CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP052861	Pseudomonas sp. ADAK7 chromosome, complete genome	5 crisprs	csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	3	0	6	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052861_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052861_1

1200064-1200164

Orphan

Consensus_repeat	Method
TGTAGCAGCTGCCGACGCACGAGGC	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP052861_1

>merge|NZ_CP052861|1|1200064-1200164|CRISPRCasFinder
TGTAGCAGCTGCCGACGCACGAGGCGCGTTCGATGCGTGTAGCAGCTGCCGAGGCACGAGGCTGCGTTCGGCTGCGTGTAGCAGCTGCCGAGGCACGAGGC

>NZ_CP052861|1|1|1200064-1200164|CRISPRCasFinder
TGTAGCAGCTGCCGACGCACGAGGC	GCGTTCGATGCGTGTAGCAGCTGCCGAGGCACGAGGCTGCGTTCGGCTGCG
TGTAGCAGCTGCCGAGGCACGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052861.1\|WP_169369871.1\|1193608_1195057_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP052861.1\|WP_169369867.1\|1189168_1190221_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381306
NZ_CP052861.1\|WP_169369875.1\|1200957_1202010_-\|2,5-dihydroxypyridine-5,6-dioxygenase	unknown	unknown	unknown
NZ_CP052861.1\|WP_169369882.1\|1208710_1209184_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214812
NZ_CP052861.1\|WP_169369879.1\|1205057_1205690_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238497
NZ_CP052861.1\|WP_169369883.1\|1209236_1209788_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP052861.1\|WP_169369870.1\|1192520_1193414_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP052861.1\|WP_123410416.1\|1200310_1200793_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP052861.1\|WP_169369877.1\|1203467_1204274_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP052861.1\|WP_169369878.1\|1204292_1205045_+\|Asp/Glu-racemase	unknown	unknown	gnl\|CDD\|226004
NZ_CP052861.1\|WP_169369876.1\|1202322_1203471_+\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|181262
NZ_CP052861.1\|WP_149661587.1\|1187867_1188209_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP052861.1\|WP_169369874.1\|1199407_1199884_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP052861.1\|WP_169369866.1\|1188261_1188978_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP052861.1\|WP_169369873.1\|1195830_1199397_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224446
NZ_CP052861.1\|WP_169369881.1\|1207503_1208583_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|224868
NZ_CP052861.1\|WP_169369872.1\|1195110_1195767_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
NZ_CP052861.1\|WP_169369880.1\|1206094_1207405_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP052861.1\|WP_169369868.1\|1190354_1191314_-\|agmatinase	unknown	unknown	gnl\|CDD\|235011
NZ_CP052861.1\|WP_169369869.1\|1191327_1192419_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377

Protein	Function_ID	Function_description	E-value
NZ_CP052861.1\|WP_169369871.1\|1193608_1195057_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.73379e-141
NZ_CP052861.1\|WP_169369867.1\|1189168_1190221_+\|aldo/keto-reductase	gnl\|CDD\|381306	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR). The AKR9A family includes Aspergillus nidulans sterigmatocystin biosynthesis dehydrogenase StcV, Aspergillus flavus norsolorinic acid reductase (NOR), and Phanerochaete chrysosporium aryl-alcohol dehydrogenase [NADP(+)] (AAD), are founding members of aldo-keto reductase family 9 member A1-3 (AKR9A1-3), respectively. StcV may be involved in the dehydration of 5'-hydroxyaverantin to form averufin. NOR is involved in aflatoxin biosynthesis. AAD (EC1.1.1.91) is involved in lignin degradation and reduces aromatic benzaldehydes to their respective alcohols in the presence of NADP(H). The AKR9B family includes Saccharomyces cerevisiae aryl-alcohol dehydrogenases AAD14p, AAD3p, AAD4p, and AAD10p, which are founding members of aldo-keto reductase family 9 member B1-4 (AKR9B1-4), respectively.	3.2272e-159
NZ_CP052861.1\|WP_169369877.1\|1203467_1204274_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.73707e-26
NZ_CP052861.1\|WP_169369882.1\|1208710_1209184_+\|hypothetical-protein	gnl\|CDD\|214812	smart00769, WHy, Water Stress and Hypersensitive response.	2.3176e-30
NZ_CP052861.1\|WP_169369879.1\|1205057_1205690_+\|isochorismatase-family-protein	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	4.25162e-93
NZ_CP052861.1\|WP_169369870.1\|1192520_1193414_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.64643e-38
NZ_CP052861.1\|WP_123410416.1\|1200310_1200793_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	9.13243e-17
NZ_CP052861.1\|WP_169369883.1\|1209236_1209788_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.55566e-32
NZ_CP052861.1\|WP_169369878.1\|1204292_1205045_+\|Asp/Glu-racemase	gnl\|CDD\|226004	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism].	1.06162e-84
NZ_CP052861.1\|WP_169369876.1\|1202322_1203471_+\|NAD(P)-binding-protein	gnl\|CDD\|181262	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase.	4.07482e-78
NZ_CP052861.1\|WP_149661587.1\|1187867_1188209_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	4.5865e-09
NZ_CP052861.1\|WP_169369874.1\|1199407_1199884_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	3.13368e-65
NZ_CP052861.1\|WP_169369866.1\|1188261_1188978_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	4.08685e-60
NZ_CP052861.1\|WP_169369873.1\|1195830_1199397_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	8.93167e-77
NZ_CP052861.1\|WP_169369881.1\|1207503_1208583_+\|nucleoside-hydrolase	gnl\|CDD\|224868	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism].	1.22741e-70
NZ_CP052861.1\|WP_169369872.1\|1195110_1195767_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	3.73973e-49
NZ_CP052861.1\|WP_169369880.1\|1206094_1207405_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.9932e-99
NZ_CP052861.1\|WP_169369868.1\|1190354_1191314_-\|agmatinase	gnl\|CDD\|235011	PRK02190, PRK02190, agmatinase; Provisional.	0
NZ_CP052861.1\|WP_169369869.1\|1191327_1192419_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.24686e-147

>NZ_CP052861.1|WP_169369874.1|1199407_1199884_-|(2Fe-2S)-binding-protein
MTSQEITVALEVNGLTTTVTAMADTPLLLILRNDLHLNGPKYGCGLGECGACTVIIDGVAARSCVFPLAGAVDRQIVTLEGLGTRAEPHPVQQAFIDEQAAQCGYCLNGMIMTTKALLDRIPHPSESQIRNELSANLCRCGTHIEILRAVLRAARQMP
>NZ_CP052861.1|WP_169369873.1|1195830_1199397_-|molybdopterin-dependent-oxidoreductase
MTMTDAIPPSIPTRDQLLAKTGVLLIVDDILPPSGPVAKGGTPLIKPKELGLFIAISDDGRVYAFNGHVDLGTGIRTSLAQIVAEELDLQMEQVCMVLGDTERAPNQGATIASATLQISAIPLRNAAAEARRYLLETAAERWSLDAGSLNIEAGVIRAEDGRTATYAELVHGEHVELRISGTAPLKPAEEYRLVGKGSARVDIPGKATGELTYVHDMRVPDMLHGRVIRPPYAGLDCGDFVGNSLLKVDESSIAHIAGIVAVVVIRDFVGIVALREEQAIKAAQSLKVTWKTWNQGLPDLSDVEQAIRDNPRVQRVVLDQGNVDEALANASQRMPRTYLWPYQMHGSIGPSCGVADYQPSGSRVWSGSQNPHLLRADLAWLLECEEESIEIIRMEASGCYGRNCADDVCADALLLSRAVGKPVRVQLTREQEHLWEPKGTAQLMDVDGGLNADGSVAAYDFQTSYPSNGAPTLALLLTGRVEPVAAMFEMGDRTSIPPYDFENMRVTINDMAPIVRASWMRGVSALPNTFAHESYIDELAFAAGVDPVEYRLRYLHDERAIDLVKSTAERAAWTPRTAPMQTPNEDQLLRGRGFAYARYIHSKFPGFGAAWAAWVADVAIDRQTGDVSVTRVVIGHDSGMMINPAGVQHQIHGNVIQSTSRVLKERVTFEESTVASKEWGGYPILTFPEVPQIDVLMMPRQDQPPMGAGESASVPSAAAIANAIYDATGIRFRELPITPERVLAALNAGTCDEPPKSPTKRSKWLFGSLFAAFGAVLGMAATAWPFHAEIAPIAPPSAGTWSAATLERGRLLAAVGDCAVCHTAPGSATNAGGLAMETPFGTLYSSNITPDVKTGIGSWSYPAFERAMRDGIGRDGRNLYPAFPYTAFRNINDADMQALYAYLMSQTPVSQPAKANDMRFPFNLRPLMAGWNALFLRKGEISVQPQRSEQWNRGNYLVNGLGHCAACHSPRNLMGAEKGGASFLAGGMVDGWEAPALNGLSKAPTPWTEDQLFGYLSSGYSAEHGVATGPMGPVVTELAKLPKDDIRAMAVYLASLNGAQAEAQVVEKATRPVVTVSLSNGQRVFEGSCKACHADGLGPKLFGVSPSLATNTNVHSDLPDNLIKVILQGIDTPATKDLGYMPAFKDSLSNTQVAELAAYLRNRFAGNAPGWEGLESKVAHLRANPGSH
>NZ_CP052861.1|WP_169369872.1|1195110_1195767_+|TetR-family-transcriptional-regulator
MNKKTGIRAAQAQQTRTRILEAAVKVFTRDGYSGGRVESISREAESNDRMLYYYFGSKEQLFICVLEHTYEQFNKAESRLKLDLSQPLVALQDLVAFVWHYYVKHPEFVAILSNENLHGGKHAQQSSELRRLSGEAVGVLKPIIEAGQAQGLFREVLDIKHVYLMIASLCYFYNSNRHTLSSFLGEDLADKGQQQDWLGFIQDLVVRGVMRLPGQDLR
>NZ_CP052861.1|WP_169369871.1|1193608_1195057_+|purine-permease
MTSSEHAKSQPRSDLIYGLNDRPHLTATVFAALQHVLASFVGIITPTLIMGGALGLQSEIPYLISMALFVSGLGTFVQARRFGPVGSGLLCLQGTSFSFISVILSAGFMVKARGGGTDEILSTIFGVCFFAAFIEVVLSQFIGKLRMLITPVVTGTIITLMGLSLIKVAMTDIAGGFGVADLGASHHLALAALVLGTIVVLNRVDVPFLRLGAIVIGLTLGYVVAWLMGDVDFASLPAVPLVSVPVPFKYGFNFDWVAFVPVAVIFLVSPLEAAGDLTANSMISRQPVKGPIYIRRIKSGLLADGLNSAMAAVFNSMPMVTFAQNNGVIQLTGVASRYVAFFIAGLLVLLGLFPMIGAVLQLMPKPVLGGAELVMFGTVAVAGIKILAEAGLHRRNMLIVSISLGMGLGIAAVPEVLRELPLALHNIFESPITVGALCAIILNVFLPEEFMALEEDDFDPEASILQVMENPQATESASSLNR
>NZ_CP052861.1|WP_169369870.1|1192520_1193414_+|LysR-family-transcriptional-regulator
MLGQLHDLDLQLLRLFVSVVECGGFSAAQGELGLSQSSISQQMARLETRLGYRLCSRGKGGFRVTPKGEQLLIAIRGLFESIEAFRHQSNGVAGRLIGEVRLGLSEALDQSVLQRVAEAIRRFRERDESVRIELISAMPGEMERLMLQQRLDLAIGYFSQVQSAFDYRELFSETQHLYCAPGHPLFTNDAPDDLALQACDRVDHPYRFLRSDEPFQGKLCSARSEQVEGTLAFILSGKHVGYLPSHFARSWEDKGLLRAVRVEEMSFDVGFHLARHRAQVPGDAQKAFEEDLLAAFT
>NZ_CP052861.1|WP_169369869.1|1191327_1192419_-|polyamine-ABC-transporter-substrate-binding-protein
MAPLFKLCFPALLLAMAVSAQAEDKVVNLYSWADYVAPETLQRFEQETGIHVRYDTFDAPEVLETKLLTGGSGYDVVVPSSSVLARGLAAGALKAIPHEGLKGYANLDPDLLEKLSAVDPGNRYGVPYTWGTLGLGMNVEAVKQRLPDVPLNSLDLLFKPEYASKLKDCGISIIDSPQEVIGLALHYLGKDPYSTDQKDLSAAEALLHQLQPNVLYVATGRQISDLANGSVCLALTYNGDASMAADQARKANKPYEVAYRIPKEGTLVWQDNLAIPKDAPHPEAARQFIEFMLRPESVAALTNTLFFATANTAATPLVDEAVRTDPDIYPLADVRDRLYADRSMSLKDMRQRTRLWTTFRSRQ
>NZ_CP052861.1|WP_169369868.1|1190354_1191314_-|agmatinase
MDVPVQNDQAMTRDSLYGTAAESTYAGITSFMRRRYSRDLRGVDVAVSGVPFDTATSNRPGARFGPRGIRAASTGIAWERHWPWTFDPFDHLAVIDYGDCDFDYGTPHSIPESIEAHAEHILNAGSAMLTFGGDHFITYPLLKAHARKHGTLSLIHFDAHSDTWPDEEGKRVDHGTMFWHAAKEGLVDPSRSVQIGLRTTNDDHMGFQVLDARQVHRQGGEAIVEAIRARVGDNPVYLTFDIDCLDPAFAPGTGTPVCGGLSTVQALEILGGLRGINLVGMDVVEVAPAYDSADITSLAAATLAMEMLCLYAAKHKVDR
>NZ_CP052861.1|WP_169369867.1|1189168_1190221_+|aldo/keto-reductase
MHYKVFGRKTGLRVSELALGAGNFGTGWGHGAERDEAKRIFDGYLEAGGNFIDTANGYQGGESEGMLSEFIAAERDRLVIATKFTMGTERTANISFTGNNRKNMVRAAEESLKRLKTDHIDLFWAHISDGVTPMEEILRGFDDLVRAGKIHYAGLSNFPAWRIARADVLAEVRGFSPIAAIQTEYSLAERTAERELLPMAEALGLAATLWSPLGGGFLTGKYRTNDENNRAAKLGMLIHSEKSARETALLDTLLAVAAEMESSPTHVAIAWLREKAKRSTTALIPILGSRTREQLDATLGALNVQLSDEQLARLDGSSDVEPGVPHAMIAGSVARYTGVETLDLPKIPVA
>NZ_CP052861.1|WP_169369866.1|1188261_1188978_-|YafY-family-transcriptional-regulator
MSRTTRLLTLLQVLRGKSRPVTAATLASELEISERTLYRDIAELTALGAPIYGEAGIGYVLRSGLFLPPLMLNADETEAIVLGLRYVDQRGDEVLSKAAADALAKIAAVLAPEALEALHNPTVLPGPSGYGFAQNAVPLNVFRQAIRNQAKLHIDYADANQVPTQRLIWPLALGFLNEVRIIVAWCELRSAYRTFRTDRISTASEQGERYPGRRSDLLRTWRKQMQLDEAGRFTPDKN
>NZ_CP052861.1|WP_149661587.1|1187867_1188209_-|nuclear-transport-factor-2-family-protein
MSSPAASLAPAIAAYIAAANARDTSRVASFFAEDANVFDEGEHQVGPQAIAQWMQDTAQRYQPRVEVLDVQLRTGKVLVHNLISGTFPGSPLELRYTFRLNEQGKIARLDISL
>NZ_CP052861.1|WP_123410416.1|1200310_1200793_-|winged-helix-turn-helix-transcriptional-regulator
MPPHHSSPFESAVPETPDASYVFSEQVGHLLRKAYQRHMAIFQQNVGDSQLTAVQFVTLCAVRDHGPSSLTELVKATAVDQATIRGIVERLKARELITLEPDPQDRRKVIVGLSEAGDRLVQQTVPCAGKITELTLSNLNPAERVAVLFLLRKMIDDPQD
>NZ_CP052861.1|WP_169369875.1|1200957_1202010_-|2,5-dihydroxypyridine-5,6-dioxygenase
MPVSDCELTQMFEHVLKLSKVDTTQSVAVLKSHYSDPRTVRAAMDAAQRLGAKVYAVELPSFNHPTAMGNDMTAYCGDTALTGNIAAQRALEAADLIVDTMMLLHSPEQEQILKTGTRILLAVEPPEVLARMLPTEADKVRVMAAEKLLKQARSIRVTSRAGSDFHAALGQYPAVTEYGFADEPGRWDHWPSGFLFSWPNEETAEGVLVLDIGDIVLPFKTYAREKITLEIEKGFITSIHGGFEAEYLRDYMKYFNDPEVYGISHIGWGLQPKAQWTAMGLHDKNDGMCMDARAFYGNFLFSTGPNTEVGGKRKTPCHLDIPLRNCDVYLDDQAVVIGGDVVAPEASRVR
>NZ_CP052861.1|WP_169369876.1|1202322_1203471_+|NAD(P)-binding-protein
MANTQKIAIVGAGLGGAAAATLLQQAGFQVDIYEQAPEFSRLGAGIHMGPNIMKIFRRMGIEQQLDLMGSHPDHWFSRDGLSGDYLSRIPLGDFARKEYGASYITVHRGDLHALQMSTIKPGTVHFNKRLETLEETDTQVRLTFSDGEVTYADIVIGADGINSKIREELLGAEKPLYSGWVAHRALIRGDQLAKYDLQFEDCIKWWTEDRHMMVYYTTGKRDEYYYVTGVPHPEWDFQGAFVDSSREEMFEAFQGYHPTVQALIESTESVTKWPLRNRNPLPLWSRGRLVLLGDACHPMKPHMAQGAGMAIEDAAMLTRCLQETGLGDYRTAFELYEANRKERASRVQSVSNANTWLRTQEDPAWVYGYDLYAQQLKSGVAA
>NZ_CP052861.1|WP_169369877.1|1203467_1204274_+|alpha/beta-hydrolase
MSTFVYGGNVQANGIRQHYLRYGGKGPALVLIPGITSPAITWGFVAERLGEHFDTYVLDVRGRGLSSTGPDLDYSADACADDIGAFAQAMQLDNYHLVGHSMGARFAVRSAVKHPAGVTRLVLIDPPVSGPGRREYPSKLPWYVDSIRQSLIGMDAEAMRAFCATWTEEQLQLRAEWLHTCYEPAIVRAFNDFHDVDFHQDLPKLQQPALLMIAGRGGVIAPEDEAEILDLQPNIRSVHVANAGHMIPWDDLEGFFAAFGDFLGPRLN
>NZ_CP052861.1|WP_169369878.1|1204292_1205045_+|Asp/Glu-racemase
MLKPYRIGQIVPSSNTTMETEIPAMLNARQLIRPERFTFHSSRMRMKQVRKEELAAMDGESDRCAVELSDAKVDVLGYACLVAIMAMGLGYHRKSEQRLRKATADNDANAPVITSAGALIEGLKVMGAKRIAIVAPYMKPLTELVVNYIREEGFEVVDWRALEIPDNLAVARHDPANLPGIVAGMNLEGVDVIVLSACVQMQSLPVVAHVEAQTGKPVLTAAIATTYAMLKALDLEPIVPGAGALLSGAY
>NZ_CP052861.1|WP_169369879.1|1205057_1205690_+|isochorismatase-family-protein
MSEQTANDNYQGVWGQRIGFGQKSALLMIDFMRGYTTEGAPLFAPGVVSAVAESVELLSSARRQGIPVVHTNIRYHPGHFADGGIWVKKAPVMKDMVEGNPLAAFCEEVLPTDDEVVISKQYASAFFGSSLASMLHAQGIDTVVLAGCSTSGCIRATAVDAVQHGFRTIVVRECVGDRHPAPHEANLFDIDSKYGDVVSKREAIAHFEKM
>NZ_CP052861.1|WP_169369880.1|1206094_1207405_+|MFS-transporter
MPIANAAPATTVADPIQALYHKITWKLIPFLCFCYLAAYLDRINIGFAKLQMLDQLHFSETAFGLGAGLFFVGYILFEVPSNLVLEKVGAKIWIARIMITWGLLSACTMLVTSTTQFYVLRFLLGAAEAGFLPGVLYYLTTWFPTYRRGRIIALFMIGLPLSSVIGGPLSGWVMSHFDTLGGLHGWQWLFLIEAVPSVLLGVLTFWALPNNYQQAKWLNDEEKVLLEQELRADEAGASDSKHSFRDGFFNLKVWMLGGIDFSILLSAYAMGFWMPTFIRNAGIVDTFHIGILTALPSVAALLGMLLIGASSDKHRERRWHIIVPFLVGAAAMASAPFFVHNVVATVALFAIASAAIIGAVPVFFSLPATFLKGTAAATGFALACSVANIAGLVSNSLMGVAIDVTGSSAGALWFFAGCLILSSFLVIALPAKLVNR
>NZ_CP052861.1|WP_169369881.1|1207503_1208583_+|nucleoside-hydrolase
MQGLIKRCALLVAAGLCAGSLQAAEKVIFDTDFNVLNDDGQAFIMLAQLHAQKRIDLLGMTLVSGNAWVDQEQVDALKAVERMGVEKDVGVYSGAAYPLLHDFATYEQEKALFGAGWPGAFKAPRPTSATQLIAPPDGLATHTKLRKETAAQFIIDSVRANPHEVTLLAVGPLTNIALAIRSAPDIVPLIKRIVYMGGALEIPGNTTPAAEFNWWFDPEAAKIVLRSPIEHVIFPNDVCEKVTFDAAVYKRVIAKPGPIADLYKHEFGALFDKDPAYHSFTWDSLPALFLVEPGIVTESRDLWVDVDAQFGADYGRALGYKKSPPVGTRKAKVVFAIDQKQFWDGYVNLVTLPTPVKGH
>NZ_CP052861.1|WP_169369882.1|1208710_1209184_+|hypothetical-protein
MRRLLALSLSLLLLSLSACALFPNRDPLNINVVGIEPLQSQDLEVRFAVKIRVQNPNETAIDYNGVALDLEVNGRPLASGVSDQSGSIPRFSEAVLTVPVSVSAFSVLRQTLGLSQTQTLDNLPYVLRGKLAGGLFGTMRFVDTGKLSFPGSSAATW
>NZ_CP052861.1|WP_169369883.1|1209236_1209788_+|GNAT-family-N-acetyltransferase
MEVTPTLYTERLILRPLELADAPAIQQQFPHWEVVRYLNALVPWPYPADGALTYLRDIALPAIARGEEWHWSIRLKSAPGQLIGNVSLMDHQDNNRGFWLAPHCQGQGLMTEASAAVTEYWFQTLGRPLMRVPKATPNIGSRKLSERAGMRLIRSDEDNFVSGRFQRDIWEITREEWLQTFNK

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Crispr_ID: NZ_CP052861_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052861_2

3366244-3366346

Orphan

Consensus_repeat	Method
CGTTCCCACGCGGAGCGTGGGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052861_2

>merge|NZ_CP052861|2|3366244-3366346|CRISPRCasFinder
CGTTCCCACGCGGAGCGTGGGAATGCCGCCCGGGACGCTCCGCGTCCCTTCGCAGGCGTGACGCAGAGCGTCACAGGATGCGTTCCCACGCGGAGCGTGGGAA

>NZ_CP052861|2|2|3366244-3366346|CRISPRCasFinder
CGTTCCCACGCGGAGCGTGGGAA	TGCCGCCCGGGACGCTCCGCGTCCCTTCGCAGGCGTGACGCAGAGCGTCACAGGATG
CGTTCCCACGCGGAGCGTGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052861.1\|WP_169371584.1\|3365320_3366223_+\|acyltransferase	unknown	unknown	gnl\|CDD\|237584
NZ_CP052861.1\|WP_169371581.1\|3361761_3362244_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP052861.1\|WP_169371585.1\|3366417_3368316_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|180120
NZ_CP052861.1\|WP_008150718.1\|3362367_3362853_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP052861.1\|WP_169371580.1\|3360471_3361575_-\|NADH:flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240095
NZ_CP052861.1\|WP_169371583.1\|3363220_3365320_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NZ_CP052861.1\|WP_054049875.1\|3368325_3369243_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP052861.1\|WP_169371578.1\|3358365_3359127_+\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP052861.1\|WP_169371577.1\|3355744_3357028_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP052861.1\|WP_169371582.1\|3362821_3363160_+\|DUF3565-domain-containing-protein	unknown	unknown	gnl\|CDD\|378808
NZ_CP052861.1\|WP_133838552.1\|3375648_3376914_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP052861.1\|WP_169371590.1\|3373431_3374757_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NZ_CP052861.1\|WP_169371579.1\|3359156_3360356_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340842
NZ_CP052861.1\|WP_169371587.1\|3370350_3371505_+\|Do-family-serine-endopeptidase	unknown	unknown	gnl\|CDD\|273938
NZ_CP052861.1\|WP_169371589.1\|3372376_3373429_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
NZ_CP052861.1\|WP_007912386.1\|3376936_3377176_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227340
NZ_CP052861.1\|WP_169371586.1\|3369489_3370248_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|182741
NZ_CP052861.1\|WP_169371588.1\|3371764_3372175_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052861.1\|WP_133838567.1\|3357087_3358050_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP052861.1\|WP_092273233.1\|3374883_3375519_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234971

Protein	Function_ID	Function_description	E-value
NZ_CP052861.1\|WP_169371584.1\|3365320_3366223_+\|acyltransferase	gnl\|CDD\|237584	PRK14014, PRK14014, putative acyltransferase; Provisional.	0
NZ_CP052861.1\|WP_169371581.1\|3361761_3362244_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	4.64955e-87
NZ_CP052861.1\|WP_169371585.1\|3366417_3368316_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|180120	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional.	0
NZ_CP052861.1\|WP_008150718.1\|3362367_3362853_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	1.1464e-66
NZ_CP052861.1\|WP_169371580.1\|3360471_3361575_-\|NADH:flavin-oxidoreductase	gnl\|CDD\|240095	cd04747, OYE_like_5_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_CP052861.1\|WP_169371583.1\|3363220_3365320_+\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NZ_CP052861.1\|WP_054049875.1\|3368325_3369243_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP052861.1\|WP_169371578.1\|3358365_3359127_+\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	6.71146e-129
NZ_CP052861.1\|WP_169371577.1\|3355744_3357028_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	7.45444e-55
NZ_CP052861.1\|WP_169371582.1\|3362821_3363160_+\|DUF3565-domain-containing-protein	gnl\|CDD\|378808	pfam12088, DUF3565, Protein of unknown function (DUF3565). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.	4.42822e-31
NZ_CP052861.1\|WP_133838552.1\|3375648_3376914_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP052861.1\|WP_169371590.1\|3373431_3374757_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NZ_CP052861.1\|WP_169371579.1\|3359156_3360356_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	1.13025e-142
NZ_CP052861.1\|WP_169371587.1\|3370350_3371505_+\|Do-family-serine-endopeptidase	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.46748e-146
NZ_CP052861.1\|WP_169371589.1\|3372376_3373429_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP052861.1\|WP_007912386.1\|3376936_3377176_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|227340	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription].	5.75338e-34
NZ_CP052861.1\|WP_169371586.1\|3369489_3370248_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|182741	PRK10799, PRK10799, type 2 GTP cyclohydrolase I.	1.51419e-114
NZ_CP052861.1\|WP_133838567.1\|3357087_3358050_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	5.35945e-164
NZ_CP052861.1\|WP_092273233.1\|3374883_3375519_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234971	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed.	1.69801e-126

>NZ_CP052861.1|WP_169371584.1|3365320_3366223_+|acyltransferase
MLAFLPAPVRGVIASLLLALNTILLCSFLFIVALFKVLPFALTQRFTRWLMSHTHEAWISNNKAWMNLVCRTRWHLSGLEGLDYQHSYLITSNHQSWVDIMVLQYVLNRRIQPLKFFLKQELIWVPVIGLAWWALGFPFMKRYSKAYLEKHPEKKGKDLETTRKTCDKFRNSSVGIFNFVEGTRFTEGKHAQQKSPFKHLLKPKAGGIAFVLDAMGEQLESIVNVTIHYPAGRPGYWDLLCGNVKDVVVHFQELKIPPQFIGKNYDQDGEYRLQFQGWINQLWEDKDALLAQMHREYPAK
>NZ_CP052861.1|WP_169371583.1|3363220_3365320_+|phosphate-acetyltransferase
MQTFFIAPTDFGVGLTSISLGLVRTLERAGLKVGFFKPIAQPHPGDTGPERSTELVARTHGLKPPQPLGLAHVERMLGDGQLDELLEEIITLYQQAAVGKDVLVVEGMVPTRSASYAARVNLHLAKSLDADVILVSAPESEALTELSGRVELQAQLFGGPKDPKVLGVILNKVKTDESMEAFASRLKEHSPLLRTGDFRLLGCIPFQPELNAPRTRDVADLMGAQILNAGDYETRRMTKIIICARTMRNTVELLKPGVLVVTPGDRDDIILAVSLAAMNGVPLAGLLLTSDTLPDPRIMDLCRGALQAGLPVLSVSTGSYDTANQLNGLNKEIPIDDRERAEIITDFVASHLDAKWLHQRCGTPREMRLSPAVFRYQLIQRAQAANKRIVLPEGSEPLTVQAAAICQARGIARCVLLAKPADVEAVARAQGIELPPGLEILDPDLIRGNYIEPMVALRKSKSLNAPMAEQQLEDTVVIGTMMLALDEVDGLVSGVIHSTANTIRPALQLIKTAPGCTLVSSVFFMLFPEEVLVYGDCVMNPHPSASELAEIALQSADSAAAFGITPRVAMISYSSGESASGEEVEKVREATLLAHEQQNSLLIDGPLQYDAAANETVARQLAPNSQVAGRATVFVFPDLNTGNTTHKAVQRSADCVSLGPMLQGLRKPVNDLPRGAQVDDIVYTIALTAIQAANRPMDL
>NZ_CP052861.1|WP_169371582.1|3362821_3363160_+|DUF3565-domain-containing-protein
METALLAAISMGRDLLQKNIERPSLAKQSPESEHNPDRRIAMKPSTVTGFHQDEDGHWVAELSCGHTQNLRHQPPWQSRAWVQDPVQRIEKIGQPFDCGWCAQGSVSDNLGD
>NZ_CP052861.1|WP_008150718.1|3362367_3362853_-|peptidylprolyl-isomerase
MLIAANKAVSIDYTLTNDAGEVIDSSAGGAPLVYLQGAGNIIPGLEKALEGKTVGDELTVAVEPEDAYGEYAAELVSTLSRSMFEGVDELEVGMQFHASAPDGQMQIVTIRDLDGDDVTVDGNHPLAGQRLNFQVKIIDIRDASQEEIAHGHVHGEGGHHH
>NZ_CP052861.1|WP_169371581.1|3361761_3362244_-|glutathione-peroxidase
MSAFHDLKLTALDGQELPLAPFKGQVVLVVNVASKCGLTPQYAALENLYQQFKDKGFSVLGLPCNQFAGQEPGTEQEIQEFCSLNYGVSFPLSSKLEVNGHERHQLYRLLAGEGAEFPGDITWNFEKFLLGKDGRVLARFSPRTAPDDPTIVHAIEKALS
>NZ_CP052861.1|WP_169371580.1|3360471_3361575_-|NADH:flavin-oxidoreductase
MPVKALFKPFHLGSLELPTRVVMAPMTRSFSPGGVPNSKVIEYYRRRAAGGVGLIITEGTTVGHKASNGYPNVPHFYGEAALAGWKKVVDAVHAEGGKIVPQLWHVGSVRRIGTEPDASVPGYGPSEKLKDGQVVVHGMTKQDIQDVIAAFAQSAKDAQSIGMDGVEIHGAHGYLVDQFFWEGTNQRTDEYGGSLANRSRFAIELIQAVRAAVGEGFPIIFRFSQWKQQDYTARLVQTPEALGEFLKPLSDAGVDIFHCSTRRFWEPEFDGSELNLAGWTRKLTGKPTITVGSVGLDGEFLQFMVNTDKVAQPASLEKLLERLNNDEFDLVAVGRALLVDPDWAQKVRDGREEDILPFSREALMTLV
>NZ_CP052861.1|WP_169371579.1|3359156_3360356_+|glycosyltransferase-family-1-protein
MASADTEVMTTALHITLITETFPPEINGVAHTLGRLCDGLRARGHQVELVRPRQGSDRQLGSDDALLLCRGWPLPGYPGLQWGQSSMHKLLRRWKRHRPDVLYIATEGPLGLSALRAARRLGISVVSGFHTNFQQYSSQYGLGLLTRLLTHYLRWFHNRSTLTLVPSISQRLELERRQFERLALLSRGVDSQLFHPAKRLDALREQWGLADDDIAVIHVGRLAPEKNLGLLKRSFDALKNTYPQRNLKLIVVGDGPLRVALEKTLPEAIFCGSQRGEALASHYASGDVFLFPSLTETFGNVVLEALASGLGVVAYDMAAAGQHIRHGYNGVLAMPGDEEAFCEAARWLLEERETLRCVRLNARQHASRQGWAAIIEQFEGQLRGACVQEQPLPGAPLLP
>NZ_CP052861.1|WP_169371578.1|3358365_3359127_+|sulfate-transporter-CysZ
MPAPVLSGPQYLREGLKLVLSPGLRLFVLLPLAINLVLFVGLIYLAGHQFSMWVDTLMPSLPDWLSFLSYILWPIFVVLVGFMVFFTFTMLANVIAAPFNGFLAEKVEVVVRGTDDFPAFSWGELIEMIPRTLAREMRKLGYFLPRALGLFILSFIPVVNIIAAPLWLLFGVWMMAIQYIDYPADNHKLGWNEMLAWLRQKRWQSMSFGGIVYLVLLIPVVNILMMPAAVAGATLFWVRERGAENLVPQRAAS
>NZ_CP052861.1|WP_133838567.1|3357087_3358050_-|thioredoxin-disulfide-reductase
MSEVRHSRVIILGSGPAGYSAAVYAARANLKPLLITGMQAGGQLTTTTEVDNWPGDVHGLTGPALMERMKEHAERFETEIVFDHINAVDFAAKPYTLTGDSATYTCDALIIATGASARYLGLPSEEAFMGKGVSACATCDGFFYRNKPVAVVGGGNTAVEEALYLANIASTVTLIHRRETFRAEKILIDKLNARVAEGKIILKLNSNLDEVLGDNMGVTGARLKNNDGSFDELTVDGVFIAIGHTPNTSLFEGQLTLKDGYLVVHGGREGNATATNLEGIFAAGDVADHVYRQAITSAGAGCMAALDAERYLDDLQNAKF
>NZ_CP052861.1|WP_169371577.1|3355744_3357028_+|FAD-binding-oxidoreductase
MSFPTTWYSQTSLPRAARPALNSDETCDVCIIGAGIAGLTAALELTRRGKRVIILEANQVAWGASGRNGGVVSPGWAEGSGAIRKKLGLEQTKALFWMSAEGVEIVRDNITELALAGCAPSAGTIRVKRYDDGAEVKNHIETMRRDFGYELNFLDTAQVRERAHTLRYFQGVEDPNALHFHPLNYCLGLALAIEAAGGRIFEHSKMLAWQHQGADKIVRTAHGTVCCQDLVFCAGGYGGPELQKLSRAYLPIATYVVLTEHLGDGIKNVLDSGAAFSDDRRASDYYRVVEGDRLLWGGRITTRNEQDEKALAAMLKADMVSVYPQLAAVKIDLAWSGLMGYSTNKMPNLGLLEPGVWACTSFGGHGLNTGSIGGRVIAEAVCGESARYELFKPYLLDWNGGPFGKIAANAIYQSLKVMDFVQERLRG
>NZ_CP052861.1|WP_169371585.1|3366417_3368316_-|sulfate-adenylyltransferase-subunit-CysN
MSHVSDLISEDILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKVGTTGEDIDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSFIASLLGIKHIVVAINKMDLNGFDESVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYTGQSLMEILETVEIANDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEVVVLPSGKSSRVKSIVTFEGELEHAGPGQAVTLTMEDEIDISRGDLLVHADNLPQVTDAFDAMLVWMAEEPMLPGKKYDIKRATSYVPGSITSIVNRVDVNTLEEGPASSLNLNEIGRVKVSLDAAIALDGYASNRTTGSFIVIDRLTNGTVAAGMIIAQPSAHGGSTHHGKLAHVATEERAQRFGQQPATVLFSGLSGAGKSTLAYAVERKLFDLGRAVFVLDGQNLRHDLNKGLPQDRAGRTENWRRAAHVARQFNEAGLLTLAAFVAPSAEGREQAKDLIGKERLLTVYVQASPTVCAERDPQGLYAAAGDNIPGDSFPYDVPLDADLVVDTQSLSLEESVKQVLDLLRSRGAI
>NZ_CP052861.1|WP_054049875.1|3368325_3369243_-|sulfate-adenylyltransferase-subunit-CysD
MVDKLTHLKQLEAESIHIIREVAAEFDNPVMLYSVGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYAFRDRMVEELGLDLIVHVNPDGVAQGINPLTHGSAKHTDIMKTEGLKQALDKYGFDAAFGGARRDEEKSRAKERVYSFRDTKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAAERDVIEMNGTWIMIDDERLLNHLSDEDKARIVKKKVRFRTLGDYPLTGAVESEATSLTDIIQEMLLTRTSERQGRVIDHDGAGSMEEKKRQGYF
>NZ_CP052861.1|WP_169371586.1|3369489_3370248_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MAVALSTLVEEADRYLNSSKIADYCPNGLQVEGRPQVMRIVSGVTASQALLDAAVDAKADLVLVHHGYFWKGENPCITGMKQRRLKTLLKHDISLLSYHLPLDLHPDVGNNVQLARQLDITVEGPLDPDNLKVVGLVGSLSEPMSPRDFARRVQEVMGREPLLIEGSEMIRRVGWCTGGGQGYIDQAVLAGVDLYLSGEASEQTFHSARENDISFIAAGHHATERYGVQALGDYLARRFALEHIFIDCPNPI
>NZ_CP052861.1|WP_169371587.1|3370350_3371505_+|Do-family-serine-endopeptidase
MLKALRFSGWPLLAGVLIALLIIQRYPQWVGLPSLDVNLQQAPQTTSVQQGPVSYADAVVIAAPAVVNLYTTKVINKPNHPLFEDPQFRRFFGDNSPKQKRMESSLGSGVIMSPEGYILTNNHVTTGADQIVVALKDGRETLARVIGSDPETDLAVLKIDLKTLPAITIGRSDNIRIGDVALAIGNPFGVGQTVTMGIISATGRNQLGLNNYEDFIQTDAAINPGNSGGALVDANGNLTGINTAIFSKSGGSQGIGFAIPVKLAMEVMKSIIEHGQVIRGWLGIEVQPLTQELAESFGLSGRPGIVVAGIFRDGPAQKAGLQLGDVILSIDGEPAGDGRRSMNQVARIKPTDKVSIQVMRNGKELKLSAEIGLRPPPAPVKEEE
>NZ_CP052861.1|WP_169371588.1|3371764_3372175_+|hypothetical-protein
MSKTFRHIDPQDLKKAEPADGELTAQVAGEEEFVATAVYHAASWIVGNKEDSPKNSFVALSYPDTAEEGLNKFTYNKGSLMYPVVWEFNLNGVSRDAETGTLNITINSPLKQYSGHFTFVLDDGKELKGNFNFIKR
>NZ_CP052861.1|WP_169371589.1|3372376_3373429_-|histidinol-phosphate-transaminase
MSKFWSPFVKDLVPYVPGEQPKLAKLVKLNTNENPYGPSPKALAAMQTELNDNLRLYPDPNSDLLKNAVAKYYGVQSNQVFLGNGSDEVLAHIFHGLLQHDNPVLFPDISYSFYPVYCGLYGIQFDAVPLDAQFQINPADYAKPNGGIIFPNPNAPTGCLLALDAVEQILKASPDSVVVVDEAYIDFGGETAISLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFNSYPLDRLANVGAAAAFEDREYFDKTCRLVIENREKVVAQLEGKGFEVLPSAANFIFARHPQHDAAGLAAKLREQGVIVRHFKQERIAQFLRISIGTPEQNQALIDGLGDL
>NZ_CP052861.1|WP_169371590.1|3373431_3374757_-|histidinol-dehydrogenase
MTAPTAIRRLNAADPDFAHHLDHLLSWESVSDDSVNQRVLDIIKAVRERGDAALVEFTQKFDGLQVASMADLILPRERLELALTRITAPQREALEKAAARVRSYHEKQKQDSWSYTEADGTVLGQKVTPLDRAGLYVPGGKASYPSSVLMNAIPAKVAGVTEVVMVVPTPRGEINELVLAAACIAGVDRVFTIGGAQAVAALAYGTESVPKVDKVVGPGNIYVATAKRHVFGQVGIDMIAGPSEILVVCDGQTDPDWIAMDLFSQAEHDEDAQAILVSPDAEFLDKVAASISKLLPTMERAEIIETSINGRGALILVRDMEQAIEVANRIAPEHLELSVADPQAWLPLIRHAGAIFMGRHTSEALGDYCAGPNHVLPTSGTARFSSPLGVYDFQKRSSIIFCSEQGASELGKTASVLARGESLTAHARSAEYRIVDDKKGN
>NZ_CP052861.1|WP_092273233.1|3374883_3375519_-|ATP-phosphoribosyltransferase
MLTIALSKGRILDDTLPLLAEAGIVPTENPDKSRKLIIPTTQPDVRLLIVRATDVPTYVEHGAADLGVAGKDVLMEYGGQGLYEPLDLRIALCKLMTAGKVGAIEPKGRLRVATKFVNVAKRYYAEQGRQVDIIKLYGSMELAPLIGLADKIIDVVDTGNTLRANGLEPQDFIADISSRLIVNKASMKMQHARIQALIDTLRKAVESRHRG
>NZ_CP052861.1|WP_133838552.1|3375648_3376914_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MDKLIITGGVRLDGEIRISGAKNSALPILAATLLCDGPVTVANLPHLHDITTMIELFGRMGIEPVIDEKLSVEIDPRTIKTLIAPYELVKTMRASILVLGPMVARFGEAEVALPGGCAIGSRPVDLHIRGLEAMGAVIDVEGGYIKAKAPEGGLRGAHFFFDTVSVTGTENIMMAAALAKGRSVLANAAREPEVIDLANFLIAMGAKITGAGTDTITIDGVERLHPATYKVMPDRIETGTYLVAAAVTGGRVKVKDTDPTILEAVLEKLRESGAEITCGEDWIELNMHGKRPKAVNVRTAPYPAFPTDMQAQFISLNAIAEGTGAVIETIFENRFMHVYELHRMGAKIQVEGNTAIVTGTEKLKGAPVMATDLRASASLVISALIAEGDTLIDRIYHIDRGYECIEEKLQMLGAKIRRVPG
>NZ_CP052861.1|WP_007912386.1|3376936_3377176_-|BolA-family-transcriptional-regulator
MQAVEVKSFLEGKLPGTLVEVEGEGCNFQLNVISDELAALSPVKRQQQIYAHLNPWITDGSIHAVTMKFFSSAAWAERT

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Crispr_ID: NZ_CP052861_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052861_3

4202019-4202112

Orphan

Consensus_repeat	Method
GAGGCATTCCCACGCGGAGCGTGGGAACGATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052861_3

>merge|NZ_CP052861|3|4202019-4202112|CRISPRCasFinder
GAGGCATTCCCACGCGGAGCGTGGGAACGATCAATCTAAAGCCGAACGCGGAGCGTCCGTTGAGGCATTCCCACGCGGAGCGTGGGAACGATCA

>NZ_CP052861|3|3|4202019-4202112|CRISPRCasFinder
GAGGCATTCCCACGCGGAGCGTGGGAACGATCA	ATCTAAAGCCGAACGCGGAGCGTCCGTT
GAGGCATTCCCACGCGGAGCGTGGGAACGATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052861.1\|WP_169372147.1\|4203210_4204140_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP052861.1\|WP_169372146.1\|4200496_4201162_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP052861.1\|WP_054616563.1\|4207410_4207737_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052861.1\|WP_169372140.1\|4191338_4194392_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP052861.1\|WP_169372145.1\|4199077_4199860_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP052861.1\|WP_169372153.1\|4211562_4213179_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293752
NZ_CP052861.1\|WP_169372148.1\|4204193_4204775_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369095
NZ_CP052861.1\|WP_169372139.1\|4190600_4191230_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP052861.1\|WP_003220570.1\|4205064_4205466_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP052861.1\|WP_169372141.1\|4194388_4195456_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP052861.1\|WP_169372149.1\|4205467_4206193_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP052861.1\|WP_169372144.1\|4198199_4199081_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270412
NZ_CP052861.1\|WP_169372142.1\|4195452_4196556_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP052861.1\|WP_169372151.1\|4207949_4210301_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NZ_CP052861.1\|WP_054047863.1\|4202174_4202957_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NZ_CP052861.1\|WP_169372138.1\|4190071_4190416_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052861.1\|WP_123515920.1\|4199856_4200516_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP052861.1\|WP_169372150.1\|4206238_4207048_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_CP052861.1\|WP_169372152.1\|4210466_4211411_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP052861.1\|WP_169372143.1\|4196858_4198019_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226984

Protein	Function_ID	Function_description	E-value
NZ_CP052861.1\|WP_169372147.1\|4203210_4204140_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	3.04895e-95
NZ_CP052861.1\|WP_169372146.1\|4200496_4201162_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.36196e-58
NZ_CP052861.1\|WP_169372140.1\|4191338_4194392_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP052861.1\|WP_169372145.1\|4199077_4199860_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.49408e-144
NZ_CP052861.1\|WP_169372153.1\|4211562_4213179_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|293752	cd16028, PMH, Phosphonate monoester hydrolase/phosphodiesterase. Phosphonate monoester hydrolase/phosphodiesterase hydrolyses phosphonate monoesters or phosphate diesters using a posttranslationally formed formylglycine as the catalytic nucleophile. PMH is the member of the alkaline phosphatase superfamily. The structure of PMH is more homologous to arylsulfatase than alkaline phosphatase. Sulfatases also use formylglycine as catalytic nucleophile.	7.04526e-159
NZ_CP052861.1\|WP_169372148.1\|4204193_4204775_-\|alpha/beta-hydrolase	gnl\|CDD\|369095	pfam06821, Ser_hydrolase, Serine hydrolase. Members of this family have serine hydrolase activity. They contain a conserved serine hydrolase motif, GXSXG/A, where the serine is a putative nucleophile. This family has an alpha-beta hydrolase fold. Eukaryotic members of this family have a conserved LXCXE motif, which binds to retinoblastomas. This motif is absent from prokaryotic members of this family.	7.15821e-78
NZ_CP052861.1\|WP_169372139.1\|4190600_4191230_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.84838e-22
NZ_CP052861.1\|WP_003220570.1\|4205064_4205466_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.89732e-41
NZ_CP052861.1\|WP_169372141.1\|4194388_4195456_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.65939e-65
NZ_CP052861.1\|WP_169372144.1\|4198199_4199081_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270412	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold. This subfamily comprises of the periplasmic-binding protein component of ABC transporter specific for cysteine and its closely related proteins. The cysteine-binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.40215e-93
NZ_CP052861.1\|WP_169372142.1\|4195452_4196556_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.59068e-64
NZ_CP052861.1\|WP_169372151.1\|4207949_4210301_-\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	6.71931e-59
NZ_CP052861.1\|WP_054047863.1\|4202174_4202957_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	3.15234e-126
NZ_CP052861.1\|WP_169372149.1\|4205467_4206193_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	1.07458e-51
NZ_CP052861.1\|WP_123515920.1\|4199856_4200516_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	5.32687e-66
NZ_CP052861.1\|WP_169372150.1\|4206238_4207048_-\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	3.8452e-23
NZ_CP052861.1\|WP_169372152.1\|4210466_4211411_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.67714e-39
NZ_CP052861.1\|WP_169372143.1\|4196858_4198019_+\|AAA-family-ATPase	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	4.43522e-117

>NZ_CP052861.1|WP_169372146.1|4200496_4201162_-|amino-acid-ABC-transporter-permease
MTFDYAFILSTLPAFLKAVGVTLQVGFIAIGTSLLVALINATILVFRTPYLQRLVGLYVELARNTPLLIQLFFVYFALPTLGIRVSGFTAAIITMTFLGGAYLTEVLRAGVDAVPQAQLESGRSIGLSHGQLLRYVILPQAGILSLPSLFANFIFLLKETTVVSAVAVPEILYTTKSYIALYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQHGQFGS
>NZ_CP052861.1|WP_123515920.1|4199856_4200516_-|amino-acid-ABC-transporter-permease
MASSGLELLWVSLPQLGKGAAQTLSISFLSIAISTVGGVLYGVLRTLNSKWLNAILRVYLELFRAIPVLVWLYLLFFGLPIFFGLSIPSFWCAVLVLSLWGASEVGEVVRGALLSLPRGQREAGLSIGLDGPQLYGYVLLPQALKRMTPPTINVYTRIIKTSSLAVLIGVVDVIKVGQQIIERTYESVLIYGALFLFFFFICYPLSAASRVLERRWTQA
>NZ_CP052861.1|WP_169372145.1|4199077_4199860_-|amino-acid-ABC-transporter-ATP-binding-protein
MSALIEFKGFNKFFGEQQVLKEIDLQVKSGEVIVILGPSGCGKSTLLRCLNGLEVAHSGSLTFNGRELLDKGTDWRDVRQQIGMVFQSYHLFPHMNVLDNLLLGPVKVQKRERREARDQAEALLARVGLSDKRDAFPRQLSGGQQQRIAIVRSLCMNPKVMLFDEVTAALDPEMVKEVLEVIQGLAREGMTLLIVTHEMAFARAVADRIVFMDAGRILEQNPPELFFTNPQTARAQQFLEKFSYVEALPKKTQTKELELL
>NZ_CP052861.1|WP_169372144.1|4198199_4199081_-|transporter-substrate-binding-domain-containing-protein
MKTAKSSLFLLPLLGLALLAGCNKSEEPPKPKVASESAAPAGYLDKIKARDKLIVGVFTDKPPFGFVDEAGRYVGFDTDIGRQFAKDLLGDENKVEFVAVEPASRIPFLQSDKVDLILANMTVTPERKEAVEFTNPNLKVAVQALVPQGSSVKNLDDLATRTTIVTTGTTADIWLTKNHPDWKLLKFEKNSESLQALANGRGDAYAQDNLVLFSWAKQNPGYRVLTQTLGAEAPIAPAVKKGNLELRDWVNTELAKLGEEKYLLKLYDQYVRKELSDDTKPESVIVEGGKWQG
>NZ_CP052861.1|WP_169372143.1|4196858_4198019_+|AAA-family-ATPase
MLKTLAVANYRSINKLVIPLGRLNLITGPNGSGKSNLYRALRLLAETAQGGVVNALAREGGLDSTFWAGPENISRRMRNGEVPIEATVRQGVKRLRLGFAGEDFSYSIALGLPAPTESYFALDPEIKKECIWAGPLYRPASLLVDRDGPMIRAREGRNWDVLAQHTPNFDSLFDQVGSFRTSPEVMHLREFIRRWRFYDHFRSDADAPVRQPQLGTRTPVLHHDGRDLAAALQTIREIGDPEALQAAISDAFPGARLNIAPLQGGRFAIEFYQEGLLRPLSAAELSDGTLRYLLLVAALLTPRPPSLMVLNEPETSLHPDLLPALARLIIRASEQCQVWVVSHARRLISALQEDLECNCIVLEKTLGQTGIVGQRVLDEPAWNWPD
>NZ_CP052861.1|WP_169372142.1|4195452_4196556_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MAGTGLKIMVGVGVFALLTACGDKKPVEKDLPRVFVQAVKPADYAASVTLTGDVQARVQTELSFRVGGKIIQRMVDVGDRVSAKQVLAKLDPKDLQTNVDSAQAQVTAEQARVKQTAAAFVRQQKLLPKGYTSQSEYDAAQAALRSSQSALTAAQAQLANAREQLSYTSLISEAPGVITARQAEVGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPADKSVVVSLLDNPAIKTTGTVREITPAVSAQTGTVQVKVTLHGLPDGMQLGSVVSATAKAPGKSAVELPWSALTKNLSEPAVWLVDADGKAQLHNVTVGRYLTGKVIISGGLDGGEKVIIAGGQLLHPGMKVEIAENTYKDLAPGAEQ
>NZ_CP052861.1|WP_169372141.1|4194388_4195456_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKRLMLLSAGLLLAACSKEEPPPEPVRPVLSIEVKALNQEDLGRFAGSIQARYESNIGFRVPGRIASRNVDVGAEVEKGALLATLDPTDQQNQLRSAEGDLARIQAQFINAQASARRQQELFDRGVGAQAQLDIAQTDLKTTQASLDQAKAAVDQAKDQLNYVQLRTDHKAIVTAWNAEAGQVVTAGQQVVTLAQPDIKEAVIDLPDILVDQLPADVVFQVAAQLDPSITSTAIIREIEPQAQSATRTRRARLTLTDTPAGFRLGTAISVTLSSAIKPRLELPVTALQEVDGKTRIWVVDPQTQTVSPRDVSLISRTDSTVVLANGVKSGERVVSAGVNSLKPGQKVKVDEGNPQ
>NZ_CP052861.1|WP_169372140.1|4191338_4194392_-|efflux-RND-transporter-permease-subunit
MKGSFNLSEWALKHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMVIQTRWPGATQEETLKQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLRDTTSAKDIPEIWYQVRKKINDIRGEFPQGLQGPGFNDEFGDVFGSVYAFTADGLSMRQLRDYVEQVRAAVRDVPGLGKVEMIGEQDEVLYLNFSTRKLAALGIDQRQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFASEKDLANVNLRLNDRFYRLADIADISRGYVDPSTPQFRFNGHSAIGLAIAMKKGGNIQEFGKALHQRMTDLTADLPVGVGVHNVSDQAAVVEKAVGGFTSALFEAVVIVLIVSFISLGVRAGLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTRLEMGETKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMILSWIVAVLFAPVIAVHILSTNVKPHSAEPGRIGRAFNGGMLWAMRNRWWAIGITVALFVASVFSMQFVQNQFFPSSDRPEILVDLNLPQNASIDETRKAVDKLEATFKDDPDIVRWSTYIGEGAIRFYLPLDQQLQNPYYAQLIIVSKGLESRTALSQRLRERLRKDFVGIGSYVQALEMGPPVGRPIQYRVSGKDIDQVRKHAIELATELDKNSHIGEIIYDWNEPGKVLRIDIAQDKARQLGLSSEDVANLMNSIVVGSPITQVDDDIYLINVVGRAEDAERGTPETLQNLQIVTPGGTSIPLLAFATVRYELEQPLVWRRDRKPTITIKAAVRDEIQPTDLVKQLQPTIDKFAAGLPVGYKVATGGTVEESGKAQGPIAKVVPLMLFLMATFLMIQLHSVQKLFLVASVAPLGLIGVVLALIPTGTPMGFVAILGILALIGIIIRNSVILVTQIESLEKEGVEPWDAVAQATEHRRRPILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYKIREPKKESA
>NZ_CP052861.1|WP_169372139.1|4190600_4191230_+|class-I-SAM-dependent-methyltransferase
MKQTPDDLQKITATTLGHYNSVAEGFREGTRDHDVSQNIDALLRHIQGAAPFSILDFGCGPGRDLQTFTRMGHIAVGLDGSEKFAQMAREDSGCEVWQQDFLKLDLPAERFDGIFANAVLFHIPRQELPRVLKELHAALKPGGVLFSSNPRGENQEGWNGPRYGAYHDLQAWQALLTEAGFVELEHYYRPAGLPREQQPWLASVWRRAD
>NZ_CP052861.1|WP_169372138.1|4190071_4190416_+|hypothetical-protein
MKRSVPDPPSNAPENDAPLRDRSALYRAIDFYLTGDQPSAPDELRFYNVSDDVSFEDTQLYVADLLRCASVTAYQCGDQLKGAERAMVFSVWHLLEIAKAMVDRSIDCLGMKQS
>NZ_CP052861.1|WP_054047863.1|4202174_4202957_-|ABC-transporter-substrate-binding-protein
MKKVLLFTALAAALTAGLAQAGEKLVVAATPVPHAEILELIKPTLAKEGVDLEIKVFTDYVQPNVQVDQKRLDANYFQTLPYLKSFNEGKGTNLVTVIGVHVEPFGGYSKKVKTLAELKDGATIAIPNEGSNSGRALILLQKAGLIELKDPKNALATPKDIAKNPHNFKFKELESAMLPRVLDQVDLDMINTNYALEAGLNPAKDALVIEGADSPYVNFLVARPDNKDSDAIQKLAKALTSPEVKAFIAKKYNGAVLPAF
>NZ_CP052861.1|WP_169372147.1|4203210_4204140_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MSFEAFGQPLLTFPDAEKSPLSIRAKALVFVDPRSRQLRQELEQLAPRAISVLIRGETGSGKELLARHIHRASDRGGLFVSVNCGAISPTYADAELFGYAAGSYAGSASSRAGWFGSANGGTLYLDEIGDLPLPIQIKLLAALENHEVTRVGAHQPSPVDVRLVAATSIDLAQAVAAGKFHERLYHYLSEGQLELPALRERVGDILSLAEYFLGIYSQRLDLPVPLISETAQHLLEAHSWPGNTRELENVIHFALLVSTGDEILPEHLNLPEAPPSLAQIERQLKQILANGTAAEQTALKQLLKNTALV
>NZ_CP052861.1|WP_169372148.1|4204193_4204775_-|alpha/beta-hydrolase
MRNESIRYLIVPGWQGSPEDHWQSHWQNSLPNSARVEQADWLTPRREDWVAALAEAIAADSTPVILIAHSLGCITVAHWAATAPVQFLRQVRGALLVAPADVERPACSPALRNFAPIPTTLLPFPSQVVSSDNDSAVSAPRAMELARNWGAEAGILAGAGHINVKSGHQRWEQGFAYLYRLQNRMEHHALRRA
>NZ_CP052861.1|WP_003220570.1|4205064_4205466_-|biopolymer-transporter-ExbD
MAFSTQDSDEVLSEINVTPLVDVMLVLLVVFIVTAPLLTNAIPINLPKTEAVAPVEQKDPLVVSIDGAGKLFINKDEIQPDLLEFNLKSAKAKDPEVRVQLQADDGVNYGEVARAMASIERAGITKLSVITAR
>NZ_CP052861.1|WP_169372149.1|4205467_4206193_-|MotA/TolQ/ExbB-proton-channel-family-protein
MTLLASPLESIEGAVIWLLVVFSVATWGLALLKGVQFGRLKAQDRKFHKQFWAASSLDSAAELSETQPGAAARVAQAGYAAIQVGETPATNDLSQAINHQDRLERALRQQIVRERRSLETGLAVVASIGSTSPFIGLFGTVWGIMEALKGISAAGSASLETVAGPIGAALVATGVGIAVAVPAVLVYNYFLRRLKLTAADLDDFAHDFYSLAQKSSFRLLIHPTSHKVVAQGSAQKVKEAS
>NZ_CP052861.1|WP_169372150.1|4206238_4207048_-|energy-transducer-TonB
MGNVQTAAGAHEVLWRQAPSGELVDLGRVPRVPLSQLRLQRAPKGILSRREAILLGVLALLVHGAVIYWVNQQPIKELPIVPPEIPPMTIEFSRPAPPVVEPPPPQPVQPVIEPPPPVEDELAVKPPPPKPIPKPKPVAKPVPKPAPKAVEQPPAPPQPTAPVAAPAPPAPPAPAPVTPASANAAYLKNPAPEYPSLAQRRGWEGTVLLRVHVLANGKPGEIQIQKSSGRDQLDEAALNAVKRWSFVPAKQGDVAQDGWVSVPIDFKIH
>NZ_CP052861.1|WP_054616563.1|4207410_4207737_-|hypothetical-protein
MSSINGTYVNDNAGAKLVITDGNDSNGTFSGTFSQGGVNYDVSYGHYHFQNSTGQPTTITFTGLNGSSGFQAWSLFSPDHNYKKVRAVGSRTNFDGEVVGLAGEFIKQ
>NZ_CP052861.1|WP_169372151.1|4207949_4210301_-|TonB-dependent-receptor
MSPLNLASPLSPRRLKRLPLALLLAGSAQAYAADTMTPEAAPAGKPTADSSQLETVTVTTRRREESSQDVPTPMSVVSGQALETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGLGNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEVLRGPQGTLFGKNTTAGVINISTRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDELAGRFSAYRTRSDGDIKNEFNGHDLNGGSREGFRGQLLFKPNESFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAAAGATLVNGSHRKVNLDNDQHVTVHQGGTSVEANWTLPSDFTLTSVSSYRWWNFTPRNDDGLNVPASYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYYFGSDLDNKSFSYYGPQADIWNGTPRGALANVNSVGNGHIETNSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVTRDAPVGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSGGVNLAVGSAPTAGADSLLIGTERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYDDVNRVQYLTNAGSVRSRGVEVESTIIPLRGLTLNLNGSFNDVSYLSYKDAPCPPEVSLRPGAPASCDLSGHQVVGASKWIGNANGEYKWNLSNGFEEYVTASYAFRSKAVGTVEDSDYGQIPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGVTGRYDF
>NZ_CP052861.1|WP_169372152.1|4210466_4211411_+|LysR-family-transcriptional-regulator
MHIDLRQLRHFIALADQRSFVAGALAVNLSQSAFSRSIQALEHSVGCQLVDRGRKDLAPTKQGQVLLEHARRLVSGAQQMANEISQFNGLEAGELRFGCGPAPAAGLIPRAIGSFIGRYPKARVQFQVDDWQSLSKRLLSEEFEFFVADTRYFEADPDYLTQRLRPRKWHFCCRAGHPLAGRESVSAAELMSYPMAVSIRPPNLRKVIVDLSGRPDFTPNVECENSHSLLSVVMRSDAIGIVGAYSDALHLAKGELVCLKIEGLADDLEELYTRYGIVSRAGYRLSPLAEAMIAQIKEIDAVDEEVCSLENLAV
>NZ_CP052861.1|WP_169372153.1|4211562_4213179_+|alkaline-phosphatase-family-protein
MPNTQNPVRNVLYIMCDQLRRDYLSCYGHPHLHTPNIDRLAAAGVRFSRAYTQGTICGPSRMSAYTGRYVSSHQVAWNAVPLPLEELTIGDYLRPHGIRTALVGKTHATPNLDALQRLAINPSSAQAEVLNEVGFEPYFRHDGIFPDDPLFDDKRESAPYTHYLRERGFDGRNPWHDWANAAEGDNGEILSGWKMRNAHLPARVPEQHSETVYTTDRAIDFIGEHGEQPWCLHLSYIKPHWPYIAPAPYHALYGAEQVIEPVRAEVGEESDHPVYHAFRQHEESLNFSRDEVRLNVVPTYMGLIKQVDDQLGRLFDFLQSNGRWDDTLIVFTSDHGDFLGDHYLGEKEFLLEPAVGIPLIVRDPRTAADVTRGSVDDRLVETIDALPTFLEALGLPSADHRLEGRSLIALLHGVKTDWRRYAISEYDYAFQAPARERLEQPIDRCRMTMVRSERWKYLAYDGFRPQLFDLLNDPQELKDLGANPAFAAVREEHAGYLFEWVRGLKRRTTISHEEIDLRGQRFRYGEPETEKLVHIGVW

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Crispr_ID: NZ_CP052861_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052861_4

5830455-5830557

Orphan

Consensus_repeat	Method
CGTTCCCACGCTCCGCGTGGGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052861_4

>merge|NZ_CP052861|4|5830455-5830557|CRISPRCasFinder
CGTTCCCACGCTCCGCGTGGGAATGCCGCCCGGGACGCTCCGCGTCCCTTCGTTGGCGTGACGCAGAGCGTCACAGGAAGCATTCCCACGCTCCGCGTGGGAA

>NZ_CP052861|4|4|5830455-5830557|CRISPRCasFinder
CGTTCCCACGCTCCGCGTGGGAA	TGCCGCCCGGGACGCTCCGCGTCCCTTCGTTGGCGTGACGCAGAGCGTCACAGGAAG
CATTCCCACGCTCCGCGTGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052861.1\|WP_074873964.1\|5814779_5816357_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP052861.1\|WP_169373254.1\|5830162_5830453_+\|PTS-transporter-subunit-EIIB	unknown	unknown	gnl\|CDD\|273920
NZ_CP052861.1\|WP_169373252.1\|5826351_5827575_+\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|367007
NZ_CP052861.1\|WP_169373262.1\|5836501_5836897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052861.1\|WP_169373260.1\|5835877_5836270_-\|protease-inhibitor-I42-family-protein	unknown	unknown	gnl\|CDD\|378179
NZ_CP052861.1\|WP_054045323.1\|5833642_5834386_-\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	unknown	unknown	gnl\|CDD\|273244
NZ_CP052861.1\|WP_169373256.1\|5832074_5832566_+\|tRNA-adenosine(34)-deaminase-TadA	unknown	unknown	gnl\|CDD\|223663
NZ_CP052861.1\|WP_169374298.1\|5819371_5822107_+\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|350195
NZ_CP052861.1\|WP_133840191.1\|5813210_5814680_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP052861.1\|WP_169373251.1\|5824606_5826256_+\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|274115
NZ_CP052861.1\|WP_169373259.1\|5835227_5835875_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
NZ_CP052861.1\|WP_169373258.1\|5834594_5835083_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052861.1\|WP_169373250.1\|5823129_5824572_+\|PTS-system-trehalose-specific-EIIBC-component	unknown	unknown	gnl\|CDD\|273916
NZ_CP052861.1\|WP_169373249.1\|5822188_5822893_-\|trehalose-operon-repressor	unknown	unknown	gnl\|CDD\|274116
NZ_CP052861.1\|WP_169373248.1\|5816532_5818605_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|132992
NZ_CP052861.1\|WP_169373257.1\|5832689_5833646_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
NZ_CP052861.1\|WP_169373255.1\|5830698_5832075_+\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
NZ_CP052861.1\|WP_169373263.1\|5837080_5839498_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP052861.1\|WP_169373253.1\|5827637_5830160_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP052861.1\|WP_169373261.1\|5836349_5836505_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP052861.1\|WP_074873964.1\|5814779_5816357_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP052861.1\|WP_169373254.1\|5830162_5830453_+\|PTS-transporter-subunit-EIIB	gnl\|CDD\|273920	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.88149e-09
NZ_CP052861.1\|WP_169373252.1\|5826351_5827575_+\|carbohydrate-porin	gnl\|CDD\|367007	pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.	6.239e-153
NZ_CP052861.1\|WP_169373260.1\|5835877_5836270_-\|protease-inhibitor-I42-family-protein	gnl\|CDD\|378179	pfam09394, Inhibitor_I42, Chagasin family peptidase inhibitor I42. Chagasin is a cysteine peptidase inhibitor which forms a beta barrel structure.	4.73659e-26
NZ_CP052861.1\|WP_054045323.1\|5833642_5834386_-\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	gnl\|CDD\|273244	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase. This tRNA methyltransferase is involved, together with cmoB, in preparing the uridine-5-oxyacetic acid (cmo5U) at position 34. [Unknown function, Enzymes of unknown specificity].	1.29608e-99
NZ_CP052861.1\|WP_169373256.1\|5832074_5832566_+\|tRNA-adenosine(34)-deaminase-TadA	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.92453e-62
NZ_CP052861.1\|WP_169374298.1\|5819371_5822107_+\|DUF2726-domain-containing-protein	gnl\|CDD\|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.21727e-24
NZ_CP052861.1\|WP_133840191.1\|5813210_5814680_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP052861.1\|WP_169373251.1\|5824606_5826256_+\|alpha,alpha-phosphotrehalase	gnl\|CDD\|274115	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.	0
NZ_CP052861.1\|WP_169373259.1\|5835227_5835875_-\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	2.03691e-35
NZ_CP052861.1\|WP_169373250.1\|5823129_5824572_+\|PTS-system-trehalose-specific-EIIBC-component	gnl\|CDD\|273916	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component. This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.	0
NZ_CP052861.1\|WP_169373249.1\|5822188_5822893_-\|trehalose-operon-repressor	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	1.97329e-117
NZ_CP052861.1\|WP_169373248.1\|5816532_5818605_-\|TerD-family-protein	gnl\|CDD\|132992	cd06974, TerD_like, Uncharacterized proteins involved in stress response, similar to tellurium resistance terD. Tellurium resistance terD like proteins. This family is composed of uncharacterized proteins involved in stress response, such as the tellurium resistance proteins, chemical-damaging agent resistance proteins, and general stress proteins from a variety of organisms. The tellurium resistance proteins are homologous terA,-D,-E,-F,-Z,-X gene products, which confer tellurium resistance mediated by plasmids. Currently, the biochemical mechanism of tellurium resistance remains unknown. The family also contains several ter gene homologues, YceC, YceD, YceE, for which there is no clear evidence for any involvement in the tellurium resistance. A putative cAMP-binding protin CABP1 shows a significant similarity to the terD protein and is also included in this family.	6.4544e-17
NZ_CP052861.1\|WP_169373257.1\|5832689_5833646_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
NZ_CP052861.1\|WP_169373255.1\|5830698_5832075_+\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.03742e-93
NZ_CP052861.1\|WP_169373263.1\|5837080_5839498_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP052861.1\|WP_169373253.1\|5827637_5830160_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0

>NZ_CP052861.1|WP_169373254.1|5830162_5830453_+|PTS-transporter-subunit-EIIB
MFEKMQRAFWKALTPDLVVDEPKQVVQPVTGLATDIVAALGGVDNLKSQQPVALTRVRVELRDVGRVDRQALNVAGVPGFMMLEDGVVHLITGLPQ
>NZ_CP052861.1|WP_169373253.1|5827637_5830160_+|phosphoenolpyruvate--protein-phosphotransferase
MATPQHLQLLAPLSGVLMPLDQVPDPVFASRVIGDGLCIDPTSQTLLAPLAGVISNVQASGHAVSITDDNGVQVLMHIGLDTVNLAGKGFTRLVEEGQRVEAGQALIEFDADYIALHARSLLTLMLVVSGEPFTWLVPETGLVDIGQPLLGLNTAGQATEEMVVEEGDALFSKPVTLANPNGLHARPAAVFAQAAKGFSASIYLHKQQQSANAKSLVAIMALQTAHGDVLQVSAAGADAEAAIKTLAELLVAGCGETVAAVVAPETVSKLTVLRGVCASAGSAFGQVVQITEQTLDVSEFGKGAQAEGAILSRALLAALGDLQQLRDNATSDAQAEIFKAHQELLDDPSLLDQAETLIREGKSAGFAWRATTEATAAHFKSLGNALLAERAADLADVGQRVLKQILGVQDRALELPDGAILIAEQLTPSQTAGLDTRKVLGFATVGGGATSHVAILARAAGLPAICGLPVHVLTLADGTQVLLDADKGELHLDPDLAAIEQLQANRQQQQKRQQHELAHASLAACTRDGHHIEVTANVASLAETEQAMTLGGEGVGLLRSEFLYLERNHAPSHDEQASTYSAIARALGPNRNLVVRTLDVGGDKPLAYVPMDSETNPFLGMRGIRLCLERPQLLRDQFKAILSSAGLARLHIMLPMVAQLSELRQARQLLEEEALALGLTELPKLGIMIEVPAAALMADLFAPEVDFFSIGTNDLTQYTLAMDRDHPRLASQADSFHPSILRLIASTVKAAHAHGKWVGVCGALASETLATPLLLGLGIDELSVSVPLIPAVKAAVREVDLVDCQAIAQQVLGLESAEQVREALRLYHEATVDTSLVLEN
>NZ_CP052861.1|WP_169373252.1|5826351_5827575_+|carbohydrate-porin
MKTTINRSLVAAGVCLAFPLSAQALEFAGYVRSGVGTSTNSGKQQCFQLPGAQTKYRLGNECEQYAELELRQDLYTLDDGSVLSVDGMASLYNQYDKDLTFNGDNGSVRMPQMYAQWSNMPSLNGGSLWAGRRYYKRNDIHISDFYYWNQSATGGGIEDVLIGDLKYSYAYSRKDNLYQKDYINRHDFNVAGFDTNPGGELELGLSYIDKPDSRDAHRGWAVTAQHVQKGFLGGKNKLAFQYGEGPGTGLGYTGNVQLDDRSKSYRVVEFFDWQVTPRFGGQIEAVYQKDIRPDGADQNWLSLGVRPAYAITEQFKLVTELGHDQVEAPGGTRKLSKFTFAPTWSPKGPEFWARPEVRLYYTYASWNEAAKRAANELAAGSALSDTGAFGTARHGSNVGMQVEYWWK
>NZ_CP052861.1|WP_169373251.1|5824606_5826256_+|alpha,alpha-phosphotrehalase
MQDWQRSVIYQIYPKSFHSHAGNPTGDLLGVVAKLDYLHWLGVECLWITPFLRSPQRDNGYDISDYYAIDPSYGTMADCELLIAEAGKRGIKLMLDIVVNHTSIEHKWFQQARSSLDNPYRDFYIWRDQPNNWESKFGGSAWEYEAQTGQYFLHLFDHTQADLNWDNPKVRAEVFKMMRFWRDKGVGGFRLDVINLISKPADFPEDNSDGRRFYTDGPNVHEYLQQMHREVFEGHDLINVGEMSSTSLEHCIRYSRPESKELSMTFNFHHLKVDYPNLQKWIRADFDFLQLKRILSDWQTGMQAGGGWNALFWCNHDQPRVVSRFGHDGEHRQVSAKMLGTALHFLQGTPFVYQGEELGMTNPGFDHIDQYRDVETLNIHRLQRDAGVSDADNMAAIMQKSRDNGRTPMHWNAEPNAGFSVAEPWIRVPANAAQINVASQLDDPDSVLHHYRQLIALRRNEALMSDGVYRQLLAEHTQIWAYTREGQDERLLVLNNFYGTTCEVELPEEVISEAMTQRLVISNYPDCPPRNRQVFLRPFESFVLHLTNH
>NZ_CP052861.1|WP_169373250.1|5823129_5824572_+|PTS-system-trehalose-specific-EIIBC-component
MSHDYPNIASELLVSLGGSDNLEQAAHCVTRLRLALKDPSLVNSATLNQIDLVKGSFFTGGLFQVVIGPGEVEKVYAELRRQTGLAASTIADVKQKSADKINAMQRLVRVFSDVFMPILPALIIAGLLMGINNLIGAKGMFIEGKTLLDAYPSLDGIWSLINLMANTSFVFLPALVGWSAAKRFGGSEILGIVLGLMLVHPDLLNAWNYGKAVAGLDGQSLPYFDIFGWFKIEKVGYQGQILPILLAAYVMSVIEKWLRARVPNAVQLLVVPITTIVVTGVLALAVIGPVTRHLGILITEGVVTLFDLAPMVGGAIFGMLYAPLVITGMHHMFLAVDLQLISTQGGTFIWPMIVMSNLAQGSAALAVFYMTRNVRDKSMASTSAISAYFGITEPAMFGVNLRYKFPFYSALIGSALGCIFLSMNKVQASAIGVGGLPGFISIIPQFIPMFVIGMIIAMVVPFVLTCGLSMKIVRPGYRVA
>NZ_CP052861.1|WP_169373249.1|5822188_5822893_-|trehalose-operon-repressor
MSKYNQIYTDLLASITTERLERGARLPSETELMDSYQASRGTVRKAIEQLQERGFAQKVHGKGTFVLSTNPIEFQLGGIVSFQETYPRLGNDVSTEVVEFDQIPLEGALLEHIQAEAGSLITRIKRVRRIDGKRVILDINHFVSDVIPGLSREIAEQSIYAFIEQTLQLQIAYAQRTIEAVPRGKDDQLLLDLDGQSHVIVVSNQTFLQDGRQFEYTESRHTLDKFYFSDVARR
>NZ_CP052861.1|WP_169374298.1|5819371_5822107_+|DUF2726-domain-containing-protein
MVSIYVCGEDKTRQISDWVIKNDKSEGLSLTCHFPSGKHFFRPLADCKVDPTRELQDTLLRRKGSSVLNPVEKVVIYGEKYAVVQYPGKTTKYVFKMDTIELVAPTKMKDESTFRYFLSVANGRVEQAASPNDKTIAENVLRQLNAILPSSNTALHAYCTGQNRRQEQAGNFIFPFGLNESQLKAVEQAFTSQISLIEGPPGTGKTQTILNIIANILLHGKTVAVVSNNNPAVSNVCEKLGKSGLDYLVAKLGNEKNRKAFFDNPRSRPTAIAETAPSMEHIQSILQRLKRHLSGRNAVAQLQIEISELEIERSYLRQWQQDNGVQDSVALGKYNLSPQKSADLMAYLTHLAGKRVRIKDRIEMLFNFKILRMKPFDDWAKRKSVFYGLQLHYYDKALLERKAALASHQDALRLGNYEALLEELTSASMTYLKQYLHQHAPSAECFDAKTYRQDKFDEFLKRYPVIASGTHSIVNSLKPGAVLDYVIIDEASQQDIVPGILALGCAKNLIIVGDRKQLAHIPAKLGRAAPEDQGHYDCEKYSLLDSCVSVFNDSIPMTLLKEHYRCHPQIIQFCNQQFYANQLVPMTQDRGEKPLSLLVTAKGNHTRYKTNLRELDSLLAVLEGEGESAWEGGDGRGFIAPFKNQAALSGTLLPDDFVKDTVHKFQGRECDEIVFSTVLDKKSITPRLLAFVDDPRMVNVAVSRAKNRFTLVTGDEVFTASNGHIAALVRYIEYYAQEGQLHRAPVISAFDLLYKEYDQSLERLNGRLRRSDSEYKSEQIVAQLLREALDQPAFQGITFHSQIALNQLASIANPSLTAREQAFMSQGASCDFVLYYTVGKKPLGIIEVDGGSHGEADQAERDALKNSILQKCDIPLLRLRTIESHIEEKLAAFLAQWTRNVHDENRELSMV
>NZ_CP052861.1|WP_169373248.1|5816532_5818605_-|TerD-family-protein
MNQELFLRRRTRVHVPMGTGGATRAQVASAVREVAAFRCVLSEPLIEQLGRLSPTELKHWLREIVRVLRRENGAHVHHRPFYPDFPEQVLTASEAELYLNAVMHYLTLRRLPPSEHSRPAMLEGNFISRVIEPGSVAEFESLLEPLVSSRTSLSEQETADVVWFVREYKSDVFRLLPEVVPFREIRAQLGGALIQHVANDARVDAFLERNVETATDVLRLAVALNGGDVSLATASTRFTAMKRSMRRLLLRLLDHIPNATEDVMRHVERWKRLAEVLHPGDYADKYPQALAAITAARHNEAPASFGSRVETLFAQRHIATLTLILQSRPGEFARRLDATLRRATEPEPVLDAFEAVATQVSSPVLLQLLAQVRAPRPLPLRAFTPKGSFAKIYGIKDRREPLAPDVLARAARICEDALVMRFASLPPLGRCFIDPALSEYKVPLAQRASSKSLRTLVRGSRLHMPDTRFIRLFLWWKNGRERTDIDLSAAFFDANFVFTQTVAYYNLKDFGGYHSGDIVDAPNGAAEFIDLDLDVLVEKGIRYVVTSINSYTEQPYCDLPECFAGWMARADAASGEVFEPRSVVDRIDIASDTVICLPFVMDLQERRMIWADLGLTSSPRWNNVGNNLSGISLMLRALVHTPRPDLETLFDLHVRARGERVASPQQAQAVFAPDQGITPFDTDLIRSQFL
>NZ_CP052861.1|WP_074873964.1|5814779_5816357_+|glutamine-hydrolyzing-GMP-synthase
MALDIHAHRILILDFGSQYTQLIARRVREIGVYCELHPFDMDDEAIREFAPKGVILAGGPESVHVADSPRCPQAVFDLGVPVFGICYGMQTMAEQLGGKVEGSELREFGYARVDVVGKSRLLDGIEDHIDADGLFGLDVWMSHGDKVTKMPQDFHILASTPSCPIAGMFDDARGYYGVQFHPEVTHTKQGGRILSRFILDICGCEALWTPSKIAEDAIANIRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMFAENMGVKVIRANAEDQFLDNLAGESDPEKKRKIIGRTFIDVFDAQSNKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRRLGLELGLPYDMVYRHPFPGPGLGVRILGEVKKEYADLLRRADHIFIEELRKADWYHKVSQAFVVFQPVKSVGVVGDGRRYAWVVALRAVETIDFMTARWAHLPYELLETVSGRIINEIEGISRVTYDVSSKPPATIEWE
>NZ_CP052861.1|WP_133840191.1|5813210_5814680_+|IMP-dehydrogenase
MLRISQEALTFDDILLVPGYSEVLPNEVSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMTIEQQAAEVRKVKRYEAGVVKDPITIEADATVRELFELTRMHNISGVPVLHDGDLVGIVTSRDVRFENRLDATVREVMTPKERLVTVKEGADKNDVRELLHKNRIERVLIVDDKFALKGMMTVNDIEKAKAYPLASKDDQGRLRVGAAVGTGKDTGERVSALVAAGVDVVVVDTAHGHSKGVIDRVRWVKQNFPDVQVIGGNIATGAAAKALVEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGSGVPLIADGGIRFSGDLSKAIVAGASCVMMGSMFAGTEEAPGEIELFQGRSYKAYRGMGSLGAMSQAQGSSDRYFQDSSAGAEKLVPEGIEGRVPYKGTLSAIIHQLMGGLRSSMGYTGSADIEEMRTKPEFVRITGAGMAESHVHDVQITKEAPNYRVG
>NZ_CP052861.1|WP_169373255.1|5830698_5832075_+|multicopper-oxidase-family-protein
MSFTRRQILGGLAGLVVVGVGAGGASRYWLGKMADADAGHDYELIAAPLDVELVAGHKTEAWAFGPSAPGTELRVRQGEWLRVRFINHLPVATTIHWHGIRLPLEMDGVPYVSQLPVLPGEYFDYKFRVPDAGSYWYHPHVNSSEELGRGLVGPLIIEEREPTGFKYEKTLSLKSWHVDEEGAFVAFSIPREAARGGTAGRLSTINGVPQAVIDLPAGQITRVRLLNLDNTLTYRLNIPGVEAQIYALDGNPIEPRPLGKEYWLGPGMRICLAIKAPPAGEELSLRNGPVRVGTFRSVANSDAATQWPPALPANPVAEPDLANAEKLNFNFEWVGSVSVNVDNGKPPSLWQINGKAWDITDKTCADRPIAKLEKGKSYIFELKNMTQYQHPIHLHGMSFKVIASNRHKVIPYFTDTYLLGKNERAQVALVADNPGIWMFHCHVIDHMETGLMAAIEVA
>NZ_CP052861.1|WP_169373256.1|5832074_5832566_+|tRNA-adenosine(34)-deaminase-TadA
MRQIRPAAIIDRSRDQDFMREALALAAQGAALGEVPVGAVLVQDGEIIGRGFNCPISGNDPSAHAEMVAIRAAATAASNYRLPGSTLYVTLEPCSMCAGLIVHSRIARVVYGALEPKAGIVQSQGQFFTQGFLNHRVLFEGGVLAEECGTVLSEFFKARRATR
>NZ_CP052861.1|WP_169373257.1|5832689_5833646_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDLSPLARRLAGTPLADWANTLQAQLDKKMEKGHGDLERWQSALDALPKIQPSEVDLLNGLTLDTDCDDETRAQMRTALMGLSPWRKGPFDLFGVHVDTEWRSDWKWSRVAPHLDLKGKRILDVGCGNGYYMWRMLGAGADSVIGVDPNWLFFCQFQAVQRYLSEPNAWHLPFPFEDLPPNMEGFDTVFSMGVFYHRRSPIEHLLSLKDCLVKGGELVLETLVIEGDQQQVLVPEDRYAQMRNVWFLPSVPALELWLRRAGFSDVRCVDVSVTTVEEQRGTEWMKYQSLSDFLDPEDHSKTIEGLPAPMRAVIVARK
>NZ_CP052861.1|WP_054045323.1|5833642_5834386_-|carboxy-S-adenosyl-L-methionine-synthase-CmoA
MSKEPDRLFAQPLAQVPDFAFNEDVVRVFPDMIKRSVPGYPTIVENLGVLAAQFAQPNSVLYDLGSSLGAVTQALRRHVRTDGCRVIAVDNSAAMVERCREYLNGQDSMFQELLPVEVIEGDILALEFQPASVVALNFTLQFIAPEQRTALLSRIRQSLLPGGALILSEKLRFNDLEEHALLTDLHVAFKRANGYSELEIAQKRSAIENVMKPDSLEEHRERLLAAGFSKVVPWFQCLNFASLIALP
>NZ_CP052861.1|WP_169373258.1|5834594_5835083_-|hypothetical-protein
MSFFKSKNAIAGVEPVITVSAETVAKVSNRVNFNTQIVEFDADTNSNLIALVSRANTQDYSHRSKKGLVLIFDKNINSGTYSVTDQDFPFDQAYYFETGTIPGLTTSFEYEPKSGSFNVEVIQNTPEKLHYQISFDFKGVDKRNEELKVVGTSTFIVLMRPV
>NZ_CP052861.1|WP_169373259.1|5835227_5835875_-|lysoplasmalogenase
MGWLILALMGAVTFLYGVSVHAALLCLLVKPLPVLALLGWLHDAPPTEYRRWISLGLIFSLLGDVLLAWPGDLFVFGLGAFLVAHLAYLKAYLSDCRRVAVLPLIIALGIGAVLLGILISNGLGPLLIPVIVYGLAISAMLWRALARLGTDVPKRSALLAAAGAVAFVLSDTVIGINRFVSPFNAAPYIIILSYWLGQWGIAASAFTSKTNNNNN
>NZ_CP052861.1|WP_169373260.1|5835877_5836270_-|protease-inhibitor-I42-family-protein
MSPTRLLVPLALALLAGCASQQNQNVSVEKQSECPAKMTKGQNLILTLPSNPTTGYRWAIQDSAGGVLRALSPEVYSNPEDAGIVGSAGISTWRFQSFATGTGRLRLTYSQPWAPEVPAVKTFDCAISVN
>NZ_CP052861.1|WP_169373261.1|5836349_5836505_+|hypothetical-protein
MIVPVQANHSNPGFNQLGVQRKNEVSFCLEVFAVTDTGLKEVRVGSISEVA
>NZ_CP052861.1|WP_169373262.1|5836501_5836897_-|hypothetical-protein
MSDNKSSTRVARDEFNANFSGGIIVVRAPHLYDDGTHFQISATDFDTIYHPQFFIRIAKSTLNGPHPFQPGINISHFTYSENYGFLINAVSGVYEVDFNLPTKKYYMKFNLVFQPQMSPIVISGDFTLHGD
>NZ_CP052861.1|WP_169373263.1|5837080_5839498_-|endopeptidase-La
MSDQQEFPEDPSEYAETDHIEHHSTGKGLALPGQNLPDKVYIIPIHNRPFFPAQVLPVIVNEEPWAETLDLVSKSDHHSLALFYMDTPQEDPRHFNTDALPQYGTLVKVHHASRENGKLQFVAQGLTRVRIKTWLKHHRPPYLVEVEYPHQPTEPTDEVKAYGMALINAIKELLPLNPLYSEELKNYLNRFSPNDPSPLTDFAAALTSATGGELQEVLDCVPMLKRMEKVLPMLRKEVEVARLQKEISAEVNRKIGEHQREFFLKEQLKVIQQELGLTKDDRSADIEQFEQRLEGKVLPPQAQKRVEEEMNKLSILETGSPEYAVTRNYLDWATSVPWGVYGEDKLDLKHARKVLDKHHAGLDDIKDRILEFLAVGAYKGEISGSIVLLVGPPGVGKTSVGKSIAESLGRPFYRFSLGGMRDEAEIKGHRRTYIGAQPGKLVQALKDVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDLRLDLSKVLFVCTANTLDSIPGPLLDRMEVIRLSGYITEEKIAIAKRHLWPKQLEKAGVSKGSLSISDSALKALIDGYAREAGVRHLEKELGKLVRKAVVKLIDEPKAVIKIGPKDLEASLGHPVFRNEQVLSGTGVITGLAWTSMGGATLPIEATRIHTLNRGFKLTGQLGDVMKESAEIAYSYVSSNLKSFGGDPKFFDEAFVHLHVPEGATPKDGPSAGVTMASALLSLARNQAPKKGIAMTGELTLTGHVLPIGGVREKVIAARRQKIFELILPEPNRGSFEELPDYLKEGITVHFAKRFADVAKILF

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Crispr_ID: NZ_CP052861_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052861_5

6879053-6879150

Orphan

Consensus_repeat	Method
CGTTCCCACGCGGAGCGTGGGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052861_5

>merge|NZ_CP052861|5|6879053-6879150|CRISPRCasFinder
CGTTCCCACGCGGAGCGTGGGAATGCCTCAATGGACGCTCCGCGTCCGCTTTGGGACGCGGAGCGTCCCGGGCTGCATTCCCACGCGGAGCGTGGGAA

>NZ_CP052861|5|5|6879053-6879150|CRISPRCasFinder
CGTTCCCACGCGGAGCGTGGGAA	TGCCTCAATGGACGCTCCGCGTCCGCTTTGGGACGCGGAGCGTCCCGGGCTG
CATTCCCACGCGGAGCGTGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052861.1\|WP_169373968.1\|6874289_6875204_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|225313
NZ_CP052861.1\|WP_169373965.1\|6869615_6870653_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP052861.1\|WP_169373966.1\|6870656_6871787_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NZ_CP052861.1\|WP_169373975.1\|6881633_6883025_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
NZ_CP052861.1\|WP_169373969.1\|6875225_6875774_-\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NZ_CP052861.1\|WP_169373964.1\|6868441_6869266_+\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349
NZ_CP052861.1\|WP_169373980.1\|6888295_6889342_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_CP052861.1\|WP_169373967.1\|6871997_6874037_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
NZ_CP052861.1\|WP_169373981.1\|6889360_6890476_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP052861.1\|WP_169373982.1\|6890472_6891828_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273584
NZ_CP052861.1\|WP_169373974.1\|6880297_6881623_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225180
NZ_CP052861.1\|WP_169373978.1\|6885494_6886820_-\|protein-kinase	unknown	unknown	gnl\|CDD\|275380
NZ_CP052861.1\|WP_169373973.1\|6879153_6880029_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132382
NZ_CP052861.1\|WP_169373976.1\|6883075_6884470_-\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NZ_CP052861.1\|WP_169373977.1\|6884702_6885410_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP052861.1\|WP_169373972.1\|6878182_6879046_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132382
NZ_CP052861.1\|WP_169373979.1\|6886905_6888018_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|281902
NZ_CP052861.1\|WP_169373970.1\|6876012_6876840_-\|phosphonoacetaldehyde-hydrolase	unknown	unknown	gnl\|CDD\|184075
NZ_CP052861.1\|WP_169373963.1\|6866342_6868214_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NZ_CP052861.1\|WP_169373971.1\|6876963_6878073_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076

Protein	Function_ID	Function_description	E-value
NZ_CP052861.1\|WP_169373968.1\|6874289_6875204_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|225313	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism].	3.7222e-37
NZ_CP052861.1\|WP_169373965.1\|6869615_6870653_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.13048e-40
NZ_CP052861.1\|WP_169373966.1\|6870656_6871787_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	2.38971e-20
NZ_CP052861.1\|WP_169373975.1\|6881633_6883025_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	0
NZ_CP052861.1\|WP_169373969.1\|6875225_6875774_-\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	1.83008e-50
NZ_CP052861.1\|WP_169373964.1\|6868441_6869266_+\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	5.71657e-72
NZ_CP052861.1\|WP_169373980.1\|6888295_6889342_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.01233e-67
NZ_CP052861.1\|WP_169373967.1\|6871997_6874037_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
NZ_CP052861.1\|WP_169373981.1\|6889360_6890476_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.9973e-60
NZ_CP052861.1\|WP_169373982.1\|6890472_6891828_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|273584	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines].	1.20107e-27
NZ_CP052861.1\|WP_169373974.1\|6880297_6881623_+\|MFS-transporter	gnl\|CDD\|225180	COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism].	1.6805e-122
NZ_CP052861.1\|WP_169373978.1\|6885494_6886820_-\|protein-kinase	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	9.23182e-22
NZ_CP052861.1\|WP_169373973.1\|6879153_6880029_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|132382	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). [Regulatory functions, DNA interactions].	6.69169e-142
NZ_CP052861.1\|WP_169373976.1\|6883075_6884470_-\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	1.64854e-101
NZ_CP052861.1\|WP_169373977.1\|6884702_6885410_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	2.45695e-108
NZ_CP052861.1\|WP_169373972.1\|6878182_6879046_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|132382	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). [Regulatory functions, DNA interactions].	8.38882e-111
NZ_CP052861.1\|WP_169373979.1\|6886905_6888018_-\|cell-division-protein-ZapE	gnl\|CDD\|281902	pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop motif-containing family of proteins includes AFG1, LACE1 and ZapE. ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein with an ATPase motif typical of the family. LACE1, the mammalian homolog of AFG1, is a mitochondrial integral membrane protein that is essential for maintenance of fused mitochondrial reticulum and lamellar cristae morphology. It has also been demonstrated that LACE1 mediates degradation of nuclear-encoded complex IV subunits COX4 (cytochrome c oxidase 4), COX5A and COX6A, and is required for normal activity of complexes III and IV of the respiratory chain. ZapE is a cell division protein found in Gram-negative bacteria. The bacterial cell division process relies on the assembly, positioning, and constriction of FtsZ ring (the so-called Z-ring), a ring-like network that marks the future site of the septum of bacterial cell division. ZapE is a Z-ring associated protein required for cell division under low-oxygen conditions. It is an ATPase that appears at the constricting Z-ring late in cell division. It reduces the stability of FtsZ polymers in the presence of ATP in vitro.	2.57284e-94
NZ_CP052861.1\|WP_169373970.1\|6876012_6876840_-\|phosphonoacetaldehyde-hydrolase	gnl\|CDD\|184075	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional.	3.07029e-170
NZ_CP052861.1\|WP_169373963.1\|6866342_6868214_+\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	4.99455e-85
NZ_CP052861.1\|WP_169373971.1\|6876963_6878073_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0

>NZ_CP052861.1|WP_169373972.1|6878182_6879046_+|LysR-family-transcriptional-regulator
MNLFQLRAFDAVAREGSFTRAAARLFISQPAVTGHIKALEEHYQITLLRRTARRVELTEEGTKLAAITRAMFGLAEEAQVMLEANRQLLTGRLEVAADGPHMVMPMLASLRARYPGITVNLRLGNAQETLAALLSEHADVAVLTEVEPRKGLHLQALSESRICALVPAGHPWAQRAKGVPLKELDQVIMVLREPSSITRRTFDDACSQAKINPRVLLELDSREAVTEAVAAELGVGVVSSVEVSHDPRVVAVPIIGEGLINRHMIGCMERRRELRLIQAFFDLAPST
>NZ_CP052861.1|WP_169373971.1|6876963_6878073_-|2-aminoethylphosphonate--pyruvate-transaminase
MSTAEPILLTPGPLTTSARTRQAMMVDWGSWDDRFNQLTASLCEQLLTIINGTDTHHCVPLQGSGTFAVEAAIGTLVPRDGKVLVLINGAYGKRLAKICEVLGRPFSTFETAEDEPTTAADVDRLLRADPSITHIALIHCETSTGILNPLPEIAQVIAQHGKRLIIDAMSSFGALPIDAQQVPFDALIAASGKCLEGVPGMGFVFARKESLANAGGNSHSLAMDLFDQHTYMAKTGQWRFTPPTHVVAALHEALLQYNEEGGLPARHQRYANNCQVLLDDMAQLGLRSFLPAAIQAPIIVTFHAPKDPRYQFKEFYERVKAKGFILYPGKLTQVETFRVGCIGHVNPPEMHAAVAAIAEVLREMEVIEI
>NZ_CP052861.1|WP_169373970.1|6876012_6876840_-|phosphonoacetaldehyde-hydrolase
MNYANPSKLQAAILDWAGTVVDFGSFAPTQIFVEAFAEFDVQVSIEEARGPMGMGKWDHIRTLCDQPQVAERYRKAFGRTPTDDDVTAIYKRFMPLQIEKIAEHSALIPGALETIANLRQQGIKIGSCSGYPKQVMDKVVELAATNGYVADHVVATDEVPNGRPWPAQALANVIALGIDDVAACVKIDDTVPGILEGRRAGMWTVALICSGNALGLDYAGYQALGSEELASERKRIHGMFEGSRPHYMIDTITDLPQVIADINKRLANGEMPQSS
>NZ_CP052861.1|WP_169373969.1|6875225_6875774_-|cytochrome-b
MPWKNSDSRYSTVSITLHWLMLVLLALVYACIEFRGVFPKGSGGRTLITESHFMLGLTVFVLVWLRLFARSLGPAPQIFPASPRWQTTLAKLMHWALYLFMIAMPILGWLVTSAKGHQVMFYGFDLPLLVSEDKALAKRIQGWHELGGTIGYWLIGLHAVAGLYHHYVVGDNTLLRMMPKRG
>NZ_CP052861.1|WP_169373968.1|6874289_6875204_+|pyridoxal-phosphate-dependent-enzyme
MLSPPNFWLPQAPLSPLHLDWLTAAGIEVAILRLDQIDPLISGNKWFKLIEHLHAADQAGADGIISLGGAHSNHLHALAAAGKRFGFNTVGLLRGHPHDTPTVKDLQDFGMQLHWLGYGGYRARHEAGFWLPWQAQYPTLHPVPEGGGGLRGAQGCMQLRDQVREQLNGLGWDDYDGWWLACGTGTTLAGLVLAEAGEHLVYGALAVPDDHGVAQQVEAIVGGAEPAYALFEASRGGFAKVDSLLTEFIEQTEQVSGIPLEPLYTGKALLALKQHVEAGRFAHGTRLIFIHTGGLQGRRGFNIP
>NZ_CP052861.1|WP_169373967.1|6871997_6874037_+|NADPH-dependent-2,4-dienoyl-CoA-reductase
MAAAHYPHLLAPLDLGFTTLRNRTLMGSMHTGLEEKPGGFERMAAYFAERARGGVGLMVTGGIGPNDEGGVYSGAAKLTTEEEALKHQIVTRAVHEAGGKICMQILHAGRYAYSPKQVAPSAIQAPINPFKPKELDEEGIEKQISDFVTCSKLAQVAEYDGVEIMGSEGYFINQFLAAHTNHRTDRWGGSYENRMRLPVEIVRRVREAVGPNFIIIFRLSMLDLVEGGSSWEEIVTLAKAIEQAGATIINTGIGWHEARIPTIATKVPRGAFSKVTAKLRGSVSIPLITTNRINTPEVAEQILAEGDADMVSMARPFLADADFVNKAAAGRADEINTCIGCNQACLDHTFGGKLTSCLVNPRACHETELNYLPVQQIKKIAVVGAGPAGLSAATVAAERGHQVTLFDSASEIGGQFNIAKRVPGKEEFFETLRYFNRKLQTTNVEVCLNTRVDVAQLVAGGYDEIILATGIAPRTPAIPGVENAKVLSYLDVILERKPVGKRVAVIGAGGIGFDVSEFLVHEGVATSLDRAAFWKEWGIDTHLEARGGVAGIKAQPHAPAREVFLLQRKTSKVGDGLGKTTGWIHRTGLKNKQVQMLNSVEYLKIDDEGLHIRIGETGEPQVLAVDNIVICAGQDPLRELQDGLVAAGQNVHLIGGADVAAELDAKRAINQGSRLAAEL
>NZ_CP052861.1|WP_169373966.1|6870656_6871787_-|carbon-nitrogen-hydrolase-family-protein
MRKLLYLTFSMALIAALTTYAMWAADRPVGHYLSDLRINLAVDQGTPADRGNLLGIQPELFPTDYQSPERLHRKLAAYLQKAQDQGLLNDKTIVVLPEHVGTWLMVSGEKDELYQASTLKEAMNWLAASNPLQFVRALISAKGASRLDDAHLRMKAKSMAKDYQALFGGLAKEFHVTLVAGSIVLPEPSVRDGSLKIGHGALFNSTVVFGRDGVPIGQPQRQMHPIFAEQDTLAANTDHTVNVIDTPAGRLGILIGSDSWYPDNYRKLDDQGAQLVAVPAFVVGRGTWDKPWRGYKGLSTPGSVSLKAGELSEGQAWHRLTLIAQPPSSQAIAGMSVFLRGQFWDKGSAGQSFLSNNGQHSADGNERGARMLNLWL
>NZ_CP052861.1|WP_169373965.1|6869615_6870653_-|AraC-family-transcriptional-regulator
MKPLPMRLGDLSVGFVHSLADAVHSHGADPQPLLEQYGLDAARLGEAGARLSIPRYMRLGHGAIQLTGDPALGLRMGQLSRLSQAGLAGVTAAQAPTVREAARCLIRFEALYGSNYRGQSSFHEDVRGAWLRFYSISPYNAYNRFVVDSIIAGWLQQLSSVSPAPLRAERIEIEFEEPLYREAYSVFDCPIQFGAEHNQLRLSLNALAQRNPQHCPSTWRHLLQLCERELEQLTRTRSLRERITQLLGPLLNGGREPDLEEVAARLKLPTWTLRRKLAEEGTQFRAILNDTRRDLAMTYIRDTELAFGEIAYLLGFASAEAFQRAFKRWNGQTPGEFRRSHRQSA
>NZ_CP052861.1|WP_169373964.1|6868441_6869266_+|DUF2242-domain-containing-protein
MFRSIPMRIVGLALVLAVAAGCSSKKAAIYEHENFDDSGTFSRSYPVTDAQTCEAARRALLSQGYIITSSDPKLVSGHKSFQQTGETHMEISFSVVCADDGSEGHHATMFANALQDRYALKKTNNSASLGVGVLGSVSMPIGSSDDSMVKVASETVSSAKFYERFFTLVELFLPPEAKKAAHIVEKPKTDLGVPEAKAAPAPLVPTPAPAPAAEPVAAPAPVEAAPAASEPVTPPAESAPITPVESSEPAPAETITPPSHPDNMPPPSEPIPAQ
>NZ_CP052861.1|WP_169373963.1|6866342_6868214_+|peptidylprolyl-isomerase
MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFQATTHSNDAAKVNGEEISQNELSQAVDMQRRQLMQQLGKDFDASLLDEKMLRESALKGLIDRKLLLQGAEKSKFAFSEAALDQVILQTPEFQADGKFSPERFDQVIRQLGYSRMQFRQMLAQEMLIGQLRAGLAGSGFVTDAQVLAFARLEKQTRDFASLPIKVDPSAVKLTDDEVKAYYDEHAKEFMTPDQVVIDYLELKKASFFDEVSVKDEDLQAAYQKETANLAEQRRAAHILIEVNDKVTEAQAKAKIEEVQARLAKGEKFEALAKEFSQDPGSANNGGDLGYAGPGVYDPAFEKALYSLNKDQVSEPIRTDFGFHLIKLLGVEAPEVPTFASLKGKLTRELKTQQVEQRFVEATKQLEDSSFEASDLAQPAQDLKLTVHTSAPFGREGGEGVAANRAVVTAAFSPEVLDEGANSTAIELDPETVIVLRAKEHLKPAQLPLESVAASIRTQLAKEHASAAAKTQADQLIASLRDGKTPLDKAIDGQNWKVTAAATRAQEGVDPTVLQALFRMPKPAAKDKPTFSSVTLADGSLVIVRLNGVNEAAAPTDEEKAQYRRFLASRIGQQDFAAYRKQLESEADIKRF
>NZ_CP052861.1|WP_169373973.1|6879153_6880029_-|LysR-family-transcriptional-regulator
MSVSHAQLKAFHAVAVHGSFTKAAERLFLTQPAISDQVRKLEERFGVLLFHRNKRSVRLTDLGERLLSITQRLFVIEAEAQELLQDSQALQTGSLILAVDAPVHVLPQIARFCERYPGISVKIETGNTDESLFRLFNYQADLALLGRDVSDERLISLPLRNDPMVAFVSRNHPWADRESICLADLDDTPLVLREIGSVTRQTLEEEMAGAGFRIRPAIQVEGREAAREAVVVGIGVGVVSAAEFGADSRVCALPITDCKRRLTETLVCLREQSSRRVVATFLEMVRESLLK
>NZ_CP052861.1|WP_169373974.1|6880297_6881623_+|MFS-transporter
MNKHIGTIKRWRVQIFAITWLAYAAFYFTRKAFSVAKLGIAEDPTFMLDKMAMANLDAIYLTAYAIGQFTWGILADRFGPRVVVLGGLLISAAAALVMGSFATLPIFATCMLIQGLAQSTGWSGLCKNLGSFFPSEQRGRVLGLWSSCYAFGGLVASPFAGWWAYTLMGTWHAAFISSAAVVGLVAVLFFIFQRNKPEDVGLPAVEPEPELSAEEAYAQSKISVLEPLKEILRNRTVLVLGLSYFLLKPARYAILLWGPVIVFEQMPSVGKVGAAIIPTSFELAGLLGPIMIGLASDKLFGARRMPACVISLLALTVSLALFMGALHTGSVMLVVALLFVMGLTLYGPDSMISGAAAIDFGTAKAGATAAGFVNGCGSVGAILGGLLPGYFDSVTVFIIFAGCAMFSAFVLIPHWNSRPAGLSLDCAFVPNQPMTIKPLRT
>NZ_CP052861.1|WP_169373975.1|6881633_6883025_+|FAD-dependent-oxidoreductase
MRPFWLDQALAAEPCAPCEPLAGDTRADVCIVGGGYTGLWTAIMLKEQNPELDVLLIEADICGAGASGRNGGCALSWSAKYFTLERLFGVEEAVRLVKESERSIYAIGTFCEQYGVDADYRLDGTLYTATNRAQCGSTDAVIAALERNGINSFTQRPVADVQRMAGSSKHLEGWFSPAAASVQPGKLVRGLRRVALQLGVRIHENTAMTGLEEGKPAGIQTPNGTVRADRVVLAMNAWMARAFPQFERSVAIVSSDMLITEPRPDLLNDIGLTSGVTVLDSRIFVHYYHNTPDGRIMLGKGGNTFAYGGRMLPVFDQPSPYAGLLRSSLADFFPAFAEVKVEATWNGPSDRSVTGLPFFGQMSASGNVFYGFGYSGSGVGPCHMGGQILASMVQGLDNPWTRSPLVNGPLGYFPPEPIRYLGSLMVRNAIRRKERAEDHGHRPRHLDVRLAKFAAAAGKADKG
>NZ_CP052861.1|WP_169373976.1|6883075_6884470_-|type-VI-secretion-system-tip-protein-VgrG
MHNDKESPFTLTLVEADLSLQVLQFNGCEGLNQPYRFDIEVIGLAPAMNLDRLLQQPAFLSLGDGQGFHGVLRSASREHRGTHRIGYRLVLVPHLQSLEQQRRRRVFHRLSVPAILRQLLEEHDLPEHSYRFELGTGHYPVRPFCIQYEESDLDLLQRLCEEEGIHYHFEHRRDGHVLVLADDSLSFPQEPVITPFHGDPFDEPDFAAIREMFQRHDSPLIQPQPQARDRSTAAVSFGAANHPLIGTAAINQRPASAQLHRDQRSRRSLERLRCQHRQVHGQSDQTGLLSGRIVQVEQHPVSSFNDQWLLTEIRHQGQQPSILADGPSGSAGYCNRFSAIPWSTVFRPALKQPRPSIPGFQPARVSGVSGAPAALDEQGRVQVSLWPEPAARDPVGLWLPVAVGVSGLPVAGSDVFICFLDSDPDRPVICAGANAQNPRPPNTPPARGDTRLLLDWLVNRPDTP
>NZ_CP052861.1|WP_169373977.1|6884702_6885410_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGAQWKVKHKEAASNAKGKIFGKLVKEITIAARNGADTATNAHLRLVVEQAKKASMPKETLDRAIKKGAGLLGETVQYHRVTYEGFAPHQVPLIVECVTDNINRTVAEIRVAFRKGQLGASGSVAWDFNHVGMIEASPDSPDADPEMAAIEAGAQDFEPGEEEGTTLFLTEPADLDSVQKALPEQGFTVLAAKLGYQPKNPVTGLSDEQMAEVEAFLEGLDNHDDVQDMFVGLAG
>NZ_CP052861.1|WP_169373978.1|6885494_6886820_-|protein-kinase
MNTLAQLRAGELAGITRLDLSCGLTEFPREIFDLADSLEVLNLSGNALSSLPEDLHRLTRLRIVFCSDNQFTELPACLGQCAALSMIGFRANRIERVPAAALPPLLRWLILTDNCISELPSELGERALMQKLMLSGNRLQQLPQSLVQLHRLELLRLSANRFTELPEWLLTLPALTWLAYAGNPLETEADATALDATPSIPWSALHLEQKLGEGASGVIHRATWERAQQPAAEVAVKLYKGEMTSDGSPLHEMNACITAGLHPNLIRVEGRIVEHPQAQAGLVMQLIDPSYRNLAGLPSLASCSRDVYADDTRFTAAVALRIARGIASAAEHLHQQGITHGDLYAHNILWNEHGDCLLGDFGGASFHATTDNLETRALQRIEVRAFGVLLEELLERIDSGLGDADRQVLEDLQRRCCQADVLARPGFGEVVGVLQGIFAAS
>NZ_CP052861.1|WP_169373979.1|6886905_6888018_-|cell-division-protein-ZapE
MAVRPPIRSRSTPRWPALRRLFGKAAAPTASHRVIHDYFQHKALAQGYTLSHSQQRVIDCMAQHATTLLGASAKTLPGLYLHGAVGRGKSWLLDGFFQAIPLAQKQRLHFHEFFAQLHQGMFSHREQPDALATTLDELLQDCRVLCFDEFHVYDISDAMLISRLFKALFRRGILLLVTSNYPPEGLLPNPLYHARFKPVIDLINTRMQVMEVGGPHDYRSQARTHAQQVFTQGHYVWPATRAQRQALNLPQSIAPLALPVGTRHLPARHCDGRTVGFTFSDLCDHPTAVMDYLELCRRFDHWIIDELPTLGDCSMAAQQRFINLIDVLYDQDKHLVLLGRHSLRESLGGDAIDLARTRSRLGQLVEVRES
>NZ_CP052861.1|WP_169373980.1|6888295_6889342_-|ABC-transporter-substrate-binding-protein
MNNVKRTALLGLSCMGALLTVTQAQAEPTLYLGMNGGTMERLYADKVLPVFEKANNVKVVIVPGTSADILAKVQASKGNPQLHVMFLDDGIMYRAISMGLCDKLQDSPTLAQIPAKGRIKDEAVAVSLGVTGLAYNTRLFKEKGWAAPTSWMDLADPRFKDKVVFQSMASSTFGLHGFLMFNRIQGGSETDVEPGFKAWPNTVGRNVLEYIPSSAKISEMLQTDEAALFPLTPTQVTALKLKGMPVEYAQPKEGAVVLNVAECAIANNTQPELAQKLAAFLLTPDAQAAALEDGDQIPSNPNTPTTDKTRGQVEAMKQYLQTAIAVDWDQVNEQRPAWNARWNRSIER
>NZ_CP052861.1|WP_169373981.1|6889360_6890476_-|FAD-binding-oxidoreductase
MIEVDAIIIGGGIVGASAALFLSKAGRRVALLERDFCGSHSSGVNYGGVRRQGRPLSQLPLSQQAHELWAQLPQLIGIDGEYQRSGHLKLARSLNDLRALQDYAASSQGFGLDLQILERNELRARFPWVGDVAAGASFCPDDGHANPRLVSPAFAQTARRHGAQVHEQCAVTRVEHDGQRFHVNTASGLEFRAPWLMNCAGAWAGKLAEQFGEAVPMHAGHPAMLVTEPLPLVMNASTGVEGGGIYARQVARGNCVLGGGQGFALDDARARPGQNAVLEILRQAVELYPFLEGAQAIRTWSGTEGYLPDRQPVIGHSGTQPGLLHGFGFAGAGFQIGPAVGQALTEIICSGASKTSLDAFSITRFHSIPVA
>NZ_CP052861.1|WP_169373982.1|6890472_6891828_-|FAD-dependent-oxidoreductase
MNPVIIIGAGPAGIRAAQTLVAHGVRPILLDEAARGGGQIYRRQPANFKRSAVKLYGFEAHKANAIHQTLDALREQLDYRPETLVWNAEAGALDTLQDGRATRLAFSRVIVATGATDRILPVPGWTLPGVYSLGAAQIALKFQGCAIGERVVFAGSGPLLYLVAYQYAKAGAKVVAVLDSSPFSQQARALPGLLAQPATLAKGIYYRSWLTAHGIPVHQGASLVQVNGEQRVQSLNWRNAKGSQQIDCDAVAFAHGLRSETQLADLLGCEFAWNPLNRAWLPERDSAGRSSVAEVYLAGDGAGIMGADAAEMAGERAALALLEDSGYLIPPQRSHQLEHSLKRIGDFRQGLEQAFVFPEDWAAHTADHLIVCRCEEVRAGEIRQVVREGHWEINRVKAHCRVGMGRCQGRMCGAAAAEIIACESQRKVSEIGRLRAQSPVKPLPFGLEVEP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP052861_5	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	NZ_CP052861.1	290714-290765	0	1.0
NZ_CP052861_5	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	NZ_CP052861.1	2861383-2861434	0	1.0
NZ_CP052861_2	2.1\|3366267\|57\|NZ_CP052861\|CRISPRCasFinder	3366267-3366323	57	NZ_CP052861.1	1033301-1033357	1	0.982
NZ_CP052861_2	2.1\|3366267\|57\|NZ_CP052861\|CRISPRCasFinder	3366267-3366323	57	NZ_CP052861.1	5832597-5832653	1	0.982
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	3315779-3315806	1	0.964
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	5271940-5271967	1	0.964
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	2304261-2304288	1	0.964
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	4453093-4453120	1	0.964
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	4780500-4780527	1	0.964
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	5969969-5969996	1	0.964
NZ_CP052861_5	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	NZ_CP052861.1	2352896-2352947	1	0.981
NZ_CP052861_5	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	NZ_CP052861.1	4052253-4052304	1	0.981
NZ_CP052861_5	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	NZ_CP052861.1	6084228-6084279	1	0.981
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	4061754-4061781	2	0.929
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	5950475-5950502	2	0.929
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	6148769-6148796	2	0.929
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	3932139-3932166	2	0.929
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	5882197-5882224	2	0.929
NZ_CP052861_3	3.1\|4202052\|28\|NZ_CP052861\|CRISPRCasFinder	4202052-4202079	28	NZ_CP052861.1	5976155-5976182	2	0.929
NZ_CP052861_5	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	NZ_CP052861.1	1193456-1193507	2	0.962
NZ_CP052861_5	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	NZ_CP052861.1	6085951-6086002	2	0.962

1. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to position: 290714-290765, mismatch: 0, identity: 1.0

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	Protospacer
****************************************************

2. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to position: 2861383-2861434, mismatch: 0, identity: 1.0

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	Protospacer
****************************************************

3. spacer 2.1|3366267|57|NZ_CP052861|CRISPRCasFinder matches to position: 1033301-1033357, mismatch: 1, identity: 0.982

tgccgcccgggacgctccgcgtcccttcgcaggcgtgacgcagagcgtcacaggatg	CRISPR spacer
tgccgcccgggacgctccgcgtcccttcgcaagcgtgacgcagagcgtcacaggatg	Protospacer
*******************************.*************************

4. spacer 2.1|3366267|57|NZ_CP052861|CRISPRCasFinder matches to position: 5832597-5832653, mismatch: 1, identity: 0.982

tgccgcccgggacgctccgcgtcccttcgcaggcgtgacgcagagcgtcacaggatg	CRISPR spacer
tgccgcccgggacgctccgcgtcccttcgcaagcgtgacgcagagcgtcacaggatg	Protospacer
*******************************.*************************

5. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 3315779-3315806, mismatch: 1, identity: 0.964

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atccaaagccgaacgcggagcgtccgtt	Protospacer
***.************************

6. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 5271940-5271967, mismatch: 1, identity: 0.964

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atccaaagccgaacgcggagcgtccgtt	Protospacer
***.************************

7. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 2304261-2304288, mismatch: 1, identity: 0.964

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atccaaagccgaacgcggagcgtccgtt	Protospacer
***.************************

8. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 4453093-4453120, mismatch: 1, identity: 0.964

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atccaaagccgaacgcggagcgtccgtt	Protospacer
***.************************

9. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 4780500-4780527, mismatch: 1, identity: 0.964

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atctagagccgaacgcggagcgtccgtt	Protospacer
*****.**********************

10. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 5969969-5969996, mismatch: 1, identity: 0.964

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atccaaagccgaacgcggagcgtccgtt	Protospacer
***.************************

11. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to position: 2352896-2352947, mismatch: 1, identity: 0.981

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctccgcgtccgctttgggacgcagagcgtcccgggctg	Protospacer
************************************.***************

12. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to position: 4052253-4052304, mismatch: 1, identity: 0.981

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctccgcgtccgctttgggacgcagagcgtcccgggctg	Protospacer
************************************.***************

13. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to position: 6084228-6084279, mismatch: 1, identity: 0.981

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctccgcgtccgctttgggacgcagagcgtcccgggctg	Protospacer
************************************.***************

14. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 4061754-4061781, mismatch: 2, identity: 0.929

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atccagagccgaacgcggagcgtccgtt	Protospacer
***.*.**********************

15. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 5950475-5950502, mismatch: 2, identity: 0.929

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atcaacagccgaacgcggagcgtccgtt	Protospacer
*** * **********************

16. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 6148769-6148796, mismatch: 2, identity: 0.929

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atccagagccgaacgcggagcgtccgtt	Protospacer
***.*.**********************

17. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 3932139-3932166, mismatch: 2, identity: 0.929

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atcaagagccgaacgcggagcgtccgtt	Protospacer
*** *.**********************

18. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 5882197-5882224, mismatch: 2, identity: 0.929

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atcaacagccgaacgcggagcgtccgtt	Protospacer
*** * **********************

19. spacer 3.1|4202052|28|NZ_CP052861|CRISPRCasFinder matches to position: 5976155-5976182, mismatch: 2, identity: 0.929

atctaaagccgaacgcggagcgtccgtt	CRISPR spacer
atcaacagccgaacgcggagcgtccgtt	Protospacer
*** * **********************

20. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to position: 1193456-1193507, mismatch: 2, identity: 0.962

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctctgcgtccgctttgggacgcggagcgtccagggctg	Protospacer
*****************.*************************** ******

21. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to position: 6085951-6086002, mismatch: 2, identity: 0.962

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctctgcgtccgctttggggcgcggagcgtcccgggctg	Protospacer
*****************.**************.*******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1325482 : 1364469

Pseudomonas_phage(59.46%)

terminase,coat,tail,holin,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169369966.1\|1325482_1325692_+	hypothetical protein	A0A1B0VP78	Pseudomonas_phage	5.7e-09	50.8
WP_169369967.1\|1325970_1326588_+	hypothetical protein	NA	NA	NA	NA
WP_169369968.1\|1327253_1327949_+	DUF159 family protein	A0A2H4J991	uncultured_Caudovirales_phage	1.0e-110	80.9
WP_169369969.1\|1327945_1328176_-	hypothetical protein	NA	NA	NA	NA
WP_169369970.1\|1328228_1328654_-	cell wall hydrolase	A0A1B0VMI2	Pseudomonas_phage	1.7e-63	79.4
WP_169369971.1\|1328715_1329099_-	hypothetical protein	NA	NA	NA	NA
WP_169369972.1\|1330489_1331152_-	hypothetical protein	A0A059VF40	Pseudomonas_phage	4.9e-94	71.4
WP_169369973.1\|1331148_1331505_-	hypothetical protein	A0A059VJS9	Pseudomonas_phage	3.3e-33	60.8
WP_169369974.1\|1331508_1335072_-\|tail	phage tail protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	68.0
WP_169369975.1\|1335130_1335742_-\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	5.7e-81	76.4
WP_169369976.1\|1336227_1336632_+	hypothetical protein	NA	NA	NA	NA
WP_169369977.1\|1336700_1337465_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	1.2e-131	82.9
WP_169369978.1\|1337467_1338220_-\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	7.4e-123	81.6
WP_169369979.1\|1338231_1338573_-\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	4.8e-45	73.5
WP_169369980.1\|1338576_1342050_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	4.9e-286	58.7
WP_169374188.1\|1342060_1342330_-	hypothetical protein	A0A1B0VMG9	Pseudomonas_phage	2.4e-23	67.1
WP_169369981.1\|1342362_1342752_-	hypothetical protein	A0A1B0VMH4	Pseudomonas_phage	1.1e-50	78.3
WP_169369982.1\|1342761_1343409_-\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	1.1e-55	53.5
WP_169369983.1\|1343479_1343899_-	DUF4128 domain-containing protein	A0A2H4J4N2	uncultured_Caudovirales_phage	1.8e-46	66.4
WP_169369984.1\|1343895_1344492_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	6.6e-50	50.9
WP_169369985.1\|1344494_1344884_-	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	2.8e-41	68.2
WP_169369986.1\|1344886_1345264_-	hypothetical protein	A0A2H4J0N2	uncultured_Caudovirales_phage	4.0e-45	78.4
WP_169369987.1\|1345274_1345715_-	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	2.8e-37	56.8
WP_169369988.1\|1345766_1346744_-\|coat	phage coat protein	A0A2H4JIE6	uncultured_Caudovirales_phage	7.5e-160	84.6
WP_169369989.1\|1346747_1347485_-	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	2.1e-77	64.2
WP_169369990.1\|1347569_1348055_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	8.1e-22	37.1
WP_169374189.1\|1348063_1349110_-\|capsid	minor capsid protein	A0A2H4J3G9	uncultured_Caudovirales_phage	3.8e-133	70.1
WP_169369991.1\|1349093_1350557_-	DUF4055 domain-containing protein	A0A2H4J0H4	uncultured_Caudovirales_phage	1.3e-219	77.8
WP_169369992.1\|1350556_1351882_-\|terminase	terminase	A0A1B0VP58	Pseudomonas_phage	1.0e-252	96.0
WP_169369993.1\|1351856_1352333_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	1.9e-68	83.5
WP_169369994.1\|1352365_1352989_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	5.6e-108	90.3
WP_169369995.1\|1353105_1353393_+	hypothetical protein	NA	NA	NA	NA
WP_169369996.1\|1353492_1353705_+	hypothetical protein	NA	NA	NA	NA
WP_169369997.1\|1354232_1354421_-	hypothetical protein	NA	NA	NA	NA
WP_169368739.1\|1354588_1354777_-	hypothetical protein	NA	NA	NA	NA
WP_169369998.1\|1354745_1355123_-	hypothetical protein	NA	NA	NA	NA
WP_169369999.1\|1355119_1355446_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.3e-12	38.7
WP_169370000.1\|1355633_1355987_+	hypothetical protein	NA	NA	NA	NA
WP_169370001.1\|1356247_1356556_-	hypothetical protein	NA	NA	NA	NA
WP_169370002.1\|1356822_1357146_-	hypothetical protein	NA	NA	NA	NA
WP_169370003.1\|1357157_1357340_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	4.1e-11	84.2
WP_169370004.1\|1357627_1358209_-	hypothetical protein	A0A059VF83	Pseudomonas_phage	1.1e-73	69.4
WP_169370005.1\|1358205_1358817_-	recombination protein NinG	A0A059VA66	Pseudomonas_phage	1.5e-65	66.1
WP_169370006.1\|1358813_1359284_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	3.9e-53	60.9
WP_169370007.1\|1359280_1359472_-	hypothetical protein	NA	NA	NA	NA
WP_169370008.1\|1359468_1359759_-	hypothetical protein	NA	NA	NA	NA
WP_169370009.1\|1359758_1360553_-	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	2.8e-88	61.9
WP_169370010.1\|1360542_1361340_-	phage replication protein	A0A2H4J580	uncultured_Caudovirales_phage	2.0e-73	56.8
WP_169370011.1\|1361339_1362077_-	phage antirepressor KilAC domain-containing protein	A0A191ZDI8	Acinetobacter_phage	3.4e-19	55.7
WP_169370012.1\|1362321_1362744_-	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	1.8e-30	47.1
WP_020799051.1\|1363144_1363348_-	hypothetical protein	NA	NA	NA	NA
WP_169370013.1\|1363716_1364469_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	2.8e-69	61.9

DBSCAN-SWA_2

1369987 : 1375937

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169370023.1\|1369987_1370806_+	hypothetical protein	A0A059VJU4	Pseudomonas_phage	1.9e-92	66.4
WP_169370024.1\|1370827_1371253_+	hypothetical protein	F8TUU3	EBPR_podovirus	1.7e-15	59.7
WP_169370025.1\|1371279_1371528_+	hypothetical protein	NA	NA	NA	NA
WP_169370026.1\|1371524_1371758_+	hypothetical protein	NA	NA	NA	NA
WP_169370027.1\|1371754_1371949_+	hypothetical protein	Q9MC67	Pseudomonas_phage	9.4e-06	46.0
WP_169374190.1\|1372274_1373357_+	hypothetical protein	NA	NA	NA	NA
WP_169370028.1\|1373412_1374402_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	1.2e-64	55.3
WP_169370029.1\|1374401_1375064_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	1.4e-29	37.3
WP_169370030.1\|1375066_1375333_+	hypothetical protein	NA	NA	NA	NA
WP_169370031.1\|1375292_1375544_+	hypothetical protein	NA	NA	NA	NA
WP_169370032.1\|1375616_1375937_+	hypothetical protein	A0A2H4J0R5	uncultured_Caudovirales_phage	1.3e-07	31.4

DBSCAN-SWA_3

2348265 : 2397623

Pseudomonas_phage(66.67%)

terminase,protease,tail,portal,bacteriocin,capsid,head,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169370818.1\|2348265_2348802_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_169370819.1\|2348807_2350340_+	inactive transglutaminase family protein	NA	NA	NA	NA
WP_169370820.1\|2350339_2351326_+	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_169370821.1\|2351533_2352871_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	1.2e-46	43.9
WP_169370822.1\|2352976_2353594_-	bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH	NA	NA	NA	NA
WP_169370823.1\|2353767_2354508_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_169370824.1\|2354616_2355540_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_123403219.1\|2355665_2356412_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_149656861.1\|2356474_2357170_-	HAD-IA family hydrolase	M1IMD4	Acanthocystis_turfacea_Chlorella_virus	1.5e-05	25.1
WP_169370825.1\|2357420_2362289_+	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	5.8e-35	42.7
WP_169370826.1\|2362291_2362687_+	hypothetical protein	NA	NA	NA	NA
WP_169370827.1\|2362940_2363366_+	hypothetical protein	NA	NA	NA	NA
WP_169370828.1\|2363432_2363651_-	hypothetical protein	NA	NA	NA	NA
WP_169370829.1\|2363737_2363899_-	hypothetical protein	NA	NA	NA	NA
WP_133836673.1\|2364028_2364451_-	hypothetical protein	NA	NA	NA	NA
WP_169370830.1\|2364621_2364993_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_169370831.1\|2365313_2365502_-	hypothetical protein	NA	NA	NA	NA
WP_054054102.1\|2366517_2366838_-	YbjQ family protein	NA	NA	NA	NA
WP_169370832.1\|2368485_2368782_+	hypothetical protein	NA	NA	NA	NA
WP_169370833.1\|2368856_2369747_-	hypothetical protein	NA	NA	NA	NA
WP_169370834.1\|2369818_2370796_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	2.3e-124	68.3
WP_169374226.1\|2370768_2371479_-	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.5e-37	38.8
WP_169370835.1\|2371469_2372021_-	DNA-binding protein	A0A0U4J942	Pseudomonas_phage	4.8e-55	61.7
WP_169370836.1\|2372017_2372941_-	hypothetical protein	NA	NA	NA	NA
WP_169370837.1\|2372937_2373645_-	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	2.4e-54	44.9
WP_169370838.1\|2373653_2375312_-\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	1.0e-116	44.7
WP_169370839.1\|2375322_2375847_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	5.4e-72	71.8
WP_169370840.1\|2375843_2377019_-	hypothetical protein	A0A0U4JJ14	Pseudomonas_phage	2.7e-156	71.9
WP_169370841.1\|2377015_2377333_-	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	4.0e-38	78.4
WP_169370842.1\|2377329_2379315_-\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	7.6e-135	43.0
WP_169370843.1\|2379487_2379778_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	5.5e-26	69.3
WP_169370844.1\|2379828_2380281_-\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	1.2e-27	51.7
WP_169370845.1\|2380280_2380814_-	lysozyme	NA	NA	NA	NA
WP_169370846.1\|2380810_2381107_-	hypothetical protein	NA	NA	NA	NA
WP_169370847.1\|2381106_2381316_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_169370848.1\|2381315_2381765_-	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	3.1e-60	73.2
WP_169370849.1\|2381771_2382887_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	2.1e-145	70.8
WP_169370850.1\|2382898_2383579_-	virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	4.3e-61	58.0
WP_169370851.1\|2383568_2384018_-\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	3.0e-55	71.4
WP_169370852.1\|2384014_2384479_-\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	1.0e-50	66.4
WP_169370853.1\|2384579_2385284_-\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	7.0e-75	65.1
WP_169370854.1\|2385280_2386303_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	1.7e-146	74.4
WP_169370855.1\|2386303_2387230_-\|capsid	capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	1.7e-60	45.6
WP_169370856.1\|2387393_2389460_+\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	5.9e-271	72.2
WP_169370857.1\|2389395_2390250_+\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	1.5e-103	77.9
WP_169370858.1\|2390315_2390573_+	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	6.0e-16	50.6
WP_169370859.1\|2390640_2390826_-	hypothetical protein	NA	NA	NA	NA
WP_169374227.1\|2390927_2391275_-	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	1.2e-16	42.5
WP_169370860.1\|2391367_2391568_+	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	2.0e-11	53.8
WP_169370861.1\|2391597_2392077_+	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	6.7e-45	56.8
WP_169370862.1\|2392073_2392439_+	hypothetical protein	NA	NA	NA	NA
WP_169370863.1\|2392511_2392745_+	hypothetical protein	NA	NA	NA	NA
WP_169370864.1\|2392749_2395548_+	bifunctional DNA primase/helicase	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	65.4
WP_169370865.1\|2395563_2395857_+	hypothetical protein	NA	NA	NA	NA
WP_169370866.1\|2395923_2396172_+	hypothetical protein	NA	NA	NA	NA
WP_169370867.1\|2396161_2396332_+	hypothetical protein	NA	NA	NA	NA
WP_169370868.1\|2396438_2397623_+	DUF3596 domain-containing protein	A0A2H4JGM5	uncultured_Caudovirales_phage	1.1e-133	59.1

DBSCAN-SWA_4

3021940 : 3109578

Pseudomonas_phage(44.9%)

tRNA,plate,protease,tail,holin,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169371331.1\|3021940_3023656_+\|tRNA	proline--tRNA ligase	A0A2K9L0T2	Tupanvirus	7.6e-06	24.9
WP_169371332.1\|3023673_3024627_+	hypothetical protein	NA	NA	NA	NA
WP_169371333.1\|3024733_3025795_-	DNA polymerase IV	NA	NA	NA	NA
WP_169371334.1\|3027065_3029708_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_169371335.1\|3029707_3031006_+	virulence factor family protein	NA	NA	NA	NA
WP_169371336.1\|3031251_3033153_-	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	7.0e-77	34.0
WP_123512023.1\|3033442_3034780_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_169371337.1\|3034892_3035366_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_169371338.1\|3035447_3036158_+	RNA-binding protein	NA	NA	NA	NA
WP_054615966.1\|3036232_3036703_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.9e-36	50.0
WP_169371339.1\|3036871_3037642_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_169371340.1\|3037811_3038510_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_003443014.1\|3038621_3039401_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_169371341.1\|3039539_3040466_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007947182.1\|3040462_3040825_-	diacylglycerol kinase	NA	NA	NA	NA
WP_010462704.1\|3040900_3041551_-	response regulator transcription factor	NA	NA	NA	NA
WP_169371342.1\|3041748_3042507_-	DTW domain-containing protein	NA	NA	NA	NA
WP_169371343.1\|3042697_3043123_+	hypothetical protein	NA	NA	NA	NA
WP_054047053.1\|3043123_3043318_-	hypothetical protein	NA	NA	NA	NA
WP_169371344.1\|3043667_3044786_+	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_169371345.1\|3044836_3045304_-	recombination regulator RecX	NA	NA	NA	NA
WP_007907270.1\|3045312_3046365_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.5e-110	60.0
WP_169371346.1\|3046448_3046949_-	CinA family protein	B5TK85	Pseudomonas_phage	3.3e-71	84.9
WP_169371347.1\|3047028_3047547_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	8.5e-62	75.8
WP_169371348.1\|3047528_3048092_-	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	7.5e-88	84.4
WP_169371349.1\|3048125_3048557_-	hypothetical protein	NA	NA	NA	NA
WP_169371350.1\|3048559_3049297_-	hypothetical protein	B5TK77	Pseudomonas_phage	5.2e-20	38.5
WP_169371351.1\|3049314_3049797_-	hypothetical protein	NA	NA	NA	NA
WP_169371352.1\|3049796_3050723_-	hypothetical protein	B5TK77	Pseudomonas_phage	1.5e-21	75.8
WP_169371353.1\|3050756_3051323_-\|tail	phage tail protein	B5TK80	Pseudomonas_phage	8.4e-79	72.0
WP_169371354.1\|3051330_3052410_-\|tail	phage tail protein	B5TK79	Pseudomonas_phage	3.7e-115	59.9
WP_169374243.1\|3052534_3053038_-\|tail	phage tail protein	B5TK78	Pseudomonas_phage	2.5e-42	59.9
WP_169371355.1\|3054055_3054655_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	5.9e-107	93.0
WP_169371356.1\|3054642_3055686_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.8e-158	83.5
WP_123719829.1\|3055675_3056074_-	hypothetical protein	B5TK74	Pseudomonas_phage	1.9e-69	96.2
WP_169371357.1\|3056073_3056583_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	5.2e-80	89.9
WP_169371358.1\|3056622_3057666_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	5.8e-158	80.9
WP_169371359.1\|3057669_3058908_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	6.1e-191	81.6
WP_169371360.1\|3058894_3060580_-\|tail	phage tail protein	B5TK70	Pseudomonas_phage	7.8e-88	50.2
WP_054047093.1\|3060710_3061007_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	1.6e-41	90.8
WP_123511965.1\|3061003_3061351_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	8.0e-56	90.4
WP_169371361.1\|3061429_3062926_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	2.8e-262	92.4
WP_007907211.1\|3062925_3063108_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.4e-27	98.3
WP_169371362.1\|3063104_3063689_-	hypothetical protein	B5TK65	Pseudomonas_phage	2.9e-90	82.0
WP_123511959.1\|3063849_3064878_-	phage late control D family protein	A0A2H4JH05	uncultured_Caudovirales_phage	3.9e-98	54.3
WP_169371363.1\|3064887_3065100_-\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	9.0e-18	64.3
WP_123511955.1\|3065092_3065476_-\|tail	phage tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.6e-36	56.7
WP_169371364.1\|3065475_3067620_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_169371365.1\|3067748_3068330_-\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.7e-26	37.9
WP_169371366.1\|3068513_3069020_-\|tail	phage tail protein	NA	NA	NA	NA
WP_169371367.1\|3069019_3070186_-\|tail	phage tail protein	B0ZSG8	Halomonas_phage	4.5e-127	58.0
WP_169371368.1\|3070187_3070370_-	hypothetical protein	NA	NA	NA	NA
WP_169374244.1\|3070467_3070941_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_169371369.1\|3071037_3072933_-\|tail	phage tail protein	A0A088FQW7	Escherichia_phage	4.4e-39	28.2
WP_169371370.1\|3072933_3073569_-\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	2.1e-46	54.9
WP_169371371.1\|3073565_3074561_-\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	2.3e-111	64.4
WP_123405816.1\|3074557_3074890_-\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.4e-36	69.1
WP_169371372.1\|3074900_3075512_-\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.0e-42	59.0
WP_169371373.1\|3075515_3076028_-	hypothetical protein	A0A2H4JEV5	uncultured_Caudovirales_phage	4.4e-18	34.9
WP_169371374.1\|3076074_3076416_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	2.4e-52	87.9
WP_169371375.1\|3076951_3077686_-	helix-turn-helix domain-containing protein	B5TK58	Pseudomonas_phage	2.1e-130	94.3
WP_169371376.1\|3077893_3080473_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	9.0e-27	24.0
WP_008077096.1\|3080615_3080939_+	ferredoxin family protein	NA	NA	NA	NA
WP_008154012.1\|3081398_3082406_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_169371377.1\|3082511_3083369_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.4e-06	33.3
WP_054047145.1\|3083580_3084258_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-43	53.7
WP_169371378.1\|3084257_3085007_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-68	53.4
WP_169371379.1\|3084994_3086053_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_010462780.1\|3086049_3086523_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_169371380.1\|3086566_3087412_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_169371381.1\|3087420_3088533_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.6e-31	27.7
WP_169371382.1\|3088640_3089537_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_169371383.1\|3089573_3090281_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_008028992.1\|3090277_3090556_-	cell division protein FtsB	NA	NA	NA	NA
WP_169371384.1\|3090728_3092018_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	9.7e-139	59.9
WP_054047163.1\|3092174_3093020_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.6e-49	42.8
WP_123508114.1\|3093025_3094657_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.5e-157	53.1
WP_169371385.1\|3094931_3096245_-\|tRNA	tRNA lysidine(34) synthetase TilS	A7IXR9	Paramecium_bursaria_Chlorella_virus	6.4e-05	24.5
WP_169371386.1\|3096373_3097321_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_169371387.1\|3097461_3100983_-	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	6.6e-198	36.4
WP_054047172.1\|3101059_3101686_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.7e-27	38.6
WP_169371388.1\|3101697_3102828_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_169371389.1\|3102830_3103607_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_008154051.1\|3103603_3104044_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_169371390.1\|3104152_3105208_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_092272436.1\|3105211_3105715_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_169371391.1\|3105760_3108151_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_169371392.1\|3108225_3109578_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA

DBSCAN-SWA_5

5008511 : 5044227

Bacillus_virus(40.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169372720.1\|5008511_5009201_-\|transposase	transposase	NA	NA	NA	NA
WP_169372721.1\|5009444_5009846_+	hypothetical protein	NA	NA	NA	NA
WP_169372722.1\|5010017_5010686_-	polysaccharide lyase family 7 protein	NA	NA	NA	NA
WP_169372723.1\|5011008_5013132_+	EAL domain-containing protein	G3MA91	Bacillus_virus	5.9e-24	39.3
WP_169374284.1\|5013177_5013669_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_123404302.1\|5013681_5013978_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_169372724.1\|5014104_5014557_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_169372725.1\|5014814_5015558_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_169372726.1\|5015713_5017897_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_169372727.1\|5018060_5019239_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_133835654.1\|5019371_5020757_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-49	31.2
WP_169372728.1\|5020943_5022371_-	multidrug transporter subunit MdtD	NA	NA	NA	NA
WP_169372729.1\|5022510_5023860_-	TldD/PmbA family protein	NA	NA	NA	NA
WP_169372730.1\|5023859_5025302_-	TldD/PmbA family protein	NA	NA	NA	NA
WP_169372731.1\|5025529_5027233_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.5e-49	29.7
WP_169372732.1\|5027386_5028859_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_010466984.1\|5028958_5029552_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_169372733.1\|5029874_5031881_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	4.1e-19	25.8
WP_169372734.1\|5032079_5033258_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-25	37.6
WP_169372735.1\|5033254_5034100_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_169372736.1\|5034166_5035114_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_133835664.1\|5035549_5036926_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_123513212.1\|5037541_5038645_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_169372737.1\|5038788_5039046_-	hypothetical protein	NA	NA	NA	NA
WP_169372738.1\|5039416_5040580_-	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_169372739.1\|5040593_5041070_-	thioesterase	NA	NA	NA	NA
WP_133835668.1\|5041213_5042179_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_169372740.1\|5042319_5043207_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_169372741.1\|5043282_5044227_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_6

6989147 : 6995424

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169374043.1\|6989147_6990428_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-98	53.9
WP_169374044.1\|6990428_6991823_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_169374045.1\|6991952_6992954_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_169374046.1\|6993044_6994046_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	8.8e-164	84.8
WP_169374047.1\|6994042_6994378_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.0e-44	79.3
WP_169374048.1\|6994374_6994668_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	7.2e-34	72.7
WP_169374049.1\|6994667_6995030_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.8e-40	69.2
WP_054614132.1\|6995031_6995424_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.7e-54	80.6

Anti-CRISPR protein detection

Acr_ID: NZ_CP052861.1|WP_169370861.1|2391597_2392077_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP052861.1|WP_169370862.1|2392073_2392439_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP052861.1|WP_169370861.1|2391597_2392077_+|hypothetical-protein

2391597_2392077_+

159 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4489795918367347	0.8448275862068966

2348265-2397623

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP052861_5	Orphan	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	2352896-2352947	1

1. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to NZ_CP052861 position: 2352896-2352947, mismatch: 1

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctccgcgtccgctttgggacgcagagcgtcccgggctg	Protospacer
************************************.***************

NZ_CP052861.1|WP_169370862.1|2392073_2392439_+|hypothetical-protein

2392073_2392439_+

121 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4489795918367347	0.8448275862068966

2348265-2397623

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP052861_5	Orphan	5.1\|6879076\|52\|NZ_CP052861\|CRISPRCasFinder	6879076-6879127	52	2352896-2352947	1

1. spacer 5.1|6879076|52|NZ_CP052861|CRISPRCasFinder matches to NZ_CP052861 position: 2352896-2352947, mismatch: 1

tgcctcaatggacgctccgcgtccgctttgggacgcggagcgtcccgggctg	CRISPR spacer
tgcctcaatggacgctccgcgtccgctttgggacgcagagcgtcccgggctg	Protospacer
************************************.***************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP052861

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information