domain-containing protein	NA	NA	NA	NA
WP_031958889.1\|603939_607545_+	urea carboxylase	NA	NA	NA	NA
WP_020752994.1\|607583_608120_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_001140540.1\|608213_608561_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000821714.1\|608654_609194_+	hypothetical protein	NA	NA	NA	NA
WP_133224635.1\|609365_609491_+	hypothetical protein	NA	NA	NA	NA
WP_001118705.1\|609495_609930_+	transcriptional regulator	NA	NA	NA	NA
WP_000916852.1\|609942_611754_+	allophanate hydrolase	NA	NA	NA	NA
WP_000592888.1\|611750_612773_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001000083.1\|612824_613706_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-38	38.7
WP_000542529.1\|613705_614650_-	ABC transporter permease	NA	NA	NA	NA
WP_000043351.1\|614745_615147_-	hypothetical protein	NA	NA	NA	NA
WP_005120102.1\|615292_617923_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.5e-279	54.7
WP_000059480.1\|617919_618858_+	hypothetical protein	NA	NA	NA	NA
WP_034129565.1\|618862_621616_+	hypothetical protein	NA	NA	NA	NA
WP_000864764.1\|621617_622394_+	hypothetical protein	NA	NA	NA	NA
WP_002009182.1\|622397_622874_+	hypothetical protein	NA	NA	NA	NA
WP_002037038.1\|622887_623181_+	hypothetical protein	NA	NA	NA	NA
WP_169059676.1\|623184_623547_+	hypothetical protein	NA	NA	NA	NA
WP_010326927.1\|623584_624610_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	8.8e-26	30.7
WP_034129558.1\|625073_625979_+	sel1 repeat family protein	NA	NA	NA	NA
WP_077109274.1\|626234_626939_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_005111318.1\|626973_627171_-	hypothetical protein	NA	NA	NA	NA
WP_000869711.1\|627911_628604_+	hypothetical protein	NA	NA	NA	NA
WP_001119042.1\|628620_629124_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001066523.1\|629116_630598_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000653195.1\|630647_631151_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_001047031.1\|631230_631707_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_031958288.1\|631723_633535_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_031958289.1\|633498_634497_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_5

1468380 : 1586232

124

Acinetobacter_phage(72.88%)

transposase,capsid,terminase,protease,holin,integrase,coat

attL 1477899:1477915|attR 1564048:1564064

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049592490.1\|1468380_1469091_+	hypothetical protein	A0A2H4JDZ2	uncultured_Caudovirales_phage	8.2e-07	28.0
WP_042791638.1\|1469225_1470242_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_049592489.1\|1470256_1470901_+	SOS response-associated peptidase family protein	A0A218MNF5	uncultured_virus	3.5e-57	48.8
WP_049592488.1\|1471015_1471510_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	3.1e-45	59.6
WP_025468246.1\|1471513_1472812_+	Y-family DNA polymerase	A0A2H4JBL5	uncultured_Caudovirales_phage	2.2e-154	60.3
WP_002061590.1\|1472889_1473636_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.7e-13	34.2
WP_002045824.1\|1473773_1474937_-	glutathione-dependent formaldehyde dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	5.5e-08	26.5
WP_005070343.1\|1475378_1475795_+	hypothetical protein	NA	NA	NA	NA
WP_002045818.1\|1475898_1476477_-	chitinase class I domain protein	A0A2H4JDB4	uncultured_Caudovirales_phage	3.9e-79	78.8
WP_002061588.1\|1476518_1476908_-	hypothetical protein	J7I481	Acinetobacter_phage	1.4e-64	96.1
WP_049592487.1\|1476976_1480423_-	bacteriophage protein	A0A0D4DBG7	Acinetobacter_phage	0.0e+00	96.3
1477899:1477915	attL	NA	NA	NA	NA
WP_000835171.1\|1480415_1480778_-	hypothetical protein	A0A0D4DCJ1	Acinetobacter_phage	2.3e-66	100.0
WP_046661079.1\|1480774_1481281_-	DUF1833 family protein	A0A0D4DCA4	Acinetobacter_phage	9.1e-93	100.0
WP_000277447.1\|1481280_1481679_-	hypothetical protein	A0A0P0IY66	Acinetobacter_phage	3.5e-71	96.2
WP_032002988.1\|1481739_1482216_-	hypothetical protein	NA	NA	NA	NA
WP_049592486.1\|1482251_1482839_-	hypothetical protein	NA	NA	NA	NA
WP_049592485.1\|1482929_1487861_-	tape measure protein	J7I4Q7	Acinetobacter_phage	0.0e+00	86.0
WP_000734512.1\|1487931_1488441_-	hypothetical protein	A0A0S0N7I7	Pseudomonas_phage	6.7e-19	35.4
WP_000966688.1\|1488540_1488945_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	3.9e-70	100.0
WP_000838146.1\|1489037_1489220_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	7.4e-29	100.0
WP_049592484.1\|1489545_1490061_-	hypothetical protein	A0A0D4DBX8	Acinetobacter_phage	1.4e-77	100.0
WP_169063648.1\|1490130_1491048_-	hypothetical protein	A0A0P0IL42	Acinetobacter_phage	2.3e-166	97.7
WP_049592482.1\|1491144_1492293_-	hypothetical protein	A0A0D4DCQ4	Acinetobacter_phage	2.0e-151	80.5
WP_000064610.1\|1492292_1492646_-	hypothetical protein	A0A0P0IY61	Acinetobacter_phage	5.1e-58	95.7
WP_025469889.1\|1492714_1493113_-	hypothetical protein	A0A0P0IRA6	Acinetobacter_phage	3.2e-69	95.5
WP_049592481.1\|1493114_1493483_-	hypothetical protein	A0A0D4DBN1	Acinetobacter_phage	7.2e-55	82.8
WP_049592480.1\|1493454_1493859_-	hypothetical protein	A0A0P0IKR8	Acinetobacter_phage	3.1e-67	95.5
WP_053094133.1\|1493908_1494619_-	hypothetical protein	NA	NA	NA	NA
WP_046267445.1\|1494656_1495025_-	hypothetical protein	A0A0P0I456	Acinetobacter_phage	5.0e-64	97.5
WP_031958850.1\|1495026_1495416_-	hypothetical protein	A0A0D4DC24	Acinetobacter_phage	1.8e-64	96.1
WP_049592478.1\|1495420_1496086_-	stress-responsive nuclear envelope protein	A0A0D4DBW4	Acinetobacter_phage	5.5e-114	99.5
WP_000214189.1\|1496152_1497109_-	hypothetical protein	A0A0D4DBM4	Acinetobacter_phage	2.1e-178	100.0
WP_000770049.1\|1497136_1497904_-	hypothetical protein	J7I0W4	Acinetobacter_phage	4.6e-120	100.0
WP_001139861.1\|1498017_1498209_-	hypothetical protein	A0A0P0IKM2	Acinetobacter_phage	1.7e-28	100.0
WP_000004365.1\|1498432_1498669_-	hypothetical protein	A0A0D4DC19	Acinetobacter_phage	4.8e-36	94.9
WP_000965231.1\|1498767_1499196_-	hypothetical protein	J7I4P3	Acinetobacter_phage	5.2e-73	100.0
WP_000179751.1\|1499204_1500308_-\|capsid	minor capsid protein	A0A0D4DBL9	Acinetobacter_phage	7.8e-206	99.7
WP_049592477.1\|1500309_1501761_-	DUF4055 domain-containing protein	A0A0D4DCP1	Acinetobacter_phage	3.6e-267	93.4
WP_049592476.1\|1501757_1503185_-\|terminase	phage terminase large subunit	J7I460	Acinetobacter_phage	2.2e-261	95.3
WP_000113273.1\|1503174_1503654_-	DUF2280 domain-containing protein	A0A0P0HSK4	Acinetobacter_phage	7.1e-71	95.8
WP_000787531.1\|1503701_1504349_-	hypothetical protein	A0A0N7IRF1	Acinetobacter_phage	4.7e-126	97.7
WP_000715267.1\|1504444_1505203_-	hypothetical protein	A0A0P0J0C5	Acinetobacter_phage	5.2e-116	80.2
WP_000508252.1\|1505433_1506198_-	hypothetical protein	A0A0P0IKQ5	Acinetobacter_phage	7.3e-86	91.8
WP_000783471.1\|1506280_1506781_-	hypothetical protein	A0A0P0IY98	Acinetobacter_phage	2.9e-91	97.6
WP_002125172.1\|1506777_1507173_-	DUF559 domain-containing protein	A0A0P0I8E8	Acinetobacter_phage	5.1e-67	96.9
WP_000378367.1\|1507172_1507496_-	hypothetical protein	NA	NA	NA	NA
WP_001039748.1\|1507485_1507665_-	hypothetical protein	NA	NA	NA	NA
WP_000778999.1\|1507661_1508060_-	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	5.8e-26	48.5
WP_000017820.1\|1508056_1508464_-	hypothetical protein	NA	NA	NA	NA
WP_002048056.1\|1508460_1508859_-	hypothetical protein	NA	NA	NA	NA
WP_002048053.1\|1508858_1508975_-	putative phage replication protein	A0A0P0IR92	Acinetobacter_phage	9.8e-11	91.7
WP_049592475.1\|1508971_1509931_-	helix-turn-helix domain-containing protein	A0A0P0HSN8	Acinetobacter_phage	4.4e-19	54.4
WP_000102848.1\|1509927_1510221_-	hypothetical protein	NA	NA	NA	NA
WP_001095600.1\|1510217_1510493_-	hypothetical protein	A0A0P0IVP2	Acinetobacter_phage	8.3e-40	96.7
WP_000041062.1\|1510548_1510905_-	hypothetical protein	J7I452	Acinetobacter_phage	3.9e-58	98.3
WP_002068237.1\|1510914_1511103_-	hypothetical protein	NA	NA	NA	NA
WP_002068239.1\|1511207_1511867_+	helix-turn-helix domain-containing protein	A0A2H4JAJ5	uncultured_Caudovirales_phage	5.1e-59	73.5
WP_002068240.1\|1511932_1512862_+	hypothetical protein	NA	NA	NA	NA
WP_002068223.1\|1512873_1513785_+	hypothetical protein	NA	NA	NA	NA
WP_049592474.1\|1513989_1514430_+	hypothetical protein	A0A0N7IRE9	Acinetobacter_phage	4.1e-73	97.3
WP_049592473.1\|1514432_1514756_+	hypothetical protein	A0A0P0IRC4	Acinetobacter_phage	3.7e-55	97.2
WP_049592472.1\|1514767_1515889_+	ATP-binding protein	A0A0D4DBX7	Acinetobacter_phage	9.7e-212	99.7
WP_049592471.1\|1515885_1516950_+	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	2.2e-128	70.1
WP_000043827.1\|1516949_1517246_+	hypothetical protein	NA	NA	NA	NA
WP_002055027.1\|1517246_1517516_+	hypothetical protein	A0A0N7IRE8	Acinetobacter_phage	1.1e-41	97.8
WP_049592470.1\|1517521_1518784_-\|integrase	integrase family protein	A0A0P0IKP2	Acinetobacter_phage	3.6e-247	99.3
WP_000037347.1\|1519282_1520146_-	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_000043926.1\|1520469_1521042_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000075452.1\|1521653_1522994_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_169538899.1\|1523412_1524831_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_000474098.1\|1525041_1526097_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_086225912.1\|1526153_1526657_+	hypothetical protein	NA	NA	NA	NA
WP_001290023.1\|1526717_1527746_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_031958820.1\|1527745_1528876_-	YdcF family protein	NA	NA	NA	NA
WP_005119988.1\|1528880_1529915_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_000388070.1\|1529934_1530438_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_135536659.1\|1530738_1531977_-	lactonase family protein	NA	NA	NA	NA
WP_000017865.1\|1532208_1533366_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_000165805.1\|1533365_1533800_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_000632984.1\|1533848_1536077_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_000285272.1\|1536400_1538467_-	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	1.8e-41	31.6
WP_000739695.1\|1538590_1539205_-\|protease	metalloprotease secretion chaperone CpaB	NA	NA	NA	NA
WP_005119983.1\|1539227_1541009_-	metalloendopeptidase CpaA	NA	NA	NA	NA
WP_049592468.1\|1541275_1542754_-	multidrug efflux MFS transporter AmvA	A0A0M3UL24	Mycobacterium_phage	3.0e-27	26.2
WP_000323807.1\|1542878_1543457_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_000588773.1\|1543504_1544764_-	serine hydrolase	NA	NA	NA	NA
WP_001097350.1\|1544835_1545690_-	hypothetical protein	NA	NA	NA	NA
WP_150408878.1\|1545763_1547155_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
WP_000047940.1\|1547390_1548959_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_002010078.1\|1549025_1549460_-	chlorhexidine efflux PACE transporter AceI	NA	NA	NA	NA
WP_001024732.1\|1549550_1550444_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_049592467.1\|1550574_1551564_+	transaldolase	NA	NA	NA	NA
WP_000467074.1\|1551636_1552287_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_000344223.1\|1552323_1552797_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_001169535.1\|1552983_1554156_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_000775740.1\|1554229_1554949_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	2.3e-12	37.8
WP_034129278.1\|1554964_1557721_-	magnesium-translocating P-type ATPase	M1HBF8	Paramecium_bursaria_Chlorella_virus	5.4e-38	25.3
WP_002036117.1\|1557821_1557983_-	hypothetical protein	NA	NA	NA	NA
WP_000221476.1\|1558284_1558728_-	RDD family protein	NA	NA	NA	NA
WP_034129279.1\|1559000_1559174_-	hypothetical protein	NA	NA	NA	NA
WP_000774578.1\|1559352_1559580_-	hypothetical protein	NA	NA	NA	NA
WP_001109442.1\|1559867_1560311_+	universal stress protein	NA	NA	NA	NA
WP_034129280.1\|1560570_1562157_+	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SGN0	Hokovirus	3.8e-20	26.2
WP_000720299.1\|1562225_1562657_-	hypothetical protein	NA	NA	NA	NA
WP_000161254.1\|1563087_1563219_-	hypothetical protein	NA	NA	NA	NA
WP_001989301.1\|1563398_1564511_-	OmpW family protein	NA	NA	NA	NA
1564048:1564064	attR	NA	NA	NA	NA
WP_031958126.1\|1564818_1566975_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_000343018.1\|1567540_1568749_-\|transposase	IS256-like element ISAba26 family transposase	A0A218MNI5	uncultured_virus	3.1e-46	46.5
WP_000825554.1\|1569033_1569417_-	hypothetical protein	NA	NA	NA	NA
WP_000650375.1\|1569591_1569873_-	hypothetical protein	NA	NA	NA	NA
WP_001123841.1\|1570061_1570532_-	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	1.4e-31	45.4
WP_000179474.1\|1570944_1571196_-	hypothetical protein	NA	NA	NA	NA
WP_000345332.1\|1571494_1572730_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_000527031.1\|1573179_1575417_+	TonB-dependent receptor	NA	NA	NA	NA
WP_001133114.1\|1575479_1576034_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001243511.1\|1576973_1577312_-	hypothetical protein	NA	NA	NA	NA
WP_000262548.1\|1577908_1578406_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_005110386.1\|1578434_1578992_-	chorismate mutase	NA	NA	NA	NA
WP_000920706.1\|1579069_1579753_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001279982.1\|1580532_1581219_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_000055764.1\|1581445_1582465_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_000873967.1\|1582455_1584915_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000739317.1\|1584924_1585629_-	molecular chaperone	NA	NA	NA	NA
WP_000750672.1\|1585701_1586232_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_6

1631747 : 1639979

Acinetobacter_phage(100.0%)

integrase,capsid

attL 1627110:1627125|attR 1640131:1640146

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1627110:1627125	attL	NA	NA	NA	NA
WP_009499909.1\|1631747_1632014_-	hypothetical protein	A0A1B1P9E1	Acinetobacter_phage	3.3e-41	90.9
WP_049592463.1\|1632013_1632541_-	Rha family transcriptional regulator	A0A1B1P9D9	Acinetobacter_phage	3.9e-54	63.7
WP_049592462.1\|1632701_1633097_-	prophage PSSB64-02	A0A1B1P9D6	Acinetobacter_phage	2.0e-66	92.4
WP_049592461.1\|1633098_1633554_-	hypothetical protein	A0A1B1P9D5	Acinetobacter_phage	5.8e-54	73.5
WP_049592460.1\|1633558_1633951_-	hypothetical protein	A0A1B1P9E3	Acinetobacter_phage	2.2e-62	90.0
WP_016653817.1\|1633954_1634341_-	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	1.6e-65	97.7
WP_000818586.1\|1634397_1634583_-	hypothetical protein	A0A1B1P9F4	Acinetobacter_phage	4.3e-24	86.7
WP_001139644.1\|1634594_1635611_-	hypothetical protein	A0A1B1P9D0	Acinetobacter_phage	1.1e-166	87.6
WP_049592459.1\|1635628_1636354_-	hypothetical protein	A0A1B1P9C7	Acinetobacter_phage	4.7e-74	90.9
WP_004888437.1\|1636439_1636652_-	hypothetical protein	NA	NA	NA	NA
WP_049592458.1\|1636648_1637734_-\|capsid	minor capsid protein	A0A1B1P9B7	Acinetobacter_phage	2.9e-197	98.1
WP_000039877.1\|1638504_1638774_+	helix-turn-helix domain-containing protein	A0A0N7IRE8	Acinetobacter_phage	1.8e-15	53.5
WP_020753295.1\|1638770_1639979_-\|integrase	integrase family protein	A0A0P0IKP2	Acinetobacter_phage	4.8e-108	48.0
1640131:1640146	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1851914 : 1904958

Acinetobacter_phage(86.89%)

terminase,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000457893.1\|1851914_1853168_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.3e-97	52.3
WP_002036954.1\|1853228_1853390_+	hypothetical protein	NA	NA	NA	NA
WP_020753345.1\|1853413_1854643_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_001147935.1\|1854892_1855579_+	DUF3820 family protein	A0A059VJT9	Pseudomonas_phage	1.1e-35	41.6
WP_160948541.1\|1855723_1856359_+	hypothetical protein	NA	NA	NA	NA
WP_041172232.1\|1856616_1856808_-	hypothetical protein	A0A1B1P9F8	Acinetobacter_phage	1.3e-28	96.8
WP_046693204.1\|1856902_1857481_-	glycoside hydrolase	A0A2H4JDB4	uncultured_Caudovirales_phage	5.0e-79	78.3
WP_000433899.1\|1857522_1857912_-	hypothetical protein	A0A0P0IYC0	Acinetobacter_phage	1.6e-65	98.4
WP_169063651.1\|1857980_1861427_-	hypothetical protein	A0A0D4DBG7	Acinetobacter_phage	0.0e+00	97.2
WP_000835171.1\|1861419_1861782_-	hypothetical protein	A0A0D4DCJ1	Acinetobacter_phage	2.3e-66	100.0
WP_046661079.1\|1861778_1862285_-	DUF1833 family protein	A0A0D4DCA4	Acinetobacter_phage	9.1e-93	100.0
WP_000277447.1\|1862284_1862683_-	hypothetical protein	A0A0P0IY66	Acinetobacter_phage	3.5e-71	96.2
WP_032002988.1\|1862743_1863220_-	hypothetical protein	NA	NA	NA	NA
WP_049592486.1\|1863255_1863843_-	hypothetical protein	NA	NA	NA	NA
WP_049592485.1\|1863933_1868865_-	tape measure protein	J7I4Q7	Acinetobacter_phage	0.0e+00	86.0
WP_000734512.1\|1868935_1869445_-	hypothetical protein	A0A0S0N7I7	Pseudomonas_phage	6.7e-19	35.4
WP_000966688.1\|1869544_1869949_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	3.9e-70	100.0
WP_000838146.1\|1870041_1870224_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	7.4e-29	100.0
WP_150408856.1\|1870549_1871065_-	hypothetical protein	A0A0D4DBX8	Acinetobacter_phage	1.4e-72	100.0
WP_038346476.1\|1871134_1872052_-	hypothetical protein	A0A0P0IL42	Acinetobacter_phage	5.0e-166	97.7
WP_150408857.1\|1872148_1873291_-\|tail	phage tail protein	J7I0X3	Acinetobacter_phage	1.1e-146	84.4
WP_031958856.1\|1873290_1873644_-	hypothetical protein	A0A0P0IY61	Acinetobacter_phage	6.6e-58	94.0
WP_009517131.1\|1873712_1874111_-	hypothetical protein	A0A0P0IRA6	Acinetobacter_phage	5.0e-70	97.0
WP_032016325.1\|1874112_1874481_-	hypothetical protein	A0A0D4DBN1	Acinetobacter_phage	1.5e-60	93.4
WP_031958853.1\|1874582_1875278_-	hypothetical protein	NA	NA	NA	NA
WP_031958852.1\|1875315_1875684_-	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.5e-63	96.7
WP_031958850.1\|1875685_1876075_-	hypothetical protein	A0A0D4DC24	Acinetobacter_phage	1.8e-64	96.1
WP_004743766.1\|1876079_1876745_-	hypothetical protein	J7I4P7	Acinetobacter_phage	1.5e-114	100.0
WP_000214189.1\|1876810_1877767_-	hypothetical protein	A0A0D4DBM4	Acinetobacter_phage	2.1e-178	100.0
WP_000770049.1\|1877794_1878562_-	hypothetical protein	J7I0W4	Acinetobacter_phage	4.6e-120	100.0
WP_001139861.1\|1878675_1878867_-	hypothetical protein	A0A0P0IKM2	Acinetobacter_phage	1.7e-28	100.0
WP_000004365.1\|1879090_1879327_-	hypothetical protein	A0A0D4DC19	Acinetobacter_phage	4.8e-36	94.9
WP_000965231.1\|1879425_1879854_-	hypothetical protein	J7I4P3	Acinetobacter_phage	5.2e-73	100.0
WP_000179751.1\|1879862_1880966_-\|capsid	minor capsid protein	A0A0D4DBL9	Acinetobacter_phage	7.8e-206	99.7
WP_053502687.1\|1880972_1882418_-	DUF4055 domain-containing protein	A0A0D4DCP1	Acinetobacter_phage	1.1e-279	97.9
WP_031380860.1\|1882414_1883842_-\|terminase	phage terminase large subunit	A0A0D4DCE6	Acinetobacter_phage	1.1e-268	94.7
WP_000212566.1\|1883831_1884302_-	DUF2280 domain-containing protein	A0A0D4DC15	Acinetobacter_phage	3.0e-82	100.0
WP_075703200.1\|1884360_1885002_-	hypothetical protein	J7I4N9	Acinetobacter_phage	2.6e-124	97.7
WP_150408859.1\|1884970_1885438_-	hypothetical protein	A0A0P0IRI6	Acinetobacter_phage	7.9e-67	80.0
WP_150408860.1\|1885482_1886553_-	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	3.5e-33	30.7
WP_150408861.1\|1886640_1886925_-	DUF968 domain-containing protein	A0A0D4DC07	Acinetobacter_phage	1.3e-19	58.8
WP_000379606.1\|1886917_1887088_-	hypothetical protein	NA	NA	NA	NA
WP_150408862.1\|1887090_1887336_-	hypothetical protein	NA	NA	NA	NA
WP_057050826.1\|1887931_1888447_-	hypothetical protein	A0A0P0I4C3	Acinetobacter_phage	5.2e-19	36.6
WP_025467973.1\|1888457_1888727_-	hypothetical protein	A0A0D4DC03	Acinetobacter_phage	1.9e-44	98.9
WP_057050825.1\|1888737_1889412_-	metallophosphoesterase	A0A1J0MGN8	Acinetobacter_phage	7.2e-53	51.0
WP_025466342.1\|1889844_1890051_-	hypothetical protein	NA	NA	NA	NA
WP_150408864.1\|1890143_1890572_-	hypothetical protein	A0A0D4DBZ8	Acinetobacter_phage	5.5e-06	40.6
WP_150408865.1\|1890573_1890879_-	hypothetical protein	E2GLW0	Acinetobacter_phage	6.9e-11	44.6
WP_038349691.1\|1890875_1891073_-	hypothetical protein	I2GUD0	Acinetobacter_phage	3.0e-28	96.9
WP_053502685.1\|1891065_1891437_-	hypothetical protein	A0A0A0RTI7	Acinetobacter_phage	2.3e-29	59.2
WP_166470195.1\|1891433_1891610_-	hypothetical protein	A0A1B1P9H7	Acinetobacter_phage	2.1e-20	87.9
WP_000644295.1\|1891606_1891858_-	hypothetical protein	A0A0P0IE39	Acinetobacter_phage	5.8e-40	98.8
WP_079739360.1\|1891854_1892652_-	DNA cytosine methyltransferase	A0A2I7QZY6	Vibrio_phage	6.7e-66	54.1
WP_032008034.1\|1892648_1893974_-	AAA family ATPase	A0A0P0IVX0	Acinetobacter_phage	6.3e-234	92.3
WP_000061204.1\|1893973_1894867_-	GntR family transcriptional regulator	A0A068C8G6	Acinetobacter_phage	3.5e-47	46.8
WP_000047869.1\|1894863_1895031_-	hypothetical protein	NA	NA	NA	NA
WP_150408866.1\|1895126_1895393_-	hypothetical protein	A0A1B1P9I3	Acinetobacter_phage	3.6e-32	80.7
WP_001068245.1\|1895403_1895634_-	hypothetical protein	A0A1B1P9I7	Acinetobacter_phage	1.6e-36	100.0
WP_000867174.1\|1895758_1896505_+	helix-turn-helix domain-containing protein	A0A1B1P9J5	Acinetobacter_phage	1.3e-140	100.0
WP_002042732.1\|1896520_1896736_+	hypothetical protein	A0A0P0I8I5	Acinetobacter_phage	5.5e-31	98.6
WP_000065151.1\|1896868_1899136_+	N-6 DNA methylase	J7I0U9	Acinetobacter_phage	0.0e+00	100.0
WP_020753285.1\|1899337_1899529_+	hypothetical protein	A0A1B1P9G9	Acinetobacter_phage	4.1e-14	66.7
WP_020753286.1\|1899528_1899822_+	hypothetical protein	NA	NA	NA	NA
WP_005138398.1\|1899891_1900275_+	hypothetical protein	NA	NA	NA	NA
WP_049582463.1\|1900274_1900604_+	hypothetical protein	NA	NA	NA	NA
WP_049582464.1\|1900613_1901465_+	PD-(D/E)XK nuclease-like domain-containing protein	G8CLD3	Synechococcus_phage	1.6e-33	31.6
WP_001056665.1\|1901467_1902364_+	hypothetical protein	NA	NA	NA	NA
WP_032049393.1\|1902373_1902742_+	hypothetical protein	A0A1B1P9I4	Acinetobacter_phage	5.3e-66	99.2
WP_053502682.1\|1902770_1903097_+	hypothetical protein	I2GUB3	Acinetobacter_phage	4.2e-22	61.7
WP_000854113.1\|1903083_1903308_+	hypothetical protein	I2GUB4	Acinetobacter_phage	1.1e-37	94.6
WP_053502680.1\|1903304_1903514_+	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	2.4e-31	92.8
WP_053502678.1\|1903510_1903723_+	hypothetical protein	NA	NA	NA	NA
WP_017816604.1\|1903719_1903911_+	hypothetical protein	A0A0D4DCB1	Acinetobacter_phage	6.6e-28	95.2
WP_053502675.1\|1903912_1904182_+	hypothetical protein	A0A172Q0P4	Acinetobacter_phage	2.3e-18	57.3
WP_000401870.1\|1904182_1904383_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001033994.1\|1904484_1904958_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.2e-23	42.3

DBSCAN-SWA_8

3884985 : 3899782

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001187844.1\|3884985_3885534_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.7e-97	100.0
WP_000893694.1\|3885796_3887296_+	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	2.1e-278	97.0
WP_001076827.1\|3887297_3889673_+	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	97.9
WP_001164242.1\|3889679_3890663_+	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	2.9e-183	96.3
WP_000066126.1\|3890673_3891369_-	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	5.8e-122	100.0
WP_000608310.1\|3891378_3892185_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.9e-146	99.3
WP_001982145.1\|3892194_3893244_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.8e-190	100.0
WP_000281148.1\|3893599_3896332_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	98.2
WP_074163530.1\|3896345_3899111_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	0.0e+00	98.7
WP_000566785.1\|3899206_3899782_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	A0A0P0IKJ1	Acinetobacter_phage	1.2e-109	99.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP050416

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 55293

Pandoravirus(11.11%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004896925.1\|894_1437_+	hypothetical protein	NA	NA	NA	NA
WP_000155092.1\|1795_2680_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000052512.1\|2735_4211_-	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_002001451.1\|4609_5794_-\|transposase	IS4-like element ISEc29 family transposase	A0A0F7LAS3	uncultured_marine_virus	4.5e-50	35.4
WP_002026779.1\|5842_6028_+	hypothetical protein	NA	NA	NA	NA
WP_077252464.1\|6247_6529_+	hypothetical protein	NA	NA	NA	NA
WP_000359986.1\|6509_7283_-	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_001206290.1\|7524_8733_-\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	3.1e-171	71.4
WP_000050481.1\|10018_11560_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|11964_12804_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|12797_13145_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_012300772.1\|13336_14596_-	chloramphenicol efflux MFS transporter CmlA5	S4TR35	Salmonella_phage	1.7e-26	31.7
WP_000237816.1\|14916_15369_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-2	NA	NA	NA	NA
WP_001067855.1\|16391_17096_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000647189.1\|18521_19022_-	hypothetical protein	I3UMJ0	Colwellia_phage	1.7e-19	43.3
WP_002210541.1\|19030_19342_-	hypothetical protein	NA	NA	NA	NA
WP_005507681.1\|19347_19779_-	hypothetical protein	NA	NA	NA	NA
WP_000344151.1\|19846_20521_-	thymidylate kinase	NA	NA	NA	NA
WP_014342216.1\|20507_20627_+	hypothetical protein	NA	NA	NA	NA
WP_001125905.1\|20769_21147_-	hypothetical protein	A0A2H4P7P5	Pseudomonas_phage	2.2e-22	49.6
WP_000939033.1\|21465_21609_+	hypothetical protein	NA	NA	NA	NA
WP_000074431.1\|21700_22336_+	N-6 DNA methylase	NA	NA	NA	NA
WP_000703827.1\|22388_22661_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001207227.1\|22709_23891_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.4e-11	28.7
WP_045544682.1\|23894_24680_-	ParA family protein	A0A1X9IGI7	Lactococcus_phage	2.1e-11	26.8
WP_014342215.1\|24707_24839_+	hypothetical protein	NA	NA	NA	NA
WP_000338945.1\|24853_25165_-	hypothetical protein	NA	NA	NA	NA
WP_001043260.1\|25471_26287_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000251875.1\|26373_26676_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001445143.1\|26569_26821_-	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|26851_28345_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_049581834.1\|30256_30751_-	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	5.3e-29	37.1
WP_049581831.1\|30750_31575_-	thymidylate synthase	A0A2R4A1R4	Microbacterium_phage	1.8e-98	63.9
WP_101458100.1\|31578_32016_-	bifunctional nuclease family protein	NA	NA	NA	NA
WP_001120888.1\|32179_33673_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000743213.1\|33883_34108_-	hypothetical protein	NA	NA	NA	NA
WP_000480968.1\|34227_35064_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|35063_35867_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001144971.1\|36249_38037_-	hypothetical protein	NA	NA	NA	NA
WP_000386247.1\|38246_38651_+	hypothetical protein	NA	NA	NA	NA
WP_000131185.1\|39103_41365_-	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	4.0e-63	32.5
WP_001101323.1\|41538_42642_+	hypothetical protein	NA	NA	NA	NA
WP_002015149.1\|42957_43869_+	hypothetical protein	NA	NA	NA	NA
WP_000038505.1\|43900_44236_-	hypothetical protein	NA	NA	NA	NA
WP_002015113.1\|44276_44492_-	hypothetical protein	NA	NA	NA	NA
WP_000420425.1\|44535_44865_-	DUF1456 family protein	NA	NA	NA	NA
WP_000941930.1\|44845_45673_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_000913724.1\|45659_46391_-	hypothetical protein	NA	NA	NA	NA
WP_001090439.1\|46734_47229_+	hypothetical protein	NA	NA	NA	NA
WP_000504197.1\|47308_47734_+	hypothetical protein	NA	NA	NA	NA
WP_045544691.1\|47854_49705_+	hypothetical protein	A0A193GYG9	Enterobacter_phage	1.3e-08	26.1
WP_079283381.1\|49775_50801_-\|transposase	IS30-like element ISAba125 family transposase	W5R8L2	Staphylococcus_phage	2.1e-51	37.8
WP_015056391.1\|51093_51378_+	hypothetical protein	NA	NA	NA	NA
WP_015056392.1\|51588_53118_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_163050519.1\|53306_54947_-	chaperonin GroEL	A0A219YK78	uncultured_virus	2.4e-174	62.0
WP_004201172.1\|55002_55293_-	co-chaperone GroES	A0A221S322	uncultured_virus	2.1e-17	47.8

DBSCAN-SWA_2

58787 : 61942

Staphylococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079283381.1\|58787_59813_-\|transposase	IS30-like element ISAba125 family transposase	W5R8L2	Staphylococcus_phage	2.1e-51	37.8
WP_169059680.1\|59857_60169_-	hypothetical protein	NA	NA	NA	NA
WP_001046277.1\|60191_60443_-	hypothetical protein	NA	NA	NA	NA
WP_000644490.1\|60668_61109_+	hypothetical protein	NA	NA	NA	NA
WP_001067790.1\|61237_61942_+\|transposase	IS6-like element IS1008 family transposase	A0A077SL39	Escherichia_phage	5.1e-118	84.5

DBSCAN-SWA_3

73811 : 84014

Acinetobacter_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998564.1\|73811_74696_+	AAA family ATPase	A0A1X9I765	Streptococcus_phage	5.4e-08	27.0
WP_000062236.1\|74699_75578_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_001016937.1\|75645_76941_-	Y-family DNA polymerase	A0A0P0I4F0	Acinetobacter_phage	2.7e-141	59.2
WP_001077961.1\|76937_77435_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	4.8e-38	57.7
WP_001144533.1\|77623_78670_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_000271057.1\|78659_79310_-	hypothetical protein	NA	NA	NA	NA
WP_002011569.1\|79418_80699_-	hypothetical protein	A0A0N7C080	Escherichia_phage	6.6e-31	33.8
WP_002011623.1\|81100_81325_-	hypothetical protein	NA	NA	NA	NA
WP_000733607.1\|81371_81767_-	hypothetical protein	NA	NA	NA	NA
WP_000956387.1\|81780_82122_-	hypothetical protein	NA	NA	NA	NA
WP_002011509.1\|82136_84014_-	M23 family metallopeptidase	A0A1X9SFE0	Acinetobacter_phage	1.9e-34	50.8

DBSCAN-SWA_4

92517 : 96252

Shigella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000871698.1\|92517_96252_-	hypothetical protein	V5UQK6	Shigella_phage	9.3e-25	45.3

DBSCAN-SWA_5

131651 : 131984

Sphingobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001049486.1\|131651_131984_+	hypothetical protein	A0A1W6DXA8	Sphingobium_phage	1.0e-15	38.9

DBSCAN-SWA_6

135717 : 136650

Escherichia_phage(100.0%)

integrase

attL 127727:127739|attR 138600:138612

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
127727:127739	attL	NA	NA	NA	NA
WP_000886982.1\|135717_136650_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	7.5e-16	36.2
WP_000886982.1\|135717_136650_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	7.5e-16	36.2
138600:138612	attR	NA	NA	NA	NA

DBSCAN-SWA_7

142436 : 143252

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001043260.1\|142436_143252_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050417

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP050415

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP050416

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection