CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP052067	Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence	0 crisprs	PrimPol	0	0
NZ_CP052065	Lactobacillus paracasei strain 347-16 chromosome, complete genome	3 crisprs	DinG,WYL,csa5gr11,DEDDh,csa3,cas3,csn2,cas2,cas1	21	6
NZ_CP052066	Lactobacillus paracasei strain 347-16 plasmid unnamed1, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052065_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052065_1

755346-755476

Orphan

Consensus_repeat	Method
CGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGGCAGGGCTTTGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052065_1

>merge|NZ_CP052065|1|755346-755476|CRISPRCasFinder
CGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGGCAGGGCTTTGGTCGTGTAGGTTCGAAGCCCTTATGCTTCGGTTTCTGGGTCGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGACAGGGCTTTGGTC

>NZ_CP052065|1|1|755346-755476|CRISPRCasFinder
CGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGGCAGGGCTTTGGTC	GTGTAGGTTCGAAGCCCTTATGCTTCGGTTTCTGGGT
CGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGACAGGGCTTTGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052065.1\|WP_003587361.1\|751817_754943_+\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_CP052065.1\|WP_003569169.1\|745699_746638_-\|tagatose-6-phosphate-kinase	unknown	unknown	gnl\|CDD\|237405
NZ_CP052065.1\|WP_003569168.1\|744997_745678_-\|DUF4867-family-protein	unknown	unknown	gnl\|CDD\|379783
NZ_CP052065.1\|WP_003573966.1\|755932_756409_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107228
NZ_CP052065.1\|WP_016363499.1\|756402_756636_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003563758.1\|755041_755185_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003569186.1\|756965_758069_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP052065.1\|WP_016381496.1\|750696_751818_+\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NZ_CP052065.1\|WP_003563745.1\|750009_750636_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|372595
NZ_CP052065.1\|WP_003563743.1\|748788_749565_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP052065.1\|WP_003569173.1\|747792_748311_-\|galactose-6-phosphate-isomerase-subunit-LacB	unknown	unknown	gnl\|CDD\|181506
NZ_CP052065.1\|WP_003569171.1\|746752_747754_-\|tagatose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|183502
NZ_CP052065.1\|WP_003563790.1\|761451_762273_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238574
NZ_CP052065.1\|WP_003569175.1\|748355_748784_-\|galactose-6-phosphate-isomerase-subunit-LacA	unknown	unknown	gnl\|CDD\|181505
NZ_CP052065.1\|WP_003563792.1\|762446_763508_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003563776.1\|759067_759736_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
NZ_CP052065.1\|WP_003569189.1\|758279_759065_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP052065.1\|WP_011674244.1\|760747_761380_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227169
NZ_CP052065.1\|WP_003569192.1\|759989_760514_+\|DUF308-domain-containing-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003563777.1\|759732_759912_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP052065.1\|WP_003587361.1\|751817_754943_+\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.3057e-77
NZ_CP052065.1\|WP_003569169.1\|745699_746638_-\|tagatose-6-phosphate-kinase	gnl\|CDD\|237405	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional.	8.80119e-143
NZ_CP052065.1\|WP_003569168.1\|744997_745678_-\|DUF4867-family-protein	gnl\|CDD\|379783	pfam16161, DUF4867, Domain of unknown function (DUF4867). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various human gut Firmicutes and a few eubacteria species. It is also amply represented in human gut metagenomic datasets. Distant homology analysis and marginal HMM overlaps suggest this family is a distant homolog of Ureidoglycolate hydrolase pfam04115, but this prediction is not verified by experiment, therefore the function of this family is still unknown.	2.20145e-88
NZ_CP052065.1\|WP_003573966.1\|755932_756409_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107228	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane.	8.90883e-46
NZ_CP052065.1\|WP_003569186.1\|756965_758069_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	2.81936e-124
NZ_CP052065.1\|WP_016381496.1\|750696_751818_+\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	7.81151e-49
NZ_CP052065.1\|WP_003563745.1\|750009_750636_-\|HAD-IA-family-hydrolase	gnl\|CDD\|372595	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.	8.24385e-35
NZ_CP052065.1\|WP_003563743.1\|748788_749565_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.34504e-74
NZ_CP052065.1\|WP_003569173.1\|747792_748311_-\|galactose-6-phosphate-isomerase-subunit-LacB	gnl\|CDD\|181506	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed.	1.64063e-103
NZ_CP052065.1\|WP_003569171.1\|746752_747754_-\|tagatose-bisphosphate-aldolase	gnl\|CDD\|183502	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed.	0
NZ_CP052065.1\|WP_003569175.1\|748355_748784_-\|galactose-6-phosphate-isomerase-subunit-LacA	gnl\|CDD\|181505	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed.	1.46767e-74
NZ_CP052065.1\|WP_003563776.1\|759067_759736_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	4.81778e-31
NZ_CP052065.1\|WP_003569189.1\|758279_759065_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	2.12939e-22
NZ_CP052065.1\|WP_011674244.1\|760747_761380_+\|hypothetical-protein	gnl\|CDD\|227169	COG4832, COG4832, Uncharacterized conserved protein [Function unknown].	3.18158e-11
NZ_CP052065.1\|WP_003563790.1\|761451_762273_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	4.1808e-94

>NZ_CP052065.1|WP_003563758.1|755041_755185_+|hypothetical-protein
MASLSKEQKKALIAKVEKERQDHPEKKSKKSGFETIDEEAERLESEN
>NZ_CP052065.1|WP_003587361.1|751817_754943_+|SMC-family-ATPase
MQLKQLHMQFFGPYADAVVDFDDFRTSPLFLISGPTGSGKTTIFDALIYALYGETSGERDGGQMRSNFAGNSDLTKVTLTFDHDGKHYLIERQPPQLQSKKRGDGLTEVKAKVLLAISSDEKQVAEYRKKNQVQEQLDAVLHLDASQFRQIVLLPQGDFRRFLDADSNAKEDLLRDLFGTQLIQRWQTAMLAQMKAKGAAIQDQERMLDVLMSQFDFETAPDEHATMADKLSLMRATVASQAKVVTARQATAAQSHQRYQEAQTALQQGQQLAQAFTEREQAATALAKLAEQKQTHQKQLKQIEQLTWVQQHENAAQRVQKAGQDLKAAIVQSEQTQAALTTTEQKFSLDKQALARLQAKSDQIEAQKKQLNSLQAVQQQLTAIAEQNKQVIKQAAIVNEAELALTHAQQQLTDAQTVKTQQQTSLDNLGLDELINTVNTQRNLLAALVPQAANYQEAQADVAQLSMAIKKTQVTLEQAETQVAATTSHLNKLQQTQIRQQIAHLAAKLEPDSPCPVCGSTSHPHPALVVDEPLVSEAALKQADQERQKAAARKTMVETQLANLETQLKTAKAKTAQARQAFTEHWQEQAKLIAGVADKTGILQQLTALKTLAATNEHQLTEAQTEHAALQVALKKSDKAITTGTTKVQQCEASLNTARIDAAEAQSALKTMQKNLPAEATDLATVAAQATTLQTTITTYQAQLQEAQARVNALDRQLAGLQADEKHAAAQVTALTKEQAEAKATFTIAVTQYFGADGKQRFAELQLRVSQLPLLNEQVQTYEHTQLKQQTLLDAANKTIGTQAQPQLDQLEAEATAAETTATNDQTALIKISQAHDAAEKLAKQAATIFTANQTALAAYADLQTLATVMNGNGPKKLSLERYVLQAYLQEILNVANSRLQVLSNNRYQFVLHTSLGTQKIHSGLEIDVYDDQVGEKRAVQTLSGGESFIAALSLALALGEVIQQESGGINIDALFVDEGFGSLDANSLDVAMNALESLEGESRLIGIISHVTELRDNIPDQLQVEPAGTGRSRLKILHSA
>NZ_CP052065.1|WP_016381496.1|750696_751818_+|exonuclease-SbcCD-subunit-D
MRFLHTADWHIGKKLNDFDLLEDQQAVFEQLVETAETHKVDAIIIAGDLYDRALPSEAAVSVLDNMLIKLNRDHGYPLLVISGNHDSAVRLRTGRAWYAATKMFVNTQVAEAFTPIELDGVQFFLLPYFEPFAVRDYFQDKTITNVAQAIRPIVAKMKTLFKPDMRHILVSHFFAAGTDHSASETKVNVGGLDAVPLDDLAAFDYVALGHLHNHHALHGEPKIQYSGALLKYAVSEAHQEKGVYIVDTETMDREFVPLKPKHDLIELKASYADLTAPAYYQQQDRDAYIGIDLTDTQVIPNVMAQLRQIYPRIISLRRENGVNAVKPLQERQRDLDPMSLLQTFFKDMTQDDLSAAQIKWAKAGLTTAKKEQA
>NZ_CP052065.1|WP_003563745.1|750009_750636_-|HAD-IA-family-hydrolase
MNTFIFDIDGTLLDNVEAYLYGLQKTLRRHGREVPIHELTWTNGRAGVDSLAELGFSAAEIPEVHEQWREDSKEFLTDIAWFPGMQHALNQLKQTYKLGLVTSKDKTQFIEEDKKFHFSPYFDAIVVAGEAKRNKPFGDPITLARERLGSEPASTIYIGDTPTDAQAAADAKVAFALAGWTTPPSNEVMPRVAVLQQASDLLTLPTLA
>NZ_CP052065.1|WP_003563743.1|748788_749565_-|DeoR/GlpR-transcriptional-regulator
MLKDERLLTIRNLVDRKGIVTVNEIGESLGVSTMTVRRDLEELADQKELVRIHGGAQSTNFKPLTELSRNEKRSIHVNEKRKIAATIAALIIPGDTIYIGPGTTNEMIAQYLKKPDVRIITNSLPVFQSFQDRADFFSLQLIGGRLRARSGAFIGSLANEMLAHLTTTKAFISVNGIADNHISNASPEEGQTQRIALDNAGMKLVVADHFKLNRQDFYSFYDLDQTDGLITDPGISRDDLQHYNTFTHVITDKTNKGE
>NZ_CP052065.1|WP_003569175.1|748355_748784_-|galactose-6-phosphate-isomerase-subunit-LacA
MDVIIGADKDGFAMKEQVKKYLEDHQYRVKDMTPEPAEDFVDSSLAVTKELLSGDAHKAIMFDRYGMGSAMASNKVKGMVTAVVEEENTAHMTAEHNGAKAIAIGTGITGYDRALVIIQRYLDTEYAGGRHQIRLDMLEKMI
>NZ_CP052065.1|WP_003569173.1|747792_748311_-|galactose-6-phosphate-isomerase-subunit-LacB
MIIAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADLGIVMCGTGIGISTAADKNDGIRAAMCDDVTSAVYAREQLNANVLGIGGATVGIHMIQDIVKAYLDATYKETPQNKKIIDKIDNIAKPNPEQKDNPHFFDTELEKWAEGVYHD
>NZ_CP052065.1|WP_003569171.1|746752_747754_-|tagatose-bisphosphate-aldolase
MTVTLTAGQYKHLQQLSDDNNIISALAIDQRGSLKKMLAAAANKPADETTIVDFKKAVSEELTKYASSILLDPEYGLPAAKVRAPQAGLLLSYEKTGYDATEPGRFPDLIDDQSALRIKNEGGDAVKFLLYIDPDEPDAINDRKYAFVERVGAEAKANDLPLFLELVSYDGTLNETGTAAWAKVKPDKVIKITKEFSKPQYNVSVLKVEVPVDQKFVEGFTDEGVTPVYTKEEAAKYYKAQSDATDLPFIFLSAGVSNELFLEELKFAKQAGSTFNGVLCGRATWKPGVKPFAAEGEAAGKAWLQTEGKANIDRLNKVLAETATPWTDKVEHA
>NZ_CP052065.1|WP_003569169.1|745699_746638_-|tagatose-6-phosphate-kinase
MILTVTLNPSIDVSYPLEHLKIDTVNRVKTVRKTAGGKGLNVSRVIHMLNHEITATGFIGGYFGKWLENQLDRDGIDHDFFPIDAETRSSIAMLHDGGEQTEILEAGPTIAAEDAEKFLSHFDSLLDKSDLITISGSMPQGLPADYYTQMIAHAGQKNVKVLLDTSGATLKSALEAPVKPLLIKPNEEELGGLLNRDVDKTDYTALKHDLMDPIFDGVDWIVVSLGAAGAFVKHLDKFYHAAIPKIKVVNPVGSGDSTLAGLAMGIHDGKSDEDIMKTAMTTGMLNTMEAETGFVNPAKFDEYFAKVTIESY
>NZ_CP052065.1|WP_003569168.1|744997_745678_-|DUF4867-family-protein
MSTIDQLRTLNPDKTIHSLDEAAFADYGVTYAQYDVSELKTFMDQHVTIPAPSEANLYVPSNPDMEKIPVVQQIGRDVYAGLPIEAGECAGHAEALTAVEFHQGSEVNVFFTDVVMVIGKRGQMHDDQFNAEKDAKLFFVPAGTVVEFFSDTLHYSPCEAHASGFKFIVMLVRGSNQPLPADYHTDNKLIVKQNKFQVVHASRTDKIKQGIQVGVTGELVRVKHLN
>NZ_CP052065.1|WP_003573966.1|755932_756409_+|Hsp20/alpha-crystallin-family-protein
MANEVLNRRNNELMNNVNDPFFDNLARRFFGPVSDWMDWATPAITSTAVNGLLTDVKETKDAYEVHVDVPGIDKNNIKMNYHDGVLSINVHKDDITDHADKNGNVMMSERNYGTMSRSYQLPNVDASNIKAAYQDGVLNITMPKLTESKESGHNIEIQ
>NZ_CP052065.1|WP_016363499.1|756402_756636_-|hypothetical-protein
MFRFLTEPFRALQKNHPNDHTYRWDDFNDSMITATAAILIDFCLLTHGFCPLTAEVPLLFMLAMQSVNLGSTDDEHY
>NZ_CP052065.1|WP_003569186.1|756965_758069_+|A/G-specific-adenine-glycosylase
MTNKLMNWPPEKVAAFQKALLNWYDQHARQLPWREDHDPYHVMVSELMLQQTQVQTVIPYYERFMNQFPTVGALAKAPEAEVLKAWEGLGYYSRARRLQQAAKQIVADYGGVWPQTSETLQTLSGIGPYTAGAIASISFGEPVPAIDGNAFRVFARLFKVDADIARPQTRQIFFDLIQPLMPKDRPGDFNQAVMDLGSSYMSANHPDPAHSPVRDFDASYRDGVVSAYPVKTKKPRPVLHRYFALVIRSEKGYLLEQRPSTGLLADLWMFPLVDMADLESTMMSAQLDEVSTLFAASSGMQLTFADLGAKTVKHTFTHQQWQLTLIGVETAASDLSFLPARWVKADHFSELALPTVQKKLNAALGMN
>NZ_CP052065.1|WP_003569189.1|758279_759065_+|alpha/beta-hydrolase
MTVNVTRDIAYGDAALQKLDFYEPEKSNGAAILDIHGGGWFRGEKNKEGEMAERFAALGYTVAVPNYRLAPEAFFPAARDDVLAAFSWLREHTKGLQLGVFGSSAGGSLSVDVGLAEGVPTVSWSGIFDIRQWFADHPAVVAQPDTKTDFVKTASAKIDQGGRNDPFYKWFILNYVDSDETKFPEVEPFDRLTAQAGPLYLANSQEEIIPISGIYQLAHAAEKLGLPVTLQSIPGGQHAEGYLDEAWQGTVAFFAQYLLKG
>NZ_CP052065.1|WP_003563776.1|759067_759736_+|NAD(P)H-dependent-oxidoreductase
METLVVVSHPEIEKSDTQQFLKASAASLSQVVWHHLDSRLPFDVTAEQQAITSADRLIFQFPLYWYMAPASLHQWLTDVWLKQFVYDARGGLLHGKSLGFVVTFSQPATAYQLGGSVGFSISQFLTPYAALAAKTGLTLLPPLTIAQFANQTDLEHQQLLVRYQQYLTLDHPDRPDEQAQWFIDRLSGNADTQLLADQLAAQTDDIDRLRLTLHELKAGESE
>NZ_CP052065.1|WP_003563777.1|759732_759912_+|hypothetical-protein
MTTDEQWLVNAAAVQEKQATSYENAAFFRALQAFVTQQAKRRESLEGEIDGRSWNHEQW
>NZ_CP052065.1|WP_003569192.1|759989_760514_+|DUF308-domain-containing-protein
MQTMFDRLQRWSWLRGLLMILIGAWILIAPRQVYRSFIWIVAAVLIIAAIPKLIDGFSARKASGTYGTSLFTGGFYLLLALMVPVIVRPLMSLGPLLLGIVLMIYGVNKILSARNRQQFVNVSVWPTVIYGVVLLIMGFIMALNPFRTVMMVFSFFGGLLVVMGILQLFTRPRA
>NZ_CP052065.1|WP_011674244.1|760747_761380_+|hypothetical-protein
MHKFDWREVERDEYSRSEEPSFVKLTTRSYITAMGVAPDRVTDQAFTSLAAAVTQIAERISEGPDAGIDIPNFKAYHPYPLQAVWSGGDKISKRHIFRLWLKQPLFIHEDQFEAALTQLHFEPAIAQQLHLEQLAEGFEIQSFNSTPLTDEAPAIARIQTVINRDHLVPKFDDRHREVYLEGYQGEVPVLYRVPLDENFGEVGDEQVAYN
>NZ_CP052065.1|WP_003563790.1|761451_762273_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MANEFPQVMTIGGTDSDGSAGVQADLHSFFMRGVYGATILTAAVAGNSYGIQDSMVMPLPFIDAQFKSLAADLHIRAAKTGMLADRALVQNIIKNWQQYDFGALVVDPVIITKHGAMLLEQDAYDAVKNELIPLATVVTPNHYEAEHLTGMKLDTDAQTEAAAHQLQDSGAKNIVLKGAHDDPTQPTVRDFVLLESGKSFWLSEPYHATDRVNGTGDTLSAVITAEIGKGNSVEEAIRIAKRFTNQAIGHPIAVGHQYGPINHWANKIVYPQF
>NZ_CP052065.1|WP_003563792.1|762446_763508_-|hypothetical-protein
MLNLNDAHLAALITKPLTVAQARQQIGTAYQQEADRLANSPLWESNDEALTALLASYTNLLGNKLYQALQNLTSIPTPFLQTLWLQDTTADAHHSEIAVIQTTQDDNNTLLTIVDPLSDDAKLKAVNLPTLLQITAADSNAMTYDAETVKALSALAKALNQGGYRFTTVDETVLQPVNGLSFKTRFDNLKPLVAKKAVIKAGDFSIGTSLDQDAKVLGYQVLDEDGHDWQDLGSEEVKNDRFEWASTTVPQELVNHRLKLIIRVSAGSNSPALDELFVIASNNAILMRQGAKAGVYELPLPNQKIFTVMINPANNMVYLKYPDPETQIIELNHQYPFIGEWLKAVLPQKRAFN

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Crispr_ID: NZ_CP052065_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052065_2

1994197-1994314

Orphan

Consensus_repeat	Method
GGTCCTTATGTGTAGGTTTCTGGGCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052065_2

>merge|NZ_CP052065|2|1994197-1994314|CRISPRCasFinder
GGTCCTTATGTGTAGGTTTCTGGGCCAGCAAACGCGTTTATGAGGAGCGTGAGCTGGACCGGGTAGAAACCGGAGCATAAAGTGGCCGCGGTCCTTATGTGTAGGTTTCTGGGCCAGC

>NZ_CP052065|2|2|1994197-1994314|CRISPRCasFinder
GGTCCTTATGTGTAGGTTTCTGGGCCAGC	AAACGCGTTTATGAGGAGCGTGAGCTGGACCGGGTAGAAACCGGAGCATAAAGTGGCCGC
GGTCCTTATGTGTAGGTTTCTGGGCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052065.1\|WP_003579780.1\|1987275_1988421_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
NZ_CP052065.1\|WP_003566823.1\|2003856_2004024_-\|FeoB-associated-Cys-rich-membrane-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003660548.1\|1984640_1986107_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP052065.1\|WP_003579795.1\|1991642_1992470_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|163441
NZ_CP052065.1\|WP_003579810.1\|2006157_2006649_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP052065.1\|WP_003566828.1\|1997731_1998154_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003566083.1\|1982613_1983441_-\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NZ_CP052065.1\|WP_003579778.1\|1983443_1984637_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP052065.1\|WP_003566829.1\|1997217_1997592_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003566825.1\|2001486_2001804_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131249
NZ_CP052065.1\|WP_016380531.1\|1986195_1986414_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003579808.1\|2004059_2006171_-\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP052065.1\|WP_003579799.1\|1994473_1996792_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|213222
NZ_CP052065.1\|WP_050569249.1\|1998776_2000147_+\|melibiose-symporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP052065.1\|WP_003566103.1\|1988527_1989325_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|223422
NZ_CP052065.1\|WP_003566099.1\|1986549_1987251_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP052065.1\|WP_003579793.1\|1989337_1991314_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP052065.1\|WP_003579797.1\|1992531_1993998_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_CP052065.1\|WP_003579806.1\|2001974_2003642_-\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NZ_CP052065.1\|WP_003579803.1\|2000241_2001378_+\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|376461

Protein	Function_ID	Function_description	E-value
NZ_CP052065.1\|WP_003579780.1\|1987275_1988421_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	5.10533e-157
NZ_CP052065.1\|WP_003660548.1\|1984640_1986107_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP052065.1\|WP_003579795.1\|1991642_1992470_-\|metallophosphoesterase	gnl\|CDD\|163441	TIGR03729, acc_ester, putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.	7.77927e-119
NZ_CP052065.1\|WP_003579810.1\|2006157_2006649_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.38673e-15
NZ_CP052065.1\|WP_003566083.1\|1982613_1983441_-\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	0
NZ_CP052065.1\|WP_003579778.1\|1983443_1984637_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	7.06447e-42
NZ_CP052065.1\|WP_050569249.1\|1998776_2000147_+\|melibiose-symporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.70848e-43
NZ_CP052065.1\|WP_003566825.1\|2001486_2001804_-\|hypothetical-protein	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	6.08924e-12
NZ_CP052065.1\|WP_003579808.1\|2004059_2006171_-\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP052065.1\|WP_003579799.1\|1994473_1996792_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.12386e-103
NZ_CP052065.1\|WP_003579803.1\|2000241_2001378_+\|alpha-L-fucosidase	gnl\|CDD\|376461	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase.	1.10349e-71
NZ_CP052065.1\|WP_003566103.1\|1988527_1989325_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|223422	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism].	8.5867e-80
NZ_CP052065.1\|WP_003566099.1\|1986549_1987251_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.02871e-84
NZ_CP052065.1\|WP_003579793.1\|1989337_1991314_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.36803e-97
NZ_CP052065.1\|WP_003579797.1\|1992531_1993998_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.05047e-153
NZ_CP052065.1\|WP_003579806.1\|2001974_2003642_-\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	6.53618e-06

>NZ_CP052065.1|WP_003579797.1|1992531_1993998_-|peptide-MFS-transporter
MNNSKDRTFMGHPRGLLTLSMTEFWERFSYYGMRAILIYYMYYAVEKGGLGFDQPTALSIMSIYGSLVYLSATIGGFISDRLLGSRRTVFWGGVLIMLGHIVLSLPIGATGLFGSIVLIVLGTGLLKPNVSEMVGSLYPEDDLRRDSGFSIFVMGINFGSLIAPIFVPWMADKVNFHAGFSLAAIGMFVGLIFYVIDGRKYINPADNTAPDPLKPEDVRPLVIRVVVAIAAVGVILLAMAGFNALTIANVISLITLIAIGLPIWYFVLMIRSKKVTKTERSRVIAYIPLFLAAMIFWAIEEQGSVVLALFAAQQTKLDFGFFKILPGNFQTLNPLFILLYGPLFAWLWMKLGKRQPTSPKKFYLGLIFAGASYLWMVIPVILFGSSAKVSPLWLVMSWAIVEIGEMLISPVGLSVTTKLAPKAYSSQMMSMWFLADASAQAVNAQIVRFYTPNHEVAYFAIVGLVSVGFAVVLAFFTPRIEKLMQGVN
>NZ_CP052065.1|WP_003579795.1|1991642_1992470_-|metallophosphoesterase
MVKIAFSVDNHFDVNRVDGFEMLKKQAAYLVEHDYQIYVNAGDTYNDFTKSLAYFRALQAEVGSAVTIRFLAGNHDMVNGATYDEIQSAVDPLYLHEKILPVPGTNAVIIGNNGWYDYSLGQLGNMKTDAEYAQWKRAFWIDSAIDAPVTDAARMQRVLTTTKAALQANQTHQMIYVTHFVPIREAMVYTVDRPPWQMATALMGSAKLGDLLTGKVSAVVFGHEHFRDAPKLLSGTTYYHQPLGYGLKRLFEWQSQDWWTEWRQTLVTLTVPTLS
>NZ_CP052065.1|WP_003579793.1|1989337_1991314_-|S9-family-peptidase
MAIKATDLFKLVSLSYPSATDDGYFVQENRISEADNTYYQRICFVNHRGGTIAYGFDQKHDRHPLLSPDQQWLAFLSQASDKTTQVFVQAVNGGTAKQFSAEKEGVSYFGWQADSQALFIQTTVGAKPKKTDKQWPQPVTVSRVPYKLNGVGLLPEHVAYELRVQRLRQKTSRLVMGREHEFEVGAISPDGQTLAFTAERLPDDPNDFSQATYLLNLADQQVTMVNDQLPQAALSPEAFSADGKQLLLVGSDNHLPNVSQSHLWHYDLATKTLQDVADDIDFDIPGHVNGDFQQDLSEKVADFATADYYLTIGFDHGKTSLYAGGPDEQLTPLIGGRRHVTDYALTPDHHGVVFTESTMTVPSRLSYFDLATEEEHVIYDPNRRVTRDMGLVTPQTFNFQRDGFEIEGWYFPPQQATASHPAILYVHGGPAVGYGYTFFHEMQFLAAQGYGVICPNPRGGLGYGEAFTAAVIKHYGQGDYEDCMASVDEALKLDTTIDPDRLYVAGGSYGGFMTNWIVTHTHRFKAAVTQRSIANWLSMYGTSDIGYFFTPWELEGKWTGDLSDVKSLWDFSPLAHIDFAQTPTLVMHSENDQRCPIGQGEEFYIGLKLHGVDTKFMRFPNATHELSRSGLPNLRLARLAALVDWFKTHSATEESHQA
>NZ_CP052065.1|WP_003566103.1|1988527_1989325_-|pyrroline-5-carboxylate-reductase
MTIGFIGAGNMARAIITGLLAKNAVTPEEIVLHGGQPIHYEPYAAKIGAKAVASNQAVADTADIVFLAVAPKLGVPILKTIGPTLKQRQVPIVSMLTGVSLATLEDALGSQDQPVLRIMPNVNVAINAGMTAYAANDSVAGQLDGLLDLLNVLGKTMALPEDQFSTFVALAGSSPAFVYLFIDSLSRAGVKYGLTKKQATAIAAQAVMGSAQNVLASEQSPFDLIDQVSSPGGTTVAGLLAMEQAGLMSAVIKGVDATIAKDRQG
>NZ_CP052065.1|WP_003579780.1|1987275_1988421_-|N-acetylglucosamine-6-phosphate-deacetylase
MTVTVLKHATIYTGLERIDDGYVRFDDKILAVGDMFDYRAQSGEQTFDLQGKTLIPGFIDVHAHGGYGFDAMDGDADQIDEMATKMMTHEGVTTLFATTMTQSTENIDKAMRGVKQAAERNHIIQGVHLEGPFISKVFKGAQPEEYIKNPNVDLVKQWQELSGDLVKLITYAPEDEGSQAFEDYLLAHNIVPSVGHSNATREQMLHSKATHVTHLYNAQRGLRHREPGVTGHAMLEDNMYCELICDGFHIVPDMLRLAFDQKGPERIELVTDSMRSKGMPEGKSELGGQTVYVKDKQARLKDGTLAGSVLMYKDAFKNAMSFMDASLFDAVEMSSVNQAREFNLTSKGTLEVGKDADINVLDRNNDLVATYSYGVKHDTED
>NZ_CP052065.1|WP_003566099.1|1986549_1987251_-|GntR-family-transcriptional-regulator
MDAPVYIQIHNAIRADIEAGKWRVGDRIPSERDLAVTFKVSRMTLRQAIQTLVDEGILERRVGSGTYVANQKVQEKMSGVTSFTDLMQAQGKVPSSKTVSYHVAQPTSSEVEKLKLEPKEQVLRMERIRYADKIPISFETAAVPYNLVKNFTKKEMTASFYHTLEKKGGYVLGGAQQTVSAMLASERISEYLDIKRGEAILRLRQVSFLQDGTPFEYVRTQYVGERFEFYLER
>NZ_CP052065.1|WP_016380531.1|1986195_1986414_-|hypothetical-protein
MREQAQKPAHKDLRQEWAKASRQCAGSETREQAQKPAHKDLKPKWPKPSYLGLRPLMFRFLTAPVRALSHFL
>NZ_CP052065.1|WP_003660548.1|1984640_1986107_-|nicotinate-phosphoribosyltransferase
MMTTQLGEGLTLHTDFYELNMMNTFFEQGISERNAVFEVFFRDLPFGSGFAVFAGLEHVMDYLNHLKFSEDDLAYLQSQTDYSDAFIDYLRHLKFTCTVKSALEGDLVFNNEPIWQIEGPLAQAQLVETAVLNMINYQTLVATKAARIRSVAGADPLMEFGTRRAQETAAALWGTRAAYIGGFNATSNVLAGKEFGIPISGTHAHSLVQAYGNDYDAFKAYARSNKDVVFLVDTYDTLRSGVPAAIKVANEFKGKINFLGVRIDSGDMAFISKRVRQQLDDAGYESAKIYASNDLDENTIQNLKMQGAKIDIWGVGTRLITAYDQPALGAVFKLVSIEDAAGKMRDTIKLSNNAEKVSTPGKKQVWRITRQDDGKSEGDYVALADETIDTQRSLYMFHPNFPYINKTVKNFEAKPLLQTIYDKGQQVYHTPPLQEVQAYATRSTNALWDEYRRILNPQDYPVDLSQRVWDNKMDLIKAVKSAVADREE
>NZ_CP052065.1|WP_003579778.1|1983443_1984637_-|serine-hydrolase
MRASKRRSQYRWLILSLLVGLVVGIAAYASYDHFYLKPQIEAKEERTRRKYETELNRHRAVEQRLQNETRTATSATDKLMQPVNQAEAKPFMKILEANHFSGTALMIRRGKIILNTGLGYADAESGRLNGPETLYQIGSIQKGLTAVLLMRLVEQGKVHLSDPISKYLTGIRTGKQVTLRMMLNMRSGLSLTRAQSASLSDAGIVRWSIANLNYGTVRYDYQPVNYVLLAGVIEKVTGRLYADLIQQEIFKKLKLTHSGFMPELFHESNQAFGYSGPINNPYAKRYTEPSVNYNRELGTGNIYTSAGDLYQIIKAVNQGKIISTASLKALRNLDNGQYTAGVYNFGSYTLTHGVVASQSAGTMIDTSGQNAVVLLANTDKITQGLIKNLYLNMIKGV
>NZ_CP052065.1|WP_003566083.1|1982613_1983441_-|ammonia-dependent-NAD(+)-synthetase
MRPLQAEIIKALGVQATIDPETEVRRSVDFLKAYLKKNTFLKTYVLGISGGQDSSLAGALTEKAMQEMRAETGDDAYQFIAVRLPYGEQADEADAMAAIDFMHADVVKRVNIKPSVDAMVAAVEADGSKISDFNKGNIKARMRMIAQYAIAGNNAGAVIGTDHAAEAVTGFYTKFGDGGADLTPLYRLDKRQGAALLKVLGAPAHLYEKAPTADLEDNRPALPDEVALGVKYKDIDDYLEGKDVSDQAAETIEKWYQKTAHKRHLPITVFDNFWK
>NZ_CP052065.1|WP_003579799.1|1994473_1996792_-|ABC-transporter-ATP-binding-protein/permease
MLDLKHIKKYYQTGDYTTKALDDVSVQFREQEFVAILGPSGSGKTTLLNVIGGLDRYDSGDLLLHGRSTKNFKEADWDAYRNNSVGFIFQSYNLIMHLSILENVELGLTLSGVSAADRRKKAEAALTKVGLKAHMGKQPNQLSGGQMQRVAIARAIVSEPSILLADEPTGALDTETSEEIMRLIADLSRERLVIMVTHNPQLAHEYAERTIEFKDGKILSDSRPFKDEEKTASFDLHRTKMSYFTALKLSFTNIMTKKGRTFLTAFASSIGIIGIAVVLALSSGFQKQIDNTQAETLAQFPITISTNATSLTAGAADNTKTSTFKTTSTVVAKQSASDKAQHTNKLNQKYIDYVNGISKKLTDNIGYTYGTGMNLLRDVNGTIKSVQFSTAKPSSNQTQRGLASASSSVYPVDREGGTSYLKKNYEVVAGSYPKHDGDVILIVDRDNSTNINALKNLGFDVKDGQKVKFNQIVGTKIKAISNNAYYQNVAGNVYVPTKDYANAYKQNDNRELTVAGVLRTRSKTSDGLLSQGFAYSDRLTKDLVALNKDSDVVKAQRASDVNIFTNQSVDKATKDQLITALGGSETPTQITIYPTSFKDKDKILSYLDKFNHGKKKADQVVYTDLAGTISSMTGGIMSAITIVLVAFAGISLVTSMIMIAILTYTSVLERTKEIGVLKALGARRKDITRVFDAETIILGVSSGILGIIIAWLLTFPINAILYSMTELPNVAQLNPIHAVILILISTILTVLGGHIPARMAANKDAAIALRAD
>NZ_CP052065.1|WP_003566829.1|1997217_1997592_-|hypothetical-protein
MAVWRMMFARPQFKHRQIKRMVDDLNREGNFGGMPIHRITLTRQTRELIYVDLEFQLTTGLTQPLFEQMAKYILVAVAGLAHAPQPIYLAAMANPFAKLNISYYIYPDHSLDLIYWQPLLREPT
>NZ_CP052065.1|WP_003566828.1|1997731_1998154_-|hypothetical-protein
MHTRCQEPNYVEVVNQNLERLLVFETVFKEYVHTCKNIEKGNCYASESLDHLRLYFTKNVMKFCTFVDSVDAEAAPCNYAAFHKVLVNGLRGIRGGVLNMLQAIGTDKVDHDRFAAGLAEQQAARAEIDTAFSKILDPIF
>NZ_CP052065.1|WP_050569249.1|1998776_2000147_+|melibiose-symporter
MGLMSTTAYYLYTAVLMMFITDYSGIYSGVPGKAAAVATTLLFVGRLWDAVNDLWTGYLIDISPRTRWGKFKPYVLIGSLLAGILGMMLFHIPQNFSNFGKEVYLYIVYFLFMFAATIIVTVPLTSTMSADQEVRAKLISWPRITSNIVGVVFAFFMAIATYLGTKRNPNIPLTVDLIVIPFLILSLIGIVMVKEGPVTEEAKPPRLRDIGQMIKINHPFRINLYFTFVGGFVWALLTATSLYYIKYAFGVKNLGTQSMYFGLLTLITLVAGTLISQKAMQYISAIRGVQWCYLAMAPFLVIMFIINEIHVIDNPWVFYLLIGIVMTIAGAQFVPANLIIMETMDYNRLKLNAGMEATINAVNMFLQKLQSGLATIGVGAALLIVGYNAQTLEKASHVPDNLLQSLGVVLFAIPAVFSFLAYLIARHYPLQGAARDEMYAALAAKRVTNTQSSKSK
>NZ_CP052065.1|WP_003579803.1|2000241_2001378_+|alpha-L-fucosidase
MTKPSAVNIHRTNPPDWFKQADFGIIIHWGPYSVPAYAPVNIPDYGTLIKTKSLGYLFEHQPYAEWYGNSMLLPNSPVAAYHRTHYGNTSYADFAKTFKQTAQNVDVQAWAEAFANAGAKYVVIVTKHHDGFVMFDPHTKNPYEPDYHLNFDFVGELAQAVRAHGMRFGTYYSSLLDWTFPHLPIKDYGSFLLGNDKSQTYKDYVWRQWHELIDRYHPDVLWSDIGYPDDHRLETLFKYYYQQVPEGLVNDRWQQFPDWMRTSWIRPIFNLVAAQVIKRDQHHSDDLSEVKYYDYRTLEYRTDWPQTNRYFEMTRGMDKSFGYNRLSRPEDYITADDIKQLIAELGSKRGRLLLNVGPDMNGQIPSAQLSILQQLSDR
>NZ_CP052065.1|WP_003566825.1|2001486_2001804_-|hypothetical-protein
MAIHFVIYEKPNCESCRLTKRWLAEHGQHFRTTNHRGESNLVDINANDPLKRAWSHQKIVKFREAGYDRFPVVRVRDDATGDVLATWSGFRPEALASWTAINQLG
>NZ_CP052065.1|WP_003579806.1|2001974_2003642_-|phosphoenolpyruvate-carboxykinase-(ATP)
MTSKQSFSSSDITSQSGYFSALKATVETAFYGENVKQVTTIAQAYALAKTAPGVIITDLPIKHTAELGLPPDAKVLVANDGRVVGRTAAARQIIGQPDVDETKLAAIAREAVFLGSRKTFLRGDVTVGLSSDFAIKAHLMLPEAYANNLYTYLLNFQIDTPQRNAEYEQSRPLPEDDIYLYADPDWHDPAYPNGVAVFDPTHNAAIVLGLRYFGELKKGTLTLAWATAHRNGFVACHGGMKQYTRQDGDFTMAAFGLSGSGKSTITLASHGDQYPVKVLHDDAFVIDRQTGATTALEPSYFDKTQDYPLSDPGIQYFLTVQNVGVTLDAAGKKTLVTQDIRNGNGRTVKSRYVTPNRVDHLTESIDAIFWIMKDDTLPPVVKLEDPDLAAAFGVTLATKRSTAENVIGDVDRDHLVIEPFANPFRSYPLGEDYQDFHQLFEQRQTACYILNTGSYNGQNVKPADTLGAIAKIVDETAAFKPFGLLPKMRYLPLSGFNVDFGDNDYRARLRQRLEDRLAFIATKDVDHDGYDRLPIDASRALEDVIAALDQQAAAM
>NZ_CP052065.1|WP_003566823.1|2003856_2004024_-|FeoB-associated-Cys-rich-membrane-protein
MATWIIGGIVVLIIAVVAYRTFFKKNKAGCSQCEEVGCPLIDHAKMVQANNRRKA
>NZ_CP052065.1|WP_003579808.1|2004059_2006171_-|ferrous-iron-transport-protein-B
MAIRETLALVGNPNSGKTTLFNALTGAKQHIGNWPGVTVERKSGRLKADNALVIQDLPGTYSLSPYSSEEIVTRDFLLNDQPDLVLNVVDATNLERNLYLTLQVMETGRPLIVALNMMDVLVKTGHRTINLKKLSYALQVPVIATTATKPAALQELVQTIQAPLPKPYAFPEYDARLESALTMLEDVIDQKVPADRLRWYAIKVFEKDPQVVKQLAFSSDEQHQMNEILRTAEHVFDDTTDSIIVNARYDFIARVIAMCVVDKDDFVMSMSDKIDRIVTDRYLALPIFVLVMWAVYYLSIQTIGTIGSDYLNDTVFGGWLPSVVGGTLKSWAVAPWLSGLIVDGLIGGIGSVLGFLPQIMMLFLCLGILEDCGYMARIAFVMDRLFHRFNLSGKSFIPILIATGCGVPGIMATRTIESEKDRRMSIMLTTFMPCSAKLTVIALVSGTFFPSTSWVAPSAYFMGIIAVICSGIFLKKTALFAGPPAPFVMELPAYHLPRLTNLYRSVMSRARAFVQKAGTIIFLSCVLLWFLSNFNFGLQMVDENDSMLRGLGTVIAPVFAPLGFGDWHATVATLAGLIAKENCVGTLHISFGAGSASGFGQALRATYPAMAGYAFLVFNLLCAPCFAAIGTMYKEFGDARWTWRAVGYQTGVAYLLTMLIYQGSLVVSGQASVMSIGLVLVAILVIVYGLLIKRPVPAIASSY
>NZ_CP052065.1|WP_003579810.1|2006157_2006649_-|ferrous-iron-transport-protein-A
MQALIDVRESGAYLLMSVGGSGALRRHLAEMGLVVGKKVTVVQPASKLSGMVIFFQGQRLAISDEIASLLVVRPFAMDADTPAIALADLPLRQAGLIRTIKGDPPLRHRLMDMGLTKGTLVKIHQIAPLGDPIELAVRGYKLSIRKQDAAHVLVTEVTSDGDT

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Crispr_ID: NZ_CP052065_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052065_3

2343223-2345898

TypeII-A

Consensus_repeat	Method
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CRISPRCasFinder
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CRT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	PILER-CR

40 spacers

csn2,cas2,cas1

The CRISPR arrays of NZ_CP052065_3

>merge|NZ_CP052065|3|2343223-2345898|CRISPRCasFinder,CRT,PILER-CR
GGAATTCAACTGATTGATTCGGCATCTACCTGAGAGCATCAATTGCGGGAAGAACTCGAATTTCCTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCGAAAGTAGTTGATCGTCCGACCTTCTCGGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACACAAACATCTGCGCAACGAGGAAACTGGGTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCCGGATTCAATCGCCTGAACGTAAGCCTTTGCTTTTGAACTGATTGATTCGACATCTACCTGAGACAGTTGTCAGGATTAAGTGGCGCTAACCCTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCCTTGCGCACGGTATAACCGTTGACGTAAGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCAGAAATGCAACGTTCACAACGTCAATATGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGATTGACTCCAAGACGAATGATGGTTTTACGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGACGCCTCCAGTATTCACAGCCAAGGTTAGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAGCGTATATCTATCGTCAGCCCACAATCCCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCTCGTAAATCGCCGATAACATCAGTGAGATGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCTGACTAACATCAAAGATTTGCTCACCTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTAATCTTGATTATGATGCGAGTTATATTGAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAAACGCTATTGCCACACAAGACCTTGAAGAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACATAACCGGTGTAAACAGTTCTTCATAAAAGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCCGGCGTTAGCTTTTGTGAGGGTACGATGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGGCGACCCCTCCAGCCAGTCCAGTGGTTAGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCGCGCGAGCACCCAGTTGGCAGCACCGTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACACTTGTTAGTTAATTCATCATTAGATGAAGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACACCAAGATACAACTAACAATCAGAACTCAAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCGCGCGAGCACCCAGTTGGCAGCACCGTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTGACGTTGAAACCCGTGTCACAATTGTCGAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTACGGTAATGCGGAAAATTCGCGGCGACGTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCGGCTATAGCTTCCACCGCTTCAATTGTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGGACGTCAGCAATGAATCGCTGCCACCAACGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTGATCAAACCATCGATGCAATGTTCAGGCGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTGATGGCTATGATTTTGGAAGTGCGAAATAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCAGTCGTAATCTTGCCAATCCCCAATTTTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAAAAATGACAAGTTAGCGCTACGCCACGCTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCCTCCTTTAACTTTCGAAGAGGCTATTTGAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAATTTGGTACTATCATGCTGAATAAACTCTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCCATACGGCAGTTTCATCGTCTTAAATTCGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAGATGGGGTACCCGTATATCGAGGTGCCCCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTGATCAGCTAGTTCTTCAGCATTCGAAGTCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGTCTGGTACAAATATTGGCTTATCCTTCGGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTTGGCCCGAAGCGGTTAGATTTGCTCGTCCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAACCGCTCTTGAAGAACTTCTGTAAGGTTGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTTATTGGTACTAGGGTTTATGTTGCTACTGGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCGCGAAAGACATTGATTCCAATATGAGCAAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCGCTGCTAATTTCCGAATGGCTTCGTTGTAGCTCTTGAACTGATTGATTCGACATCTACCTGAGAC

>NZ_CP052065|3|3|2343223-2345898|CRISPRCasFinder
GGAATTCAACTGATTGATTCGGCATCTACCTGAGAG	CATCAATTGCGGGAAGAACTCGAATTTCCT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGAAAGTAGTTGATCGTCCGACCTTCTCGG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACAAACATCTGCGCAACGAGGAAACTGGGT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCGGATTCAATCGCCTGAACGTAAGCCTTT
GCTTTTGAACTGATTGATTCGACATCTACCTGAGAC	AGTTGTCAGGATTAAGTGGCGCTAACCCTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCTTGCGCACGGTATAACCGTTGACGTAAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CAGAAATGCAACGTTCACAACGTCAATATG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GATTGACTCCAAGACGAATGATGGTTTTAC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GACGCCTCCAGTATTCACAGCCAAGGTTAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AGCGTATATCTATCGTCAGCCCACAATCCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CTCGTAAATCGCCGATAACATCAGTGAGAT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCTGACTAACATCAAAGATTTGCTCACCTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TAATCTTGATTATGATGCGAGTTATATTGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AAACGCTATTGCCACACAAGACCTTGAAGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ATAACCGGTGTAAACAGTTCTTCATAAAAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCGGCGTTAGCTTTTGTGAGGGTACGATG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGCGACCCCTCCAGCCAGTCCAGTGGTTAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGCGAGCACCCAGTTGGCAGCACCGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACTTGTTAGTTAATTCATCATTAGATGAAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACCAAGATACAACTAACAATCAGAACTCAA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGCGAGCACCCAGTTGGCAGCACCGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGACGTTGAAACCCGTGTCACAATTGTCGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TACGGTAATGCGGAAAATTCGCGGCGACGT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGGCTATAGCTTCCACCGCTTCAATTGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGACGTCAGCAATGAATCGCTGCCACCAAC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATCAAACCATCGATGCAATGTTCAGGCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATGGCTATGATTTTGGAAGTGCGAAATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CAGTCGTAATCTTGCCAATCCCCAATTTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AAAAATGACAAGTTAGCGCTACGCCACGCT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCTCCTTTAACTTTCGAAGAGGCTATTTGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AATTTGGTACTATCATGCTGAATAAACTCT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCATACGGCAGTTTCATCGTCTTAAATTCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AGATGGGGTACCCGTATATCGAGGTGCCCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATCAGCTAGTTCTTCAGCATTCGAAGTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GTCTGGTACAAATATTGGCTTATCCTTCGG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTGGCCCGAAGCGGTTAGATTTGCTCGTCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACCGCTCTTGAAGAACTTCTGTAAGGTTG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTATTGGTACTAGGGTTTATGTTGCTACTG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGCGAAAGACATTGATTCCAATATGAGCAA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGCTGCTAATTTCCGAATGGCTTCGTTGTA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC

>NZ_CP052065|3|1|2343223-2345898|CRT
GGAATTCAACTGATTGATTCGGCATCTACCTGAGAG	CATCAATTGCGGGAAGAACTCGAATTTCCT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGAAAGTAGTTGATCGTCCGACCTTCTCGG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACAAACATCTGCGCAACGAGGAAACTGGGT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCGGATTCAATCGCCTGAACGTAAGCCTTT
GCTTTTGAACTGATTGATTCGACATCTACCTGAGAC	AGTTGTCAGGATTAAGTGGCGCTAACCCTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCTTGCGCACGGTATAACCGTTGACGTAAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CAGAAATGCAACGTTCACAACGTCAATATG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GATTGACTCCAAGACGAATGATGGTTTTAC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GACGCCTCCAGTATTCACAGCCAAGGTTAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AGCGTATATCTATCGTCAGCCCACAATCCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CTCGTAAATCGCCGATAACATCAGTGAGAT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCTGACTAACATCAAAGATTTGCTCACCTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TAATCTTGATTATGATGCGAGTTATATTGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AAACGCTATTGCCACACAAGACCTTGAAGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ATAACCGGTGTAAACAGTTCTTCATAAAAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCGGCGTTAGCTTTTGTGAGGGTACGATG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGCGACCCCTCCAGCCAGTCCAGTGGTTAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGCGAGCACCCAGTTGGCAGCACCGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACTTGTTAGTTAATTCATCATTAGATGAAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACCAAGATACAACTAACAATCAGAACTCAA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGCGAGCACCCAGTTGGCAGCACCGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGACGTTGAAACCCGTGTCACAATTGTCGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TACGGTAATGCGGAAAATTCGCGGCGACGT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGGCTATAGCTTCCACCGCTTCAATTGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGACGTCAGCAATGAATCGCTGCCACCAAC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATCAAACCATCGATGCAATGTTCAGGCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATGGCTATGATTTTGGAAGTGCGAAATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CAGTCGTAATCTTGCCAATCCCCAATTTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AAAAATGACAAGTTAGCGCTACGCCACGCT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCTCCTTTAACTTTCGAAGAGGCTATTTGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AATTTGGTACTATCATGCTGAATAAACTCT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCATACGGCAGTTTCATCGTCTTAAATTCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AGATGGGGTACCCGTATATCGAGGTGCCCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATCAGCTAGTTCTTCAGCATTCGAAGTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GTCTGGTACAAATATTGGCTTATCCTTCGG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTGGCCCGAAGCGGTTAGATTTGCTCGTCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACCGCTCTTGAAGAACTTCTGTAAGGTTG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTATTGGTACTAGGGTTTATGTTGCTACTG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGCGAAAGACATTGATTCCAATATGAGCAA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGCTGCTAATTTCCGAATGGCTTCGTTGTA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC

>NZ_CP052065|3|1|2344015-2345898|PILER-CR
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TAATCTTGATTATGATGCGAGTTATATTGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AAACGCTATTGCCACACAAGACCTTGAAGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ATAACCGGTGTAAACAGTTCTTCATAAAAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCCGGCGTTAGCTTTTGTGAGGGTACGATG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGCGACCCCTCCAGCCAGTCCAGTGGTTAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGCGAGCACCCAGTTGGCAGCACCGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACTTGTTAGTTAATTCATCATTAGATGAAG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	ACCAAGATACAACTAACAATCAGAACTCAA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGCGCGAGCACCCAGTTGGCAGCACCGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGACGTTGAAACCCGTGTCACAATTGTCGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TACGGTAATGCGGAAAATTCGCGGCGACGT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GCGGCTATAGCTTCCACCGCTTCAATTGTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GGACGTCAGCAATGAATCGCTGCCACCAAC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATCAAACCATCGATGCAATGTTCAGGCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATGGCTATGATTTTGGAAGTGCGAAATA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CAGTCGTAATCTTGCCAATCCCCAATTTTT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AAAAATGACAAGTTAGCGCTACGCCACGCT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCTCCTTTAACTTTCGAAGAGGCTATTTGA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AATTTGGTACTATCATGCTGAATAAACTCT
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CCATACGGCAGTTTCATCGTCTTAAATTCG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AGATGGGGTACCCGTATATCGAGGTGCCCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TGATCAGCTAGTTCTTCAGCATTCGAAGTC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	GTCTGGTACAAATATTGGCTTATCCTTCGG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTGGCCCGAAGCGGTTAGATTTGCTCGTCC
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	AACCGCTCTTGAAGAACTTCTGTAAGGTTG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	TTATTGGTACTAGGGTTTATGTTGCTACTG
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGCGAAAGACATTGATTCCAATATGAGCAA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	CGCTGCTAATTTCCGAATGGCTTCGTTGTA
GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052065.1\|WP_003580476.1\|2332844_2334293_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|236580
NZ_CP052065.1\|WP_003586311.1\|2346879_2347785_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP052065.1\|WP_003571227.1\|2356941_2358684_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NZ_CP052065.1\|WP_003580481.1\|2337748_2339380_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP052065.1\|WP_003571221.1\|2353005_2354172_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003584827.1\|2352210_2353005_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003580472.1\|2330442_2331861_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP052065.1\|WP_016382231.1\|2341841_2342942_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003566940.1\|2354395_2354770_+\|YxeA-family-protein	unknown	unknown	gnl\|CDD\|377665
NZ_CP052065.1\|WP_016381600.1\|2339376_2341068_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NZ_CP052065.1\|WP_003586316.1\|2345922_2346600_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP052065.1\|WP_003566944.1\|2354838_2355162_+\|DUF4870-domain-containing-protein	unknown	unknown	unknown
NZ_CP052065.1\|WP_003580480.1\|2336753_2337611_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP052065.1\|WP_003580474.1\|2332151_2332718_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP052065.1\|WP_003580488.1\|2341264_2341690_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_CP052065.1\|WP_003586314.1\|2346596_2346902_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP052065.1\|WP_003584829.1\|2355233_2356961_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP052065.1\|WP_003584830.1\|2358680_2359694_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP052065.1\|WP_076665408.1\|2331996_2332146_-\|acetyltransferase	unknown	unknown	unknown
NZ_CP052065.1\|WP_003580477.1\|2334463_2336302_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919

Protein	Function_ID	Function_description	E-value
NZ_CP052065.1\|WP_003580476.1\|2332844_2334293_-\|family-1-glycosylhydrolase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP052065.1\|WP_003571227.1\|2356941_2358684_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP052065.1\|WP_003580480.1\|2336753_2337611_-\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	1.02475e-34
NZ_CP052065.1\|WP_003584830.1\|2358680_2359694_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	7.22643e-91
NZ_CP052065.1\|WP_003580472.1\|2330442_2331861_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.79055e-65
NZ_CP052065.1\|WP_003586311.1\|2346879_2347785_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	8.31092e-89
NZ_CP052065.1\|WP_003566940.1\|2354395_2354770_+\|YxeA-family-protein	gnl\|CDD\|377665	pfam06486, DUF1093, Protein of unknown function (DUF1093). This family consists of several hypothetical bacterial proteins of unknown function.	3.24145e-19
NZ_CP052065.1\|WP_016381600.1\|2339376_2341068_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	6.00819e-92
NZ_CP052065.1\|WP_003586316.1\|2345922_2346600_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.15445e-80
NZ_CP052065.1\|WP_003580481.1\|2337748_2339380_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	7.32284e-92
NZ_CP052065.1\|WP_003580474.1\|2332151_2332718_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.1683e-11
NZ_CP052065.1\|WP_003580488.1\|2341264_2341690_-\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	3.3644e-34
NZ_CP052065.1\|WP_003586314.1\|2346596_2346902_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.69699e-23
NZ_CP052065.1\|WP_003584829.1\|2355233_2356961_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	4.4558e-158
NZ_CP052065.1\|WP_003580477.1\|2334463_2336302_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0

>NZ_CP052065.1|WP_016382231.1|2341841_2342942_-|hypothetical-protein
MKKLIVLSATLLVSMGLAACSSGSSSSSSKSSSTTSQTSNAKVKINTGADASAKVPAAGTLVMRQLYAAPHGKQSFAAVNVTLNGDTIVSAKIDEFQYVKKSSDWTGVPNSNKDFGKSYPKGQFLIAKAENSNPYSALMKKEAKATHTWEENETAITNFVKGKKIEDLKADVAKVKDTKKVSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDNTITEGQVLAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPSKDFGGVPNSNADFGKGIKSGTVLASKRANSEAYSAIMKSKGKATQTWQENSNAIDEFAKGKTIAELETAVSDLKGKKKVSDVVSGATFTDTSGYLTAIISAAKAAK
>NZ_CP052065.1|WP_003580488.1|2341264_2341690_-|NusG-domain-II-containing-protein
MRWLKKYVRPFDYVIIIVLFVACFLPVGIFSLTEANVNTNQKVAVISINGHVKRRIQLTTHTRHQQFTLYPAKGQYNIIEVQGARIRDKEDNSPDQIAVHTGWISQIGQQSICLPHKLLIEIKPAQAGTGTSGDTGGLVHP
>NZ_CP052065.1|WP_016381600.1|2339376_2341068_-|ATP-binding-cassette-domain-containing-protein
MLGLLKYGRDQRWAGVIETVFDWLPTLLPIMIALNFAAKRPGNALIITVILVLIWLGYVIGYERHHRHAWAMSAKRELRDHYFEALYQRNNAGDATAADNAVIQRDLGGLNNLDMFYSTLFPTLIQAGLTFLLLIGLSVWYGSWLAFLPLACVFLIGFAMMFLGKKMSAQNKAHLAGFLRMGGRFMNDLSGMNTLVMYNAADRYAKKFADDSEYFRQATMNLLRTQLQVLFVINGFVYLTVFAGGFVTALQLAAGQLPAAGAFATWFALAMMMVNARQLGYFFHVVKSNGPALAGILATIAKSKTTPATVKITDNRPLKQLVLQDVAIGYEADAPLVSDINATLVPGMLYGLAGENGTGKSTLTQALLGQLTPLSGTIMADNTPVTALSNAQRAAVFGYVAANDYIFSGTIKENLLLGNQFGDQWQQHLDELGLMHFVTDLQDGYATEVGEGGRLLSPGQRQQLAFARMLLADKTVYLLDEMTSSIDAANAAIILAAIKRLSRQKIVLFISHDLSAMAEADVVWFIHDHQLISADHAQLYRDQPAYRHLVDNPEAMLKEGQPS
>NZ_CP052065.1|WP_003580481.1|2337748_2339380_-|ABC-transporter-ATP-binding-protein
MIRSLLRYTHHLTGAIIISFLIGLVAELTKVVVLVLAAMMLFDPQNASHLLIPGIIAVVIVGLGSFGEQYAGHFVAFHVLAELRGAVYRKLVQLAPAKLDSQGSGKLLKLIGSDIEAMEIFYAHTIVPVAIGLIYGVLMVAVYSSLNGPAAAVVLVSYAAVGLLIPYYRHEQMTAKAQAADRQKAVNQQYLLESVRGMAVLRQLEVADARMKTGNEGFDHEATAFQQSQFGQLLKNMSATLVMLVAWLFIVWLSGWTQPQPLQQALLAVFPLTFGPLLALTNLPASLLNGFAAARNLLNLLQEVPATSAAIDATRTLNQIAIIQVDHVTFKYPSRDETVLRQVSLSLHAGEIVGFVGASGSGKSTLAKLIMGWYPLTQGRILIDGIDLTKIDPASLRAQVNYLPQTPVFFSESVRDNLTLHDATITDAQIWTVLNQVKLTSRLRQAEKGLDENVVSGQLQFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILDAIKAYYHGIVIMISHRAESAAYADRLYRFADHQVSAASTEPK
>NZ_CP052065.1|WP_003580480.1|2336753_2337611_-|PRD-domain-containing-protein
MIIQNVLNNNAVVARHQQREVIVVERGIGFRAKKDAKMALRDSMKVYVPEDQAKLKIATATIASLPSAYLDLAAGIIQEAEKRLQTTFKSYLLIELADHVHFAVQRLYEKIVLHNKLLWEIQVAYTQEYEMGEWALHQIAAQLHEQLPEDEAGFIALKFVSNDLNHQQTVNSLAFTQTLASLTKIIFYNLGLDMNVKTPDYQRLVIHLKFFLQRMYAAAPSPLSLKMENYDYVLLKHLQQDYARAYHCMEDVDRFMQQKLAIAIPKNEQIYLTMHIARLAKSLAE
>NZ_CP052065.1|WP_003580477.1|2334463_2336302_-|PTS-glucose-transporter-subunit-IIA
MNESGLAQQLLNLIGGKQNINQVWHCATRLRFTLKDRAKVPKDKIEALDGVITVVEASGQFQVVIGNNVGDVYHEVVKLEPSLSEGETSGETAAQGKMTFKSAFNSLLTFISGVFTPFLGAMAGAGILKGLLSLAVVMGWLTAKSGAYQIWWAAADGIFYFLPIALAFTAAKQLKVNQFVSMAIAAAMVSPGIVALGAKATTIDFFGIPVVPANYTATVLPILLVVVVQKFLEPVFNKLWHESVRNILAPVCLLVVIVPLTLIVVGPISATVSSWLATAIVSLNKSVPILAGLVLGGFWQVIVIFGVHWALVPVMMNNIAQNGTDLMMPILLPAVLSQAGAALAVFLRTRDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYLACVAGAVGGMIVAISGAGANAAALASVLSLPTFIGKGFGLSVVGDVVAFALGTVLTYFFGGINAGAKAKTSPSANSELGEALAAPVKGVLVPLTGLADEVFASETMGKGVAIVPENGMVKAPVAGVIRLLYPTGHAIGIQSDKGSEILIHIGIDTVNLKGKHFQPLVAQGQHVEIGTPLVQFDHEAIEKEGYESTVMMIVTNSDQYQIATLGQGATDDRPVMTLA
>NZ_CP052065.1|WP_003580476.1|2332844_2334293_-|family-1-glycosylhydrolase
MTYLNFPKNFLWGGATAANQLEGAYQEDGKGLSIADVLPQGKDRFTIVNRPDFNWTIDKSKYRYPNHQGIDHYHRFKEDIKLFSEMGFKCYRFSIAWSRIFPEGDEKTPNASGLKFYDEVIATCLKYDIEPVVTISHYEMPLHLVTKYGGWKNKRLIEFYKHFAETVLTRYFKQVKYWMTFNEINSAWAFPVMSQGLVANNGGNDKQTIFQAWHNQFVASAWAVKIGHALDPKLQVGCMLLYATTYSYDANPVNQLATLQQNQAFNFFCGDVQVRGEYPAYTDALMADNGFKFTDLDFSAEELTLLKNHPVDYIGFSYYMSAVVETVEKEHAEVGGNLLSGIKNPFLRASEWGWQIDPIGLRIALNQLYERYRKPLFIVENGLGAVDKPDADGKIKDDYRIDYLKQHIEQMGAAIHDGVDLMGYTPWGCIDLVSASSGQMSKRYGFIYVDLDDAGQGSLNRYKKQSFNWYQRVIASNGTDLG
>NZ_CP052065.1|WP_003580474.1|2332151_2332718_-|TetR/AcrR-family-transcriptional-regulator
MDTREKLVATAASLFQKEGVRATGLTQILTVSGTPKGSLYYYFPNGKAQLIEAAITYAGQHILEHVQRDLDRYKAPDAALAGQLESMATEMQEKGHLGGNSISLIALETGDDPELQAACSAVFTQLETLYIKKLTSAGIPPDRAQPLGQFIQASIEGAIILAATKDNPDLLRQTADQLTRLIKLALAA
>NZ_CP052065.1|WP_076665408.1|2331996_2332146_-|acetyltransferase
MPVVCFYHLTRSPAQQPACKDLGRNGQSTTITPKATYTPVANRAGSRSL
>NZ_CP052065.1|WP_003580472.1|2330442_2331861_-|multidrug-efflux-MFS-transporter
MQLSQTKEMPQARVHVAHPAMAMIGLMIGAFVGMFSETSLNIALPSLMTALNVSQGTIQWLVTGYMLVIGICMPLSSLLSKWYNTKKIILFALGAFILGSVVSAMGAVFPVVLIGRLIQGIGTGLILPLMFSVAMQIFPPYKLGTVMGMAALVIMFAPAIGPTITGLVLAKFTWHYIFWLFVPFLVLAFIFTLTSMENVYHQTQTPVDWLSIVESSIGFAGIVVGTTMASDAGWLSLEVGLALLVGVIGLVLYARRQLSLTNPMLNLRVFANKQFTVGTLLVMLDFGVILASMYLLPMYLQRVMGLPVAMTGLVMLPGGIVNAAVSAIAGRMYDSHGAKWLSRGGFVIAILGVLILLNSGAQSPLWWIILGHVVLMIGAPLAMSPAQTYGLNSLSGAESADGSALLNTLQQIVGAVSTAVATSMLALGSAKAAGQTGLTIGSHFGFMFVLILAIIGLIVAFQVKKPQASRDL
>NZ_CP052065.1|WP_003586316.1|2345922_2346600_-|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSEVTVIDTASPKVLTDLIEALRNDLDKVVLSNDQLEPQEIRKASLWIGDPMLELDLDKLFQRLIYKRMELLIENQRLVELIDQSQQMAMYLLQDPFLSDLPVTVEPGGKLEQIMKYCNVHFDEAVTTESISKIEALIQTLTKLEEKKLVILTNVSHYLSARDFFAVTEQIGDTELQVILIEFSKVNRKKYFEKCQYIYIDEDFVDSRELD
>NZ_CP052065.1|WP_003586314.1|2346596_2346902_-|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVLTSENRRNYRKFRKALINEGFLMMQYSIYVRVCSTKKSAEFLEHRIAAMKPPIGTVQTLMVTEAQYQAMHFLVGEAKQDIRNSADRTVII
>NZ_CP052065.1|WP_003586311.1|2346879_2347785_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSLIVTQHCKVTTKNRTLVVQTDGEVNNVPIEDINQVVFTTTRALLSADAITTLAEANAKVIFSGRDGQPVTETTNLYSDRRKADLVRLQVNWPKSLVENLWTKIVAAKVSNQAQVTKLCGYDNQSLLDDLDTLEINDHSNREATAARKYFKLIFGDDFSRSDICATNAALNYGYSILLSTTNRAIVSAGHITEIGMHHSSVANQYNLGSDLMEPFRPAIDYWVANQKFTDLTPNIKYGLIALLNLEVTFNGKKALLQNALDEHVENCLAYLDGKRNNCRIEVEFPNEVSSDAFNDHV
>NZ_CP052065.1|WP_003584827.1|2352210_2353005_-|hypothetical-protein
MEATKLAKRKQWPVPFSQTEPHFTFNNWLKFFSVVLFAYLLFYTRNPIGGFFNMSGTTFLNVANGWTRAVVVFGGVLYCAIIFAGAVWAAGWDGLSQLFASFRWRDIWYVFAYGILYLIATTLGGILGDLVPIRFGVDFVNTLEAAQFGNLGAFSLISFRAFFMTLATQLTAVMIFLASQQLFSRLATKHRRWALFLTYLLALTVTAVVTTTPLAPHVFVNIASGLIAQLPLYWVYRRSRNILVVTLSAFILMHVMIGLAVMLG
>NZ_CP052065.1|WP_003571221.1|2353005_2354172_-|hypothetical-protein
MSRQNLMILIVDLVLIIIFIGGFGWGIGTVKRYQVEPNTSRTETNTDSLYSESRFEKTLQKFKRLDLMVRLGPVKDAKTFNYTPDEFNVKYSSQPIVSGLKATKTLNAETGEVEVCTTMTPQGVTVAGDYLLTTAYDHDGFHNSVMYIQDLKTGKLLNTVVLNGRPHVGGLTYDAKNDNIWICGRRNNAAEVFAIKLKTALTYNVDKKAKAVAYSQRAQLGNISRASFVTYYENALFVGFFNPTGKGNIQRYPLNDKGQVVGKSLTSSISNQFDVLTQSVLHQDILSKIQGMAFYGDYTILSQSYGGGNSTLYIFKTDPKKTIFRASDAIDTFDMPSHLEQISTHDGRMYMMFESAAYAYRHRSTNQLDRVLSMNLEGFVQLVLKEEK
>NZ_CP052065.1|WP_003566940.1|2354395_2354770_+|YxeA-family-protein
MNMKKILIGIGIFIGLVILGGAGFYAWYTQSTPYYTQITTTGKKFDVIDDETGAARDIDYAYTQMAYDEKGHGTEVDFNGHKSRPLKMQAYLRLDYSTRRNQVISWEAVPKEKVPKAALAKLNR
>NZ_CP052065.1|WP_003566944.1|2354838_2355162_+|DUF4870-domain-containing-protein
MTNEHKVLRGLSYISVIFAPILFPILVWIFTPQGSVTRDTAKHALWLHIIPTLLSIFIFMIIGGVGFFTNSINATSAVSLILLLVAMVVDIGMVVYNIYTGIKIITS
>NZ_CP052065.1|WP_003584829.1|2355233_2356961_-|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWVRPDLKRYRGLLFWSLILGVMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGIGRPVFQYIERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGCALWIMLLLLFQVLILPWWGLVVERFRKAEQKQLNHDAYVSLTDSVLGLSDWVITHREKDFMSQSLAAPKKLAASTVKSKRFQWRRDFVGQLLFVLIVISMLIWTNLEWTGNQASANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLQPVTRQLPQQQAVPTQFKEMTLQHLSFQYTPKDPELITDIDLTVHSGEKIAILGPSGMGKTTLLQLVLGDLTPTTGNVLVDGQDVLTYQQHRTNLFAVLDQSPFLFNTSIVNNVRLGNEQASDADVAAALKAVKLDQLVAQLPNGINSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLETMFTVLQGKTILWVTHHLQGVNQTDRVIFLEDGRLTMNDTPSHLAKNDERYQNLYALDAGLR
>NZ_CP052065.1|WP_003571227.1|2356941_2358684_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLMRLSGMKRIMTMLAGFALVQAFVILLQGKFLAEGIVHSWNRQSLAGLWLPLGLFATAFVIRQLIVWVRNRIGARFAMTSSAWLQAQLLKHLYALGPAAVAKEGTGNLVTMALDGIPEAENYIELILNKILNMSIIPWVLVAYIWYENWLTGFTLLIMFPIIILFMVILGLAAQDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISRQYANNVYDVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGAIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMKAIWQVIDQPLPTDTNVLPAFSRWQAQDTVTINHLDFTYPNERAGIQDANLQFTGTEKVAIIGASGSGKSTLLNLIGGFLQPQKAAMTVRGTKVPHMTQAAWQDHLSYIPQDPYLFADTIAANIRFYRPDASDEDVKQAAEAAGLSHWIETLADGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAELKETLVPLFKNRLVIFATHRLHWLNQMDRVIVVDGGKIIAEGTPSELAAHSKPYQALVHEMRGEFNALVEK
>NZ_CP052065.1|WP_003584830.1|2358680_2359694_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSWLQILWFFLLFVLFSGFFVLEGFDFGVGMSTKLLARNSDEEDQLVATIGPHWDGNEVWLITAGGAMFASYPMWYASLFSGFYIMFFLVLFGLIVRGVSFEFAAHAETKRGRNIWRWALACGSLIPPFILGMIFTAIIQPLPITKAGDVYPTLGNQINLLTIVGGVAVTLMMLMHGLNFIRLKTTGDLRKRARDWNSKLYYLLYAGEIVFAVLLFFMTDFFKERPISTLLILVVIVGSTVAAHVGVLKDNEVLSFVGSALGLVGVVGVIFNGLFPRVMIGQDAAMSILVKDASASPLTLTIMTIVAVILLPIALAYFIWSYVVFHKRIQAKGAVSE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP052065_3	3.39\|2345767\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345767-2345796	30	MN830258	Lactobacillus phage JNU_P9, complete genome	39045-39074	0	1.0
NZ_CP052065_3	3.39\|2345767\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345767-2345796	30	NC_005893	Lactobacillus phage phiAT3, complete genome	34157-34186	1	0.967
NZ_CP052065_3	3.39\|2345767\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345767-2345796	30	AY605066	Bacteriophage phi AT3, complete sequence	34157-34186	1	0.967
NZ_CP052065_3	3.37\|2345635\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345635-2345664	30	KC171647	Lactobacillus phage PL-1, complete genome	3062-3091	2	0.933
NZ_CP052065_3	3.37\|2345635\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345635-2345664	30	NC_022756	Lactobacillus phage J-1, complete genome	3062-3091	2	0.933
NZ_CP052065_3	3.37\|2345635\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345635-2345664	30	MF999224	Lactobacillus phage LJ, complete genome	19462-19491	2	0.933
NZ_CP052065_3	3.37\|2345635\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345635-2345664	30	MH983004	Lactobacillus phage BH1, complete genome	3062-3091	2	0.933
NZ_CP052065_3	3.40\|2345833\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345833-2345862	30	NC_007501	Lactobacillus phage Lc-Nu, complete genome	30801-30830	2	0.933
NZ_CP052065_3	3.40\|2345833\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345833-2345862	30	AY131267	Bacteriophage Lc-Nu, complete genome	30801-30830	2	0.933
NZ_CP052065_3	3.37\|2345635\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345635-2345664	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	3074-3103	3	0.9
NZ_CP052065_3	3.37\|2345635\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345635-2345664	30	NC_004112	Lactobacillus phage A2, complete genome	3074-3103	3	0.9
NZ_CP052065_3	3.11\|2343919\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343919-2343948	30	MK448743	Streptococcus phage Javan371, complete genome	13502-13531	5	0.833
NZ_CP052065_3	3.13\|2344051\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344051-2344080	30	NZ_CP031268	Staphylococcus warneri strain 16A plasmid unnamed2	6674-6703	5	0.833
NZ_CP052065_3	3.19\|2344447\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344447-2344476	30	MT774393	CrAssphage cr127_1, complete genome	42841-42870	5	0.833
NZ_CP052065_3	3.19\|2344447\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344447-2344476	30	NZ_CP039224	Piscirickettsia salmonis strain NVI 5692 plasmid unnamed5, complete sequence	31378-31407	6	0.8
NZ_CP052065_3	3.30\|2345173\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345173-2345202	30	NZ_CP040339	Bacillus luti strain FJ plasmid unnamed3, complete sequence	24291-24320	6	0.8
NZ_CP052065_3	3.1\|2343259\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343259-2343288	30	NZ_AP018520	Sphingobium sp. YG1 plasmid pYGP1, complete sequence	189876-189905	7	0.767
NZ_CP052065_3	3.16\|2344249\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344249-2344278	30	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	104218-104247	7	0.767
NZ_CP052065_3	3.16\|2344249\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344249-2344278	30	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	105358-105387	7	0.767
NZ_CP052065_3	3.19\|2344447\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344447-2344476	30	JN638751	Bacillus phage G, complete genome	253284-253313	7	0.767
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	950310-950339	7	0.767
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	MT601272	Bacillus phage vB_BsuS-Goe11, complete genome	21559-21588	7	0.767
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	MT366947	Bacillus phage Hyb2phi3Ts-SPbeta, complete genome	20807-20836	7	0.767
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KY030782	Bacillus phage phi3T, complete genome	20807-20836	7	0.767
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	MT366948	Bacillus phage Hyb3phi3Ts-SPbeta, complete genome	20807-20836	7	0.767
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	MT366945	Bacillus phage phi3Ts, complete genome	20807-20836	7	0.767
NZ_CP052065_3	3.23\|2344711\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344711-2344740	30	NZ_CP034186	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence	376623-376652	7	0.767
NZ_CP052065_3	3.23\|2344711\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344711-2344740	30	NC_019313	Sinorhizobium meliloti plasmid pHRC017, complete sequence	183578-183607	7	0.767
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP016462	Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence	79182-79211	7	0.767
NZ_CP052065_3	3.26\|2344909\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344909-2344938	30	NZ_CP010135	Escherichia coli strain D1 plasmid A, complete genome	19143-19172	7	0.767
NZ_CP052065_3	3.26\|2344909\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344909-2344938	30	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	214547-214576	7	0.767
NZ_CP052065_3	3.32\|2345305\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345305-2345334	30	MN176219	Bacillus phage 000TH010, complete genome	28194-28223	7	0.767
NZ_CP052065_3	3.38\|2345701\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345701-2345730	30	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	40501-40530	7	0.767
NZ_CP052065_3	3.6\|2343589\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343589-2343618	30	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	148041-148070	8	0.733
NZ_CP052065_3	3.6\|2343589\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343589-2343618	30	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	533174-533203	8	0.733
NZ_CP052065_3	3.6\|2343589\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343589-2343618	30	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	399866-399895	8	0.733
NZ_CP052065_3	3.6\|2343589\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343589-2343618	30	CP047390	Agrobacterium sp. CGMCC 11546 plasmid pB	172783-172812	8	0.733
NZ_CP052065_3	3.6\|2343589\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343589-2343618	30	NZ_CP033036	Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence	283508-283537	8	0.733
NZ_CP052065_3	3.6\|2343589\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343589-2343618	30	NC_003064	Agrobacterium fabrum str. C58 plasmid At, complete sequence	450407-450436	8	0.733
NZ_CP052065_3	3.6\|2343589\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343589-2343618	30	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	311399-311428	8	0.733
NZ_CP052065_3	3.6\|2343589\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343589-2343618	30	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	311483-311512	8	0.733
NZ_CP052065_3	3.12\|2343985\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343985-2344014	30	KP671755	Vibrio phage ValKK3, complete genome	16016-16045	8	0.733
NZ_CP052065_3	3.12\|2343985\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343985-2344014	30	MH321493	Salmonella phage Skate, complete genome	25420-25449	8	0.733
NZ_CP052065_3	3.12\|2343985\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343985-2344014	30	KY860935	Salmonella phage LPST10, complete genome	16180-16209	8	0.733
NZ_CP052065_3	3.12\|2343985\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343985-2344014	30	MN871490	UNVERIFIED: Salmonella phage SEzh_1, complete genome	25308-25337	8	0.733
NZ_CP052065_3	3.12\|2343985\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343985-2344014	30	KT919972	Vibrio phage phi-Grn1, complete genome	226148-226177	8	0.733
NZ_CP052065_3	3.12\|2343985\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343985-2344014	30	MN692673	Salmonella phage VB_StyS_BS5, complete genome	15797-15826	8	0.733
NZ_CP052065_3	3.12\|2343985\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343985-2344014	30	MH791402	UNVERIFIED: Salmonella phage Segz_1, complete genome	19684-19713	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	950150-950179	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	950190-950219	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	950270-950299	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	950390-950419	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019135	Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome	54737-54766	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019114	Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome	54643-54672	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019138	Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome	54649-54678	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019122	Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome	54638-54667	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019055	Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome	54736-54765	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019038	Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome	54423-54452	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019068	Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome	54642-54671	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019137	Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome	54733-54762	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019157	Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome	54737-54766	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019087	Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome	54638-54667	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019076	Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome	54642-54671	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019065	Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome	54636-54665	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019026	Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome	54644-54673	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019081	Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome	54643-54672	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019033	Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome	54489-54518	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	NC_023584	Synechococcus phage S-MbCM100, complete genome	55431-55460	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019153	Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome	54638-54667	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019158	Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome	54642-54671	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019067	Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome	54643-54672	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019039	Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome	54637-54666	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019030	Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome	54641-54670	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019163	Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome	54633-54662	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019116	Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome	54452-54481	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019088	Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome	54724-54753	8	0.733
NZ_CP052065_3	3.20\|2344513\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344513-2344542	30	KJ019084	Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome	54637-54666	8	0.733
NZ_CP052065_3	3.28\|2345041\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345041-2345070	30	NZ_CP028945	Vibrio sp. dhg plasmid unnamed1, complete sequence	23136-23165	8	0.733
NZ_CP052065_3	3.4\|2343457\|30\|NZ_CP052065\|CRISPRCasFinder,CRT	2343457-2343486	30	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	407276-407305	9	0.7
NZ_CP052065_3	3.14\|2344117\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344117-2344146	30	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1556860-1556889	9	0.7
NZ_CP052065_3	3.19\|2344447\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344447-2344476	30	NZ_CP031220	Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence	125268-125297	9	0.7
NZ_CP052065_3	3.19\|2344447\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344447-2344476	30	NC_049481	Lactococcus phage CHPC361, complete genome	21399-21428	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP026804	Shigella flexneri strain 89-141 plasmid unnamed1	55080-55109	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP026794	Shigella flexneri strain 74-1170 plasmid unnamed	15528-15557	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP026794	Shigella flexneri strain 74-1170 plasmid unnamed	244734-244763	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP033511	Shigella flexneri strain 2016AM-0877 plasmid p2016AM-0877, complete sequence	186579-186608	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP026789	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed1, complete sequence	87826-87855	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP034059	Shigella flexneri strain FDAARGOS_535 plasmid unnamed1, complete sequence	181875-181904	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP024476	Shigella flexneri 7b strain 94-3007 plasmid unnamed3, complete sequence	212087-212116	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_LR213456	Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 plasmid 2	87047-87076	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP026771	Shigella flexneri Y strain 93-3063 plasmid unnamed3, complete sequence	60107-60136	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP044157	Shigella flexneri strain AR-0424 plasmid pAR-0424-2, complete sequence	215777-215806	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP026837	Shigella boydii strain ATCC 49812 plasmid unnamed, complete sequence	139761-139790	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NC_017319	Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence	73057-73086	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP012142	Shigella flexneri 4c strain 1205 plasmid 1205p2, complete sequence	73059-73088	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP044154	Shigella flexneri strain AR-0425 plasmid pAR-0425-2, complete sequence	10672-10701	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP034933	Shigella flexneri strain 2013C-3749 plasmid p2013C-3749-2, complete sequence	51375-51404	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP037924	Shigella flexneri 5a str. M90T plasmid pWR100, complete sequence	18843-18872	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP026800	Shigella flexneri strain NCTC 9728 plasmid unnamed, complete sequence	16783-16812	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NC_002698	Shigella flexneri 5a virulence plasmid pWR501, complete sequence	70426-70455	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP030773	Shigella flexneri 1c strain Y394 plasmid pINV-Y394, complete sequence	51763-51792	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP020087	Shigella flexneri 1a strain 0670 plasmid unnamed1, complete sequence	171006-171035	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP020337	Shigella flexneri 4c strain 1602 plasmid unnamed1, complete sequence	37214-37243	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NC_019197	Shigella flexneri plasmid pSF5, complete sequence	99920-99949	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP045942	Shigella flexneri 2a strain AUSMDU00010535 plasmid pAUSMDU00010535_01, complete sequence	91633-91662	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NC_004851	Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence	74402-74431	9	0.7
NZ_CP052065_3	3.25\|2344843\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344843-2344872	30	NZ_CP026830	Shigella dysenteriae strain ATCC 12039 plasmid unnamed, complete sequence	28338-28367	9	0.7
NZ_CP052065_3	3.26\|2344909\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344909-2344938	30	MN961670	Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence	308409-308438	9	0.7
NZ_CP052065_3	3.35\|2345503\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345503-2345532	30	NZ_CP053977	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed1, complete sequence	19569-19598	9	0.7
NZ_CP052065_3	3.35\|2345503\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345503-2345532	30	NZ_CP034684	Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence	37751-37780	9	0.7
NZ_CP052065_3	3.35\|2345503\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2345503-2345532	30	NZ_CP009332	Bacillus thuringiensis strain HD1011 plasmid 3, complete sequence	10854-10883	9	0.7
NZ_CP052065_3	3.19\|2344447\|30\|NZ_CP052065\|CRISPRCasFinder,CRT,PILER-CR	2344447-2344476	30	MF448569	Lactococcus phage 88605, complete genome	22649-22678	10	0.667

1. spacer 3.39|2345767|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 0, identity: 1.0

cgcgaaagacattgattccaatatgagcaa	CRISPR spacer
cgcgaaagacattgattccaatatgagcaa	Protospacer
******************************

2. spacer 3.39|2345767|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 1, identity: 0.967

cgcgaaagacattgattccaatatgagcaa	CRISPR spacer
agcgaaagacattgattccaatatgagcaa	Protospacer
 *****************************

3. spacer 3.39|2345767|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 1, identity: 0.967

cgcgaaagacattgattccaatatgagcaa	CRISPR spacer
agcgaaagacattgattccaatatgagcaa	Protospacer
 *****************************

4. spacer 3.37|2345635|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 2, identity: 0.933

aaccgctcttgaagaacttctgtaaggttg	CRISPR spacer
agccgctcttgaagaacttctgtaacgttg	Protospacer
*.*********************** ****

5. spacer 3.37|2345635|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 2, identity: 0.933

aaccgctcttgaagaacttctgtaaggttg	CRISPR spacer
agccgctcttgaagaacttctgtaacgttg	Protospacer
*.*********************** ****

6. spacer 3.37|2345635|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 2, identity: 0.933

aaccgctcttgaagaacttctgtaaggttg	CRISPR spacer
agccgctcttgaagaacttctgtaacgttg	Protospacer
*.*********************** ****

7. spacer 3.37|2345635|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 2, identity: 0.933

aaccgctcttgaagaacttctgtaaggttg	CRISPR spacer
aaccactcttgaagaacttctgtaacgttg	Protospacer
****.******************** ****

8. spacer 3.40|2345833|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_007501 (Lactobacillus phage Lc-Nu, complete genome) position: , mismatch: 2, identity: 0.933

cgctgctaatttccgaatggcttcgttgta	CRISPR spacer
cactgctaatttctgaatggcttcgttgta	Protospacer
*.***********.****************

9. spacer 3.40|2345833|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to AY131267 (Bacteriophage Lc-Nu, complete genome) position: , mismatch: 2, identity: 0.933

cgctgctaatttccgaatggcttcgttgta	CRISPR spacer
cactgctaatttctgaatggcttcgttgta	Protospacer
*.***********.****************

10. spacer 3.37|2345635|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 3, identity: 0.9

aaccgctcttgaagaacttctgtaaggttg	CRISPR spacer
agccgctcttgaagaacttctgcaacgttg	Protospacer
*.********************.** ****

11. spacer 3.37|2345635|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 3, identity: 0.9

aaccgctcttgaagaacttctgtaaggttg	CRISPR spacer
agccgctcttgaagaacttctgcaacgttg	Protospacer
*.********************.** ****

12. spacer 3.11|2343919|30|NZ_CP052065|CRISPRCasFinder,CRT matches to MK448743 (Streptococcus phage Javan371, complete genome) position: , mismatch: 5, identity: 0.833

ctcgtaaatcgccgataacatcagtgagat---	CRISPR spacer
cacgaaaatcgccgataacatcag---gatcta	Protospacer
* ** *******************   ***

13. spacer 3.13|2344051|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031268 (Staphylococcus warneri strain 16A plasmid unnamed2) position: , mismatch: 5, identity: 0.833

taatc--ttgattatgatgcgagttatattga	CRISPR spacer
--atcgtttgattacgatgcaagttatattta	Protospacer
  ***  *******.*****.********* *

14. spacer 3.19|2344447|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 5, identity: 0.833

acttgttagttaattcatcattagatgaag	CRISPR spacer
aatttttagttaattcatcatcagatgcat	Protospacer
* ** ****************.***** *

15. spacer 3.19|2344447|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039224 (Piscirickettsia salmonis strain NVI 5692 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8

acttgttagttaattcatcattagatgaag	CRISPR spacer
attagctagttaattcatcatttgataaat	Protospacer
*.* *.**************** ***.**

16. spacer 3.30|2345173|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040339 (Bacillus luti strain FJ plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

cctcctttaactttcgaagaggctatttga	CRISPR spacer
aatcctttaactttcgaagatgctgactga	Protospacer
  ****************** ***. .***

17. spacer 3.1|2343259|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NZ_AP018520 (Sphingobium sp. YG1 plasmid pYGP1, complete sequence) position: , mismatch: 7, identity: 0.767

catcaattgcgggaagaactcgaatttcct	CRISPR spacer
catttcttgcgggacgaactcgaattttga	Protospacer
***.  ******** ************.

18. spacer 3.16|2344249|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 7, identity: 0.767

gccggcgttagcttttgtgagggtacgatg	CRISPR spacer
cgtgtcggtagcttttgtgagggtaccaag	Protospacer
  .* ** ****************** * *

19. spacer 3.16|2344249|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 7, identity: 0.767

gccggcgttagcttttgtgagggtacgatg	CRISPR spacer
cgtgtcggtagcttttgtgagggtaccaag	Protospacer
  .* ** ****************** * *

20. spacer 3.19|2344447|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 7, identity: 0.767

acttgttagttaattcatcattagatgaag	CRISPR spacer
aagtgttagttaattcatcagtagaatact	Protospacer
*  ***************** ****  *

21. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.767

accaagatacaactaacaatcagaactcaa	CRISPR spacer
atagctatacaattaacaatcagcactcaa	Protospacer
*. .  ******.********** ******

22. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MT601272 (Bacillus phage vB_BsuS-Goe11, complete genome) position: , mismatch: 7, identity: 0.767

accaagatacaactaacaatcagaactcaa	CRISPR spacer
aagggaatacatcaaacaatcagaactcaa	Protospacer
*  ...***** * ****************

23. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MT366947 (Bacillus phage Hyb2phi3Ts-SPbeta, complete genome) position: , mismatch: 7, identity: 0.767

accaagatacaactaacaatcagaactcaa	CRISPR spacer
aaggaaatacatcaaacaatcagaactcat	Protospacer
*  .*.***** * ***************

24. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KY030782 (Bacillus phage phi3T, complete genome) position: , mismatch: 7, identity: 0.767

accaagatacaactaacaatcagaactcaa	CRISPR spacer
aaggaaatacatcaaacaatcagaactcat	Protospacer
*  .*.***** * ***************

25. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MT366948 (Bacillus phage Hyb3phi3Ts-SPbeta, complete genome) position: , mismatch: 7, identity: 0.767

accaagatacaactaacaatcagaactcaa	CRISPR spacer
aaggaaatacatcaaacaatcagaactcat	Protospacer
*  .*.***** * ***************

26. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MT366945 (Bacillus phage phi3Ts, complete genome) position: , mismatch: 7, identity: 0.767

accaagatacaactaacaatcagaactcaa	CRISPR spacer
aaggaaatacatcaaacaatcagaactcat	Protospacer
*  .*.***** * ***************

27. spacer 3.23|2344711|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

tacggtaatgcggaaaattcgcggcgacgt	CRISPR spacer
agccgagatgcggaaaattcgcggcaacga	Protospacer
 .* * .******************.***

28. spacer 3.23|2344711|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_019313 (Sinorhizobium meliloti plasmid pHRC017, complete sequence) position: , mismatch: 7, identity: 0.767

tacggtaatgcggaaaattcgcggcgacgt	CRISPR spacer
aagggagatgcggaagattcgcggcgacaa	Protospacer
 * ** .********.************.

29. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 7, identity: 0.767

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
aatgatcagccatgcatcgctgccaccaac	Protospacer
..  .***** *** ***************

30. spacer 3.26|2344909|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010135 (Escherichia coli strain D1 plasmid A, complete genome) position: , mismatch: 7, identity: 0.767

tgatcaaaccatcgatgcaatgttcaggcg	CRISPR spacer
tgatcaaaccgtcgatgaaatgttcgacac	Protospacer
**********.****** *******..

31. spacer 3.26|2344909|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.767

tgatcaaaccatcgatgcaatgttcaggcg	CRISPR spacer
tgatcaaaccgtcgatgaaatgttcgacac	Protospacer
**********.****** *******..

32. spacer 3.32|2345305|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MN176219 (Bacillus phage 000TH010, complete genome) position: , mismatch: 7, identity: 0.767

ccatacggcagtttcatcgtcttaaattcg	CRISPR spacer
aaaaacggctgtttcatcgtctttaatgag	Protospacer
  * ***** ************* ***  *

33. spacer 3.38|2345701|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ttattggtactagggtttatgttgctactg	CRISPR spacer
gtggtggtactagcgttgatgttgctaggg	Protospacer
 *. ********* *** *********  *

34. spacer 3.6|2343589|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ccttgcgcacggtataaccgttgacgtaag	CRISPR spacer
tgttgggcacggtataaccgttgccgaggc	Protospacer
. *** ***************** ** ..

35. spacer 3.6|2343589|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 8, identity: 0.733

ccttgcgcacggtataaccgttgacgtaag	CRISPR spacer
ccttgcgcacgatatagccgttgggattga	Protospacer
***********.****.******. .* ..

36. spacer 3.6|2343589|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 8, identity: 0.733

ccttgcgcacggtataaccgttgacgtaag	CRISPR spacer
ccttgcgcacgatatagccgttgggattga	Protospacer
***********.****.******. .* ..

37. spacer 3.6|2343589|30|NZ_CP052065|CRISPRCasFinder,CRT matches to CP047390 (Agrobacterium sp. CGMCC 11546 plasmid pB) position: , mismatch: 8, identity: 0.733

ccttgcgcacggtataaccgttgacgtaag	CRISPR spacer
ccttgcgcacgatatagccgttgggattga	Protospacer
***********.****.******. .* ..

38. spacer 3.6|2343589|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NZ_CP033036 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence) position: , mismatch: 8, identity: 0.733

ccttgcgcacggtataaccgttgacgtaag	CRISPR spacer
ccttgcgcacgatatagccgttgggattga	Protospacer
***********.****.******. .* ..

39. spacer 3.6|2343589|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NC_003064 (Agrobacterium fabrum str. C58 plasmid At, complete sequence) position: , mismatch: 8, identity: 0.733

ccttgcgcacggtataaccgttgacgtaag	CRISPR spacer
ccttgcgcacgatatagccgttgggattga	Protospacer
***********.****.******. .* ..

40. spacer 3.6|2343589|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 8, identity: 0.733

ccttgcgcacggtataaccgttgacgtaag	CRISPR spacer
ccttgcgcacgatatagccgttgggattga	Protospacer
***********.****.******. .* ..

41. spacer 3.6|2343589|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 8, identity: 0.733

ccttgcgcacggtataaccgttgacgtaag	CRISPR spacer
ccttgcgcacgatatagccgttgggattga	Protospacer
***********.****.******. .* ..

42. spacer 3.12|2343985|30|NZ_CP052065|CRISPRCasFinder,CRT matches to KP671755 (Vibrio phage ValKK3, complete genome) position: , mismatch: 8, identity: 0.733

gctgactaacatcaaagatttgctcacctt	CRISPR spacer
actgactaaaatcaaagattttcttttccc	Protospacer
.******** *********** **. .*..

43. spacer 3.12|2343985|30|NZ_CP052065|CRISPRCasFinder,CRT matches to MH321493 (Salmonella phage Skate, complete genome) position: , mismatch: 8, identity: 0.733

gctgactaacatcaaagatttgctcacctt	CRISPR spacer
cctgacttacatcaaagattcgctgcatta	Protospacer
 ****** ************.***   .*

44. spacer 3.12|2343985|30|NZ_CP052065|CRISPRCasFinder,CRT matches to KY860935 (Salmonella phage LPST10, complete genome) position: , mismatch: 8, identity: 0.733

gctgactaacatcaaagatttgctcacctt	CRISPR spacer
cctgacttacatcaaagattcgctgcatta	Protospacer
 ****** ************.***   .*

45. spacer 3.12|2343985|30|NZ_CP052065|CRISPRCasFinder,CRT matches to MN871490 (UNVERIFIED: Salmonella phage SEzh_1, complete genome) position: , mismatch: 8, identity: 0.733

gctgactaacatcaaagatttgctcacctt	CRISPR spacer
cctgacttacatcaaagattcgctgcatta	Protospacer
 ****** ************.***   .*

46. spacer 3.12|2343985|30|NZ_CP052065|CRISPRCasFinder,CRT matches to KT919972 (Vibrio phage phi-Grn1, complete genome) position: , mismatch: 8, identity: 0.733

gctgactaacatcaaagatttgctcacctt	CRISPR spacer
actgactaaaatcaaagattttcttttccc	Protospacer
.******** *********** **. .*..

47. spacer 3.12|2343985|30|NZ_CP052065|CRISPRCasFinder,CRT matches to MN692673 (Salmonella phage VB_StyS_BS5, complete genome) position: , mismatch: 8, identity: 0.733

gctgactaacatcaaagatttgctcacctt	CRISPR spacer
cctgacttacatcaaagattcgctgcatta	Protospacer
 ****** ************.***   .*

48. spacer 3.12|2343985|30|NZ_CP052065|CRISPRCasFinder,CRT matches to MH791402 (UNVERIFIED: Salmonella phage Segz_1, complete genome) position: , mismatch: 8, identity: 0.733

gctgactaacatcaaagatttgctcacctt	CRISPR spacer
cctgacttacatcaaagattcgctgcatta	Protospacer
 ****** ************.***   .*

49. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gtagctatacaattaacaatcagcactcaa	Protospacer
.. .  ******.********** ******

50. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gtagctatacaattaacaatcagcactcaa	Protospacer
.. .  ******.********** ******

51. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gtagctatacaattaacaatcagcactcaa	Protospacer
.. .  ******.********** ******

52. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gtagctatacaattaacaatcagcactcaa	Protospacer
.. .  ******.********** ******

53. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019135 (Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

54. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019114 (Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

55. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019138 (Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

56. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019122 (Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

57. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019055 (Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

58. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019038 (Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

59. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019068 (Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

60. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019137 (Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

61. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019157 (Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

62. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019087 (Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

63. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019076 (Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

64. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019065 (Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

65. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019026 (Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

66. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019081 (Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

67. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019033 (Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

68. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_023584 (Synechococcus phage S-MbCM100, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

69. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019153 (Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

70. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019158 (Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

71. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019067 (Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

72. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019039 (Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

73. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019030 (Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

74. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019163 (Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

75. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019116 (Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

76. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019088 (Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

77. spacer 3.20|2344513|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to KJ019084 (Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome) position: , mismatch: 8, identity: 0.733

accaagatacaactaacaatcagaactcaa	CRISPR spacer
gaccttatacaactaatattcagaactcat	Protospacer
. *   **********.* **********

78. spacer 3.28|2345041|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028945 (Vibrio sp. dhg plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cagtcgtaatcttgccaatccccaattttt	CRISPR spacer
tcatcgtaatcttgccaatcctcatttcga	Protospacer
. .******************.** **.

79. spacer 3.4|2343457|30|NZ_CP052065|CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 9, identity: 0.7

ccggattcaatcgcctgaacgtaagccttt	CRISPR spacer
ggaaattcaaccgcctgaacgcaagcccaa	Protospacer
  ..******.**********.*****.

80. spacer 3.14|2344117|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 9, identity: 0.7

aaacgctattgccacacaagaccttgaaga	CRISPR spacer
ccgccgtattgccagacaagaccttgagct	Protospacer
  .*  ******** ************.

81. spacer 3.19|2344447|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 9, identity: 0.7

acttgttagttaattcatcattagatgaag	CRISPR spacer
cttcattagttaattcattattagatagtt	Protospacer
 .*..*************.*******..

82. spacer 3.19|2344447|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_049481 (Lactococcus phage CHPC361, complete genome) position: , mismatch: 9, identity: 0.7

acttgttagttaattcatcattagatgaag	CRISPR spacer
taaaagaagatgattcatcattagatgaag	Protospacer
    .  ** *.******************

83. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026804 (Shigella flexneri strain 89-141 plasmid unnamed1) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

84. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026794 (Shigella flexneri strain 74-1170 plasmid unnamed) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

85. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026794 (Shigella flexneri strain 74-1170 plasmid unnamed) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

86. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033511 (Shigella flexneri strain 2016AM-0877 plasmid p2016AM-0877, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

87. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026789 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

88. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034059 (Shigella flexneri strain FDAARGOS_535 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

89. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024476 (Shigella flexneri 7b strain 94-3007 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

90. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR213456 (Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 plasmid 2) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

91. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026771 (Shigella flexneri Y strain 93-3063 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

92. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044157 (Shigella flexneri strain AR-0424 plasmid pAR-0424-2, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

93. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026837 (Shigella boydii strain ATCC 49812 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

94. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_017319 (Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

95. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012142 (Shigella flexneri 4c strain 1205 plasmid 1205p2, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

96. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044154 (Shigella flexneri strain AR-0425 plasmid pAR-0425-2, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

97. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034933 (Shigella flexneri strain 2013C-3749 plasmid p2013C-3749-2, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

98. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037924 (Shigella flexneri 5a str. M90T plasmid pWR100, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

99. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026800 (Shigella flexneri strain NCTC 9728 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

100. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_002698 (Shigella flexneri 5a virulence plasmid pWR501, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

101. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030773 (Shigella flexneri 1c strain Y394 plasmid pINV-Y394, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

102. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020087 (Shigella flexneri 1a strain 0670 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

103. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020337 (Shigella flexneri 4c strain 1602 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

104. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_019197 (Shigella flexneri plasmid pSF5, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

105. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045942 (Shigella flexneri 2a strain AUSMDU00010535 plasmid pAUSMDU00010535_01, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

106. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NC_004851 (Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

107. spacer 3.25|2344843|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026830 (Shigella dysenteriae strain ATCC 12039 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ggacgtcagcaatgaatcgctgccaccaac	CRISPR spacer
atctgtcagtaatgaatcgctgctacccga	Protospacer
.  .*****.*************.*** .

108. spacer 3.26|2344909|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 9, identity: 0.7

tgatcaaaccatcgatgcaatgttcaggcg	CRISPR spacer
ttgagaaaccatcgaagcaatgttcaccat	Protospacer
* .  ********** **********

109. spacer 3.35|2345503|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053977 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gtctggtacaaatattggcttatccttcgg	CRISPR spacer
tggtactacaaatattgacttatccttact	Protospacer
   *. ***********.*********

110. spacer 3.35|2345503|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 9, identity: 0.7

gtctggtacaaatattggcttatccttcgg	CRISPR spacer
tggtactacaaatattgacttatccttact	Protospacer
   *. ***********.*********

111. spacer 3.35|2345503|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009332 (Bacillus thuringiensis strain HD1011 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.7

gtctggtacaaatattggcttatccttcgg	CRISPR spacer
tggtactacaaatattgacttatccttact	Protospacer
   *. ***********.*********

112. spacer 3.19|2344447|30|NZ_CP052065|CRISPRCasFinder,CRT,PILER-CR matches to MF448569 (Lactococcus phage 88605, complete genome) position: , mismatch: 10, identity: 0.667

acttgttagttaattcatcattagatgaag	CRISPR spacer
caacagaagataattcatcattagatgaga	Protospacer
   ..  ** ******************..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

547772 : 652521

114

Lactobacillus_phage(47.73%)

transposase,holin,integrase

attL 540457:540469|attR 645909:645969

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
540457:540469	attL	NA	NA	NA	NA
WP_003577897.1\|547772_548942_-\|integrase	site-specific integrase	Q6J1W6	Lactobacillus_phage	4.3e-218	97.9
540457:540469	attL	NA	NA	NA	NA
WP_003573997.1\|549054_549315_-	hypothetical protein	B4XYT0	Lactobacillus_phage	2.5e-09	40.7
WP_003573997.1\|549054_549315_-	hypothetical protein	B4XYT0	Lactobacillus_phage	2.5e-09	40.7
549253:549265	attR	NA	NA	NA	NA
WP_016368286.1\|549404_550025_+	hypothetical protein	NA	NA	NA	NA
549253:549265	attR	NA	NA	NA	NA
WP_003572177.1\|550008_550245_-	hypothetical protein	NA	NA	NA	NA
WP_016380288.1\|550437_551145_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_003574021.1\|551341_552262_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.3e-22	35.0
WP_003572182.1\|552358_552781_-	ImmA/IrrE family metallo-endopeptidase	A0A0P0IJN5	Lactobacillus_phage	7.8e-21	39.1
WP_003572184.1\|552773_553127_-	helix-turn-helix transcriptional regulator	A0A141E1M3	Streptococcus_phage	7.7e-14	40.9
WP_003574003.1\|553370_553619_+	hypothetical protein	A0A0P0ID24	Lactobacillus_phage	2.7e-37	97.5
WP_003572187.1\|553660_553861_+	hypothetical protein	NA	NA	NA	NA
WP_003574021.1\|554573_555494_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.3e-22	35.0
WP_016368112.1\|555780_556539_+	ORF6N domain-containing protein	A0A1B0YEA7	Lactobacillus_phage	7.1e-41	48.9
WP_003572196.1\|556711_556963_-	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_003572199.1\|557028_557385_+	DUF771 domain-containing protein	U5U4L9	Lactobacillus_phage	2.0e-62	98.3
WP_003572201.1\|557469_557673_+	hypothetical protein	NA	NA	NA	NA
WP_003586921.1\|557655_558201_-	hypothetical protein	NA	NA	NA	NA
WP_003661649.1\|558381_558696_+	hypothetical protein	NA	NA	NA	NA
WP_003589923.1\|558688_559435_+	DnaD domain protein	A0A0N7IRA7	Lactobacillus_phage	5.8e-35	56.1
WP_003589925.1\|559449_560274_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	6.6e-117	75.1
WP_003574016.1\|560273_560792_+	exonuclease domain-containing protein	NA	NA	NA	NA
WP_003597560.1\|560838_561261_+	hypothetical protein	NA	NA	NA	NA
WP_016368116.1\|561262_562000_+	hypothetical protein	A0A097BY87	Enterococcus_phage	3.8e-47	43.6
WP_010493149.1\|562011_562299_+	hypothetical protein	Q8LTA8	Lactobacillus_phage	1.6e-38	76.8
WP_003574021.1\|562494_563415_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.3e-22	35.0
WP_032786488.1\|563423_563756_+	hypothetical protein	NA	NA	NA	NA
WP_010493154.1\|564270_564714_+	autolysin regulatory protein arpU	A0A0P0IZI6	Lactobacillus_phage	1.2e-77	97.3
WP_003574021.1\|565621_566542_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.3e-22	35.0
WP_003583407.1\|567186_568185_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-54	39.5
WP_003573729.1\|568380_568599_-	CsbD family protein	NA	NA	NA	NA
WP_010493173.1\|570131_570467_+	ribonucleoside-diphosphate reductase	A0A0N7IRA2	Lactobacillus_phage	6.8e-52	90.6
WP_076626284.1\|570586_570919_+\|transposase	transposase	NA	NA	NA	NA
WP_003582147.1\|570948_571677_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	7.6e-32	40.1
WP_107791771.1\|571610_572552_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	4.0e-17	28.2
WP_016383324.1\|572597_573461_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	4.1e-24	30.5
WP_003582220.1\|574142_574421_+	hypothetical protein	NA	NA	NA	NA
WP_003572355.1\|574432_574699_+	hypothetical protein	NA	NA	NA	NA
WP_003572358.1\|574717_574894_+	hypothetical protein	NA	NA	NA	NA
WP_003572360.1\|574895_575123_+	hypothetical protein	NA	NA	NA	NA
WP_016382059.1\|575165_576407_+	hypothetical protein	NA	NA	NA	NA
WP_016382058.1\|576384_577944_+	DUF5011 domain-containing protein	NA	NA	NA	NA
WP_012491056.1\|577953_578373_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_016382057.1\|578381_578960_+	hypothetical protein	NA	NA	NA	NA
WP_016382056.1\|578986_581443_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_016382055.1\|581439_583437_+	hypothetical protein	NA	NA	NA	NA
WP_016382054.1\|583442_583778_+	hypothetical protein	NA	NA	NA	NA
WP_016381677.1\|583761_584358_+	hypothetical protein	NA	NA	NA	NA
WP_003589979.1\|584338_586267_+	type IV secretory pathway, VirB4 protein	NA	NA	NA	NA
WP_016382053.1\|586268_587279_+	C40 family peptidase	A0A1X9SGZ2	Bradyrhizobium_phage	1.4e-15	38.6
WP_016382052.1\|587294_587939_+	hypothetical protein	NA	NA	NA	NA
WP_016382051.1\|587935_588343_+	thioredoxin family protein	NA	NA	NA	NA
WP_016382050.1\|588332_589154_+	hypothetical protein	NA	NA	NA	NA
WP_003587040.1\|589756_589936_+	hypothetical protein	NA	NA	NA	NA
WP_003593118.1\|589976_590231_+	hypothetical protein	NA	NA	NA	NA
WP_016382049.1\|590220_590658_+	hypothetical protein	NA	NA	NA	NA
WP_076665404.1\|590650_591889_+	hypothetical protein	NA	NA	NA	NA
WP_016373124.1\|591929_592175_+	hypothetical protein	NA	NA	NA	NA
WP_076665402.1\|594707_594896_+	hypothetical protein	NA	NA	NA	NA
WP_010493218.1\|595048_595153_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_016382285.1\|595308_595698_-	hypothetical protein	NA	NA	NA	NA
WP_003582061.1\|595700_595844_-	hypothetical protein	NA	NA	NA	NA
WP_016382284.1\|595836_596286_-	hypothetical protein	NA	NA	NA	NA
WP_016382283.1\|596299_596590_-	hypothetical protein	NA	NA	NA	NA
WP_016382282.1\|596599_597046_-	hypothetical protein	NA	NA	NA	NA
WP_076665400.1\|597548_598442_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_003597616.1\|598447_598807_+	hypothetical protein	NA	NA	NA	NA
WP_003587111.1\|599910_602733_+	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	3.1e-73	27.7
WP_003582045.1\|602792_603056_+	hypothetical protein	NA	NA	NA	NA
WP_016379814.1\|603655_604504_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-42	37.1
WP_107791775.1\|604786_605709_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	4.7e-103	72.9
WP_016382198.1\|606052_606820_-	hypothetical protein	NA	NA	NA	NA
WP_016382195.1\|609211_611302_+	AAA family ATPase	NA	NA	NA	NA
WP_016382194.1\|611298_613086_+	AAA family ATPase	U5PSZ2	Bacillus_phage	2.9e-08	25.9
WP_169449944.1\|613160_614030_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_014569090.1\|614124_614682_+	hypothetical protein	NA	NA	NA	NA
WP_161515581.1\|615326_618014_+	VWA domain-containing protein	NA	NA	NA	NA
WP_031547232.1\|618006_618732_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_031547235.1\|618734_619739_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_123021574.1\|619812_620892_+	class C sortase	NA	NA	NA	NA
WP_016382272.1\|621362_621761_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_076638850.1\|621884_622100_-	hypothetical protein	NA	NA	NA	NA
WP_016382271.1\|622298_622808_-	AP2 domain-containing protein	A0A0M7RDN2	Lactobacillus_phage	2.2e-17	36.2
WP_002819966.1\|622837_623122_-	hypothetical protein	NA	NA	NA	NA
WP_003601979.1\|623127_623778_-	recombinase family protein	M9Q1K0	Clostridium_phage	1.5e-18	37.6
WP_003582572.1\|623853_624222_-	YxeA family protein	NA	NA	NA	NA
WP_003582569.1\|624516_624867_-	hypothetical protein	NA	NA	NA	NA
WP_003582565.1\|625161_625629_-	DNA starvation/stationary phase protection protein	A0A222Z0F3	Streptomyces_phage	1.6e-06	29.2
WP_108315962.1\|625842_626121_+\|transposase	transposase	Q6J1X3	Lactobacillus_phage	3.9e-29	94.3
WP_080988776.1\|626174_627017_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.7e-153	97.1
WP_016374492.1\|627244_627805_+	hypothetical protein	NA	NA	NA	NA
WP_016374491.1\|628068_628194_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	1.4e-15	92.7
WP_052915964.1\|628373_629216_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	4.3e-156	98.9
WP_011674977.1\|629484_630501_-\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	2.4e-36	33.4
WP_003582354.1\|630719_631637_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_003582352.1\|631783_632392_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.4e-50	52.8
WP_003582350.1\|632402_633671_+	NADPH-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	2.2e-50	48.2
WP_003582348.1\|633939_634368_+	hypothetical protein	NA	NA	NA	NA
WP_003582346.1\|634495_634672_+	hypothetical protein	NA	NA	NA	NA
WP_052915965.1\|635541_636225_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.5e-58	50.9
WP_004563097.1\|637195_637612_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	3.9e-33	56.9
WP_003582108.1\|637634_637970_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_003582109.1\|638006_639302_-	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	2.0e-144	61.9
WP_016386656.1\|639997_640681_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.8e-59	51.3
WP_003581966.1\|641234_641498_+	hypothetical protein	NA	NA	NA	NA
WP_016368446.1\|641458_642109_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.3e-18	33.8
WP_003581971.1\|642105_642876_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_003581973.1\|642983_644306_-	xyloside transporter XynT	NA	NA	NA	NA
WP_165847360.1\|645415_645907_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1X9I6C6	Streptococcus_phage	4.1e-21	44.4
WP_076625635.1\|646133_646313_-	hypothetical protein	NA	NA	NA	NA
WP_081320396.1\|646576_646714_+	DNA methyltransferase	NA	NA	NA	NA
WP_147658280.1\|646668_647452_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_003585701.1\|647727_649260_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_003567800.1\|649259_650219_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.8e-28	32.9
WP_060417290.1\|650224_651550_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003574021.1\|651600_652521_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.3e-22	35.0

DBSCAN-SWA_2

789398 : 816326

uncultured_Caudovirales_phage(26.09%)

terminase,integrase,portal,head,capsid,tail

attL 791325:791341|attR 805161:805177

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016382137.1\|789398_790550_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	2.7e-55	34.1
WP_080647120.1\|790600_791224_-	helix-turn-helix transcriptional regulator	A0A1P8BMN9	Lactococcus_phage	1.3e-08	45.5
791325:791341	attL	NA	NA	NA	NA
WP_101494962.1\|791387_791585_+	helix-turn-helix transcriptional regulator	D7RWM4	Brochothrix_phage	2.4e-09	51.7
WP_016382134.1\|791575_791881_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016382133.1\|791960_792371_+	hypothetical protein	NA	NA	NA	NA
WP_016382131.1\|792481_792673_+	hypothetical protein	NA	NA	NA	NA
WP_016382130.1\|792720_792993_+	hypothetical protein	NA	NA	NA	NA
WP_015764281.1\|792989_793178_+	hypothetical protein	NA	NA	NA	NA
WP_016382129.1\|793161_793989_+	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	4.5e-12	32.5
WP_016382128.1\|793981_795406_+	phage protein	A0A1W6JQD6	Staphylococcus_phage	1.1e-63	37.3
WP_016382127.1\|795675_796098_+	hypothetical protein	A0A2H4JHE6	uncultured_Caudovirales_phage	1.5e-11	40.2
WP_050569253.1\|796128_796554_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	1.9e-14	41.4
WP_003571972.1\|796678_797149_+\|terminase	phage terminase small subunit P27 family	M1PKP2	Streptococcus_phage	1.9e-07	29.3
WP_016382125.1\|797145_798849_+\|terminase	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	1.2e-117	41.9
WP_016382124.1\|798814_798994_+	hypothetical protein	NA	NA	NA	NA
WP_016382123.1\|798998_800183_+\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	1.8e-59	34.7
WP_016382122.1\|800169_801738_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	2.3e-41	25.8
WP_003586097.1\|801796_802087_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_013245616.1\|802070_802412_+\|head	phage head closure protein	I7AUE6	Enterococcus_phage	1.2e-08	38.4
WP_016382137.1\|803307_804459_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	2.7e-55	34.1
WP_080647120.1\|804509_805133_-	helix-turn-helix transcriptional regulator	A0A1P8BMN9	Lactococcus_phage	1.3e-08	45.5
WP_101494962.1\|805296_805494_+	helix-turn-helix transcriptional regulator	D7RWM4	Brochothrix_phage	2.4e-09	51.7
805161:805177	attR	NA	NA	NA	NA
WP_016382134.1\|805484_805790_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016382133.1\|805869_806280_+	hypothetical protein	NA	NA	NA	NA
WP_016382131.1\|806390_806582_+	hypothetical protein	NA	NA	NA	NA
WP_016382130.1\|806629_806902_+	hypothetical protein	NA	NA	NA	NA
WP_015764281.1\|806898_807087_+	hypothetical protein	NA	NA	NA	NA
WP_016382129.1\|807070_807898_+	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	4.5e-12	32.5
WP_016382128.1\|807890_809315_+	phage protein	A0A1W6JQD6	Staphylococcus_phage	1.1e-63	37.3
WP_016382127.1\|809584_810007_+	hypothetical protein	A0A2H4JHE6	uncultured_Caudovirales_phage	1.5e-11	40.2
WP_050569253.1\|810037_810463_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	1.9e-14	41.4
WP_016382125.1\|811059_812763_+\|terminase	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	1.2e-117	41.9
WP_016382124.1\|812728_812908_+	hypothetical protein	NA	NA	NA	NA
WP_016382123.1\|812912_814097_+\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	1.8e-59	34.7
WP_016382122.1\|814083_815652_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	2.3e-41	25.8
WP_003586097.1\|815710_816001_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_013245616.1\|815984_816326_+\|head	phage head closure protein	I7AUE6	Enterococcus_phage	1.2e-08	38.4

DBSCAN-SWA_3

948598 : 990451

Lactobacillus_phage(92.86%)

terminase,integrase,portal,holin,protease,head,capsid,tail,tRNA

attL 934517:934531|attR 983759:983773

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
934517:934531	attL	NA	NA	NA	NA
WP_003578174.1\|948598_951010_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	68.4
WP_003564130.1\|951275_952919_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_003587481.1\|952923_953634_+	pseudouridine synthase	NA	NA	NA	NA
WP_003569458.1\|953776_953992_+	DNA-binding protein	NA	NA	NA	NA
WP_003569460.1\|954107_954929_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_003564134.1\|954925_955429_-	NUDIX hydrolase	NA	NA	NA	NA
WP_016382213.1\|955752_956892_-\|integrase	site-specific integrase	A0A0P0IXL3	Lactobacillus_phage	1.9e-215	98.4
WP_003598052.1\|957009_958077_-	Abi family protein	A0A0N7IRA5	Lactobacillus_phage	1.1e-207	100.0
WP_003598055.1\|958221_958653_-	hypothetical protein	A0A0P0IJV8	Lactobacillus_phage	6.8e-73	100.0
WP_012491228.1\|958722_959205_-	hypothetical protein	A0A0P0IZP3	Lactobacillus_phage	2.1e-83	100.0
WP_003598059.1\|959208_959502_-	hypothetical protein	A0A0P0HRW5	Lactobacillus_phage	5.7e-47	100.0
WP_003598061.1\|959680_960445_-	ion transporter	A0A1B0Y2S3	Lactobacillus_phage	9.1e-44	55.5
WP_003598062.1\|960458_960869_-	hypothetical protein	NA	NA	NA	NA
WP_016364605.1\|960870_961200_-	helix-turn-helix transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	1.1e-09	33.0
WP_003578190.1\|961473_961671_+	hypothetical protein	A0A0P0IK60	Lactobacillus_phage	5.2e-28	100.0
WP_016382214.1\|961667_962390_+	Rha family transcriptional regulator	A0A0P0IDD0	Lactobacillus_phage	6.9e-126	99.2
WP_003593164.1\|962397_962610_+	hypothetical protein	A0A0N7IRA6	Lactobacillus_phage	1.7e-29	98.6
WP_003657835.1\|962718_962943_+	DUF771 domain-containing protein	A0A0P0IQT9	Lactobacillus_phage	2.6e-39	100.0
WP_016382215.1\|963307_963622_+	hypothetical protein	NA	NA	NA	NA
WP_016382216.1\|963614_964364_+	DnaD domain protein	A0A0N7IRA7	Lactobacillus_phage	1.5e-35	56.1
WP_107791792.1\|964378_965203_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	3.0e-117	75.5
WP_022671500.1\|965202_965721_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA
WP_016372087.1\|965745_966177_-	hypothetical protein	NA	NA	NA	NA
WP_016382032.1\|966775_966985_+	hypothetical protein	A0A2D1GPJ8	Lactobacillus_phage	1.1e-28	85.5
WP_016382031.1\|967006_967225_+	helix-turn-helix transcriptional regulator	A0A0P0IXA5	Lactobacillus_phage	1.0e-32	98.6
WP_016382030.1\|967477_967912_+	autolysin regulatory protein ArpU	B4XYT9	Lactobacillus_phage	1.1e-51	74.1
WP_016382029.1\|968782_969850_+	hypothetical protein	Q6SE88	Lactobacillus_prophage	2.2e-72	41.5
WP_016372310.1\|969827_970199_+	ASCH domain-containing protein	Q938L5	Temperate_phage	5.1e-24	43.6
WP_016382027.1\|970803_971184_+	HNH endonuclease	A0A0P0HRY0	Lactobacillus_phage	2.4e-69	96.8
WP_032769583.1\|971253_971628_+	hypothetical protein	A0A1B0YE76	Lactobacillus_phage	3.4e-60	97.6
WP_016382025.1\|971630_973361_+\|terminase	terminase large subunit	A0A0P0IJU3	Lactobacillus_phage	0.0e+00	99.7
WP_016382024.1\|973379_974615_+\|portal	phage portal protein	A0A0P0IZM3	Lactobacillus_phage	7.1e-232	98.8
WP_012491252.1\|974592_975300_+\|protease	Clp protease ClpP	A0A0P0HRU7	Lactobacillus_phage	7.2e-128	100.0
WP_016382023.1\|975304_976534_+\|capsid	phage major capsid protein	A0A1B0YA73	Lactobacillus_phage	9.9e-226	99.0
WP_016382022.1\|976607_976856_+	hypothetical protein	A0A0P0I3K0	Lactobacillus_phage	1.3e-36	96.3
WP_003582271.1\|976869_977196_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B0Y2R7	Lactobacillus_phage	7.0e-54	100.0
WP_012491255.1\|977134_977473_+\|head	phage head closure protein	A0A0N7IRA3	Lactobacillus_phage	2.2e-58	100.0
WP_012491256.1\|977456_977786_+	hypothetical protein	A0A0P0IDB8	Lactobacillus_phage	3.1e-57	100.0
WP_016382021.1\|977775_978159_+	hypothetical protein	A0A0P0IQS9	Lactobacillus_phage	1.9e-66	96.1
WP_016382020.1\|978170_978818_+	hypothetical protein	A0A0P0I7R6	Lactobacillus_phage	1.9e-114	96.3
WP_016382019.1\|978894_979260_+	hypothetical protein	A0A1B0Y865	Lactobacillus_phage	5.1e-61	98.3
WP_003582283.1\|979340_979502_+	hypothetical protein	A0A0P0IJV2	Lactobacillus_phage	7.5e-25	100.0
WP_016382018.1\|979521_982692_+\|tail	phage tail tape measure protein	A0A1B0YA78	Lactobacillus_phage	0.0e+00	98.6
WP_016382017.1\|982698_983394_+\|tail	tail protein	A0A0P0HRV6	Lactobacillus_phage	1.0e-126	98.3
WP_016382016.1\|983390_987812_+\|tail	phage tail protein	A0A1B0Y2S0	Lactobacillus_phage	0.0e+00	87.3
983759:983773	attR	NA	NA	NA	NA
WP_016382015.1\|987840_988266_+	DUF1617 family protein	A0A1B0Y2S1	Lactobacillus_phage	3.3e-72	99.3
WP_016382014.1\|988268_988538_+	hypothetical protein	A0A0P0I3K6	Lactobacillus_phage	3.8e-37	96.6
WP_016382013.1\|988584_988878_+	hypothetical protein	A0A0P0IK41	Lactobacillus_phage	3.7e-46	95.9
WP_016382012.1\|988867_989302_+\|holin	phage holin	A0A0P0IDC6	Lactobacillus_phage	7.9e-45	89.6
WP_012491267.1\|989301_989490_+	hypothetical protein	A0A0P0IQT6	Lactobacillus_phage	6.7e-25	100.0
WP_016382011.1\|989476_990451_+	hypothetical protein	A0A0P0I7S1	Lactobacillus_phage	1.7e-196	99.4

DBSCAN-SWA_4

1103943 : 1158335

Staphylococcus_phage(25.0%)

terminase,integrase,portal,head,capsid,tRNA

attL 1116546:1116562|attR 1161497:1161513

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003569677.1\|1103943_1104405_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_003569679.1\|1104854_1105751_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.9e-23	30.1
WP_003587534.1\|1105743_1107003_+	ABC transporter permease	NA	NA	NA	NA
WP_003569683.1\|1107136_1107679_-	exonuclease	A0A1S5SFA9	Streptococcus_phage	4.8e-23	41.0
WP_003569685.1\|1107690_1108449_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	6.9e-60	47.7
WP_016365007.1\|1108632_1109502_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_003569689.1\|1109523_1111632_+	sodium:proton antiporter	NA	NA	NA	NA
WP_003564356.1\|1111937_1112477_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003564358.1\|1112490_1113579_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	9.9e-36	42.6
WP_003564360.1\|1113678_1114503_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	1.3e-11	25.9
WP_003569692.1\|1114492_1115332_+	ABC transporter permease	NA	NA	NA	NA
WP_003569694.1\|1115315_1116389_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
1116546:1116562	attL	NA	NA	NA	NA
WP_003564368.1\|1116729_1116924_+	hypothetical protein	NA	NA	NA	NA
WP_003569696.1\|1116993_1117188_-	hypothetical protein	NA	NA	NA	NA
WP_003569698.1\|1117406_1120199_-	cation-transporting P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	1.6e-74	29.0
WP_003569700.1\|1120302_1120947_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003590309.1\|1120984_1122124_-	ABC transporter permease	NA	NA	NA	NA
WP_003569702.1\|1122113_1122848_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-27	35.8
WP_003564381.1\|1123111_1123969_+	TIGR00159 family protein	NA	NA	NA	NA
WP_003569703.1\|1123965_1125051_+	hypothetical protein	NA	NA	NA	NA
WP_003564385.1\|1125072_1126437_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_016381157.1\|1126752_1128564_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1GV45	Paramecium_bursaria_Chlorella_virus	5.8e-89	37.5
WP_016383098.1\|1128541_1128682_-	hypothetical protein	NA	NA	NA	NA
WP_003569705.1\|1128771_1130577_-	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_003587541.1\|1130651_1131143_+	VanZ family protein	NA	NA	NA	NA
WP_003564397.1\|1131213_1131945_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003569709.1\|1132070_1132937_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_003587543.1\|1132933_1133887_+	type II secretion system F family protein	NA	NA	NA	NA
WP_003564402.1\|1133889_1134213_+	type II secretion system protein	NA	NA	NA	NA
WP_003569714.1\|1134209_1134650_+	hypothetical protein	NA	NA	NA	NA
WP_003569715.1\|1134694_1134931_+	hypothetical protein	NA	NA	NA	NA
WP_003569716.1\|1134890_1135352_+	type II secretion system protein	NA	NA	NA	NA
WP_003569717.1\|1135335_1135668_+	hypothetical protein	NA	NA	NA	NA
WP_003569719.1\|1135770_1136781_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_003564414.1\|1136999_1137458_+	hypothetical protein	NA	NA	NA	NA
WP_016381730.1\|1137596_1138985_+	amino acid permease	NA	NA	NA	NA
WP_003564418.1\|1139184_1139949_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_003564420.1\|1139945_1140785_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_003564422.1\|1140785_1141742_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_003569724.1\|1141738_1142608_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_016381731.1\|1142885_1145177_+	alpha-galactosidase	NA	NA	NA	NA
WP_003569727.1\|1145447_1145756_-	hypothetical protein	NA	NA	NA	NA
WP_016380956.1\|1146027_1147176_-\|integrase	site-specific integrase	A0A097BYJ7	Leuconostoc_phage	1.0e-30	28.9
WP_016380957.1\|1147274_1147976_-	helix-turn-helix domain-containing protein	A0A1W6JQE6	Staphylococcus_phage	4.0e-06	38.0
WP_016380958.1\|1148123_1148402_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016380959.1\|1148469_1148691_+	hypothetical protein	NA	NA	NA	NA
WP_016380961.1\|1148801_1148993_+	hypothetical protein	NA	NA	NA	NA
WP_016380962.1\|1149041_1149332_+	hypothetical protein	NA	NA	NA	NA
WP_003571964.1\|1149328_1149517_+	hypothetical protein	NA	NA	NA	NA
WP_016382146.1\|1149500_1150313_+	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	6.7e-13	32.5
WP_016380374.1\|1150316_1151909_+	phage/plasmid primase P4 family protein	A0A1B1P7L5	Bacillus_phage	1.0e-25	27.6
WP_016380373.1\|1152229_1152565_+\|head	phage head closure protein	NA	NA	NA	NA
WP_016380372.1\|1152569_1152755_+	hypothetical protein	NA	NA	NA	NA
WP_016380371.1\|1152751_1153174_+	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	8.3e-23	46.7
WP_003574359.1\|1153290_1153761_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_016382145.1\|1153757_1155461_+\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	8.6e-119	42.5
WP_003574365.1\|1155426_1155606_+	hypothetical protein	NA	NA	NA	NA
WP_016382144.1\|1155610_1156789_+\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	2.2e-60	35.3
WP_016382143.1\|1156778_1158335_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	2.8e-39	26.5
1161497:1161513	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1246802 : 1287422

Lactobacillus_phage(94.74%)

terminase,integrase,portal,holin,transposase,head,capsid,tail

attL 1244228:1244243|attR 1249206:1249221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1244228:1244243	attL	NA	NA	NA	NA
WP_012491423.1\|1246802_1247987_-\|integrase	site-specific integrase	A0A0P0I3D2	Lactobacillus_phage	6.6e-227	100.0
WP_016382342.1\|1248076_1248280_-	hypothetical protein	A0A0P0IQK8	Lactobacillus_phage	4.0e-31	94.0
WP_003574518.1\|1248303_1248729_-	pyridoxamine 5'-phosphate oxidase family protein	A0A0P0I7K6	Lactobacillus_phage	2.7e-61	86.5
WP_003585060.1\|1248933_1249617_-	hypothetical protein	NA	NA	NA	NA
1249206:1249221	attR	NA	NA	NA	NA
WP_003574021.1\|1249881_1250802_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.3e-22	35.0
WP_003574521.1\|1251513_1251933_-	ImmA/IrrE family metallo-endopeptidase	A0A0P0IJN5	Lactobacillus_phage	5.6e-72	92.8
WP_016382305.1\|1251922_1252258_-	helix-turn-helix transcriptional regulator	A0A0P0IZG9	Lactobacillus_phage	1.0e-55	99.1
WP_016382304.1\|1252395_1252638_+	helix-turn-helix transcriptional regulator	A0A0P0HRP5	Lactobacillus_phage	1.3e-33	92.5
WP_003574526.1\|1252634_1252946_+	hypothetical protein	A0A1B0Y2Q8	Lactobacillus_phage	2.2e-52	100.0
WP_016373289.1\|1252942_1253152_-	hypothetical protein	A0A1B0Y3M6	Lactobacillus_phage	1.1e-31	98.6
WP_003585049.1\|1253239_1253386_+	hypothetical protein	A0A0P0IJX2	Lactobacillus_phage	1.7e-20	95.8
WP_016382303.1\|1253451_1254000_+	hypothetical protein	A0A1B0YE60	Lactobacillus_phage	6.0e-98	97.8
WP_016382302.1\|1253978_1254200_+	helix-turn-helix domain-containing protein	A0A0P0ID64	Lactobacillus_phage	2.6e-36	98.6
WP_032793675.1\|1254352_1254571_+	hypothetical protein	NA	NA	NA	NA
WP_016382299.1\|1254572_1254743_+	hypothetical protein	NA	NA	NA	NA
WP_076665449.1\|1254756_1255623_+	recombinase RecT	A0A1X9I5N6	Streptococcus_phage	2.3e-59	53.3
WP_016373294.1\|1255642_1256407_+	PD-(D/E)XK nuclease family protein	A0A0P0IZH9	Lactobacillus_phage	2.3e-79	55.2
WP_016381987.1\|1256418_1257336_+	DUF4373 domain-containing protein	A0A0P0HRQ2	Lactobacillus_phage	2.9e-89	57.5
WP_016381986.1\|1257347_1257833_+	single-stranded DNA-binding protein	A0A0P0IJE0	Lactobacillus_phage	1.8e-53	87.0
WP_004562022.1\|1258147_1258363_+	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	1.3e-32	100.0
WP_016381984.1\|1258359_1258809_+	hypothetical protein	A0A0P0ID70	Lactobacillus_phage	2.2e-61	85.2
WP_016381983.1\|1258855_1259110_+	hypothetical protein	U5U728	Lactobacillus_phage	1.2e-37	95.2
WP_016381982.1\|1259106_1259472_+	hypothetical protein	A0A0P0HRU0	Lactobacillus_phage	6.9e-66	99.2
WP_032793365.1\|1259485_1259596_+	hypothetical protein	A0A2D1GP93	Lactobacillus_phage	9.3e-11	91.7
WP_016381981.1\|1259592_1260117_+	DUF1642 domain-containing protein	Q8LTB6	Lactobacillus_phage	2.1e-60	71.5
WP_016381980.1\|1260103_1260373_+	hypothetical protein	NA	NA	NA	NA
WP_016381979.1\|1260362_1260689_+	hypothetical protein	Q6J1U7	Lactobacillus_phage	8.1e-18	44.5
WP_016381978.1\|1260685_1261039_+	hypothetical protein	A0A2D1GPL5	Lactobacillus_phage	6.3e-32	81.2
WP_016381977.1\|1261025_1261424_+	hypothetical protein	C1KFE5	Lactobacillus_virus	5.1e-30	56.1
WP_016381976.1\|1261420_1261630_+	hypothetical protein	A0A2D1GPJ8	Lactobacillus_phage	4.5e-30	88.4
WP_016381975.1\|1261666_1261954_+	hypothetical protein	Q8LTA8	Lactobacillus_phage	8.3e-51	94.7
WP_012491447.1\|1262027_1262225_+	hypothetical protein	A0A1B0Y850	Lactobacillus_phage	2.8e-29	100.0
WP_016381973.1\|1262396_1262840_+	autolysin regulatory protein ArpU	A0A0P0IZI6	Lactobacillus_phage	1.0e-76	95.9
WP_052915996.1\|1263471_1264095_+	hypothetical protein	NA	NA	NA	NA
WP_016381971.1\|1264124_1265342_+	hypothetical protein	A0A2D1GPQ9	Lactobacillus_phage	1.8e-235	96.8
WP_016381970.1\|1265328_1265658_+	hypothetical protein	A0A0P0IJY9	Lactobacillus_phage	1.1e-49	87.7
WP_016381969.1\|1265694_1266267_+\|terminase	terminase small subunit	A0A0P0IUY4	Lactobacillus_phage	6.9e-81	95.8
WP_016381968.1\|1266250_1267504_+\|terminase	PBSX family phage terminase large subunit	A0A0P0I3B0	Lactobacillus_phage	2.5e-248	98.8
WP_032793367.1\|1267508_1268936_+\|portal	phage portal protein	A0A0P0IJV3	Lactobacillus_phage	4.6e-259	97.7
WP_016381966.1\|1268901_1269888_+\|capsid	minor capsid protein	A0A0P0ID43	Lactobacillus_phage	1.8e-177	95.4
WP_003575596.1\|1269897_1270224_+	hypothetical protein	A0A0P0IJR5	Lactobacillus_phage	4.7e-50	91.7
WP_003575593.1\|1270220_1270655_+	hypothetical protein	NA	NA	NA	NA
WP_016381965.1\|1270796_1271438_+	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	4.7e-78	85.0
WP_003605853.1\|1271450_1271765_+	hypothetical protein	A0A0N7IR89	Lactobacillus_phage	2.7e-50	100.0
WP_016381964.1\|1271778_1272819_+\|capsid	major capsid protein	A0A0P0I7J2	Lactobacillus_phage	9.7e-190	99.1
WP_016381963.1\|1272948_1273296_+	hypothetical protein	A0A0P0IXC0	Lactobacillus_phage	2.2e-29	98.5
WP_016381962.1\|1273299_1274178_+	hypothetical protein	A0A0P0IJL6	Lactobacillus_phage	7.7e-180	99.7
WP_003605845.1\|1274177_1274552_+\|head,tail	phage head-tail connector protein	A0A0P0IZF6	Lactobacillus_phage	4.3e-63	98.4
WP_016381961.1\|1274556_1274859_+	hypothetical protein	A0A0P0HRN0	Lactobacillus_phage	2.6e-47	89.0
WP_016381960.1\|1274855_1275221_+	hypothetical protein	A0A0P0I3G7	Lactobacillus_phage	2.2e-56	94.2
WP_016380683.1\|1275221_1275626_+	DUF3168 domain-containing protein	A0A0P0IQB5	Lactobacillus_phage	1.0e-70	98.5
WP_016381959.1\|1275637_1276240_+\|tail	phage major tail protein	A0A0P0ID88	Lactobacillus_phage	6.4e-101	94.0
WP_032793358.1\|1276326_1276659_+	phage protein	A0A0P0IQQ6	Lactobacillus_phage	3.7e-50	95.5
WP_005711407.1\|1276763_1277117_+	hypothetical protein	A0A0P0I7N9	Lactobacillus_phage	2.4e-55	97.4
WP_016381957.1\|1277109_1280199_+	tape measure protein	A0A0P0IJD2	Lactobacillus_phage	3.9e-279	93.9
WP_016381956.1\|1280201_1282265_+\|tail	phage tail family protein	A0A0P0IJR2	Lactobacillus_phage	8.4e-161	47.6
WP_016381955.1\|1282264_1284787_+\|tail	phage tail protein	B4XYQ5	Lactobacillus_phage	2.4e-149	41.2
WP_016381954.1\|1284798_1285074_+	phage protein	A0A0P0IZK1	Lactobacillus_phage	5.2e-10	41.2
WP_016381953.1\|1285066_1285198_+	XkdX family protein	A0A0P0HRS7	Lactobacillus_phage	7.2e-18	95.3
WP_016381952.1\|1285228_1285615_+	hypothetical protein	U5U712	Lactobacillus_phage	2.1e-65	98.4
WP_016381951.1\|1285595_1285802_+	hypothetical protein	A0A2D1GPJ3	Lactobacillus_phage	5.5e-12	97.4
WP_016381950.1\|1285798_1286245_+\|holin	phage holin	A8YQK6	Lactobacillus_phage	9.3e-65	95.9
WP_016381949.1\|1286255_1287422_+	LysM peptidoglycan-binding domain-containing protein	A0A0P0HRN9	Lactobacillus_phage	3.8e-166	76.4

DBSCAN-SWA_6

2469226 : 2570872

Bacillus_phage(23.53%)

transposase,bacteriocin,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016366615.1\|2469226_2470633_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	2.0e-52	30.6
WP_003580769.1\|2471020_2472415_-	FAD-binding protein	NA	NA	NA	NA
WP_003580771.1\|2472540_2473128_-	hypothetical protein	NA	NA	NA	NA
WP_003580773.1\|2473127_2473319_-	hypothetical protein	NA	NA	NA	NA
WP_003576207.1\|2473794_2475288_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_003580775.1\|2475435_2476416_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_016380703.1\|2476531_2477203_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA
WP_003567235.1\|2477386_2478217_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_003577825.1\|2478362_2479202_-\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA
WP_003577828.1\|2479214_2480231_-	membrane protein	NA	NA	NA	NA
WP_003567242.1\|2480237_2480612_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003577830.1\|2480776_2482048_-	MucBP domain-containing protein	NA	NA	NA	NA
WP_016381824.1\|2482213_2484379_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	1.1e-38	28.0
WP_003577835.1\|2484479_2484593_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_080596037.1\|2484636_2484747_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003577837.1\|2484784_2485561_-	ABC transporter permease	NA	NA	NA	NA
WP_016366635.1\|2485564_2486470_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-34	39.0
WP_003580795.1\|2486750_2487647_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
WP_003567252.1\|2487750_2488866_-	PIN/TRAM domain-containing protein	NA	NA	NA	NA
WP_003580798.1\|2488887_2490252_-	DNA repair protein RadA	NA	NA	NA	NA
WP_003567256.1\|2490268_2490811_-	dUTP diphosphatase	J9PV85	Bacillus_phage	8.1e-39	48.6
WP_003567258.1\|2491032_2491323_+	N-acetyltransferase	NA	NA	NA	NA
WP_003567260.1\|2491437_2491815_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003571381.1\|2492059_2493379_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	9.2e-60	34.5
WP_003576225.1\|2493611_2494958_+	C1 family peptidase	A0A2H4UTL8	Bodo_saltans_virus	6.9e-47	29.8
WP_003580801.1\|2495185_2496286_+	hypothetical protein	NA	NA	NA	NA
WP_003580803.1\|2496282_2497479_+	hypothetical protein	NA	NA	NA	NA
WP_003576231.1\|2497541_2498420_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-12	26.4
WP_003567271.1\|2498581_2500636_+	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	9.5e-64	33.3
WP_016381637.1\|2500793_2503424_-	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	8.4e-89	40.0
WP_003576237.1\|2503585_2504209_-	CBS domain-containing protein	NA	NA	NA	NA
WP_016381826.1\|2504708_2505380_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_003580809.1\|2505892_2507014_+	low temperature requirement protein A	NA	NA	NA	NA
WP_003567280.1\|2507027_2507312_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_003585543.1\|2507502_2508618_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003567284.1\|2508805_2509012_-	CsbD family protein	NA	NA	NA	NA
WP_003567286.1\|2509143_2509401_-	hypothetical protein	NA	NA	NA	NA
WP_003567288.1\|2509471_2509678_-	hypothetical protein	NA	NA	NA	NA
WP_003567290.1\|2509902_2510154_-	hypothetical protein	NA	NA	NA	NA
WP_003567292.1\|2510481_2511714_+	MFS transporter	NA	NA	NA	NA
WP_003580815.1\|2511792_2513049_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.2e-106	54.0
WP_003585549.1\|2513137_2513971_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.6e-47	42.4
WP_003567298.1\|2514287_2514482_-	hypothetical protein	NA	NA	NA	NA
WP_003580821.1\|2514735_2515272_-	hypothetical protein	NA	NA	NA	NA
WP_003580823.1\|2515460_2516684_-	hypothetical protein	NA	NA	NA	NA
WP_016381827.1\|2517272_2518100_-	class C sortase	NA	NA	NA	NA
WP_003580826.1\|2518106_2519666_-	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_003580827.1\|2519662_2520985_-	hypothetical protein	NA	NA	NA	NA
WP_003585557.1\|2520986_2523992_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_003580832.1\|2524269_2524827_-	hypothetical protein	NA	NA	NA	NA
WP_003580834.1\|2524921_2526118_-	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_003585559.1\|2526326_2527382_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_003580838.1\|2527652_2528300_+	helix-turn-helix transcriptional regulator	A0A0S2MVM8	Bacillus_phage	1.7e-06	37.5
WP_003567322.1\|2528435_2528765_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_003580841.1\|2528761_2529550_+	hypothetical protein	NA	NA	NA	NA
WP_003580842.1\|2529602_2530391_+	hypothetical protein	NA	NA	NA	NA
WP_003567328.1\|2530435_2530714_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003580845.1\|2530737_2531022_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003580847.1\|2531214_2531511_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003567335.1\|2531612_2532968_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_003580849.1\|2533273_2533585_-	hypothetical protein	NA	NA	NA	NA
WP_003567340.1\|2533657_2534008_-	hypothetical protein	NA	NA	NA	NA
WP_003585563.1\|2534181_2535561_-\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_016381944.1\|2535571_2537764_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	1.1e-36	26.7
WP_003571414.1\|2538229_2538367_-	hypothetical protein	NA	NA	NA	NA
WP_003580853.1\|2538556_2539855_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_003567351.1\|2539859_2540666_+	response regulator transcription factor	NA	NA	NA	NA
WP_016383118.1\|2541027_2541225_-	hypothetical protein	NA	NA	NA	NA
WP_003580868.1\|2541771_2542011_+	hypothetical protein	NA	NA	NA	NA
WP_032675994.1\|2542270_2542444_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003567358.1\|2542478_2542667_-\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_003567359.1\|2542988_2543213_+	hypothetical protein	NA	NA	NA	NA
WP_003580872.1\|2544013_2544826_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003580874.1\|2545383_2545716_-	hypothetical protein	NA	NA	NA	NA
WP_003576306.1\|2545967_2546159_-	hypothetical protein	NA	NA	NA	NA
WP_003580886.1\|2546477_2546813_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003580888.1\|2546931_2547528_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_003659595.1\|2547798_2548107_-	hypothetical protein	NA	NA	NA	NA
WP_003567374.1\|2548242_2548458_-	hypothetical protein	NA	NA	NA	NA
WP_003567376.1\|2548454_2548688_-	hypothetical protein	NA	NA	NA	NA
WP_016380549.1\|2548959_2549913_-	aldo/keto reductase	A0A1V0SDE7	Indivirus	3.7e-10	24.6
WP_003580891.1\|2550117_2550852_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_016380884.1\|2550877_2552041_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_016381946.1\|2552302_2553679_-	class II fumarate hydratase	NA	NA	NA	NA
WP_003567386.1\|2553811_2554570_-	hypothetical protein	NA	NA	NA	NA
WP_003567390.1\|2554861_2556469_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_016380888.1\|2556856_2559574_+	HAD-IC family P-type ATPase	M1HJQ2	Paramecium_bursaria_Chlorella_virus	2.6e-61	29.0
WP_003580900.1\|2559874_2560240_+	hypothetical protein	NA	NA	NA	NA
WP_016382205.1\|2560393_2561767_-	MFS transporter	NA	NA	NA	NA
WP_003585581.1\|2561806_2563336_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_003567401.1\|2563462_2563654_+	hypothetical protein	NA	NA	NA	NA
WP_003567403.1\|2563782_2564421_+	cation transporter	NA	NA	NA	NA
WP_003567405.1\|2564441_2564774_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003567408.1\|2564894_2565836_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003567411.1\|2565832_2566729_-	metal ABC transporter permease	NA	NA	NA	NA
WP_003567413.1\|2566725_2567469_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-12	25.9
WP_016380869.1\|2567744_2569211_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_003567416.1\|2569411_2569681_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_011674977.1\|2569855_2570872_-\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	2.4e-36	33.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP052066

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7981 : 57721

Staphylococcus_phage(22.22%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016379810.1\|7981_8101_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_003583464.1\|8254_8407_-	hypothetical protein	NA	NA	NA	NA
WP_080647125.1\|8388_8643_-	hypothetical protein	NA	NA	NA	NA
WP_003582061.1\|8645_8789_-	hypothetical protein	NA	NA	NA	NA
WP_016382279.1\|8781_9231_-	hypothetical protein	NA	NA	NA	NA
WP_003597610.1\|9244_9535_-	hypothetical protein	NA	NA	NA	NA
WP_016382278.1\|9544_9991_-	hypothetical protein	NA	NA	NA	NA
WP_107791783.1\|10494_11388_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_003597616.1\|11393_11753_+	hypothetical protein	NA	NA	NA	NA
WP_161515593.1\|11760_12548_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_108315960.1\|12615_13884_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	5.1e-15	28.8
WP_016382232.1\|13873_15496_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.3e-127	50.3
WP_016382233.1\|15509_18677_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	5.3e-21	22.8
WP_012807380.1\|19419_20331_+	cysteine synthase family protein	A0A1W6JIM2	Lactococcus_phage	2.8e-60	41.7
WP_003586331.1\|20352_21537_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_003586333.1\|21502_22060_+	serine acetyltransferase	NA	NA	NA	NA
WP_003586198.1\|23213_24101_-	EamA family transporter	NA	NA	NA	NA
WP_003586192.1\|24927_25320_-	galactokinase	NA	NA	NA	NA
WP_016382253.1\|25525_27406_+	beta-galactosidase large subunit / lactate large subunit	L0N6M2	Herpes_simplex_virus	2.2e-99	35.6
WP_169449947.1\|27389_28349_+	beta-galactosidase small subunit	NA	NA	NA	NA
WP_161515594.1\|29523_30310_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_108315959.1\|30206_31244_-	Y-family DNA polymerase	M1Q231	Streptococcus_phage	2.6e-62	41.2
WP_021353390.1\|31484_31574_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_003592338.1\|32040_33390_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	8.6e-122	49.7
WP_071799104.1\|33431_33626_+\|transposase	transposase	NA	NA	NA	NA
WP_003561303.1\|33973_34294_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_032793595.1\|34383_34761_+\|transposase	transposase	NA	NA	NA	NA
WP_003606765.1\|34747_35071_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014566439.1\|35414_36293_+	PRD domain-containing protein	NA	NA	NA	NA
WP_016382210.1\|36413_38147_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_003589794.1\|38173_39598_+	6-phospho-beta-galactosidase	NA	NA	NA	NA
WP_003589792.1\|39646_39982_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_123031244.1\|40300_41088_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_016382247.1\|41387_44186_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_016382246.1\|44354_45650_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_107791777.1\|45865_46252_+	PTS protein	NA	NA	NA	NA
WP_003572522.1\|46257_46749_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_016380647.1\|46755_47505_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_016382244.1\|47504_48359_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_161515595.1\|48383_49484_+	DgaE family pyridoxal phosphate-dependent ammonia lyase	NA	NA	NA	NA
WP_161515596.1\|49498_50263_+	oxo-acid lyase	NA	NA	NA	NA
WP_161515597.1\|50468_51326_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-32	34.6
WP_032793680.1\|52455_53166_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003586168.1\|53179_53662_+	PTS N-acetylgalactosamine transporter subunit IIB	NA	NA	NA	NA
WP_003586170.1\|53662_54472_+	PTS N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA
WP_003586172.1\|54461_55274_+	PTS N-acetylgalactosamine transporter subunit IID	NA	NA	NA	NA
WP_016382315.1\|55275_55704_+	PTS,N-acetylglucosamine/galactosamine EIIA component	NA	NA	NA	NA
WP_014569083.1\|56809_57721_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	7.0e-35	34.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP052065

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP052066

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection