CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP052856	Pseudomonas sp. ADAK22 chromosome, complete genome	2 crisprs	DinG,csa3,WYL,DEDDh,cas3	1	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052856_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052856_1

298753-298854

Orphan

Consensus_repeat	Method
ATCCAAATGTGGGAGTGGGCTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052856_1

>merge|NZ_CP052856|1|298753-298854|CRISPRCasFinder
ATCCAAATGTGGGAGTGGGCTTGCCCGCTCCCACCTTTGACCGAGTACAAATGACACCCATCTATCTGATTCACAGAAATCCAAATGTGGGAGCGGGCTTGC

>NZ_CP052856|1|1|298753-298854|CRISPRCasFinder
ATCCAAATGTGGGAGTGGGCTTGC	CCGCTCCCACCTTTGACCGAGTACAAATGACACCCATCTATCTGATTCACAGAA
ATCCAAATGTGGGAGCGGGCTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052856.1\|WP_169366395.1\|289990_290464_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052856.1\|WP_106580724.1\|290587_291310_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP052856.1\|WP_169366397.1\|293982_296745_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226418
NZ_CP052856.1\|WP_169366402.1\|306480_307164_-\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239268
NZ_CP052856.1\|WP_169366403.1\|307160_308525_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP052856.1\|WP_169366392.1\|286987_287947_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP052856.1\|WP_169366398.1\|296803_297202_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP052856.1\|WP_169366250.1\|303796_303940_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240657
NZ_CP052856.1\|WP_119735444.1\|299530_300121_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225765
NZ_CP052856.1\|WP_169366400.1\|304324_305272_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|240657
NZ_CP052856.1\|WP_169366393.1\|287948_288812_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP052856.1\|WP_106580723.1\|291490_292441_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP052856.1\|WP_106580719.1\|297406_298315_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176153
NZ_CP052856.1\|WP_169366401.1\|305285_306458_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP052856.1\|WP_169366396.1\|292536_294036_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226418
NZ_CP052856.1\|WP_169366399.1\|302777_303665_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP052856.1\|WP_119735443.1\|300117_301956_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
NZ_CP052856.1\|WP_169366251.1\|304060_304204_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240625
NZ_CP052856.1\|WP_169366394.1\|288914_289913_+\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176189
NZ_CP052856.1\|WP_106580735.1\|301977_302595_+\|hydrolase	unknown	unknown	gnl\|CDD\|238494

Protein	Function_ID	Function_description	E-value
NZ_CP052856.1\|WP_106580724.1\|290587_291310_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.47409e-71
NZ_CP052856.1\|WP_169366397.1\|293982_296745_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	1.44795e-59
NZ_CP052856.1\|WP_169366402.1\|306480_307164_-\|AhpC/TSA-family-protein	gnl\|CDD\|239268	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.	3.6197e-39
NZ_CP052856.1\|WP_169366403.1\|307160_308525_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP052856.1\|WP_169366392.1\|286987_287947_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.53333e-81
NZ_CP052856.1\|WP_169366398.1\|296803_297202_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.16008e-28
NZ_CP052856.1\|WP_169366250.1\|303796_303940_-\|hypothetical-protein	gnl\|CDD\|240657	cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.43404e-06
NZ_CP052856.1\|WP_119735444.1\|299530_300121_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225765	COG3224, COG3224, Uncharacterized protein conserved in bacteria [Function unknown].	4.04684e-33
NZ_CP052856.1\|WP_169366400.1\|304324_305272_-\|dihydrofolate-reductase	gnl\|CDD\|240657	cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	8.63141e-165
NZ_CP052856.1\|WP_169366393.1\|287948_288812_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.25835e-34
NZ_CP052856.1\|WP_106580723.1\|291490_292441_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	6.77646e-92
NZ_CP052856.1\|WP_106580719.1\|297406_298315_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176153	cd08464, PBP2_DntR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.11477e-66
NZ_CP052856.1\|WP_169366401.1\|305285_306458_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.58686e-54
NZ_CP052856.1\|WP_169366396.1\|292536_294036_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	1.05616e-41
NZ_CP052856.1\|WP_169366399.1\|302777_303665_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.11729e-93
NZ_CP052856.1\|WP_119735443.1\|300117_301956_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	0
NZ_CP052856.1\|WP_169366251.1\|304060_304204_-\|hypothetical-protein	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	1.37985e-05
NZ_CP052856.1\|WP_169366394.1\|288914_289913_+\|quinone-oxidoreductase	gnl\|CDD\|176189	cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	7.31087e-136
NZ_CP052856.1\|WP_106580735.1\|301977_302595_+\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.83686e-67

>NZ_CP052856.1|WP_106580719.1|297406_298315_+|LysR-family-transcriptional-regulator
MNRNDLRRVDMNLLVIFEALMFEKNLTRVAEKLFMGQPAVSAALGRLRDLFDDPLLLRNGRGMEPTPRALAILKELQPAMDTISGAVSRAKDFDPSTSCAVFRIGLSDDAEFGLFPPLLSQLREEAPGIIVVVRRANYLLMSALLASGEISVGVSYTTELPANAKRKKLRDIPCKVLRGDDGEAPLTLDDYCERPHAMVSFSGDLSGNIDLDLARIGRARRVVLAVPQFSGLRALLAGTRIIATVPDYAACALTEGTVLRAQDPPFEIEAAELSMVWSGVHDNDPAERWLRSRISEHMSRAV
>NZ_CP052856.1|WP_169366398.1|296803_297202_-|helix-turn-helix-transcriptional-regulator
MARLEYCAPRFSTTGGLCPRRERIAKQLILANLGESLAIADLAQACALSRSHFSRAFKCTTGLSPQEWIRQQRIQRAKELITGSSLSLTQISLECGFCDQAHFCHMFTRSEGVNPMTWRNHHLRHKPQVIAA
>NZ_CP052856.1|WP_169366397.1|293982_296745_-|helix-turn-helix-transcriptional-regulator
MSDLSDQAVHFGPYCIHPRQRLVLEAGRPLRLGRRAVEILLILLEQAGNVVSKQELIARVWPKTVVEDGNLRVHMAALRKALGDGQAGQRYIVTVAQRGYSFVAPLSIEPMTIPADGLPHSQGHNLPLRRTRMIGRQALIDALVQQLPQQRFITLTGAGGIGKTTVALRVAELLIGHYRDGIRLLDLAPLSAPSMILPNLAALLDLTPQAHEPLLTFARSLHARQLLLVIDNCEHLLDDIALISETLLRHAPHVHILATSREALRAEGEYVQRLEPLACPPATGNRAQALGYPALQLLIERAMSHQDRFELSEAQLPLAIDICQRLDGIPLAIELVAAQIQRFGLPGLLVQMEDNFRLLVRGRRSALPRQQTLRATLDWSFELLTACEQICLRRLAVFRGGFSLASAAAVIAGERIAPNEVLGSITQLVAKSLLNVEAGDDDVVYRLLDITRTYALEKLSVAAELEATRERHAARCLALMEQAREDWELIATQAWISRYAPLREDIRAALDWCLGEMGAHLLGIRLTVSAMPLWQELSLLHEHGLYVGKALTRLAQSTAPSQRLQMELQLALGSFSYHAQGSTPQTIQAFAGALRLAQASNDLTGQLRAVSGHMAVNLCSGNYREALAQSLHFDQLGPQSEPLLDLSAQRLRVLAQHFAGNQALALHNAEQVIQRMAHSGHLNRFTHGFGVQYDQSVASLTMLARTLWLRGFAERAWRTANQALELALQINHGTSICYTLALAGVVIARYNGDTAAARSLLDLLLQQAQKHSVQLFHTWAQHYAGTAPQAGLQGLGLVRDTLVTFNAIDVDDEVFERARSGAAGWCSAEILRVRAEALPDLHARETLLLEALALAHQQGALAWELRSATSLASLWQSQGRRQAARDLLNALYTQFNEGFATHDLVCVRRLLDELQDKRPA
>NZ_CP052856.1|WP_169366396.1|292536_294036_+|helix-turn-helix-transcriptional-regulator
MEKDAQTPKAGCSSALTRMHNPHAVSFGPYTFHRQQRLVSKAGLPVPLGGRALDILAVLLETPGQFVRKDTLIARVWPRSVVEENNLRVHIAALRRALDGQRYILNEPLRGYCFVAPSSAASALPWHNLAVRLSPVLGRDELLGTLVRRLYSQRLIMLTGCAGVGKSTVALALAERVLPRYRDGVCWVDLAAVQGPTHMLPHLAATLNLQPCGSANALAEQLAVRQMLLVLDGADVLLGACRHLVRTLQAHAPQVTVVLTSREALQVPGEWVQHVPRLALPMPSAWRGVEQAMAAAAVQLFVARVRAGQQGFVLRAQDLAPLRDICRRLDGIPLALELAAAQVDALGIRGVHEQLQQGLQVLTRGRRTAVERHQSLIAALDWSYQRLSLPQRWLLLQLALFKMAVTLPRLSELVAGTELEHADLSYLLSRLAATSMLAVEPGPGPARYRLLNSVRSYALALLRDPAQVAQLQKGYGHYLGCSSGRPFVLQLVEQAAYTD
>NZ_CP052856.1|WP_106580723.1|291490_292441_+|GlxA-family-transcriptional-regulator
MKTVAMALFPDFLLLDMAGPLEVFSIANRYLPANAHYQILTIGTEPGLLRASNGVQVQPDLLLAQAHDAYDLLLVPGGPGAYNECHPALLPWLKAAAPRARRFGSICTGAFVLGHAGLLDGHRVTTHWHYTERLIKGFPKAIVETDRIYLQDGRLITSGGVTAGIDLALSVVAQDHGKQVAVDVAKVLLVVMKRQGGQAQFSPMTAAVAPLETAITRVQNQVLAQLDQPFTIDSMAALAGMSARHFTRLFAKEVQMTPMAFLQGARIDRARQLLETTDLPLKTVAFRAGFGSVRHMRFLFSEKLGLNPTQYRQQFS
>NZ_CP052856.1|WP_106580724.1|290587_291310_-|pirin-family-protein
MLTLRKASDRGAANHGWLKSFHTFSFANYWNPAEQGFSDLLVINDDRVAAGKGFGQHPHRDMEIFSYVLEGALEHKDTLGTGSVIRPGDVQLMSAGSGVAHSEFNHSQRQGVHFLQIWIVPNVVGAEPRYQQEHFSEAQKRGRLQLIISPEGAEGSLNVRQDARVYAGLFDGDEAATLDVPPDRHVYIHVARGSVEVNGQRLQEGDGARVRDERQINLSHGEDAEVLVFDLRPQERPQMP
>NZ_CP052856.1|WP_169366395.1|289990_290464_+|hypothetical-protein
MQTIRTAFSQTAFLQAVRTAFSQATFLQTIRAAFSQTAFLQTIRAAFSQATFLQAIRTALSQAAFLQTIRTAFSQATLLQAIRTAFSQTAFLQAIRTAFSNTTVQQTVRTAFGYGVTLQAIRATFSDNRVSKSVCSEYRESEAKQELAFHGGVLRVF
>NZ_CP052856.1|WP_169366394.1|288914_289913_+|quinone-oxidoreductase
MKAITLQAYGGPEVAQLRHDVEKPQATPGHVLVKVACAGINFMDIHTRQGKYAHSSTYPVRLPCTLGMEGAGVVIEVGPGVSHLAVGDRVAWCIAWGAYAEYANVPVEKIAQIPSAISFDQAAAAMFQGCTAHYLIDDVARLQAGSTCLVHAASGSIGQLLVQMARRLGATVLTTASTVDKCAIALQQGAHQAWTYDRFADQVRQATGGRGVDVVFDCVGKNTLRESFRACRTRGLIVNYGNVSGSLTDLDPMELGEAGSLFLTRPRLADHMADGATVQRRANAVFAAMLEGTLTVDIEGHYSLETVQQVHARIEARQQIGKAVLWVDRDLH
>NZ_CP052856.1|WP_169366393.1|287948_288812_-|LysR-family-transcriptional-regulator
MFDWQDLYYFTVLARTQSLSAAARELQVEHATVGRRVDALEKALGVKLVDRLPRSRPLTAQGLALAELAAGMGEMATDVLRLSRVASIELAGTVRVSCPPSIANHCLAPHIARLRAQYPQLNLVLIPSTQLAALDKGEADIALRTVRPDEEALVRRKVGVVRFGLYGAPGFTQLPAAQWTFIAYDSSRDHLPQQAWLHLLRGQRPIVFAASELITQQMAARAHVGAVVLPTLVGDHDPLLARLPTPGDGPVRDIWLTVYPDMRRSPSVKVVMEFLVACIEGEAQLRR
>NZ_CP052856.1|WP_169366392.1|286987_287947_+|helix-turn-helix-domain-containing-protein
MHITLLLADQCSAASATLALEMLSAANLFAERAPFEIVVASLDGQAVDAWGGQRLQVMCSAAQVLQTDLILIPGFLFTLKEALPSFPAYGPWLRQQHAQGAVLASMCTAAFLLAETGMLQGLRATTHWAFAEFFRRRYAGVVLDDTQILCEENRVITCGGASAAMDLMLHLIRRFGSPELAHTCGKYLLIDNVRTEQSVYAMWSLPKSHGDGEVLRVQHWLEQQFAQPLVIDDVARRFGFGVRNFKRRFKEATGYTPIAYVQTLRLERAKQMLESTRMTLESITYAVGYEDSNSFRRLFQQRVGMLPAAYRKKFLATAG
>NZ_CP052856.1|WP_119735444.1|299530_300121_+|antibiotic-biosynthesis-monooxygenase
MDPTPKTSPDEVVTLVVKHLIKPGREADYEAWLRRIVRIAGERPGHLGVDVVRSKQNRLALFTCVLRYRSTDDLERWLDSPERQALINEATPMLADGDNTEVGAVNEFWFAPLADSAAKPPRWKQAVVTLFVILPLTLLIPIVWGPVLRLHPFLSNYVVATFLVTLTIVLLVVYLLMPAATRLFAPWLEASVKETL
>NZ_CP052856.1|WP_119735443.1|300117_301956_+|amidohydrolase
MNADLILFNGQFHTVDRENPRATAVAIHQGRFVAVGTDAQAMALRGSGTQVIDLKGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQADRTPTPQWVRVVGGWNEFQFAEKRMPTLEELNQAAPDTPVFVLHLYDRALLNRAALRVAGYTKDTPNPPGGEIVRDSNGNPTGMLVARPNAMILYATLAKGPKLPLEYQVNSTRQFMRELNRLGLTSAIDAGGGFQNYPDDYAVIEQLAKDEQLTVRIAYNLFTQKPKEELSDFKHWTGSVTLHQGDDYLRHNGAGEMLVFSAADFEDFLEPRPDLPLTMEQELEPVVRHLVEQRWPFRLHATYNESISRMLDVFEKVNRDIPFNGLPWFFDHAETITPHNIERVRALGGGIAIQDRMAFQGEYFVERYGAKAAEATPPIKRMLAEGVPVGAGTDATRVSSYNPWTSLYWMVSGRTVGGLELHAEGLPRLTALELFTHGSAWFSSEQGKKGQIKVGQLADVAALSADFFSVDEEAIKWIESVLTVVGGKVVYGAGDFEDFAPPRVPVLPDWSPVVKVPGHWRPGSALQAQVHQCSGPCGVHAHGHEKARLSSVPVSDFQGFWGAFGCSCFAF
>NZ_CP052856.1|WP_106580735.1|301977_302595_+|hydrolase
MTYKRLNKDDAVVLLVDHQTGLISLVQDFSPNEFKNNVLALADVAKFFKLPTILTTSFETGPNGPLVPELKALFPDAPYIPRPGQINAWDNEDFVKAVKATGRKQLIIAGVVTDVCVTFPTLAALAEGFEVFVVTDASGTFNEAVQRASWARMSAAGAHLVNWFAVACELQIDWRNDMEGLANLLSPRIPNYRNLMNSYSAFTAK
>NZ_CP052856.1|WP_169366399.1|302777_303665_+|LysR-family-transcriptional-regulator
MNPFEDMRLFCQVMESGSFTAAAEQLGLSKQFVSRRLIQLEERLGVRLLNRSTRRLDVTPLGQSYYESALRLLSDVEQVEQGIAGQNSEPRGTLRLSAPLSFAMAHLGCLLPSFLQRYPHVSVEVDLSDRPVDLIGEGYDLVLRIGTLEDSTLIARRIASVERVYCASPEYLARRGTPLKPEDLADHDCLPYGHGRQVQWRFQTKGKLQSVNVSGRMRVNNGELLRDTAIAGLGVTYLPTFIVADALKHGRLVTLLEDFAPEALTLSAVYPQHRQSSRPVQALVEFLRERLAGGC
>NZ_CP052856.1|WP_169366250.1|303796_303940_-|hypothetical-protein
MSMVQQPPARRSRKNSTSASQEEIADTFLANLERYVDGSELANLVDR
>NZ_CP052856.1|WP_169366251.1|304060_304204_-|hypothetical-protein
MSVVQQPPARRSRKNSTSACQEEIADTFLANLERYVQGSTLANLVDR
>NZ_CP052856.1|WP_169366400.1|304324_305272_-|dihydrofolate-reductase
MSQVIIASQLDEDYNAVIRERLASIHPEAQVIGVPAGVPSDLPPQANILLLRPINVRGYTAPDTPPPGWPYGAQWVHLVSSGIDFYPQWLFNGPPVTTSRGSAADNLAEFALAAIFAASKHLPAIWVKDAHWNFTPLRPLKGTTLGILGFGAIGKSLAQKALALGINVVALRQSHASFDVDGVEAAGDIHDLFARADHLVLAAPLTESTRHIVNRDVLGSARPGLHLINIARGGLLDQEALLEALDNGQVGLASLDVTEPEPLPDGHPLYSHPRVRLSPHTSAISTNSQEEIADTFLANLERYVQGSTLANLVDL
>NZ_CP052856.1|WP_169366401.1|305285_306458_-|acyl-CoA/acyl-ACP-dehydrogenase
MLMTSQPSLRCVEVANFEALLERLSAELASTAHLYDASGAFPHNNFKLLHDHGLVALTVPKSLGGGGASLPQARKAISAIAKGEPSTALILVMQYLQHTRLQDSKTWPQHLRVQVAEDAVRNGALINALRVEPDLGTPARGGLPATTAVRTAEGWRISGRKIYSTGSHGLSWFSVWARSDDADPLVGAWLVRKDSPGISINDTWDHLGMRATCSHEVVLDNVLVPLDHAVSVSPWSAPQPELDGDGFLWMSVLLSSVYDAVAQAARDWLVKWLEERKPSNLGAALSTLPRFQETVGHIDTLLFANRSLLDAAAEGHTPAANAAQLKYLVTGNAIRAVELAIEASGNPGLSRHSPLQRHYRDVLCSRVHTPQNDAVLQGVGKAVFAQRGPQ
>NZ_CP052856.1|WP_169366402.1|306480_307164_-|AhpC/TSA-family-protein
MSESLNRQLAELHAERVATWAPAALQVNIDQRQRLVDEAQPDAYVQVGDALDPFTLLNVEGGELNLDLLLADGPAVLIFFRFAGCPACNIALPYYERQLYPRLREWGVPLVAVSPQVPQRLVEIKTRHDLKLLVASDPDNTLGRRLGILYSFDEASRNAALAKGSSIGETTGTGTWELPQPTVVVIAQDGTVAFVEVSPDWLVRTEAEPVLQVVERLLGQQPVRIAI
>NZ_CP052856.1|WP_169366403.1|307160_308525_-|LLM-class-flavin-dependent-oxidoreductase
MSKPGQLQPRHLKLGAMVHGVGHGWGEWRHPKAQPNASTNFGFYKQQTELAEGAKFDFVFIADSLHIHAKSSPHYLNRFEPLTILSALAALTTNIGLVATVTVSYSEPYQVARQFASLDHISGGRAGWNVVTSWLSGTADNFGKAEHPPHAVRYRIAKEHLNVVKGLWDSWEDDAFTYNKQSGEFFTPHKLHALNHRGEFFSVKGPLNIARSRQGQPAIFQAGTSEDGRNFAAQNADAIFVHVEHIEEAKAYSADLKRRAKGFGRDAHSLSILPGIRPIVGRDAAEVQSRYQQAVDLVTVEDAIVALGRPFNDHDFSQYPLDEPFPELGDLGANSQKGGSERIKQLAKDEGLTLREVALRFSRPKRDFVGTPEQVADAIQTWFETGASDGFIINSVLPDGLQYFTELVVPVLQQRGLFRTEYSGHTLRDNLGLDVPANRYSVATEVEEQQEALA

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Crispr_ID: NZ_CP052856_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052856_2

661297-661380

Orphan

Consensus_repeat	Method
GCGGGCTTGCCCGCGAATGCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052856_2

>merge|NZ_CP052856|2|661297-661380|CRISPRCasFinder
GCGGGCTTGCCCGCGAATGCAGTCTGTGAGTTTGCACCTTTGGCACTGACCCACGGCTTTCGCGGGCTTGCTCGCGAATGCAGT

>NZ_CP052856|2|2|661297-661380|CRISPRCasFinder
GCGGGCTTGCCCGCGAATGCAGT	CTGTGAGTTTGCACCTTTGGCACTGACCCACGGCTTTC
GCGGGCTTGCTCGCGAATGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052856.1\|WP_124417236.1\|657655_658954_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|236440
NZ_CP052856.1\|WP_169368644.1\|669201_671199_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052856.1\|WP_169368643.1\|667162_668992_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052856.1\|WP_106577860.1\|673803_674445_-\|DUF1345-domain-containing-protein	unknown	unknown	gnl\|CDD\|377769
NZ_CP052856.1\|WP_119741864.1\|674497_677587_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP052856.1\|WP_169366549.1\|661578_662556_-\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|185307
NZ_CP052856.1\|WP_169366545.1\|652747_655273_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NZ_CP052856.1\|WP_169366546.1\|655421_656765_+\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|236207
NZ_CP052856.1\|WP_158266159.1\|652522_652696_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052856.1\|WP_169366551.1\|663896_664838_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP052856.1\|WP_106578150.1\|671969_673733_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP052856.1\|WP_169366547.1\|656768_657659_+\|acyl-dehydratase	unknown	unknown	gnl\|CDD\|239533
NZ_CP052856.1\|WP_119741843.1\|650403_650898_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052856.1\|WP_106577847.1\|649794_650280_+\|protein-activator-of-alkane-oxidation-PraB	unknown	unknown	unknown
NZ_CP052856.1\|WP_169366548.1\|658984_660688_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235923
NZ_CP052856.1\|WP_169366550.1\|662552_663851_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP052856.1\|WP_169366553.1\|665700_666759_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380506
NZ_CP052856.1\|WP_106577849.1\|651013_652468_+\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP052856.1\|WP_169366552.1\|664830_665613_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|366542
NZ_CP052856.1\|WP_145164424.1\|649165_649660_+\|protein-activator-of-alkane-oxidation-PraA	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP052856.1\|WP_124417236.1\|657655_658954_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|236440	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase.	0
NZ_CP052856.1\|WP_119741864.1\|674497_677587_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP052856.1\|WP_106577860.1\|673803_674445_-\|DUF1345-domain-containing-protein	gnl\|CDD\|377769	pfam07077, DUF1345, Protein of unknown function (DUF1345). This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.	1.71362e-62
NZ_CP052856.1\|WP_169366549.1\|661578_662556_-\|D-glycerate-dehydrogenase	gnl\|CDD\|185307	PRK15409, PRK15409, glyoxylate/hydroxypyruvate reductase GhrB.	4.0766e-156
NZ_CP052856.1\|WP_169366545.1\|652747_655273_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_CP052856.1\|WP_169366546.1\|655421_656765_+\|3-oxoacyl-ACP-reductase	gnl\|CDD\|236207	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	0
NZ_CP052856.1\|WP_169366551.1\|663896_664838_-\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	2.39797e-104
NZ_CP052856.1\|WP_106578150.1\|671969_673733_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.96719e-73
NZ_CP052856.1\|WP_169366547.1\|656768_657659_+\|acyl-dehydratase	gnl\|CDD\|239533	cd03449, R_hydratase, (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.	1.93751e-11
NZ_CP052856.1\|WP_169366548.1\|658984_660688_+\|AMP-binding-protein	gnl\|CDD\|235923	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP052856.1\|WP_169366550.1\|662552_663851_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.08211e-89
NZ_CP052856.1\|WP_169366553.1\|665700_666759_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380506	cd06283, PBP1_RegR_EndR_KdgR-like, ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.36581e-97
NZ_CP052856.1\|WP_106577849.1\|651013_652468_+\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	3.3427e-150
NZ_CP052856.1\|WP_169366552.1\|664830_665613_-\|TIM-barrel-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	4.76053e-07

>NZ_CP052856.1|WP_169366548.1|658984_660688_+|AMP-binding-protein
MNAVSLERTERIWLNAYLPGVPADIEAGIEEYQSLREVFLEHLEKFRERVAYVSIGTEMTYADWQVQGIAFAAWLQGQGVKKGDRVALMMPNCLQYPICLLGTILAGAVVVNVNPLYTSHELKHLLKDSGAETVVIFENFAHTLEKVVAGSSVKRVVVAAIGDLLGAFKGAAMNFILRSVQKQVPAFNLPGAVRFNRVLKQGRVLNHFPVAMNLDDLAFLQYTGGTTGDAKGVMLSHRNIIANLLQAKAWVGDQLDQDQQETNVTLLPLYHIFSLTVNCLMFMCLGGRNILIANPRDVKRVQMILRKERFNGIAGVNTLFNGLLENKAFCARDFSALRMVIAGGMATHTAVAKRWKEVTGLPIIEGYGLTECSPVVSISPINIARMREMEFTGSIGVPLPSTWVRFIREDGELADTGEQGELQVRGPQVMQGYWKRPKETAEVLDAEGWLSTGDIGVMDERGYIRLVDRKKDMILVSGFNVYPNEIEDVVAMHPGVGEVAAVGVEDGVTGERVKIIVVRKDPNLTQEQILAHCREYLTGYKVPRYVEFRTSELPKTTVGKVLRRALR
>NZ_CP052856.1|WP_124417236.1|657655_658954_+|acetyl-CoA-C-acetyltransferase
MSDYSFNPAPTRRVAIIGGNRIPFARSNSVYAHDSNQDLLVAALQGLVDRYNLHGQRLGEFAAGAVIKHSRDFNLARESLLSTTLSPQTPAYDVQQACGTGLEAALLVANKIALGQIDVGIAGGCDTTSDAPIGINESLRHTLLAANRAKGMGDKLKALLKVRPSMLFKPLLPRNGEPRTGLSMGEHCEAMAKRWQIKRLAQDELTLTSHQRLDAAYTRGFFDDLISPYRGLARDNNLRADASLAKLAGLSPAYDRHNGTLTAGNSTPLTDGASVVLLASEAWAAEHGLPVLAYLRTGETAAVNFVDGTEGLLMAPAYAVPRMLKREGLSFADFDFFEIHEAFAAQVLCTLKAWEDADYCRERLGLDAPLGAIDRSKINVNGGSLGCGHPFAATGGRQLAALAKTIHDNGGGRGLISICAAGGLGVTAIVEK
>NZ_CP052856.1|WP_169366547.1|656768_657659_+|acyl-dehydratase
MDYVTQIIDPPPSRTQLLLDGVRALRKPKLDGAPLLPRECLVRSAVALSAGAIAAYGHACGFRREQGVPLSYPHVLAFPLHLMLLTRPSFPYPASGMVHLANRIHQHQRLHEGQALRLQVWCERWVAHPKGQALSIATRAYSADALVWQSDSLYLRRDVKAPVGEPWEDALTLQEDGLLRSQRWAVPADLGRRFAKVSGDFNPIHTSVIGARIFGFRRAIAHGMWTLGRALAAQQPPGGLEHAQAHCDFKLPIFLPGQVTLWNRPVTGPRREFEVRNAAGDKPHMRGLFVWNENRQ
>NZ_CP052856.1|WP_169366546.1|655421_656765_+|3-oxoacyl-ACP-reductase
MSDSYLSFVNSPWGGRLARAIGLPQPLPLQRHRSGQQGLVNPVIVAGAGRLSTQVQQIFAATDTVAATPATLRAPSTVKVQGAVFDATAVLDLQQLDELYVFFHANAKRLSQHGRVVVLGTAPEHCRDLPQAIAQRALEGLVRSLAKELRRAITVQLIYVAPGAEYALDSSLRFFLSRRSAYVSGQVVRLEKPVDGEVAVNWDKPFAGRRALVTGASRGIGLAIAQVLARDGAHVVCVDVPQAHAALQQAAASVNGSALPLDITAPDSAALLQAHVEQYGAFDVVVHNAGITRDKTIAKMTETAWRSVLAVNLEAPLQLSSALLHHQGLNPGGRIVCVSSISGIAGNLGQSNYATSKAGVIGLVHGLAPLAAAQQVTVNAVAPGFIETQMTARIPLMIREAGRRMNSMSQGGQPIDVAETIAWLAHPASGGVNGQVVRVCGQSLLGA
>NZ_CP052856.1|WP_169366545.1|652747_655273_+|acyl-CoA-dehydrogenase
MVIWLLVGVAAAIALAYRQAAAALWLGIGLIWLALGYLFNVVAGLGTSVAALLVVVPALLLTLKPLRRALLTSKALSLFRTIMPAMSDTERAAIESGTVWWDAELFSGKPNWDRLLKAAPASLSAEEQAFLDNEVETLCDIANDWETTQIWQDMSPEGWQYTKDAGFLGMIIPKQYGGKGFSHYAHSQVVMKLSTRCSAAAISVMVPNSLGPAELLLHYGTDAQRNYYLPRLARGEDIPCFALTSPYAGSDAGAIPDLGIVCKGLHEGEQVLGFKVTWDKRYITLGPIATVLGLAFRAEDPEGLLGKAGSLGITCALIPTSHPGVNSGRRHWPLNAVFQNGPTTGKDVFIPLEWVIGGRAQVGNGWRMLMECLAAGRAISLPSANVGLGKVAVRGTSAYAAMRKQFGLPIGKFEGVQAPLARMAGHLYACDAVRKVSVASLDAGEKPSVISAIAKYHVTERARIIVNDGMDIVAGKGICMGPNNFLARAYQQSPIAITVEGANIMTRCLIIFGQGLIRCHPYVFREMEAARNPDQRQALEAFDRAMFGHVSFVVANAVRAGVHSLTGGRLLSAPTKTEPALASYYRQANRLSVVLALISDVSMGVLGGALKRKESITGRLGDILSQLYILSCVLKRFEDDGRPQADLPLVHWAAQDALLRAHEALAEVLDNYPSNAAAAVVRGLSFPFGIPLRKPSDRLLAQVAEVVQAPGETRDRLLANSYIPRPEIDKLAYGELALRLLPQVELIDARLKSAVKQGLIEPMPISATAFSGWRVKARALDLISDEEDTLLGRYVEYADHGIQVDDFPQDFGLLEALQQRKQALEPSAKRRTPQSENASVN
>NZ_CP052856.1|WP_158266159.1|652522_652696_-|hypothetical-protein
MSDGVKPHYKLEKTNSNFVLKFLFNAKAKKNQAEHVSLLNQKMRCCTGRERAPASSL
>NZ_CP052856.1|WP_106577849.1|651013_652468_+|outer-membrane-protein-transport-protein
MNNKKQQVQALLGLALMGGLMVAVPVQAGGFSTPTYGAPGWGRAFGGGSLFKNDPSSAFNNPAAMAFVDHNVAQMTVDYARIKIKYKGQANDYQGNPVSNTPFNPDGTFDPALTTVNNNDGGQGGFTAWLPTGFMVMPLGDRFSFGLAQVVPQGMRTTWNEDSKLRDFAVDTKIETVGLTGSLSFKVRDDLSIGAGMIVQHSKGFVSQNIDLLAAAANSKSELGGIPFPAGLGTSLIRVKVDNTSVGWFTGVVWKPTEQDSLGLNYHAKIKNKMEGKYNIRADAFSYQLMTGPSPFGGTGTIPEVAYPGLKLMPDGANASTQLDIPATAGLDWVHQFNDRLTLGVSAVWTQWSSFKDLTLKSDGNTIVSIPYNYRDSWMYSIGGDFKATDELTLRAGVASDQTPTRNSTRDPRIPDGDRYFLSLGAGYDVKAIPGLTLDLAYSHQFVQEVNLKTKNVDRLGAASLDGKAESSGDVVAVSATYAF
>NZ_CP052856.1|WP_119741843.1|650403_650898_+|hypothetical-protein
MQSLKKTALLGSMLFTLGAVSSIAGAATFAPAGAAFTASGSIATAVKLLVFTPVPCTMTLSGQVAADGSSATITGATFTGNALCGISGPLNLPWTLVPTNATTATLSGFTEKFPYDSCLTPSVLTTQWSAADGTFSIASPHTVNATCRVTAFNFKPSPALTINP
>NZ_CP052856.1|WP_106577847.1|649794_650280_+|protein-activator-of-alkane-oxidation-PraB
MKSLKTLVCATSFALCFGAASMASAASITPDGPFTTNPGTIVVKSPSSFGAAVTCGITFSGNVSGGVASINGASLTGGGLCALPTLTNLPWVLTAATSTTGTVTNVGYKITSLPSTNCGPTPIAVAWTAASKTLSASNQSLSGNCTVVSLSVVAPTLTVNP
>NZ_CP052856.1|WP_145164424.1|649165_649660_+|protein-activator-of-alkane-oxidation-PraA
MHSPATFTAHIILAALGLIVYHQAQAARIEPAGSAFTAQGPISFSKGALISADCTIKVAGKVAADGSSVNVDKVEFDGGLKCSRVEAINLPWVLVAKDTKSGSMSKISVDVHAFGLGGKCGPSTADGTWDNATRKLEATNVPIGEDCKIKTVSITMPPTFKVVE
>NZ_CP052856.1|WP_169366549.1|661578_662556_-|D-glycerate-dehydrogenase
MKKSVVLYKKLSAPLMARLHEQADVTLIEALDEPGLAKLREALPRAQGLLGASLRLDAKLLDLAPHLEAVASVSVGVDNYDIDYLTQRGVLLSNTPDVLTETTADTGFALILATARRVVELADMVRAGQWSKNIGPSHFGTDVHGKTLGIIGMGRIGEALAQRGHFGFGMPVIYHSHSPKPLVEERFGAQYRSLVDLLKEADFVCLTLPLTAETEKLIGAQEFALMGPETIFINISRGKVVDEAALVQALQQRTIRAAGLDVFEREPLNHDSPLLRLNNVVATPHIGSATHETREAMAKCAVDNLLAALSGERPKNLVNPAAWKH
>NZ_CP052856.1|WP_169366550.1|662552_663851_-|MFS-transporter
MDTLKLATRRWWYIMPIVFITYSLAYLDRANYGFAAASGMAEDLMITPGMSSLLGALFFLGYFFFQVPGAIYAQKRSVKKLIFVSLILWGGLATLTGVVSNAYMLIAIRFMLGVVEAAVMPAMLVYLCHWFTRAERSRANTFLILGNPVTMLWMSVVSGYLVQHFSWRWMFIIEGIPAVIWAFIWWKLADEKPADAKWLSEQHKKDLESALAAEQVGIKAVKNYAEAFRSPKVIILALQFFCWSIGVYGFVLWLPSILKAGLQMDMVEAGWLSALPYLAAVIGMLAVSWGSDKLQKRKRFVWPPLLIASIAFYASYALGAEHFWWSYSLLVIAGACMYAPYGPFFAIVPEILPTNVAGGAMALINSMGALGSFGGSYLVGYLNSTTGSPGASYLLMSGALMLSVVLTIFLKPGASDRERAPMPTLGLKVKTR
>NZ_CP052856.1|WP_169366551.1|663896_664838_-|sugar-kinase
MSEIDILSFGETMAMFVAEQTGDLAQVAQFHKLIAGADSNVAIGLSRLGFNVAWLSRVGNDSLGRFVVDTLKKEGLDCQHVAVDPLHPTGFQFKSREEAGADPQVEYFRKGSAASHLSIAAISPTLLQARHLHATGIPPALSEATRELSRELMTQMRKAGHSVSFDPNLRPSLWASQAQMIAEINALAAMADWVLPGLSEGRLLTGFEDPADIAAFYLDQGAEAVAIKLGPDGAYYRTQMDQGFVAAVPVEKVVDTVGAGDGFAVGMISALLENLSFPEAVQRGNWIGSRAVQSRGDMEGLPTRSELPTRSVA
>NZ_CP052856.1|WP_169366552.1|664830_665613_-|TIM-barrel-protein
MHKYPVSISLSSYGAERVRQQGQLSFVDVLSAAGAQRIEWREELLTTEHPATLAQAAAAHGLESVYSSPLELWVAGRAQPNAELNDTLDRAQAFGARWLKVSLGYFTDTNDLQSLHALLNRHPVKLLVENDQTLHGGRIEPMQRFFTEVERLGLPVKMTFDIGNWQWQDQSALTAARLLGRHVDYLHCKAVARRQDGKLVALPPGATDLHLWEQLLKHMTQGITRAVEFPLQGDDLTEVTAQQVAALTILGQPRAENAHV
>NZ_CP052856.1|WP_169366553.1|665700_666759_-|LacI-family-DNA-binding-transcriptional-regulator
MTPFSAAQRSRVTMLDVAERAGVSKASVSRFIGDDRALLSDAIALRIEQAIRELGYRPNQMARGLKRGRTRLIGMLVADIRNPYSIAVMHGVETACRKHGYSLVVCNTDRDDEQERQHLAALRSYNIEGLIVNTLGHHLDQLLELQQEMPLVLVDRKVEPLHSDLVGLNNAAAVRIAVEHLQQQGYRDVLLVSEAADGTSSRLERQASFKAEIASRPGLTGAVLELDDALQSRLQAFLATPGPKALFCANGIAALACTRALKASGCRLFEDVGLIALDDLDWYPLVGNGITALAQPTEAIGASAFDCLLKRLRGDDAPTRTLDFLPELIIRGSTQSLVGAGLPATTVYQAKP
>NZ_CP052856.1|WP_169368643.1|667162_668992_+|hypothetical-protein
MLLSPLKVRIPAWEPMPTPAIPGDPADPVHTCELWWESDDGIRLLDRFLIGPPPPDIPAFFEREISMLNLRSRSRVARLYYTVRNVGGQSTSLPVTITIDLEPPKLIAPTDMARFVVPPEPAINAQYLTDHQPTAFYIPVYNVAAPNDRIEFFLSNSPAPPLKLADGGSLVNFSTTPPTATLNSDAFRDLNNGPGYLFYRIYDEAGNFSTLSSGLPFVLSLGLPAPSIRPPIYNDELIKRNDARVDEGGGVFVRIDSYPGWSAAARHEVIVYWDDRPTTRRLVSQLPFDVDIPWTVLRGPSPVLAAQTVPVRYEIYGLNPVPTSSKSLSVNVNLTIAGQDHPNAPALLNPTLAPVEIVGRTGTNTLVDADRGYPVRVRVRLFDTPRVGDSLSLYWNGAGPVATYAVGAADSAGSWVYFSDVPWSVISGATAAVYAVHYTTTNGFNEQRSLVTNVNTQLVPLPAPLIQHTLTNGYLTCSSQTNPVNGVPWSMLKDGVRWLITPNPALRMGDMLKFVWQGFNENNWSTINTSVVVSRSLLWEPAHTVAGAIIVLNSFDATLLPVRKYGSATGSYEVWRDGVKVGDSLPGRVRVDLTYGTGRYCSANGIVAG
>NZ_CP052856.1|WP_169368644.1|669201_671199_+|hypothetical-protein
MGVFADQVIGYTGLLTRAASKGQSTNLNIPLWDGASTDPAAMDVLTVEIAPYLDLSGLDVDAEDAYFGSSSTRFQRRLTSQPDPVPVAIPQAYRPPGVYLVRYRVLIADSGVDNFSVPQLLVVDETSPYDRPRINPPEPSLPVGLVGPLDLAYIQSQPNQTALLPIPYDAQNGLSDGDYIEMFFGSSDKPYAFAPPNPETKFRVDPAVPLTLPLPASVVAAERRGNFSLRYRLFDVAGNPSELSYSLDLADLAQAPLPTEFSAPTVVLAVPGDGLIDRADVLSGGGVRVLVPSYTNALRPTDEIVVALSSTFASIQVTVPLGTTAFPVPALFTAANMDTLYGPQTPGKNRVPVTASYVVRRGAITHPTPPLETPFDLDLSIVGPVGPVIVGPGNLNPNLLPVVVQAMRAGGTFGPDNHLEVDDVNLAARARIPLWTTPALPAASLPFTVTLNYGGRLQAQNIVTLPASGFVDFTIPFSDIRALGGPTQLASYTITSAASANPSVSVNTTVIVDSVILRMEAPRVLNNTGTLNCDTLRPINSGRLIIHIPGSDYLSAGQLINVTFVGFQNNTQTPPSVVTESRTFTVPDATAANIGWDLTFDVSSTVLFNPINANRSLLTQGSATVTFDTQYLGQTVPSLPANYRVRGFRPGTGSSNYCAGGVVPA
>NZ_CP052856.1|WP_106578150.1|671969_673733_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MNLDNARVDATAATGVGLVLLNADAVARNNSRITGGVNGVNMRMEGDLTRTNSLILDNSVVQGKSGSAILVNPPLTNSTKADIQVLNGSNLLSGNGVLLQVDNNSSANLFVDNSQLIGDVVIGAGSTGMVQLNNNASLTGQLRNVEQLDVNSNAQWVLVGDSQVNTLKMGGGNVVFGAPGQFFQLNTHNLTGNGTFKMHTNFNTGETDLLNVNGNAEGNHQLLIGASGSELATGEAIKVVHTESGGARFGLVGDTVDVGAFEYGLKQEGTDWYLDTEKKGTSTSAKAVLALANAAPAVLVGESSILRTRMGEVRFGQGKSQGLWMRGYGNKIDVAANSNGVGYSQNQTGLTIGADTALDAGDGQWTLGVMGGYSNSTLGLSRGSSGMVNSYYLGTYATWLDEESGVYVDLVGKVNKLKGQSQVNMSDGQRAKGKYTQDAVSASAEVGKNIKLDDEGLYVEPFAQLSVAAIGGANYTMDNGLKAKSDRATSAIGKVGVTLGKNVQLDSGSILQPYLRTAAARDFSPDNRVYINDQRFNNNLSGASVEVAGGMAVSLSKNLSLHAEVSHSKGKAYDMPWGATAGLQYAF
>NZ_CP052856.1|WP_106577860.1|673803_674445_-|DUF1345-domain-containing-protein
MAFLARTHPRLSSAAVLGLAVGILAPADTLISKILIGWNAGVWTYLLLMLWLATRARADDVKRIAEIEDENAGLVLFMVCIAAIASLATITVNLVGSKDLDSTARLLHYGFTGMTVVGSWLLTGVIFSVHYARLFYTWEGEEPALRFAEGLRNPNYWDFLYFSFTIGVAVQTADVGVATRGLRKVVLGQSLIGFLFNTAILGFSINIAAGLFS
>NZ_CP052856.1|WP_119741864.1|674497_677587_-|multidrug-efflux-RND-transporter-permease-subunit
MPQFFIDRPIFAWVVALFILLAGALAIPQLPVAQYPNVAPPKVEIYAVYPGASAQTLDESVVSLIEQELNGADHLLYFESQSSLGSATITATFQPGTDPEMAQVDVQNRLKAVEPRLPQAVTQQGLQVEKVSAGFLLLVTLTSSDGKLDDVALSDYLARNVMNELKRIEGVGKAQLYGAERAMRIWIDPQKLIGFNLTPADVNAAISAQNAQVSAGSIGDLPGTHTQEITAAILVKGQLSTPAEFADIVLKANPDGSTVRIGDVARVEIGSQEYQFSTRLNGKPSTAVSVQLSPGANALNTATLVRAKMDELSRYFPANVEYKIPYDTSPFVKVSITKVIYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALMGTFATMLLLGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMATEGLSPKEATRKAMGQITGAIVGITLVLVAVFLPMAFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIAKGEHHAKGGFFGWFNTRFERLTDRYEGWVAYALKRSGRYLLIYLVLLVGLGWMFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVAEQIEAHNAQEPGVGDTTMIMGFSFSGSGQNAALAFTTLKDWSKRSSDDSAAAIADRANAAFSELKDAIAYAILPPPVDGLGTSSGFEFRLQDRGGVGHAALMAARTELLAAAEKNPILANVRESALAEAPQVQLEVDRKQANALGVSFADVGNVLSSAIGSAYINDFPNQGRMQRVVVQAEGDQRSQVADLLKINVRNNAGKMVPLSAFVEAKWTQGPAQLTRYNGYPAIAISGEAAPGHSTGEAMEEIQRLVSQLPAGLGQEWTGLSLQERLSGSQAPLLLGLSLLIVFLCLAALYESWSIPTSVLLVVPLGVLGAVLAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKDLYEQGEDLIDATLKAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLAVVFVPVFFVVVMKWVRKRP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP052856_2	2.1\|661320\|38\|NZ_CP052856\|CRISPRCasFinder	661320-661357	38	NZ_CP052856.1	660784-660821	0	1.0

1. spacer 2.1|661320|38|NZ_CP052856|CRISPRCasFinder matches to position: 660784-660821, mismatch: 0, identity: 1.0

ctgtgagtttgcacctttggcactgacccacggctttc	CRISPR spacer
ctgtgagtttgcacctttggcactgacccacggctttc	Protospacer
**************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1123069 : 1194822

Pseudomonas_phage(48.08%)

tail,terminase,lysis,bacteriocin,integrase,coat,capsid

attL 1117348:1117364|attR 1178369:1178385

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1117348:1117364	attL	NA	NA	NA	NA
WP_169366749.1\|1123069_1124002_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_169366750.1\|1124172_1125180_+\|integrase	integrase	NA	NA	NA	NA
WP_145160883.1\|1125180_1126539_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-47	28.0
WP_003230743.1\|1126643_1127483_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	7.3e-63	46.4
WP_028616218.1\|1127792_1127978_+	hypothetical protein	NA	NA	NA	NA
WP_106579156.1\|1128123_1128408_+	hypothetical protein	NA	NA	NA	NA
WP_106579155.1\|1128415_1128646_-	hypothetical protein	NA	NA	NA	NA
WP_106579154.1\|1128925_1129276_-	hypothetical protein	NA	NA	NA	NA
WP_003173824.1\|1129488_1129791_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_164487941.1\|1129816_1129984_+	hypothetical protein	NA	NA	NA	NA
WP_169366751.1\|1129987_1130653_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_169366752.1\|1130728_1131772_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	9.0e-18	50.0
WP_119740293.1\|1131904_1132495_-	ABATE domain-containing protein	NA	NA	NA	NA
WP_169366753.1\|1132667_1133546_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_169366754.1\|1133655_1134720_+	nitronate monooxygenase	NA	NA	NA	NA
WP_169366755.1\|1134833_1135607_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_169366756.1\|1135607_1136288_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_169366757.1\|1136293_1137373_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-22	31.2
WP_124417531.1\|1137446_1138496_+	DNA topoisomerase IB	A0A0U2TSJ7	Niemeyer_virus	4.7e-43	35.2
WP_169366758.1\|1138620_1140255_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.5e-24	25.6
WP_119740279.1\|1140324_1141029_+	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_119740277.1\|1141171_1141525_-	lipoprotein	NA	NA	NA	NA
WP_119740275.1\|1141634_1141892_+	hypothetical protein	NA	NA	NA	NA
WP_119740272.1\|1142032_1142344_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_106579139.1\|1142340_1143036_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_017138831.1\|1143107_1143323_-	hypothetical protein	NA	NA	NA	NA
WP_106579137.1\|1143501_1143858_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	1.0e-34	64.8
WP_169366759.1\|1143877_1145161_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	7.0e-182	77.0
WP_106579135.1\|1145287_1145827_+	hypothetical protein	NA	NA	NA	NA
WP_169366760.1\|1146000_1146792_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_119740266.1\|1146864_1147476_+	LysE family transporter	NA	NA	NA	NA
WP_124417537.1\|1147792_1148101_+	hypothetical protein	NA	NA	NA	NA
WP_124417538.1\|1148336_1151051_+	magnesium-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	7.0e-38	24.3
WP_106579131.1\|1151115_1151463_+	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_169366761.1\|1151481_1152303_+	hypothetical protein	NA	NA	NA	NA
WP_169366762.1\|1152299_1152989_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_124417540.1\|1153114_1153642_+	DinB family protein	NA	NA	NA	NA
WP_169366763.1\|1153644_1154103_-	GFA family protein	NA	NA	NA	NA
WP_124417541.1\|1154285_1154567_+	hypothetical protein	NA	NA	NA	NA
WP_169366764.1\|1155417_1155627_+	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	1.8e-10	52.2
WP_169366765.1\|1155706_1156087_+	hypothetical protein	A0A2D1GNN8	Pseudomonas_phage	3.5e-28	62.6
WP_169366766.1\|1156067_1156295_-	hypothetical protein	NA	NA	NA	NA
WP_169366767.1\|1156331_1156541_-	hypothetical protein	A0A2H4J2T0	uncultured_Caudovirales_phage	2.2e-24	75.4
WP_169366768.1\|1156624_1157311_+	DUF159 family protein	A0A2H4J991	uncultured_Caudovirales_phage	6.5e-126	92.4
WP_169366769.1\|1157297_1157816_-\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.2e-63	79.7
WP_169366770.1\|1157812_1158346_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	1.8e-75	80.8
WP_169366771.1\|1158785_1159829_+	acyltransferase	NA	NA	NA	NA
WP_169366772.1\|1159856_1160060_-	hypothetical protein	NA	NA	NA	NA
WP_169366773.1\|1160052_1160376_-	hypothetical protein	A0A2D1GNF5	Pseudomonas_phage	3.3e-27	56.3
WP_169366774.1\|1160375_1161011_-	hypothetical protein	NA	NA	NA	NA
WP_169366775.1\|1161307_1161970_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	1.3e-67	57.0
WP_169366776.1\|1162319_1166237_-\|tail	phage tail protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	78.8
WP_169366777.1\|1166297_1166885_-\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	1.9e-81	79.8
WP_169368649.1\|1166938_1167289_-	hypothetical protein	NA	NA	NA	NA
WP_169366778.1\|1167309_1168209_-	hypothetical protein	NA	NA	NA	NA
WP_169366779.1\|1168310_1168571_-	hypothetical protein	A0A0S2SYE8	Pseudomonas_phage	1.2e-16	61.0
WP_169366780.1\|1168643_1169030_+	hypothetical protein	NA	NA	NA	NA
WP_169366781.1\|1169016_1169817_-	C40 family peptidase	A0A1B0VP68	Pseudomonas_phage	5.6e-137	89.1
WP_169366782.1\|1169819_1170572_-\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	5.1e-140	92.8
WP_169366783.1\|1170583_1170922_-\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	8.9e-52	82.1
WP_169366784.1\|1170921_1173981_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	3.7e-173	40.7
WP_169366785.1\|1174008_1174281_-	hypothetical protein	A0A1B0VMG9	Pseudomonas_phage	1.0e-21	57.0
WP_169366786.1\|1174328_1174709_-	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	8.8e-32	54.3
WP_010211415.1\|1174712_1175369_-\|tail	phage tail protein	A0A2H4J6K6	uncultured_Caudovirales_phage	1.3e-51	47.2
WP_169366787.1\|1175441_1175858_-	DUF4128 domain-containing protein	A0A1B0VMI0	Pseudomonas_phage	7.8e-66	91.3
WP_169366788.1\|1175857_1176052_-	hypothetical protein	A0A1B0VP65	Pseudomonas_phage	2.5e-27	87.3
WP_169366789.1\|1176048_1176633_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	3.1e-52	53.5
WP_169366790.1\|1176634_1177027_-	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	1.0e-43	66.9
WP_169366791.1\|1177029_1177407_-	hypothetical protein	A0A2H4J0N2	uncultured_Caudovirales_phage	1.1e-42	76.0
WP_169366792.1\|1177417_1177723_-	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	7.8e-23	45.5
WP_169366793.1\|1177778_1178756_-\|coat	phage coat protein	A0A2H4JIE6	uncultured_Caudovirales_phage	5.2e-153	81.8
1178369:1178385	attR	NA	NA	NA	NA
WP_047280233.1\|1178759_1179497_-	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	2.4e-81	66.7
WP_169366794.1\|1179585_1179852_-	hypothetical protein	NA	NA	NA	NA
WP_169366795.1\|1179928_1180417_-	hypothetical protein	NA	NA	NA	NA
WP_169368650.1\|1180425_1181472_-\|capsid	minor capsid protein	A0A2H4J3G9	uncultured_Caudovirales_phage	2.4e-132	70.4
WP_169366796.1\|1181455_1182916_-	DUF4055 domain-containing protein	A0A2H4J0H4	uncultured_Caudovirales_phage	8.2e-235	81.8
WP_169366797.1\|1182915_1184235_-\|terminase	terminase	A0A1B0VP58	Pseudomonas_phage	1.9e-227	87.1
WP_034097514.1\|1184209_1184686_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	3.0e-69	83.5
WP_169366798.1\|1184718_1185342_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.4e-106	87.9
WP_169366799.1\|1185652_1185844_-	hypothetical protein	NA	NA	NA	NA
WP_169366800.1\|1185892_1186237_-	hypothetical protein	A0A193GYR7	Enterobacter_phage	3.6e-08	40.5
WP_099489835.1\|1186233_1186569_-	MFS transporter	A0A088FVG2	Escherichia_phage	7.5e-19	46.4
WP_169366801.1\|1186706_1187576_-\|bacteriocin	putidacin L1 family lectin-like bacteriocin	NA	NA	NA	NA
WP_169366802.1\|1187752_1188271_-	hypothetical protein	NA	NA	NA	NA
WP_169366803.1\|1188276_1188465_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	3.2e-11	84.2
WP_169366804.1\|1188937_1189483_-	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	1.6e-66	69.6
WP_169366805.1\|1189479_1190055_-	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	8.3e-66	61.6
WP_065905515.1\|1190051_1190522_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	4.3e-52	60.9
WP_169366806.1\|1190518_1191316_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	2.6e-94	67.6
WP_169366807.1\|1191302_1192232_-	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	1.9e-51	66.0
WP_169366808.1\|1192228_1192816_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	4.7e-40	67.5
WP_169366809.1\|1192817_1193666_-	Rha family transcriptional regulator	A0A2H4J111	uncultured_Caudovirales_phage	6.3e-54	68.7
WP_017255748.1\|1193876_1194056_-	hypothetical protein	R9TPV3	Vibrio_phage	2.5e-05	49.0
WP_169366810.1\|1194165_1194822_+	helix-turn-helix domain-containing protein	K7PM82	Enterobacteria_phage	8.6e-43	49.2

DBSCAN-SWA_2

1199908 : 1212160

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169366817.1\|1199908_1200292_+	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	5.2e-24	60.0
WP_169366818.1\|1200341_1200689_-	hypothetical protein	NA	NA	NA	NA
WP_169366819.1\|1200866_1201208_+	hypothetical protein	NA	NA	NA	NA
WP_169366820.1\|1201229_1201415_+	hypothetical protein	A0A0U4KL27	Pseudomonas_phage	8.1e-07	49.2
WP_169366821.1\|1201436_1201874_+	hypothetical protein	A0A1B0VMC3	Pseudomonas_phage	8.0e-61	78.6
WP_099491213.1\|1201870_1202062_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	2.3e-20	79.4
WP_169366822.1\|1202058_1202253_+	hypothetical protein	NA	NA	NA	NA
WP_169368652.1\|1202421_1203228_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	1.4e-66	52.9
WP_169366823.1\|1203224_1204853_+	Heme peroxidase	A0A2H4J6P1	uncultured_Caudovirales_phage	7.3e-208	73.7
WP_169366824.1\|1204849_1205092_+	hypothetical protein	A0A2H4J1H1	uncultured_Caudovirales_phage	2.2e-12	56.2
WP_169366825.1\|1205088_1205559_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	4.8e-72	86.1
WP_169366826.1\|1205628_1205970_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	7.7e-11	47.4
WP_169366827.1\|1205944_1206286_-	hypothetical protein	NA	NA	NA	NA
WP_169366828.1\|1206284_1206917_+	hypothetical protein	A0A2H4JC30	uncultured_Caudovirales_phage	8.9e-45	46.4
WP_159955674.1\|1206923_1207136_-	hypothetical protein	NA	NA	NA	NA
WP_169366254.1\|1207257_1207509_-	hypothetical protein	NA	NA	NA	NA
WP_169366255.1\|1207617_1208007_+	hypothetical protein	A0A2H4J2C6	uncultured_Caudovirales_phage	1.7e-30	47.7
WP_169366829.1\|1208033_1208366_-	hypothetical protein	NA	NA	NA	NA
WP_169366830.1\|1208530_1209829_+	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	1.9e-102	50.5
WP_046068898.1\|1210148_1210460_+	DUF4406 domain-containing protein	A0A2K8I958	Pseudomonas_phage	1.4e-19	50.0
WP_169366831.1\|1210456_1211059_+	hypothetical protein	NA	NA	NA	NA
WP_169366832.1\|1211142_1211454_+	hypothetical protein	NA	NA	NA	NA
WP_169366833.1\|1211458_1212160_+	hypothetical protein	A0A2H4IY33	uncultured_phage	1.5e-64	50.4

DBSCAN-SWA_3

1708711 : 1775361

uncultured_Caudovirales_phage(35.29%)

protease,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106579845.1\|1708711_1709536_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	4.5e-105	71.2
WP_106579846.1\|1709896_1710499_+	YIP1 family protein	NA	NA	NA	NA
WP_064454959.1\|1710627_1711122_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_169367052.1\|1711213_1712395_-	CoA transferase	NA	NA	NA	NA
WP_106579848.1\|1712552_1712945_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.9e-56	83.1
WP_106579849.1\|1712946_1713297_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.6e-42	72.5
WP_106579850.1\|1713296_1713575_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.5e-25	59.6
WP_106579851.1\|1713571_1713907_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	7.2e-46	79.3
WP_169367053.1\|1713903_1714905_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.1e-169	86.3
WP_169367054.1\|1714993_1715989_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_169367055.1\|1716179_1717574_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_106579855.1\|1717574_1718855_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.4e-97	52.7
WP_034098661.1\|1718870_1719245_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.3e-08	38.2
WP_106579856.1\|1719244_1720567_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	8.3e-77	39.0
WP_106579857.1\|1720594_1721218_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_106579858.1\|1721272_1723681_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	7.7e-89	51.9
WP_169367056.1\|1724179_1724860_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_106579860.1\|1724916_1725624_+	arginyltransferase	NA	NA	NA	NA
WP_002553999.1\|1725724_1725943_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_106579861.1\|1726182_1728453_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.3e-165	42.8
WP_005789091.1\|1728482_1728851_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	8.3e-11	42.0
WP_119736261.1\|1729074_1729386_+	cold shock domain-containing protein CspD	Q9AZD3	Lactococcus_phage	3.1e-11	54.5
WP_028616796.1\|1729464_1730721_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.7e-15	75.9
WP_169367057.1\|1731214_1733440_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_124417848.1\|1733660_1734107_+	NUDIX hydrolase	NA	NA	NA	NA
WP_106579866.1\|1734166_1735291_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_046068637.1\|1735287_1735911_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_119736269.1\|1736035_1737406_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.6e-110	47.5
WP_124417851.1\|1737490_1738657_+	cupin domain-containing protein	NA	NA	NA	NA
WP_106579869.1\|1738649_1739072_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_169367058.1\|1739302_1740040_+	secretin	NA	NA	NA	NA
WP_003219577.1\|1740533_1741859_+	isocitrate lyase	NA	NA	NA	NA
WP_003219575.1\|1742516_1742930_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_003174719.1\|1742940_1743615_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_106579871.1\|1743687_1745472_+	NADH-quinone oxidoreductase subunit C/D	NA	NA	NA	NA
WP_056861694.1\|1745474_1745972_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_106579872.1\|1745968_1747327_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_169367059.1\|1747461_1750176_+	NADH-quinone oxidoreductase subunit NuoG	NA	NA	NA	NA
WP_169367060.1\|1750172_1751180_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_003174725.1\|1751191_1751740_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_017137519.1\|1751749_1752253_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_003219560.1\|1752255_1752564_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_106579874.1\|1752560_1754414_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_106579875.1\|1754463_1755996_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_106579876.1\|1756003_1757467_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_119736285.1\|1759488_1760148_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_169367061.1\|1760157_1763721_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_169367062.1\|1763723_1765010_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_169367063.1\|1765025_1766357_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_169367064.1\|1766449_1767874_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_169367065.1\|1767892_1769854_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.8e-48	30.5
WP_169367066.1\|1769859_1772493_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.8e-83	31.0
WP_124417864.1\|1772485_1773520_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_169367067.1\|1773483_1775361_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_4

1884138 : 1953732

Escherichia_phage(18.18%)

protease,coat,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169367115.1\|1884138_1885527_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	5.7e-44	31.0
WP_106578796.1\|1885569_1887270_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	3.2e-206	61.9
WP_106578797.1\|1887520_1888024_+	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	3.3e-10	33.3
WP_119739833.1\|1888020_1888770_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_106578799.1\|1888924_1890454_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_106578800.1\|1890453_1891677_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_119739829.1\|1891692_1893144_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_106578802.1\|1893140_1893614_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_169367116.1\|1893850_1897540_-	translocation/assembly module TamB	NA	NA	NA	NA
WP_169367117.1\|1897536_1899264_-	outer membrane protein assembly factor	NA	NA	NA	NA
WP_169367118.1\|1899328_1899979_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_106578806.1\|1900147_1900960_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_119739825.1\|1901159_1902485_+	OmpA family protein	NA	NA	NA	NA
WP_106578808.1\|1902632_1903862_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_017136514.1\|1904028_1904964_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_106578810.1\|1905241_1905634_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_106578958.1\|1905650_1906550_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	2.4e-43	38.2
WP_169367119.1\|1907223_1908861_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.8e-31	26.2
WP_106578812.1\|1909024_1910188_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_169367120.1\|1910198_1911806_+	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	5.6e-19	56.5
WP_106578814.1\|1911821_1912628_+	gamma-carboxygeranoyl-CoA hydratase	NA	NA	NA	NA
WP_169367121.1\|1912624_1914550_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_169367122.1\|1914546_1915182_-	helix-turn-helix domain-containing protein	A0A0N7BTS4	Escherichia_phage	4.9e-27	37.5
WP_106578817.1\|1915312_1915663_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_169367123.1\|1916127_1917279_+	carboxypeptidase family protein	NA	NA	NA	NA
WP_106578819.1\|1917297_1917837_-	cytochrome b	NA	NA	NA	NA
WP_106578820.1\|1917833_1918916_-	catalase family peroxidase	NA	NA	NA	NA
WP_106578821.1\|1919084_1919591_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_169367124.1\|1919587_1920325_+	anti-sigma factor	NA	NA	NA	NA
WP_169367125.1\|1920321_1921317_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_119739804.1\|1921327_1923721_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_169367126.1\|1923762_1924548_-	molecular chaperone	NA	NA	NA	NA
WP_106578960.1\|1924575_1925028_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_106578825.1\|1925081_1925615_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_106578826.1\|1925633_1926176_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_164487989.1\|1926169_1926670_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_169367127.1\|1926885_1927980_+	cell division protein ZapE	NA	NA	NA	NA
WP_169367128.1\|1928020_1929325_+	protein kinase	S4VR00	Pandoravirus	1.6e-08	26.0
WP_090402660.1\|1929448_1930156_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_106578830.1\|1930255_1931113_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_169367129.1\|1931221_1932331_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_119739791.1\|1932360_1933188_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_106578833.1\|1933301_1933895_+	cytochrome b	NA	NA	NA	NA
WP_169367130.1\|1934092_1934983_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_169367131.1\|1935040_1937080_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_169367132.1\|1937292_1938423_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_106578837.1\|1938427_1939462_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_169367133.1\|1939788_1940790_+	pyruvate dehydrogenase	NA	NA	NA	NA
WP_106578839.1\|1940916_1941387_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_169367134.1\|1941532_1944193_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_169367135.1\|1944194_1945001_-	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_169367136.1\|1945090_1945990_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_169367137.1\|1946107_1947283_+	MFS transporter	NA	NA	NA	NA
WP_169367138.1\|1947334_1949209_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_003174819.1\|1949441_1949714_-	HU family DNA-binding protein	A3E2K9	Sodalis_phage	1.8e-18	59.6
WP_119739770.1\|1949862_1952259_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.9e-220	51.8
WP_017136464.1\|1952448_1953732_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-138	59.7

DBSCAN-SWA_5

3802387 : 3851738

Tupanvirus(20.0%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106575574.1\|3802387_3802903_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_169367748.1\|3803073_3803961_+	acyltransferase	NA	NA	NA	NA
WP_106575576.1\|3803957_3804530_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_106575577.1\|3804681_3805308_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_169367749.1\|3805304_3805982_+	anti-sigma factor	NA	NA	NA	NA
WP_034116135.1\|3806189_3807389_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	29.7
WP_032883972.1\|3807573_3808431_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_106575580.1\|3808601_3809234_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_169367750.1\|3809357_3812375_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_074847785.1\|3812371_3812674_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_010207084.1\|3812689_3813940_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_124418618.1\|3813962_3815216_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.2e-98	52.5
WP_169367751.1\|3815856_3816585_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_169367752.1\|3816675_3817728_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_119737577.1\|3817853_3818954_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_106575586.1\|3819237_3820533_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_124418621.1\|3821398_3822169_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_169367753.1\|3822179_3823400_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_169367754.1\|3823399_3825343_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_119737562.1\|3825500_3827561_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_106575592.1\|3827577_3828108_-	hydrocarbon binding protein	NA	NA	NA	NA
WP_119737560.1\|3828185_3829163_-	membrane dipeptidase	NA	NA	NA	NA
WP_119737558.1\|3829381_3829783_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_119737556.1\|3829823_3830306_+	hypothetical protein	NA	NA	NA	NA
WP_106575595.1\|3830342_3830759_+	DUF3010 family protein	NA	NA	NA	NA
WP_106575596.1\|3830883_3832050_-	hypothetical protein	NA	NA	NA	NA
WP_106575597.1\|3832118_3833063_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_106575598.1\|3833257_3834202_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_119737554.1\|3834279_3835167_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_119737551.1\|3835331_3836297_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_169367755.1\|3836415_3836895_+	thioesterase	NA	NA	NA	NA
WP_169367756.1\|3836904_3838065_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_106575603.1\|3838442_3838706_+	hypothetical protein	NA	NA	NA	NA
WP_005792167.1\|3838801_3839905_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_106575604.1\|3840404_3841781_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_106575605.1\|3842195_3843143_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_076017809.1\|3843209_3844055_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_106575606.1\|3844051_3845230_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-25	37.1
WP_119737537.1\|3845396_3847388_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	5.3e-19	27.1
WP_169367757.1\|3847722_3848316_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_106575609.1\|3848426_3849899_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_119737535.1\|3850034_3851738_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.0e-51	30.7

DBSCAN-SWA_6

5214458 : 5225021

Pseudomonas_phage(100.0%)

tail,integrase

attL 5218319:5218333|attR 5229357:5229371

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169368153.1\|5214458_5214881_-	hypothetical protein	A0A1B0VMK5	Pseudomonas_phage	2.1e-58	85.0
WP_169368154.1\|5214929_5215532_-\|tail	tail assembly protein	A0A1B0VMK7	Pseudomonas_phage	5.6e-89	84.0
WP_169368155.1\|5215544_5215925_-	hypothetical protein	A0A1B0VML3	Pseudomonas_phage	1.2e-44	67.5
WP_169368156.1\|5216029_5216635_-	hypothetical protein	A0A1B0VMK2	Pseudomonas_phage	5.1e-58	56.7
WP_169368157.1\|5216942_5217305_-	hypothetical protein	NA	NA	NA	NA
WP_169368158.1\|5217301_5219095_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	0.0e+00	92.0
5218319:5218333	attL	NA	NA	NA	NA
WP_169368159.1\|5219081_5219963_-	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	7.5e-143	89.8
WP_169368160.1\|5219959_5220187_-	hypothetical protein	A0A1B0VRK9	Pseudomonas_phage	2.9e-30	86.7
WP_169368161.1\|5220179_5220467_-	hypothetical protein	A0A1B0VMJ4	Pseudomonas_phage	4.0e-37	83.3
WP_024072872.1\|5220473_5220806_-	hypothetical protein	NA	NA	NA	NA
WP_169368162.1\|5220802_5221066_-	hypothetical protein	A0A1B0VMJ2	Pseudomonas_phage	1.8e-23	72.3
WP_169368163.1\|5221541_5222015_-	hypothetical protein	A0A1B0VMK9	Pseudomonas_phage	5.2e-66	81.4
WP_169368164.1\|5222011_5222311_-	hypothetical protein	NA	NA	NA	NA
WP_169368165.1\|5222310_5222562_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_169368166.1\|5222732_5223602_-	hypothetical protein	NA	NA	NA	NA
WP_169368167.1\|5223779_5225021_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	1.1e-65	38.7
5229357:5229371	attR	NA	NA	NA	NA

DBSCAN-SWA_7

5691228 : 5785045

uncultured_Caudovirales_phage(26.67%)

tail,lysis,tRNA,plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_124416540.1\|5691228_5691699_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_124416541.1\|5691848_5692958_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.2e-20	37.7
WP_169368310.1\|5692954_5693875_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	4.6e-18	28.3
WP_169368311.1\|5694298_5696407_+	molybdopterin oxidoreductase family protein	NA	NA	NA	NA
WP_106577269.1\|5696493_5696832_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_106577268.1\|5696934_5697405_-	bacterioferritin	NA	NA	NA	NA
WP_078047118.1\|5697604_5697823_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_057724790.1\|5698064_5698667_+	peroxiredoxin	NA	NA	NA	NA
WP_017137041.1\|5698986_5699658_-	ribonuclease T	NA	NA	NA	NA
WP_106577267.1\|5699654_5700701_-	dihydroorotase	NA	NA	NA	NA
WP_169368312.1\|5700857_5701766_+	OmpA family protein	NA	NA	NA	NA
WP_017738284.1\|5701895_5703113_+	argininosuccinate synthase	NA	NA	NA	NA
WP_106577265.1\|5703744_5704377_+	response regulator transcription factor	NA	NA	NA	NA
WP_106577264.1\|5704446_5704629_-	hypothetical protein	NA	NA	NA	NA
WP_119738619.1\|5704736_5705375_-	endonuclease III	NA	NA	NA	NA
WP_169368313.1\|5705473_5706637_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_169368314.1\|5706876_5708928_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_169368315.1\|5709100_5710195_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_003208688.1\|5710693_5711017_-	ferredoxin family protein	NA	NA	NA	NA
WP_169368316.1\|5711159_5713751_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	5.6e-29	21.9
WP_169368317.1\|5714126_5714408_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_169368318.1\|5715178_5716801_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.8e-24	32.1
WP_119738633.1\|5717178_5717913_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	6.3e-119	87.7
WP_169366257.1\|5718007_5718220_+	hypothetical protein	NA	NA	NA	NA
WP_106577252.1\|5718509_5718848_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	6.2e-45	81.8
WP_169368319.1\|5718871_5719387_+	hypothetical protein	NA	NA	NA	NA
WP_124416550.1\|5719390_5720002_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	5.0e-45	52.3
WP_106577249.1\|5720011_5720344_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.4e-36	68.2
WP_169368320.1\|5720340_5721336_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	3.9e-111	62.9
WP_169368321.1\|5721332_5721965_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	9.8e-44	53.2
WP_169368322.1\|5721967_5724346_+\|tail	phage tail protein	A4PE45	Ralstonia_virus	1.2e-70	49.0
WP_169368323.1\|5724366_5724912_+\|tail	phage tail protein	NA	NA	NA	NA
WP_169368324.1\|5725005_5725185_+	hypothetical protein	NA	NA	NA	NA
WP_119738652.1\|5725187_5726354_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	4.7e-124	56.7
WP_169368325.1\|5726353_5726860_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	2.6e-23	35.1
WP_119738657.1\|5727042_5727615_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	6.2e-29	39.5
WP_169368326.1\|5727743_5729957_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_119738661.1\|5729956_5730340_+\|tail	phage tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	1.8e-32	55.1
WP_169368327.1\|5730332_5730545_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	1.7e-16	60.0
WP_106577238.1\|5730554_5731562_+\|tail	phage tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	5.3e-100	54.5
WP_169368328.1\|5731568_5732126_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	1.6e-74	73.8
WP_169368329.1\|5732113_5732593_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	1.1e-39	58.7
WP_106577235.1\|5732674_5733175_+	CinA family protein	B5TK85	Pseudomonas_phage	2.0e-71	84.3
WP_003189042.1\|5733258_5734317_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4
WP_169368330.1\|5734325_5734793_+	recombination regulator RecX	NA	NA	NA	NA
WP_106577234.1\|5734989_5736102_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_106577233.1\|5736480_5736921_-	hypothetical protein	NA	NA	NA	NA
WP_124416582.1\|5737119_5737839_+	DTW domain-containing protein	NA	NA	NA	NA
WP_106577231.1\|5738091_5738742_+	response regulator transcription factor	NA	NA	NA	NA
WP_094949927.1\|5738817_5739180_+	diacylglycerol kinase	NA	NA	NA	NA
WP_169368331.1\|5739184_5740111_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003189055.1\|5740235_5741015_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_106577230.1\|5741146_5741842_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_034118394.1\|5741911_5742373_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.5e-38	52.0
WP_106577229.1\|5742442_5743153_-	RNA-binding protein	NA	NA	NA	NA
WP_106577228.1\|5743365_5743833_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_106577227.1\|5743929_5745270_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_106577226.1\|5745559_5747461_+	potassium transporter Kup	A7K9V6	Acanthocystis_turfacea_chlorella_virus	5.9e-76	33.4
WP_106577225.1\|5747587_5748694_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_106577224.1\|5748996_5749182_+	hypothetical protein	NA	NA	NA	NA
WP_124416585.1\|5749232_5750858_-	glucan biosynthesis protein D	NA	NA	NA	NA
WP_169368332.1\|5751215_5753078_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_169368333.1\|5753218_5754643_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_106577220.1\|5754812_5755622_-	ABC transporter permease	NA	NA	NA	NA
WP_119738680.1\|5755611_5756541_-	ABC transporter permease	NA	NA	NA	NA
WP_169368334.1\|5756542_5757577_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-26	33.0
WP_119738685.1\|5757776_5758928_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_119738687.1\|5759000_5760488_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_003209548.1\|5760591_5761503_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_119738689.1\|5761671_5762379_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_119738691.1\|5762596_5764219_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_106577213.1\|5764218_5764731_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_169368335.1\|5764727_5765987_+	chemotaxis protein CheR	NA	NA	NA	NA
WP_124416593.1\|5765983_5766685_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_169368336.1\|5766681_5768961_+	hybrid sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	9.7e-09	27.4
WP_106577209.1\|5768957_5769968_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_106577208.1\|5770019_5771021_+	PleD family two-component system response regulator	A0A127AWB9	Bacillus_phage	9.5e-17	35.2
WP_096236834.1\|5771257_5772352_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	2.0e-07	46.6
WP_119738697.1\|5772448_5773951_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	3.2e-85	39.6
WP_106577206.1\|5774103_5774820_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_106577205.1\|5774948_5775509_+	hypothetical protein	NA	NA	NA	NA
WP_106577204.1\|5775530_5776808_+	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA
WP_119738702.1\|5776919_5777825_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	7.8e-10	36.4
WP_106577202.1\|5777821_5778148_+	hypothetical protein	NA	NA	NA	NA
WP_169368723.1\|5778312_5778567_+	hypothetical protein	NA	NA	NA	NA
WP_106577200.1\|5778617_5779403_-	OmpA family protein	NA	NA	NA	NA
WP_106577199.1\|5779457_5779883_-	DUF4398 domain-containing protein	NA	NA	NA	NA
WP_119738704.1\|5780165_5780510_-	pilin assembly protein	NA	NA	NA	NA
WP_169368337.1\|5780694_5783340_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_169368339.1\|5783620_5784268_+	adenylate kinase	A0A2K9L833	Tupanvirus	1.1e-10	32.5
WP_106577195.1\|5784358_5785045_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA

DBSCAN-SWA_8

5846980 : 5851967

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_119738771.1\|5846980_5847730_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.1e-65	51.0
WP_003189211.1\|5847729_5848407_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
WP_106577148.1\|5848616_5849453_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
WP_016974430.1\|5849559_5850570_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
WP_002554837.1\|5850801_5851011_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_106577147.1\|5851400_5851967_+	dCTP deaminase	S5VM63	Pseudomonas_phage	4.8e-74	73.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP052856

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection