CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048833	Pseudomonas multiresinivorans strain populi chromosome, complete genome	1 crisprs	csa3,DEDDh,DinG,cas3	0	1	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048833_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048833_1

5790378-5790508

Orphan

Consensus_repeat	Method
CATTTGCCTTCACCGCACTTGCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP048833_1

>merge|NZ_CP048833|1|5790378-5790508|CRISPRCasFinder
CATTTGCCTTCACCGCACTTGCCCTCGGCGCCAGTGGCCTTGGCCTGGGCGCCATCGGCACCGCATTTGCCTTCGCCGCACTTGCCTTCAGTCTGGCTGGCCTTGGTTTGCTTGGCGGCGCCGCACTTGCC

>NZ_CP048833|1|1|5790378-5790508|CRISPRCasFinder
CATTTGCCTTCACCGCACTTGCC	CTCGGCGCCAGTGGCCTTGGCCTGGGCGCCATCGGCACCG
CATTTGCCTTCGCCGCACTTGCC	TTCAGTCTGGCTGGCCTTGGTT
TGCTTGGCGGCGCCGCACTTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048833.1\|WP_169942815.1\|5786482_5787907_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP048833.1\|WP_024767564.1\|5781955_5782696_+\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP048833.1\|WP_169941461.1\|5782692_5784003_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP048833.1\|WP_169941465.1\|5784885_5785395_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP048833.1\|WP_169941472.1\|5789245_5790085_-\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|235447
NZ_CP048833.1\|WP_024767565.1\|5781458_5781731_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP048833.1\|WP_169941478.1\|5794115_5795786_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP048833.1\|WP_169941470.1\|5788464_5789253_-\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP048833.1\|WP_037008260.1\|5793587_5793932_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048833.1\|WP_169941468.1\|5788045_5788468_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP048833.1\|WP_169941467.1\|5785462_5786401_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP048833.1\|WP_169941476.1\|5791879_5793208_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP048833.1\|WP_169941463.1\|5784139_5784778_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048833.1\|WP_169941487.1\|5800771_5801212_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|226769
NZ_CP048833.1\|WP_024767555.1\|5791051_5791429_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
NZ_CP048833.1\|WP_169941489.1\|5801233_5802016_-\|DUF899-domain-containing-protein	unknown	unknown	gnl\|CDD\|377584
NZ_CP048833.1\|WP_169941482.1\|5797259_5798033_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP048833.1\|WP_169941485.1\|5799284_5800538_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NZ_CP048833.1\|WP_169941483.1\|5798029_5799226_-\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP048833.1\|WP_169941480.1\|5796169_5796973_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781

Protein	Function_ID	Function_description	E-value
NZ_CP048833.1\|WP_169942815.1\|5786482_5787907_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.76301e-94
NZ_CP048833.1\|WP_024767564.1\|5781955_5782696_+\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	4.30761e-79
NZ_CP048833.1\|WP_169941461.1\|5782692_5784003_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.50662e-46
NZ_CP048833.1\|WP_169941465.1\|5784885_5785395_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.96751e-17
NZ_CP048833.1\|WP_169941472.1\|5789245_5790085_-\|DUF692-domain-containing-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	1.60142e-140
NZ_CP048833.1\|WP_024767565.1\|5781458_5781731_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.61072e-26
NZ_CP048833.1\|WP_169941478.1\|5794115_5795786_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.93125e-60
NZ_CP048833.1\|WP_169941470.1\|5788464_5789253_-\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	2.96324e-61
NZ_CP048833.1\|WP_169941489.1\|5801233_5802016_-\|DUF899-domain-containing-protein	gnl\|CDD\|377584	pfam05988, DUF899, Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.	7.68443e-112
NZ_CP048833.1\|WP_169941468.1\|5788045_5788468_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	7.40865e-62
NZ_CP048833.1\|WP_169941467.1\|5785462_5786401_-\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	1.433e-21
NZ_CP048833.1\|WP_169941476.1\|5791879_5793208_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	0
NZ_CP048833.1\|WP_169941487.1\|5800771_5801212_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	2.0867e-29
NZ_CP048833.1\|WP_024767555.1\|5791051_5791429_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	5.72797e-28
NZ_CP048833.1\|WP_169941482.1\|5797259_5798033_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	2.64323e-80
NZ_CP048833.1\|WP_169941485.1\|5799284_5800538_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	9.72187e-166
NZ_CP048833.1\|WP_169941483.1\|5798029_5799226_-\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.13293e-84
NZ_CP048833.1\|WP_169941480.1\|5796169_5796973_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	2.18253e-89

>NZ_CP048833.1|WP_169941472.1|5789245_5790085_-|DUF692-domain-containing-protein
MTTSLDGAGLGLRRALLPDLLTMDDRAVDFLEVAPDNWIGVGGSYGEGLARLAERFTLSCHGLSLSLGGPEPLDHVFLHRVREFLDQHHVPLFSEHLSYCSDEGHLYDLIPMPFTDEAVRHIAGRIREVQDILGRRIAVENISYYAAPYQALSEIDFLRAVLSEADCDLLLDVNNLYVNAHNHSYDAAGFLARVPADRVVCLHVAGHYDEAPDLKVDTHGAAVKDDVWTLLTSAYQHLGTVPTLLERDFNLPPLAELLGEVDYIRRLQSTVRQPEVRHG
>NZ_CP048833.1|WP_169941470.1|5788464_5789253_-|putative-DNA-binding-domain-containing-protein
MAESLREQQLRMTRFIRDPQANEPPPGIEARRLAVYRQLFFGNLQSLLAGNFPVLHGSLAHEHWQALTEDFYAGFRCQTPLFTEVAGEFVDYLESRGEQPGWVAELAHYEWIETALLLSDKAEPAHDPDGDLLEGVPQLSSLALPLAYVWPVSHIGPGHIPQQAPVEPTLLLARRGADLKVHFSRLAPLAHALLVSLQQWQLTGREHLKALAEIVGIELAAIEEQGIALLRSLKEQGVVIGTRPNCTTPRRPHLARTEGEAS
>NZ_CP048833.1|WP_169941468.1|5788045_5788468_-|organic-hydroperoxide-resistance-protein
MTDTLASVIYTAHTHTTGGRDGRGQTVDGDLDLPLSPPGSGRPGTNPEQLFAIGWSACFIGALRRAGQKLNVRLPADVAVDAEVYLGNTADGGFALAARLTVHLPGLAAEDKAKLVDEAHQICPYSKATRGNIEVGFVIP
>NZ_CP048833.1|WP_169942815.1|5786482_5787907_+|PLP-dependent-aminotransferase-family-protein
MTVKTYIDTVSILRHALESGRGVKYKRLASALELCILDGSLAAGGKLIPQRILAYKLNVTVGTVSRAYAELERMGLVVPRVGDGTFVRRHGLERKRDEGYRNVAESPAFCDMSRNLHIPGAETSLLAKSLMNLAQDVGTLGELMTYTPEAGLPRFRAAGAKWLSSHGFHAHPEQVLCTNGSQHALLCTLMALLRPGDTLVTEPLTYPGLISAARLLGIRLLAATMDDDGLLPHSLDELCRLHRVTALYCTPTLQNPTTSILPTERRQAIATICREHNLLIIEDETHAVLLEDRPAPLSHFAPERSILIGGMSKAVAAGLRVGYLHAPVAMVSRLSAALRGSCWMATPLPLELATRWIDDGTAQILLQQQAAEIDRRKALVTQLLDGLNYRTHSRSPHFWIQVPEPWRASDVESDLAAKHYRIATAESFAVGHAAVPQFVRVSICDGAMDDLQLCLGFQTLSVALDSDSASTERS
>NZ_CP048833.1|WP_169941467.1|5785462_5786401_-|EamA-family-transporter
MTISATRELSTIARRQLAGAVTVVLFLTVCLSWGTTWLGIRIAVETVPPLTASGLRFLIAFPLFLAFARLRGDAIVFPRRSSGFFIFVTLCYFGVPYFLLNYGETLVSSGLAALLFSCMPVFILIFSAIFLRERIQTLQVIGIAIGFASLYMILREQGLGFEHQDFIGVLAILAAALMHALCYVVTKQKGSAISVITYNTLPIGLAGLALFSFGLLVEQPSFSQISARSWWALTYLGLCASVGGFLVYFFLLKRLSPVVLSFVFIIFPVFAVIIGAWYEGQAISTSLALYSLLLLLGFAITKLPPPSLFVRK
>NZ_CP048833.1|WP_169941465.1|5784885_5785395_+|DoxX-family-protein
MTLLTLNPLKTAFDQLDRLAAWGWDVPLRLFLAWEFFESGLEKWHGDNWFEQIHASFPFPFNHFSAGFDWQVSMWAELIAPVLLLLGLATRFASASLIVVTIVAIAAVHWPAQWSTLSELAQGYSITDHGFGNYKLPLIYLVALVPLVLKGAGALSVDGMTSRLHRSRA
>NZ_CP048833.1|WP_169941463.1|5784139_5784778_+|hypothetical-protein
MNRPAENASLHGWRLFSLLSALVLLATALALWSQPQWVEALRSAIRVTARTSFALFLATFLASSLMALVPSGFTRGLLRERRFLGLAFAFSHAVHAVLIILYVKFFPETFWHGRSAAANIPGSVGYVFILLLTLASFPYAMRLLGARAWKLLHSTGTWVIAGVFLLSFYKRLPMGSWYPLGFGLIFSAIAFKLVAKQAVRLRRSARPALPNA
>NZ_CP048833.1|WP_169941461.1|5782692_5784003_+|HAMP-domain-containing-histidine-kinase
MKSVLHWPRTLAARLALIFLAGLVFAYSLSFCSQFYERYQSARSMMLGNLETDVSTAVALLDRLPRDEREAWLPMVQRPNYRYRLDGGEPGEPMNMAQAPMAATSIADAIGPRYGLRFETIPGSIPHFQAHLKLADGMPLTIDVTPKGVPVAQWLPWVLIVQLALLLFCTWIAVRLAIRPLTRLAQAVDHLDPDAPAPELDERGPSEVAYAARAFNALQGRIGSYLKERMQLLAAISHDLQTPITRMKLRVEQMDDSPERERLWSDLEEMQHLVREGVAYARSMDGASEAAVKVNFDSFLDSLVLDYQDSGQAVELQGSSNVVLETRPHALRRVLTNLVDNALKFGGAAQVQVERDALGVVCIRVLDDGPGIPEEELTEVVKPFYRVESSRNRGTGGTGLGLAIAQQLSQALGGTLSLSNRATGGLCAQLELRPAS
>NZ_CP048833.1|WP_024767564.1|5781955_5782696_+|response-regulator
MDHVDHVLIVDDDREIRELVGNYLKKNGLRVSLAADGRQMRAFLDANSVDLIVLDIMMPGDDGLKLCRELRVGKHKSTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRTRMLPPNLQVSEASRLIGFGRWKLDTTARHLLDEDGTLVALSGAEYRLLRVFVDHPQRVLSREQLLNLTQGREADIFDRSIDLLVSRLRQRLLDDAREPAYIKTVRSEGYVFALAVELLEPNA
>NZ_CP048833.1|WP_024767565.1|5781458_5781731_-|DUF2790-domain-containing-protein
MKAIQLANACLFASLAAFASFGAQAADTQPVEQYHYGQKLDVKKVVAIQEEAASPFDCGIVNARMDYLDSHGQPHSLAYRKFATDCNEGG
>NZ_CP048833.1|WP_024767555.1|5791051_5791429_-|RidA-family-protein
MTPTFIPDADPESISSDVAGFGGLLVSTQIPTLEDGSLELGDIKAQSEATLRSLQLALEKAGSGLDHVLHLTIYLTSMADRAAFNEVYCSFFAKPYPVRAAVGIAELAVEGMKVEVTAIAAKRAG
>NZ_CP048833.1|WP_169941476.1|5791879_5793208_+|OprD-family-porin
MKHLKRSAIVLAVSAAASQFASAESFVTDQADAKGFVEDAKFDVLLRNQYYDHDGKNGAGDNRDWTQGFLANFSSGYTQGTVGFGVDAFGYLGIKLDAGRGRAGTGNLPVGNDGKPDDDYGKAGGALKVRISKTELKFGDMQPTAPVFAAGGTRLIPQTASGFNLLSSEIEGLDLEAGHFTSGTSPVTTARDGGLWAAYAGVETSDVDFLGGKYAINDNLSVSLYGSEFKDIWRQYYGNVNWVLPVANDQSLAFDFNIYRTNDEGQAKAGEISNTTWSLAAAYSFLQAHTVTLAYQKVHGDTPFDYVGFGDDGDGATGDSVFLANSVQYSDFNGPGERSWQVRYDLAMDTYGVPGLSFMARYINGTGIDGSHADADGAYAGLYGEDGSHHETDLEAKYVVQAGPAKDLSFRLRQAFHRANADQGEADNNEMRLIVEYPLSIL
>NZ_CP048833.1|WP_037008260.1|5793587_5793932_+|hypothetical-protein
MSAMTLEGWCKTTAEQKPTPLEDIRFYLTDQDRLHLEQAEVYLQENGQREMMVDADLDTLDLHMPEGYGPLADCMFRVYLGGVEHRGQFHLVGHRASDGSLIYTNAVLIDQLIN
>NZ_CP048833.1|WP_169941478.1|5794115_5795786_+|diguanylate-cyclase
MRTSSKPGVKEHGRYDGLLRLARHAGGDCAVLLIDMHGQLLGHLGIESAVALSLTTLLSLDAATTPLHQQGRELHLLSSEILRDEEGFPRARLLLLGNGDRPLSQDQQRLLADVLELGEALLERARAPQRESERRMALAVDGSGTGIWDRHVTTGQIHYSSAWKSLLGYADAEIGSCIEDAYTRIHPVDLDYVQSAMRDHFEGRTESYEVEHRLRHKDGHYLWVCSRGKVVERDAAGNALRMLGTTTDITALREVAEQLRESVQLLTDLTNEIPGMVFQFCRLPDGTGTFPYVSAGVLDIYGVLPEEVRGDSSFLRQVIHPEDLDACLASLENSALQMQPWRHEYRVMIPERGVFWRQGNAHPKRMEDGSLIWHGFITDITERKRIEAELQLLATTDYLTQLPNRGHFMHLIEAELGRVQRSVERSAAILMCDIDHFKAINDRWGHAVGDEALRHFAGILARAIRRVDFAGRMGGEEFAVVLGDADLGSAEVFAQRLQQQLADQPLMHAGQRIPLTISIGVAVLEAGDSSAEAALSRSDSALYRAKQNGRNRVECH
>NZ_CP048833.1|WP_169941480.1|5796169_5796973_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSNSNIGNKKQTLRKPVVLMSMGSQERKGHDYQVMTHKYIVPLVEQSDCVPVLVPTCCGIEDLEQYLDMADGVYLTGAGSNIDPTLYGQENETPGKGQDKDRDNFDIPLIKAAIARGLPIFGICRGMQEINVALGGDIYQKVYAEPGFNDHRENPDDPVDVQYSPAHGVRPKAGSWLQQLLGDEIRVNSLHGQGLKNLGKGIEAIAHAEDGLVEAIHAPTLSSFLFAVQWHPEWQAAKNPDSVKIFQAFGDACRQQVKKKQARQLAA
>NZ_CP048833.1|WP_169941482.1|5797259_5798033_+|SDR-family-oxidoreductase
MSNDLFSLAGKTVLVTGASSGIGAHLARVAAQAGARVVLAARRTERLAQLAQAIQAEGGEAHAVALDVTDRASVEAAFNSAEAQFGVVDVVLNNAGIGNGQRALEVSEEDWRAMLSTNLDGVWRVAQCAAQRLAKAGRGGSIVNIASILGLRVGGGYSHYCAAKAGVVQLSKSLALELARFNVRVNAIAPGYFKTEMNDAYFDSDKGQAYIRDTVPMRRLGQLQELEGPFLLLASDAGAFMTGAVLAVDGGHLVSSL
>NZ_CP048833.1|WP_169941483.1|5798029_5799226_-|chromate-efflux-transporter
MTEPTPRDSLWTVLLIFLRLGLTSFGGPVAHLGYFREEFVRRRRWLDEHHYADLIALCQFLPGPASSQLGMALGALRAGQWGALVAWVGFTLPSALLMILVALGLSRHGQWLPAGALHGLMLVSVAVVAHAVWGMARSLCPDWQRQGLMILVTAVALRWPGVAVQLLAILGAALIGMAWLQPSVASEAVGPGHSTPRCRGSFYLLLFFALLALLPLAAAVWHLPWLAQFDAFYRVGSLVFGGGHVVLPLLQSAVVEPGWVDAQTFLAGYAAAQALPGPLFTFAAFLGAANAEPGGVAGALLCLLAIFLPSFLLVLGALPFWESLRRQRRLRAALAGVNTAVVGLLLAALIHPIGSETIVGLLDIGLVALAFLVLLSGRLPPWTLVLLGALGGGLASSF
>NZ_CP048833.1|WP_169941485.1|5799284_5800538_-|RNA-polymerase-sigma-factor
MHEYAPQPLRDVVDDIYRRESRRVLATLIRLLGDFDLAEEALHEAFVAAVDQWRRDGVPANPRAWLVSAGRFKAIDGLRRRSRFDASLVQIAEQLEIDTQSVEEQADESVEDDRLRLIFTCCHPALPADSQVPLTLREVCDLKTEEIARAYLATPSTIAQRIVRAKAKIRDAQIPYQVPEAAELPERLASVLRVIYLVFNEGYSASAGDSLTRTDLSAEAIRLGRQLLELLPEAEVMGLLALMLLHESRREARTAEDGEMVLLENQDRSRWNRAQIDEGQQLITAALATRRIGPYTLQAAISAVHAAAADMASTDWAEIVGLYDLLLAMQPSPVIELNRAVALAMRDGPEAGLAQVDAILARGELQDYHLAHAARADFCRRLERHGQAREAYERALALTKLEPERRFLEQRIRELGK
>NZ_CP048833.1|WP_169941487.1|5800771_5801212_-|nuclear-transport-factor-2-family-protein
MTAAEKNAAQAELHALLESWLKAVRASDVEGITRHYTRDILAFDAVKQLQFQGVEAYASHWRDCTQMCKEPIFEIHQLSFEIGGETAFGHYLAYCGGTDDKGQHNASWARVSVGLRREAGQWKIAHEHFSIPFDPATGQLLFDAKP
>NZ_CP048833.1|WP_169941489.1|5801233_5802016_-|DUF899-domain-containing-protein
MKLANQDFPRVVSQAAWRQARIRLLEQEKAATHARDALNAQRRELPVVRIDKDYRFEGPHGPLRLLDLFEGRPQLIVYHFMFHRDTGLGCEGCSYLIDNLGRLEHLHARGTTFAMVSRAPLEEIAPFRARMGWQFPWYSSFGCDFNYDFHVSVDESVAPVEYNYRDKAELESLGQDYHVRGEQPGMSVFLRDGEQIFHSYSTYGRGLEAPLFTYHLLDLTPLGRGEGWGGMPDYQGKGMNWTRFHDEYDEAPQPHSCCGS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048833_1	1.2\|5790464\|22\|NZ_CP048833\|CRISPRCasFinder	5790464-5790485	22	NC_022235	Sphingomonas sp. ERG5 plasmid pCADAB1, complete sequence	64449-64470	3	0.864

1. spacer 1.2|5790464|22|NZ_CP048833|CRISPRCasFinder matches to NC_022235 (Sphingomonas sp. ERG5 plasmid pCADAB1, complete sequence) position: , mismatch: 3, identity: 0.864

ttcagtctggctggccttggtt	CRISPR spacer
ttcagtctggctggccttgaca	Protospacer
*******************..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

62888 : 86843

Lactococcus_phage(20.0%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169934947.1\|62888_63425_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_169934948.1\|63559_64459_+	acyltransferase	NA	NA	NA	NA
WP_169934949.1\|64465_65020_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_169934950.1\|65117_65660_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_169934951.1\|65948_67385_+	multidrug transporter subunit MdtD	NA	NA	NA	NA
WP_169934952.1\|67385_67898_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_169934953.1\|68009_68219_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	2.8e-16	58.1
WP_169934954.1\|68542_69919_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	7.6e-49	31.8
WP_169934955.1\|70128_72324_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_169934956.1\|72443_73178_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_169934957.1\|73242_74016_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_169934958.1\|74196_75465_-	malate dehydrogenase	NA	NA	NA	NA
WP_169934959.1\|75568_77020_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_169934960.1\|77016_77769_-	thermonuclease family protein	A0A2P1JU10	Anoxybacillus_phage	1.9e-06	32.6
WP_024766509.1\|77845_78061_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_169934961.1\|78236_80498_+	primosomal protein N'	NA	NA	NA	NA
WP_169934962.1\|80703_82443_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.8e-87	35.1
WP_169934963.1\|82449_83262_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_037013407.1\|83396_83933_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_084358347.1\|83962_85303_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	1.3e-45	29.3
WP_169934964.1\|85396_85768_+	DUF971 domain-containing protein	NA	NA	NA	NA
WP_169934965.1\|85901_86843_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

607984 : 672318

Bacillus_virus(30.0%)

protease,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169935327.1\|607984_609352_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_169935328.1\|609898_611791_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_169935329.1\|611790_612441_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_024765005.1\|612459_613248_+	ParA family protein	Q8JL10	Natrialba_phage	5.9e-22	30.4
WP_169935330.1\|613265_614138_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.5e-13	32.7
WP_169935331.1\|614288_614696_+	F0F1 ATP synthase subunit I	NA	NA	NA	NA
WP_169935332.1\|614712_615582_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_003457994.1\|615692_615950_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_017518842.1\|616002_616473_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_045213782.1\|616485_617022_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_017518840.1\|617040_618585_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_017518839.1\|618637_619498_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_045213787.1\|619528_620905_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_017518837.1\|620945_621371_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_169935333.1\|621482_622850_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L277	Tupanvirus	8.7e-29	33.9
WP_017518835.1\|622968_623556_+	membrane protein	NA	NA	NA	NA
WP_169935334.1\|623578_624361_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_169935335.1\|624357_626151_-	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	1.3e-19	30.5
WP_169935336.1\|626147_627494_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_169935337.1\|627721_628576_+	BON domain-containing protein	NA	NA	NA	NA
WP_054907597.1\|628608_629043_+	PA2169 family four-helix-bundle protein	NA	NA	NA	NA
WP_169935338.1\|629321_629639_+	hypothetical protein	NA	NA	NA	NA
WP_017518828.1\|629813_629975_+	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_054907599.1\|630015_630486_+	hypothetical protein	NA	NA	NA	NA
WP_169935339.1\|630675_631335_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_169935340.1\|632000_633350_+	glutamate/aspartate:proton symporter GltP	NA	NA	NA	NA
WP_169935341.1\|633458_634688_+	spore maturation protein	NA	NA	NA	NA
WP_169942494.1\|634669_635245_-\|protease	serine protease	NA	NA	NA	NA
WP_169935342.1\|635751_637041_+	MFS transporter	Q6JIH2	Burkholderia_virus	7.8e-72	37.5
WP_054907604.1\|637165_637717_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_169935343.1\|637740_639114_-	insulinase family protein	NA	NA	NA	NA
WP_169935344.1\|639320_640277_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_169935345.1\|640347_641382_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_169935346.1\|641478_643203_-	Na/Pi cotransporter family protein	NA	NA	NA	NA
WP_169935347.1\|643558_644866_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_045213830.1\|644883_645357_+	LEA type 2 family protein	NA	NA	NA	NA
WP_169935348.1\|645443_646205_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	1.1e-36	44.0
WP_054907612.1\|646237_647542_-	CitMHS family transporter	NA	NA	NA	NA
WP_169935349.1\|647931_648894_-	AEC family transporter	NA	NA	NA	NA
WP_169935350.1\|648979_651385_-	carbohydrate-binding family V/XII	NA	NA	NA	NA
WP_169935351.1\|651703_652678_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024764976.1\|652735_653542_+	ABC transporter permease	G3M9Y4	Bacillus_virus	8.1e-27	33.6
WP_024764975.1\|653529_654363_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-32	36.5
WP_169935352.1\|654537_656166_+	alcohol dehydrogenase	A0A1V0S9J5	Catovirus	4.2e-46	27.6
WP_169935353.1\|656353_656824_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_169935354.1\|657032_658010_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_169935355.1\|658234_659173_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_169935356.1\|659246_660131_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_169935357.1\|660273_661239_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_169935358.1\|661339_661813_+	thioesterase family protein	NA	NA	NA	NA
WP_169935359.1\|661819_662749_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_024766693.1\|663015_663267_+	hypothetical protein	NA	NA	NA	NA
WP_169935360.1\|663291_664749_-	hypothetical protein	NA	NA	NA	NA
WP_024766695.1\|664908_666015_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_169935361.1\|666400_667777_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_169935362.1\|668125_669064_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_169935363.1\|669302_670241_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_169935364.1\|670294_671134_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_169935365.1\|671139_672318_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-25	36.6

DBSCAN-SWA_3

1704857 : 1718743

Pseudomonas_phage(77.78%)

capsid,integrase

attL 1697624:1697670|attR 1720205:1720251

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1697624:1697670	attL	NA	NA	NA	NA
WP_169942552.1\|1704857_1705190_+	DUF5447 family protein	Q56VP7	Pseudomonas_phage	1.1e-17	44.8
WP_169936587.1\|1705768_1706185_+	DNA-binding protein	Q56VP5	Pseudomonas_phage	1.1e-40	64.4
WP_169936589.1\|1706201_1706423_+	hypothetical protein	NA	NA	NA	NA
WP_169936591.1\|1706424_1706676_+	hypothetical protein	NA	NA	NA	NA
WP_169936593.1\|1706688_1706940_+\|capsid	major capsid protein	Q56VP2	Pseudomonas_phage	6.6e-28	81.9
WP_169936594.1\|1707086_1708397_+	attachment protein	Q56VP1	Pseudomonas_phage	1.3e-21	60.5
WP_084358758.1\|1708402_1708759_+	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	1.1e-49	83.9
WP_169936595.1\|1708762_1710052_+	hypothetical protein	Q56VN9	Pseudomonas_phage	2.9e-191	78.2
WP_169936596.1\|1710291_1711584_+	hypothetical protein	Q56VN8	Pseudomonas_phage	1.4e-209	78.0
WP_169936597.1\|1711580_1712573_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-77	46.9
WP_169936598.1\|1712731_1713115_-	DUF4279 domain-containing protein	NA	NA	NA	NA
WP_169936599.1\|1713551_1714145_-	sel1 repeat family protein	NA	NA	NA	NA
WP_169936600.1\|1714156_1718743_-	RHS repeat protein	S5VY91	Leptospira_phage	2.8e-07	32.6
1720205:1720251	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2258923 : 2268391

Pseudomonas_phage(87.5%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169942603.1\|2258923_2260081_+	DNA adenine methylase	A0A1P8BMM5	Lactococcus_phage	9.0e-19	24.6
WP_169937364.1\|2260077_2261262_-	hypothetical protein	NA	NA	NA	NA
WP_169937366.1\|2261354_2261627_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_169937368.1\|2261752_2261968_+	DNA-binding protein	Q56VP9	Pseudomonas_phage	2.4e-18	53.5
WP_169937370.1\|2262008_2262215_+	hypothetical protein	NA	NA	NA	NA
WP_169937373.1\|2262218_2262509_+	DUF5447 family protein	Q56VP7	Pseudomonas_phage	6.5e-35	70.0
WP_169937375.1\|2262512_2262719_+	hypothetical protein	NA	NA	NA	NA
WP_169937377.1\|2262943_2263243_+	hypothetical protein	NA	NA	NA	NA
WP_169937379.1\|2263243_2263495_+	hypothetical protein	NA	NA	NA	NA
WP_169937381.1\|2263507_2263759_+\|capsid	major capsid protein	Q56VP2	Pseudomonas_phage	1.9e-27	80.7
WP_169937383.1\|2263905_2265225_+	attachment protein	Q56VP1	Pseudomonas_phage	2.5e-17	45.6
WP_084358758.1\|2265230_2265587_+	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	1.1e-49	83.9
WP_169937385.1\|2265590_2266877_+	hypothetical protein	Q56VN9	Pseudomonas_phage	7.0e-190	79.9
WP_169937387.1\|2267116_2268391_+	hypothetical protein	Q56VN8	Pseudomonas_phage	4.0e-113	49.3

DBSCAN-SWA_5

2338923 : 2348697

Pseudomonas_phage(33.33%)

tail,integrase

attL 2333485:2333500|attR 2344552:2344567

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2333485:2333500	attL	NA	NA	NA	NA
WP_169937512.1\|2338923_2340693_-	N-acetylglutaminylglutamine amidotransferase	A0A0G2Y369	Acanthamoeba_polyphaga_mimivirus	5.0e-29	26.3
WP_169937514.1\|2340722_2341907_-\|integrase	tyrosine-type recombinase/integrase	J7HXC4	Pseudomonas_phage	2.5e-109	52.9
WP_169937517.1\|2342133_2342622_-	adenine methyltransferase	M4QBY4	Dunaliella_viridis_virus	2.4e-29	46.4
WP_169937519.1\|2342618_2343092_-	hypothetical protein	A0A0U2QW67	Escherichia_phage	4.5e-09	45.3
WP_169937521.1\|2343088_2343292_-	winged helix-turn-helix transcriptional regulator	A0A127KNH7	Pseudomonas_phage	2.3e-31	95.5
WP_169937523.1\|2343294_2343570_-	hypothetical protein	H2BDE3	Pseudomonas_virus	2.8e-27	69.1
WP_169937525.1\|2344318_2345599_-	hypothetical protein	NA	NA	NA	NA
2344552:2344567	attR	NA	NA	NA	NA
WP_169937527.1\|2345595_2345892_-\|tail	phage tail assembly protein	K4I007	Acidithiobacillus_phage	7.1e-05	38.2
WP_169937529.1\|2345888_2346116_-	hypothetical protein	NA	NA	NA	NA
WP_169937531.1\|2346112_2346292_-	hypothetical protein	NA	NA	NA	NA
WP_169937534.1\|2346272_2346758_-	hypothetical protein	NA	NA	NA	NA
WP_169937536.1\|2346819_2347170_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_169937538.1\|2347166_2347793_-	YqaJ viral recombinase family protein	A0A0H5ARG7	Pseudomonas_phage	5.6e-84	74.3
WP_169937541.1\|2347776_2348697_-	recombinase RecT	H9C0R8	Aeromonas_phage	2.2e-68	60.5

DBSCAN-SWA_6

2355117 : 2385610

Pseudomonas_phage(40.0%)

terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169937568.1\|2355117_2355900_-	helix-turn-helix transcriptional regulator	A0A2H4J6Q0	uncultured_Caudovirales_phage	9.6e-65	50.4
WP_169942611.1\|2356009_2356210_+	hypothetical protein	A0A2H4J1L8	uncultured_Caudovirales_phage	3.4e-19	74.2
WP_169937570.1\|2356466_2357060_+	hypothetical protein	NA	NA	NA	NA
WP_169937572.1\|2357126_2357978_+	replication protein	W6MYB0	Pseudomonas_phage	8.6e-43	41.8
WP_169937574.1\|2357967_2358765_+	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	7.9e-75	53.8
WP_169937577.1\|2358761_2358989_+	hypothetical protein	NA	NA	NA	NA
WP_169937579.1\|2359102_2359303_+	TraR/DksA C4-type zinc finger protein	H2BDI2	Pseudomonas_virus	8.4e-18	60.6
WP_169937581.1\|2359295_2359697_+	recombination protein NinB	A0A059VG13	Pseudomonas_phage	4.9e-33	53.6
WP_169937583.1\|2359693_2360092_+	hypothetical protein	A0A248SKX0	Klebsiella_phage	4.9e-25	45.6
WP_169937585.1\|2360088_2360397_+	hypothetical protein	K7P7Q1	Enterobacteria_phage	1.4e-24	58.9
WP_169937587.1\|2360393_2360717_+	hypothetical protein	NA	NA	NA	NA
WP_169937589.1\|2360713_2360983_+	hypothetical protein	NA	NA	NA	NA
WP_169937591.1\|2360979_2361186_+	hypothetical protein	NA	NA	NA	NA
WP_169937593.1\|2361182_2361647_+	hypothetical protein	Q858D2	Salmonella_phage	6.7e-58	74.7
WP_169937595.1\|2361643_2361937_+	hypothetical protein	V5R6Z6	Pseudomonas_phage	9.8e-31	72.0
WP_169942613.1\|2361894_2362419_+	hypothetical protein	A0A291LAS9	Bordetella_phage	2.7e-55	71.9
WP_169937597.1\|2362418_2363555_+	oxidoreductase	A0A220IHC1	Escherichia_phage	2.8e-81	42.7
WP_169937599.1\|2363551_2364121_+	hypothetical protein	H2BDI9	Pseudomonas_virus	2.3e-28	36.5
WP_169937601.1\|2364484_2364661_+	hypothetical protein	NA	NA	NA	NA
WP_169937603.1\|2364846_2365248_+	hypothetical protein	B5WZY9	Pseudomonas_phage	5.4e-40	65.6
WP_169937605.1\|2365244_2365406_+	hypothetical protein	NA	NA	NA	NA
WP_169937607.1\|2365405_2365606_+	hypothetical protein	NA	NA	NA	NA
WP_169937609.1\|2365618_2366242_+	hypothetical protein	A0A125RNL5	Pseudomonas_phage	8.6e-93	75.4
WP_169937612.1\|2366273_2366735_+	DUF2280 domain-containing protein	A0A0S2SY97	Pseudomonas_phage	9.6e-49	76.6
WP_169937614.1\|2366721_2368017_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.4e-140	58.1
WP_169937616.1\|2368021_2369416_+	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	3.3e-140	58.0
WP_169937618.1\|2369402_2370491_+\|capsid	minor capsid protein	A0A0H5BBX3	Pseudomonas_phage	1.5e-84	46.1
WP_169937620.1\|2370500_2370749_+	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	8.0e-18	54.2
WP_169937622.1\|2370745_2371009_+	hypothetical protein	NA	NA	NA	NA
WP_169937624.1\|2371123_2371882_+	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	1.2e-27	36.2
WP_169937626.1\|2371901_2372894_+	hypothetical protein	A0A0P1KKM6	Acinetobacter_phage	4.8e-37	34.1
WP_169937628.1\|2372938_2373886_+	hypothetical protein	NA	NA	NA	NA
WP_169937630.1\|2373888_2374386_+	hypothetical protein	A0A2H4J970	uncultured_Caudovirales_phage	1.8e-32	50.0
WP_169937633.1\|2374382_2374763_+	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	1.4e-21	45.7
WP_169937635.1\|2374762_2375158_+	HK97 gp10 family phage protein	A0A0H5AWD5	Pseudomonas_phage	3.0e-35	56.5
WP_169937637.1\|2375161_2375581_+	hypothetical protein	A0A2L0V141	Salmonella_phage	2.3e-17	43.2
WP_169937639.1\|2375584_2376730_+	hypothetical protein	A0A0A0RP46	Escherichia_phage	6.5e-38	34.1
WP_169937640.1\|2377014_2377419_+	hypothetical protein	A0A1B0Z0C9	Vibrio_phage	1.6e-18	38.5
WP_169937642.1\|2377698_2380161_+	tape measure protein	J7HXG0	Pseudomonas_phage	2.7e-89	51.8
WP_169937644.1\|2380160_2381027_+	DUF2460 domain-containing protein	NA	NA	NA	NA
WP_169937646.1\|2381082_2381970_+	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_169937648.1\|2381966_2382395_+	C40 family peptidase	NA	NA	NA	NA
WP_169937651.1\|2382391_2385610_+	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	8.0e-49	28.8

DBSCAN-SWA_7

3202621 : 3205783

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169938633.1\|3202621_3203620_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	7.5e-139	72.2
WP_169938635.1\|3203616_3203952_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.1e-41	75.7
WP_169938636.1\|3203948_3204251_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.1e-24	57.0
WP_169938638.1\|3204250_3204610_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	7.5e-33	58.3
WP_169938640.1\|3204609_3205002_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.2e-49	73.6
WP_024765156.1\|3205117_3205783_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	6.8e-88	80.7

DBSCAN-SWA_8

4878292 : 4917267

Pseudomonas_phage(25.71%)

terminase,tail,holin,tRNA,protease,integrase

attL 4889877:4889893|attR 4917612:4917628

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169940253.1\|4878292_4880428_-	hypothetical protein	G8GWG3	Rhodobacter_phage	6.5e-31	38.9
WP_169940255.1\|4880424_4881030_-	hypothetical protein	D6PEY1	uncultured_phage	2.6e-17	32.3
WP_169940257.1\|4881026_4881320_-	hypothetical protein	NA	NA	NA	NA
WP_169940258.1\|4881319_4881634_-	hypothetical protein	NA	NA	NA	NA
WP_169940261.1\|4881674_4882097_-	hypothetical protein	NA	NA	NA	NA
WP_169940263.1\|4882155_4883079_-	DUF5309 domain-containing protein	A0A0F7L5B1	uncultured_marine_virus	3.6e-79	52.1
WP_169942752.1\|4883094_4883826_-	hypothetical protein	A0A218MLX4	uncultured_virus	2.5e-19	42.1
WP_169940264.1\|4884135_4884426_-	hypothetical protein	A0A1B1ITG5	uncultured_Mediterranean_phage	5.5e-10	41.6
WP_169940265.1\|4884412_4886683_-	hypothetical protein	A0A218MLX1	uncultured_virus	5.3e-116	39.3
WP_169940266.1\|4886690_4887950_-\|terminase	PBSX family phage terminase large subunit	L7TP33	Pseudomonas_virus	2.3e-116	52.3
WP_169940267.1\|4887946_4888405_-	DNA packaging protein	F8TUR4	EBPR_podovirus	9.9e-30	51.1
WP_169942754.1\|4888562_4888763_-\|holin	holin	NA	NA	NA	NA
WP_169940268.1\|4888965_4889337_-	antitermination protein Q	W6MVN8	Pseudomonas_phage	1.4e-42	69.9
WP_169940269.1\|4889333_4890467_-	oxidoreductase	A0A1P8L636	Pectobacterium_phage	9.9e-79	40.8
4889877:4889893	attL	NA	NA	NA	NA
WP_169940270.1\|4890466_4890643_-	hypothetical protein	NA	NA	NA	NA
WP_169940271.1\|4890642_4891026_-	hypothetical protein	NA	NA	NA	NA
WP_169940273.1\|4891225_4891441_-	hypothetical protein	NA	NA	NA	NA
WP_169940275.1\|4891437_4891671_-	hypothetical protein	C8XUE3	Shigella_phage	1.1e-08	43.4
WP_169940277.1\|4891667_4891907_-	hypothetical protein	NA	NA	NA	NA
WP_169937587.1\|4891903_4892227_-	hypothetical protein	NA	NA	NA	NA
WP_169937585.1\|4892223_4892532_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	1.4e-24	58.9
WP_169937583.1\|4892528_4892927_-	hypothetical protein	A0A248SKX0	Klebsiella_phage	4.9e-25	45.6
WP_169937581.1\|4892923_4893325_-	recombination protein NinB	A0A059VG13	Pseudomonas_phage	4.9e-33	53.6
WP_169937579.1\|4893317_4893518_-	TraR/DksA C4-type zinc finger protein	H2BDI2	Pseudomonas_virus	8.4e-18	60.6
WP_169940279.1\|4893631_4893859_-	hypothetical protein	NA	NA	NA	NA
WP_169940281.1\|4893855_4894662_-	ATP-binding protein	A0A059VK34	Pseudomonas_phage	1.9e-71	52.5
WP_169940283.1\|4894651_4895452_-	phage replication protein	A0A2H4J580	uncultured_Caudovirales_phage	3.7e-64	50.9
WP_169940285.1\|4895742_4895931_-	hypothetical protein	B5WZX7	Pseudomonas_phage	2.8e-15	66.1
WP_169940287.1\|4895943_4896141_-	hypothetical protein	A0A1B0Z2M2	Pseudomonas_phage	9.5e-14	63.1
WP_169940289.1\|4896214_4896907_+	helix-turn-helix domain-containing protein	A0A2H4J6J6	uncultured_Caudovirales_phage	2.1e-39	55.6
WP_169940291.1\|4896933_4897440_+	hypothetical protein	NA	NA	NA	NA
WP_169937560.1\|4897806_4898313_+	HNH endonuclease	A0A1W6DY33	Salmonella_phage	1.8e-27	42.8
WP_169937558.1\|4898344_4898515_+	hypothetical protein	NA	NA	NA	NA
WP_169934896.1\|4898526_4898796_+	hypothetical protein	NA	NA	NA	NA
WP_169937556.1\|4898829_4899072_+	hypothetical protein	NA	NA	NA	NA
WP_169937554.1\|4899330_4899555_+	hypothetical protein	A0A0U4JX53	Pseudomonas_phage	1.3e-35	94.5
WP_169937552.1\|4899551_4899944_+	hypothetical protein	NA	NA	NA	NA
WP_169937550.1\|4899940_4900279_+	hypothetical protein	NA	NA	NA	NA
WP_169937548.1\|4900603_4900828_+	hypothetical protein	NA	NA	NA	NA
WP_169937546.1\|4900824_4900968_+	hypothetical protein	NA	NA	NA	NA
WP_169937543.1\|4901133_4901544_+	hypothetical protein	NA	NA	NA	NA
WP_169937541.1\|4901595_4902516_+	recombinase RecT	H9C0R8	Aeromonas_phage	2.2e-68	60.5
WP_169937538.1\|4902499_4903126_+	YqaJ viral recombinase family protein	A0A0H5ARG7	Pseudomonas_phage	5.6e-84	74.3
WP_169937536.1\|4903122_4903473_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_169937534.1\|4903534_4904020_+	hypothetical protein	NA	NA	NA	NA
WP_169937531.1\|4904000_4904180_+	hypothetical protein	NA	NA	NA	NA
WP_169937529.1\|4904176_4904404_+	hypothetical protein	NA	NA	NA	NA
WP_169937527.1\|4904400_4904697_+\|tail	phage tail assembly protein	K4I007	Acidithiobacillus_phage	7.1e-05	38.2
WP_169937525.1\|4904693_4905974_+	hypothetical protein	NA	NA	NA	NA
WP_169937523.1\|4906722_4906998_+	hypothetical protein	H2BDE3	Pseudomonas_virus	2.8e-27	69.1
WP_169937521.1\|4907000_4907204_+	winged helix-turn-helix transcriptional regulator	A0A127KNH7	Pseudomonas_phage	2.3e-31	95.5
WP_169937519.1\|4907200_4907674_+	hypothetical protein	A0A0U2QW67	Escherichia_phage	4.5e-09	45.3
WP_169937517.1\|4907670_4908159_+	adenine methyltransferase	M4QBY4	Dunaliella_viridis_virus	2.4e-29	46.4
WP_169940293.1\|4908206_4908455_+	hypothetical protein	NA	NA	NA	NA
WP_169940295.1\|4908567_4908888_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_169940297.1\|4908773_4909871_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	1.4e-151	71.5
WP_169940299.1\|4910464_4911319_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.5e-28	33.2
WP_169940301.1\|4911382_4912771_-\|tRNA	cysteine--tRNA ligase	A0A2L2DK39	Acanthamoeba_polyphaga_mimivirus	5.1e-45	35.7
WP_169942756.1\|4912774_4914457_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	1.7e-199	61.1
WP_024765728.1\|4914578_4915085_+	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	1.2e-15	36.0
WP_169940303.1\|4915089_4915812_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_169940305.1\|4915935_4917267_+\|protease	membrane protease subunit, stomatin/prohibitin	A0A0F6WCV7	Sinorhizobium_phage	1.8e-39	28.4
4917612:4917628	attR	NA	NA	NA	NA

DBSCAN-SWA_9

6448934 : 6482882

Pseudomonas_phage(27.27%)

plate,holin,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169942872.1\|6448934_6450134_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_169942343.1\|6450316_6451762_+	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	4.7e-17	43.1
WP_169942345.1\|6451765_6452857_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_045212604.1\|6452914_6453265_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	5.1e-26	50.5
WP_169942347.1\|6453400_6454435_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_065085717.1\|6454695_6455121_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_024763559.1\|6455140_6456109_+	nitronate monooxygenase	NA	NA	NA	NA
WP_169942349.1\|6456214_6457312_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_169942351.1\|6457367_6458156_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_169942353.1\|6458162_6459644_-	AAA family ATPase	U5XGM6	Phormidium_phage	3.2e-69	35.5
WP_024763563.1\|6459737_6460076_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_024763564.1\|6460178_6460826_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_024763565.1\|6460883_6461678_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_015475289.1\|6461901_6462324_-	OsmC family protein	NA	NA	NA	NA
WP_024763566.1\|6462698_6463346_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_045212629.1\|6463490_6464327_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	6.2e-70	54.6
WP_169942355.1\|6464323_6465373_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.7e-113	57.8
WP_017517337.1\|6465369_6465966_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.1e-72	62.6
WP_169942357.1\|6466283_6466535_-	hypothetical protein	A0A0S2SYC6	Pseudomonas_phage	4.3e-11	52.4
WP_169942359.1\|6466531_6466888_-	hypothetical protein	A0A0S2SY58	Pseudomonas_phage	4.0e-10	42.1
WP_169942361.1\|6466884_6467514_-	glycoside hydrolase family 19 protein	J7I4M6	Pseudomonas_phage	1.4e-69	63.9
WP_169942363.1\|6467515_6468520_-	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.7e-104	58.2
WP_024763574.1\|6468584_6468794_-\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.7e-17	61.8
WP_169942365.1\|6468765_6469671_-\|tail	phage tail protein	NA	NA	NA	NA
WP_169942367.1\|6469680_6471636_-	hypothetical protein	NA	NA	NA	NA
WP_024763577.1\|6471791_6472133_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_024763578.1\|6472144_6472648_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.6e-59	67.3
WP_169942369.1\|6472660_6473821_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.9e-173	80.9
WP_169942371.1\|6473887_6474313_-\|tail	tail fiber assembly protein	A0A219Y8Y9	Aeromonas_phage	9.0e-17	38.9
WP_169942373.1\|6476933_6477467_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	3.8e-57	61.5
WP_169942375.1\|6477459_6478350_-\|plate	baseplate J/gp47 family protein	F1BUP3	Erwinia_phage	3.0e-91	61.3
WP_169942377.1\|6478346_6478673_-	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.3e-31	62.0
WP_169942379.1\|6478782_6479346_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	3.0e-44	58.6
WP_169942381.1\|6479342_6479873_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.5e-24	40.6
WP_169942383.1\|6479890_6480235_-\|holin	holin	B5TK61	Pseudomonas_phage	1.5e-25	51.8
WP_169942385.1\|6480551_6481025_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_169942387.1\|6481108_6481468_-	hypothetical protein	NA	NA	NA	NA
WP_024763589.1\|6481487_6481697_-	TraR/DksA C4-type zinc finger protein	Q9ZXI6	Pseudomonas_virus	1.7e-08	45.2
WP_169942389.1\|6482111_6482882_+	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.8e-68	56.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage