CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	11 crisprs	csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,cas3,WYL,RT	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052863_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_1

548324-548425

Orphan

Consensus_repeat	Method
GGTAGGTGCCGACCGTTGGTCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_1

>merge|NZ_CP052863|1|548324-548425|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCAGACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCTGGTGGGTGCCGACCGTTGGTCGGCA

>NZ_CP052863|1|1|548324-548425|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCA	GACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCT
GGTGGGTGCCGACCGTTGGTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_005407927.1\|546939_547641_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP052863.1\|WP_169448087.1\|547637_548321_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP052863.1\|WP_005412127.1\|539811_541116_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP052863.1\|WP_024957093.1\|554473_555265_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP052863.1\|WP_088436419.1\|556101_557943_-\|TonB-dependent-vitamin-B12-receptor	unknown	unknown	gnl\|CDD\|273802
NZ_CP052863.1\|WP_049395664.1\|545878_546943_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP052863.1\|WP_005412134.1\|549643_550159_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_CP052863.1\|WP_005407919.1\|539182_539662_-\|Lrp/AsnC-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|183009
NZ_CP052863.1\|WP_169448088.1\|553547_554477_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP052863.1\|WP_049449763.1\|550349_551420_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP052863.1\|WP_049448880.1\|551750_552662_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825
NZ_CP052863.1\|WP_049448882.1\|552800_553439_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP052863.1\|WP_005412128.1\|541094_542162_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP052863.1\|WP_049402686.1\|555330_555993_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP052863.1\|WP_005407925.1\|545458_545722_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_049448888.1\|558424_559003_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP052863.1\|WP_043033923.1\|542245_542809_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
NZ_CP052863.1\|WP_024957100.1\|545085_545376_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_CP052863.1\|WP_005407923.1\|543053_545042_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_CP052863.1\|WP_012479031.1\|548435_549644_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_005407927.1\|546939_547641_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.64966e-75
NZ_CP052863.1\|WP_169448087.1\|547637_548321_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	2.55307e-58
NZ_CP052863.1\|WP_005412127.1\|539811_541116_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP052863.1\|WP_024957093.1\|554473_555265_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.01969e-16
NZ_CP052863.1\|WP_088436419.1\|556101_557943_-\|TonB-dependent-vitamin-B12-receptor	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	0
NZ_CP052863.1\|WP_049395664.1\|545878_546943_+\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.6327e-66
NZ_CP052863.1\|WP_005412134.1\|549643_550159_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	1.4515e-119
NZ_CP052863.1\|WP_005407919.1\|539182_539662_-\|Lrp/AsnC-ligand-binding-domain-containing-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70
NZ_CP052863.1\|WP_169448088.1\|553547_554477_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.6844e-84
NZ_CP052863.1\|WP_049449763.1\|550349_551420_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP052863.1\|WP_049448880.1\|551750_552662_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.54834e-98
NZ_CP052863.1\|WP_049448882.1\|552800_553439_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	5.38952e-69
NZ_CP052863.1\|WP_005412128.1\|541094_542162_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP052863.1\|WP_049402686.1\|555330_555993_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	8.51749e-85
NZ_CP052863.1\|WP_024957100.1\|545085_545376_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	9.01894e-24
NZ_CP052863.1\|WP_043033923.1\|542245_542809_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	5.21528e-65
NZ_CP052863.1\|WP_012479031.1\|548435_549644_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP052863.1\|WP_005407923.1\|543053_545042_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.87629e-63
NZ_CP052863.1\|WP_049448888.1\|558424_559003_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	4.83476e-34

>NZ_CP052863.1|WP_169448087.1|547637_548321_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSEAADAFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAVAARCHDLYEARTQTGLPLRPGILELLQLLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>NZ_CP052863.1|WP_005407927.1|546939_547641_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_CP052863.1|WP_049395664.1|545878_546943_+|methyltransferase
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWSALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFLWQDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>NZ_CP052863.1|WP_005407925.1|545458_545722_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_CP052863.1|WP_024957100.1|545085_545376_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_CP052863.1|WP_005407923.1|543053_545042_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVHLQLPEQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_CP052863.1|WP_043033923.1|542245_542809_-|DUF3016-domain-containing-protein
MKRALVIALLAGALVVSGANAAARNVTGTDAPRALQANGPVSVKWEDPATFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRARDIRVMRDIYPPRITLQYTLKDADGRIVSEGDARLSDSGYLQGSGLLTNSDPLRYEKRLIDDWVKRQLASQATAAR
>NZ_CP052863.1|WP_005412128.1|541094_542162_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDTTLTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_CP052863.1|WP_005412127.1|539811_541116_+|D-amino-acid-dehydrogenase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>NZ_CP052863.1|WP_005407919.1|539182_539662_-|Lrp/AsnC-ligand-binding-domain-containing-protein
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_CP052863.1|WP_012479031.1|548435_549644_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>NZ_CP052863.1|WP_005412134.1|549643_550159_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEARLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_CP052863.1|WP_049449763.1|550349_551420_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIATCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALSLRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEH
>NZ_CP052863.1|WP_049448880.1|551750_552662_-|MBL-fold-metallo-hydrolase
MRTAALLLPLALAASFTSAPLLAAPATAAPAAATKSQLHLQTFHPGPQAMFSVSSVLIEGRRDAILVNAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQTQAGKLAYWGPKMGADVPSRIVVPQVLDGDALQLEGQRLPLIGLDGPTPDRTVLWVPSLRAIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQRLQALKPKVVVPGHYAPGAALDASALVFTADYIRAFDAETAKAKDSAALVKAMQARYPKLAGVASLELSAKVAKGEMHWP
>NZ_CP052863.1|WP_049448882.1|552800_553439_-|NAD(P)H-binding-protein
MKIALVGSTGNIGRQIARHALAHGHELTVIVRNAQDLPAELDGAHPVVAPLDDQDALVAAIAGHDVLASAYGPRPGDDIGRVGDVAAQLAAAVRKAGVPRLVVVGGAGSLEVAPGVQLVDTPTFPEAYKPYALAHREAFNRLQAADDLDWTFFSPAAEIGPGEERGQYRVQPKAFLADASGHSRISYADYGAAFVAELEAHQYPKQIITAAY
>NZ_CP052863.1|WP_169448088.1|553547_554477_+|LysR-family-transcriptional-regulator
MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEAWLGARLLHRTTRRVSLTGPGEAALARFRQMLAIGEELQGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPAARIELLLVDRMVNLVEERVDLAVRIARQIDPSLIARRLATCRSVLCATPSYLQARGTPTAPEHLGGHNCLTHHYVGKSLWQLHRDGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFLAECFASPAFQDLDWRPPGKENT
>NZ_CP052863.1|WP_024957093.1|554473_555265_+|class-I-SAM-dependent-methyltransferase
MNHGQALIDHNRAAWDRQASEVREWSRPVESSTVAAAREGRWQVHLTPRALPLDWLGDVRGRRVLCLASGGGQQAPVLAAAGADVTVFDLSDGQLEQDRSVAARDGLRLRTVQGDMRDLHAFANDSFDVVFHPISNLYVPDVRPVWTECRRVLARDGMLMASFYNPVLFVGARDPQLDAQGLIRPQYAIPYSDLEDLPPAEREAKLARGDALTFGHSLTELIGGQLDAGFVIDRFMEDWQPQPRFLIDRYLPTFLATRARRIG
>NZ_CP052863.1|WP_049402686.1|555330_555993_+|phosphoglycolate-phosphatase
MSYPYPLVVFDLDGTLVDSAADIAEALNRTLEDIGLARVPEATVLGWIGDGVRRLVEQAVQAAGSEVDLAEVMPVFMVHYRECLLRSPRLFDGVGEALAQLRARNVPLAICTNKPEALVPPLLQHLGIGDAFALVLGGDSLPQRKPSGEPLRHIAAHFGLPVESCLMVGDSLTDYRAAEEAGMPIALVRYGYPRGLDLATAHAVAVIDDLRELPGLAAGR
>NZ_CP052863.1|WP_088436419.1|556101_557943_-|TonB-dependent-vitamin-B12-receptor
MKLQSRMLSLAVLAALPALAQAANDTTALDQILVTATRTPIALQDSIAPAQVIDRAQIESSQATSLQELLRGRAGINLTNAGGLGKQSSLFLRGTNSGHTVVLVDGVRINSADLGLAMYQDLPLAQIERVEIVRGPQSSLYGADAIGGVIQIFTRRNQGDFAPHFQLGGGSNGLREASGGIGGGTERGWFGADIAYQHSDGIDACRGSATLFTGCFADEPDRDGYRNLSKSLRGGYTFNDQWNVEGSALRADGKNHYDGYYNYSETRQQVLAGKVRYTPSERLAFTANVGRSDNESDNFGDFGARGSAQTHRDSASLQGDFGVAEGQLLSAGVDWSEDNLDGSSAGYLVDSRRNTGVFVQYQGRFGRHQLQASARNDDNQQFGNHATGSVGWAMELGHGLRLNASYGTAFKAPTFSDLYDPWSGVPTLKPEKSKSANLGVSQQGQGWHWGLDVYETRIDDLITYDAATFKMQQVEKARIRGAELTGGVLLAGFDINAQLSYTDPRNRTGGSTQFDNWLPRRAQQTARLDIDRRFGDFRAGLTVQGAGKRYDDAVNAVKVGGYGTLDLRAEYALTPSWSLLARAANVFDRRYETVAWFNQPGREYQLSVRYQPK
>NZ_CP052863.1|WP_049448888.1|558424_559003_+|histidine-phosphatase-family-protein
MILDLVRHAGNGRDEFLDGRSDPPQLARLPQELVEAYAGQRWERVISSPRLRSLHTAMALATPRGLDVEADEEWEELDFGDWDGRSLFDLPEDALAAFHADPHAFPPPNGESWGHFERRIARALDRLLDDDDPVPTLVVSHGGPLRMVLSQVCGLPMSLCWALRIDHGTRLRVWLERGEIGLVGELLELQQP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP052863_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_2

714751-714858

Orphan

Consensus_repeat	Method
TTGCTCTGGTAGGTGCCAACCTTGGTTGGCACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_2

>merge|NZ_CP052863|2|714751-714858|CRISPRCasFinder
TTGCTCTGGTAGGTGCCAACCTTGGTTGGCACGAATGTGTCAGCCGCGCGCGCCCAAACGGTCGCGCAGGCACCATTGCTCTGGTAGGTGCCAACCTTGGTTGGCACG

>NZ_CP052863|2|2|714751-714858|CRISPRCasFinder
TTGCTCTGGTAGGTGCCAACCTTGGTTGGCACG	AATGTGTCAGCCGCGCGCGCCCAAACGGTCGCGCAGGCACCA
TTGCTCTGGTAGGTGCCAACCTTGGTTGGCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_049451400.1\|716611_717127_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP052863.1\|WP_108270236.1\|714935_715346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_169448120.1\|724776_727692_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|237940
NZ_CP052863.1\|WP_169449084.1\|720718_721687_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP052863.1\|WP_099605830.1\|720118_720628_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185196
NZ_CP052863.1\|WP_138496782.1\|705937_706651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_164221741.1\|710671_711298_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP052863.1\|WP_169449086.1\|723629_723920_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP052863.1\|WP_164221745.1\|706725_707199_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_169448117.1\|709639_710260_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP052863.1\|WP_088436087.1\|708601_709486_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_088436081.1\|724005_724596_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_169449085.1\|721854_722814_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP052863.1\|WP_169449083.1\|717545_720080_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP052863.1\|WP_049451438.1\|715833_716556_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP052863.1\|WP_169448118.1\|711294_712395_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|237587
NZ_CP052863.1\|WP_164221763.1\|707473_708553_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163587
NZ_CP052863.1\|WP_058980441.1\|712588_713056_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP052863.1\|WP_169448119.1\|713732_714695_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP052863.1\|WP_005408062.1\|713052_713532_+\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_049451400.1\|716611_717127_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.6152e-18
NZ_CP052863.1\|WP_169448120.1\|724776_727692_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	5.60117e-74
NZ_CP052863.1\|WP_169449084.1\|720718_721687_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	4.29599e-05
NZ_CP052863.1\|WP_099605830.1\|720118_720628_+\|fimbrial-protein	gnl\|CDD\|185196	PRK15296, PRK15296, fimbrial protein SthA.	6.56394e-07
NZ_CP052863.1\|WP_049451438.1\|715833_716556_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	1.98218e-61
NZ_CP052863.1\|WP_169449086.1\|723629_723920_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	0.00651443
NZ_CP052863.1\|WP_164221741.1\|710671_711298_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	7.90281e-107
NZ_CP052863.1\|WP_169448117.1\|709639_710260_-\|hypothetical-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	3.98522e-18
NZ_CP052863.1\|WP_169448118.1\|711294_712395_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	1.92892e-179
NZ_CP052863.1\|WP_169449085.1\|721854_722814_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	3.70671e-06
NZ_CP052863.1\|WP_169449083.1\|717545_720080_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP052863.1\|WP_164221763.1\|707473_708553_+\|hypothetical-protein	gnl\|CDD\|163587	TIGR03875, RNA_lig_partner, RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.	0.00202421
NZ_CP052863.1\|WP_058980441.1\|712588_713056_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.19378e-67
NZ_CP052863.1\|WP_169448119.1\|713732_714695_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	3.36301e-136
NZ_CP052863.1\|WP_005408062.1\|713052_713532_+\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	1.82996e-58

>NZ_CP052863.1|WP_169448119.1|713732_714695_+|thiamine-phosphate-kinase
MSLAEFALIDRIRARTLERDDILLGIGDDAALLQPRANEQLVVTADTLNSGVHFPMETPAFDIGWKTLAVNLSDLAAMGARPAWCTLALSLPEASEDWIDAFADGFFALADQHDIALIGGDTTRGPLSLSVTAMGQVGRGQALRRDRAQVGDDLWVSGTLGDAAGALRLWQQGALSVTTATLLADYESLRLRLLRPTPRVTLGLRLRAFAHAAVDVSDGLLADLGHIATRSNVAAHVDADSLPISHALRELLGRDGARDCALRGGDDYELCFTAAADQRDALHYLAETLDVPLTRIGRIAEGQGVHVDGEAADGGYQHFA
>NZ_CP052863.1|WP_005408062.1|713052_713532_+|transcription-antitermination-factor-NusB
MNKNTQGKPSGKPVRRDGVDPVLRSRARRRAVQAIYAWQISGGNAQSLIAQFAHEQAREIADLAYFEALLHGVLDNRRDIDEALGPYLDRGIEEVDAIERAVLRLAAYELRYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVEWRKVESGH
>NZ_CP052863.1|WP_058980441.1|712588_713056_+|6,7-dimethyl-8-ribityllumazine-synthase
MSHFEGDLRTPESARFAILASRWNARITDALVAGARQSLAGNGITEANIDVIRVPGAWELPLVAARLAAAHEHAAILTLGCVIRGDTRHYEHVADRCAEGLMRVQLDFGVPVLNGVLAVERVEDAEARAGGSHGNKGEEVALAALEMVNLLEQLP
>NZ_CP052863.1|WP_169448118.1|711294_712395_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MNFAPIPDILEDIRLGRMVVIVDDEDRENEGDLIMAAELVKASDINFMVTHGRGLVCLPLNRTRAADLGLAPMVQANTAQFQTNFTVSIEAAEGVTTGISAHDRAHTIRTAVKPNAKPSDLHQPGHIFPLIAQPGGVLTRAGHTEAAVDMAMLAGLEPAGVLVEILNPDGSMARRPELEVFAREHGLKMGSIADLIAYRLATEKTVERVDEREIDTEFGPFKLVTYRDRIAHDLHFALVRGTPDAETPTLVRVQVENPLADLLHWRRDDFGVAATDALRAIDAEGAGVMVVLSAPRDGEALLARLRQQPAPVVPGKDKDVGQWRRNGAGAQILSDLGLGKLRVLGTPRRQIGLAGYGLEVVETVTL
>NZ_CP052863.1|WP_164221741.1|710671_711298_+|riboflavin-synthase
MFTGIIEGVGRLAAREPIGGDVRFTFNVGNLPFDNVQMGESIAINGVCLTVIAFDASSFQADASTETLGLTTLGQLGEGAVINLERAMRPTDRLGGHLVSGHVDGLGQVLSIHEDARAQRWRFAAPAALRRYIAKKGSICVDGVSLTVNEVDDEGFEVALIPHTVANTAFSAAGVGSAVNLEIDLVARYVERLISVPTNGQHPQGDVA
>NZ_CP052863.1|WP_169448117.1|709639_710260_-|hypothetical-protein
MRKILIVAALLAAAPFSASADALSYTYVEGGWTQVKVDDNALDDPKVDGGYLRGSVAIAEQVYVFGGWSRTSKTNHYGNDSLKLELNQPELGIGYHMPWTDRLDFTADAAWVRQNAEATVRYDGLRFSQKDHTNLGRVTMGIRGKPSRMTEGWVKAGYMDGGNNFKGTWVGTAGGQINFTKTWGLVGEISGYRDVTQYSAGVRASF
>NZ_CP052863.1|WP_088436087.1|708601_709486_-|hypothetical-protein
MKTPTRTLLASVLLCAPLIASAAPAQLTPEQAFDLYARVLLEDDAAATRTLNDALKPAFEGQDAVTPNPGALAKALAEPWQTVLASTGAKVDAAATEALYAKALRDSKCRATKSVIEDNEYVEDQKLARITYSCQLPDLGKVRPLFAASLADNASPAARKQFTDAYTQALQSGARVPVSSTFTLYPAKDNGYWYSGNFDDLVGTVAGALAPFEDWMQDAQAANAPKVTGVPGCDLLLQQHRACVAKIAPDQISGVDAMAEELKAKAQVKSTDEMTQECKALRPIAEMMWTDECA
>NZ_CP052863.1|WP_164221763.1|707473_708553_+|hypothetical-protein
MLPALLALGMVVSPGAFADGDDPAAVRAITSAQALQDLAAVIECRAPTSVREPLSRNVWDVVLGDGKRAKPPFDAWIVVKQPNSYLHEVELPSPITVFGYPTQRIAVLSEGTMAILDDVSFETISKQLEMNPLHATAAPHIHVRNLSLRNVSEIGFSVRSLTASRVSTHPDSVLVGCEERYDTRMEQLLRRGKEPDVVFAPGVDIATELDDVLSCNADALRNYTADWAVTMSAHTTDTRFKGWKDGEDEEGNRWWVPPAPIMIAGRPVSRLVKVGQTLYAELDGDIAETLAEEWLLPPYDGWSDAAFVGFYDTGTAADGWLEDRARIVRAWAPGKTLHGCEYQQNRPEFGEHPDDDDEG
>NZ_CP052863.1|WP_164221745.1|706725_707199_-|hypothetical-protein
MEDTFAAYARVITQNDEDARTALRNSLRTADPDNYPDIGDVVDALYAFENLATGFEEPAASAINARRKTIHCRSVRTEEDSSSHRGVVDYQCTLPDVSGAFDAYRENLARSRAGDPDGDAFRTFLRIYAATLRDAPDTTYVAASRVRPRPQLLRVCQ
>NZ_CP052863.1|WP_138496782.1|705937_706651_-|hypothetical-protein
MSPLRVAASPARACRSIIWSRSASSGGRSRWSSGSQVAHGYTFEKWMALFSGSPTVMITVQAPRDHALTHRQAMQALATVTLRPQATLEQRIAAMPFSVEPASPFRLLDTLSGSAVALTAGELDTDPDGLQPLVIVASQLSLPFASDDPEKVSDQLIAGTVSIQGGTITSRENVPFGGIAGHRVDGVTPDGRHYRNYLALWPDERFVRLVAILPADSSKEVEDAVDAMASSVRFRGP
>NZ_CP052863.1|WP_108270236.1|714935_715346_-|hypothetical-protein
MTASPYPHLFATLGEAATRLPDDLARTLEDTLVALQTGNSPGAITLQACLQYIRQGDAADGQPWPGSNRTPGQRLALARIDRANAGLSFLLELLHATERVRVDGDIDQHMDDGAREGLLLACRGLAEYVDVQLHAA
>NZ_CP052863.1|WP_049451438.1|715833_716556_-|fimbria/pilus-periplasmic-chaperone
MKIRAMTWMTALLAGALALPASAAVTLQGTRIVHDAAQGRDVTVKATNGGDKAAMVQVWIDDGDSHARPENVRTPFRLTPADPRLLQAHQGQAYRITYAPRPSETPLPTDRESLFYFNLLDIPPKPTDAAGKNLLQFAVRTRVKLFHRPAGLPGKPRDAAGQLQWRAQAGALLVSNPSAYHVTVSTLTLPDGRKVEAEMIAPGAQVRLPLPSGAAMPASVTFQWLDDYGTPRDAEAKISP
>NZ_CP052863.1|WP_049451400.1|716611_717127_-|type-1-fimbrial-protein
MSNRLNLIAAGALALALSPAAFAEKLEITGELMTSTCSVDATGGTITVPMGKVDVAWVNEAERAGMKNFSILLDCTGSGAAQDVGVRFGGTPDGSTGNLALTAASTATNVGVALYDASGNHQKLGEDPLQWVNIPAAGKGQLDYSAWYSSPGKNATAGTANASGDFVVLYK
>NZ_CP052863.1|WP_169449083.1|717545_720080_+|fimbrial-biogenesis-outer-membrane-usher-protein
MRLLHLRTPHRFASRPLGLAIAAAVAMAIAGHASAHGDESLQFSEGFLIGGRAIDMQRYAQGNPMEPGVYPLDVVVNGQFHDKRDITFVAAPAPLGATPCLPAGLVRQLPLKEMFLAELDQDDEGCVALPSLIDGGTVEFDESNLQLLVNVPQAAQARDARGYVAPAQRDHGVTAAFFDYNINHSRNQGQQATYLGLNTGVNLGAWRLRHRSSFSQGSHGSRHDVISSTLQRDLPAWNAQLLLGQGTTGGELFESLSFTGVRVASDERMLPDSLRGFAPVVQGVAETNAVVSIRQNGHVIHEVSVAPGPFSIEDLYPTNFGGDLDVTVTEADGRQQQFTVNFSAVPQALRPGASRFSVTAGELRDARGVREALRFAEGTYARGISNHFTALGGVQIAEDFQSALFGGAINTPLGAFGADVTHSRARLANGEQVTGNSFRLNYQRYITATGTNFGLAALRYSTRGYLSLNDFAQAYNDEWGVSGRARQRFQVNFSQRIGERSTLSLNGGQVRYWDSAQQHNDLQLRFQTSMGRANLSLSAMRLQMGDGRQDTRYAATFSIPLGSAPRAPRLSTQVAHSARGDQGQLGLNGTLGADQQLSYSLSASDSSDGAGSANAYASYRGGHGTVTAGYSRSGDYNAFNASAAGSVVVHRDGINFGAPVGDGFALVQADGAQGARIGYGSDVRIGRNGYALLPHVSPYRWNQIELDPSGLPMDVELLQTSQRIAPTAGSIVRVAFNAKRERTLFIDATDALGQPLPFAARIEDETGRSYGAVGQGGVIQLRGAPEQGQLIVDPDGPHRCRLEYTTPDAPDAYGLSWSQAVCTPLPAPSNGLQAALDAVEATSF
>NZ_CP052863.1|WP_099605830.1|720118_720628_+|fimbrial-protein
MNLFNRITLCTALLAAAPLALADSATLTISGKVLPGTCTLTAAPITLDPVKASDLTPGADAQIKAGALQFAGCVGVSKAVLSFAGTAADGDATRWKNTAVSDAAEGVSISLLSGTTGSNYLKDGDTGIDVPVAGATARYDLRAAYFLPTGEAPSAGEVSTEIVVTADYE
>NZ_CP052863.1|WP_169449084.1|720718_721687_+|fimbrial-protein
MVLRKSIPAKLFTALALVVTAGAAMACEQYSAKPDVLLDTVYTSPPSGANVFMAEERGRAAYEKCSLPGGTVSVFVRLEIPGLVYVGDIQYQGRAYASYATGTDSALLAFDAYSNIFDRRPLRLGEELELPYETAAGDGLQNTINYTALVFSRGGRMRTSSVRTGQVSLRSPAHPELDLTSSYYLAPQFPAVTCPLQDVSETLQDVQLAELPVPGSTAKEKPVAVRMSCGTDAPRAQITLTDAGDRTNSGSQLTPTADSDAKGVRVQLLQGGSEVNFGRIWDFEPGVGGTHDIAFTARYIRTNEALEPGQIKGEAVLNVDYW
>NZ_CP052863.1|WP_169449085.1|721854_722814_+|fimbrial-protein
MPPCALPYILLAALLLVTGAAQACEHYTAYPDVVVDSVYLSAPVAPCVFMAQERGRSALRKCSFPGGPIAVLVRLDVPGLVYAGELHYEGRTYASYASSPDSALLAFDVYSNIFERKPLRLGEELAMDYQTSAGDGLQHTINYTALVFSRGGRMRTSSVRTGQISLRSPEYPGLDSSAAYYLAPRFPAVTCPLQDVSEVLPNVQLAELPGPGSTAKEKPLAVRMNCGSDAPRAQITLTDAGDATNSGSQLTPTPDSDAKGVRLQLLQAGREVNFGRIWRFEPGAGGTHEIAFTARYIRTNESLVPGLIKGEALLNVDYW
>NZ_CP052863.1|WP_169449086.1|723629_723920_+|fimbrial-protein
MECGANVPRAELMLKDAGDAGNTGSLLTPTADSGAKGVRVQLLRGGSEVQFGRAWHFNPGTGGVHDHAFTARYYRTADALVPGMIKGEAVLNVDYW
>NZ_CP052863.1|WP_088436081.1|724005_724596_+|hypothetical-protein
MRLAIVHYTRLRSLLGSVLAGLSLVSGPAMACEHYTAYPDVVLDTVYAAAPVQPRVFMDQERGRSSLRKCAFPGGPISVFVRLDVPGLTYAGDLQYQGRTYASYASSPDSVLLAFDVYWNLLDRRPLRLGEELEMEFDTTAGDGLQYVISYTALVFSRGGLMRSSPVRTGLISLRSPEYPELDSSGDYYLAPVLKP
>NZ_CP052863.1|WP_169448120.1|724776_727692_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MRSHQIQYSALALALTAALAVGIPVRAHAQQVIADGDAQTPAAGDYSATGVGNHAFHALNGGSIVPLGAVNVSADGDGASAARAEGAGSRIELNGSTLVTSGFGATTALATTGGELHLTATDVINKGTGMGVAAHTGSQATLQDVNIRMEGVSSVGLAGGGDISMTGGSISAMGLGSRAVSATGANMTLTGVSIEGESGIWLGDNNQLDLSGSAVNASGIALDINGRSNAVTVADSSFHSTGNGTATVKMFSDSTLAMARSSVISEGDRAVGIDARTGTVDLDRVTVTTSGESSHGLYADFTGIGAGPIITARAAQIHTTGAGAIGAVARQGGSIHLDDNIIRTEGQQAHGVLTGGSGGMTLTGSHIRTEGEGAWAAVINDNGSLGIDGSALESVQHGGVWVRSSRDSGLTLSNNAYVSGGNGIAIALDAAVAGRFDVVLQGHSQMVGDIVITPEDEDAGLVPQSDVHVRLADGSLWQGTSNLVQTMAIESGSQWTLTGDATVGELSVLNSGVALSDGSGRFNTLTVDGDLHSEGATFLFQGALGGDDSAFDRLHVRGDTSGDASIAVKNIGGVGAQTTDGIQLIEVDGASLATYALAGRAVGGSYEYFLFKGGVIDPTDGNWYLRSQWFDICKDNPAAPGCVVDPVDPVDPIDPVDPVDPVDPVPVLRPEAGAYLANQSAAINMFSHRLNDRIGAVSLDEGRAAWARVGRQQADFSAVGGQLSIDGNTSVLQIGTDLVRRGNAAFGVMMGTGRADSSAVSDLTGYSAKGRVRGSAVGVYGTWMQAADGTQGAYMDANLQYGRFDNRVQGIGLEPEHYDSRMTSASLETGYTFNVWQGTASALYVQPQLQLSYVDFRADRHVESNGTVIDHADAGGLSGRLGVRVFGHDTAAGNTVQPYLGVNWLRGSGTSTLQFNGDTLGADVPRNRYEVQAGAELKLGQRWGAWGGVSVQRGDYGYRNVGGQLGLRMAW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP052863_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_3

785760-785859

Orphan

Consensus_repeat	Method
TTCATCCACGCATGGCGTGGATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_3

>merge|NZ_CP052863|3|785760-785859|CRISPRCasFinder
TTCATCCACGCATGGCGTGGATCTGCCTCATTGAAAGGCAAACAGAAAAGCCCGGGTGTCTGCACACCCGGGCTTCTTCATCCACGCATGGCGTGGATCT

>NZ_CP052863|3|3|785760-785859|CRISPRCasFinder
TTCATCCACGCATGGCGTGGATCT	GCCTCATTGAAAGGCAAACAGAAAAGCCCGGGTGTCTGCACACCCGGGCTTC
TTCATCCACGCATGGCGTGGATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_005408109.1\|780993_781821_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382
NZ_CP052863.1\|WP_169448129.1\|792212_792812_+\|Hemin-transport-protein	unknown	unknown	gnl\|CDD\|226243
NZ_CP052863.1\|WP_005412266.1\|775008_775515_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP052863.1\|WP_049451428.1\|783562_784480_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176164
NZ_CP052863.1\|WP_169449087.1\|790000_792208_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP052863.1\|WP_099605842.1\|772209_774921_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP052863.1\|WP_169448130.1\|792885_793821_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_005408121.1\|796430_797078_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP052863.1\|WP_005412278.1\|789616_789811_+\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
NZ_CP052863.1\|WP_169448125.1\|775675_776887_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP052863.1\|WP_169448126.1\|777212_778928_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|153248
NZ_CP052863.1\|WP_002811889.1\|797885_798599_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP052863.1\|WP_169448128.1\|788340_789312_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381369
NZ_CP052863.1\|WP_169448131.1\|793923_796434_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP052863.1\|WP_049451433.1\|797153_797798_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NZ_CP052863.1\|WP_043035375.1\|778924_779725_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343
NZ_CP052863.1\|WP_012479176.1\|781878_782874_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP052863.1\|WP_032966440.1\|783021_783453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_169448127.1\|779886_780945_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP052863.1\|WP_005408115.1\|786848_788147_-\|nucleoside-transporter-NupC	unknown	unknown	gnl\|CDD\|224883

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_005408109.1\|780993_781821_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	2.86608e-27
NZ_CP052863.1\|WP_002811889.1\|797885_798599_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.26547e-75
NZ_CP052863.1\|WP_005412266.1\|775008_775515_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	2.57412e-64
NZ_CP052863.1\|WP_049451428.1\|783562_784480_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.42576e-84
NZ_CP052863.1\|WP_169449087.1\|790000_792208_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	4.17746e-124
NZ_CP052863.1\|WP_099605842.1\|772209_774921_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP052863.1\|WP_005408121.1\|796430_797078_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.38013e-97
NZ_CP052863.1\|WP_169448129.1\|792212_792812_+\|Hemin-transport-protein	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	0.00225459
NZ_CP052863.1\|WP_169448125.1\|775675_776887_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP052863.1\|WP_169448126.1\|777212_778928_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	6.52488e-58
NZ_CP052863.1\|WP_005408115.1\|786848_788147_-\|nucleoside-transporter-NupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	9.89476e-142
NZ_CP052863.1\|WP_049451433.1\|797153_797798_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	2.56511e-85
NZ_CP052863.1\|WP_043035375.1\|778924_779725_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.24611e-70
NZ_CP052863.1\|WP_012479176.1\|781878_782874_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.53424e-147
NZ_CP052863.1\|WP_169448131.1\|793923_796434_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	2.52973e-176
NZ_CP052863.1\|WP_005412278.1\|789616_789811_+\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	2.47066e-16
NZ_CP052863.1\|WP_169448127.1\|779886_780945_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	3.56963e-25
NZ_CP052863.1\|WP_169448128.1\|788340_789312_+\|aldo/keto-reductase	gnl\|CDD\|381369	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR). Voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa are founding members of aldo-keto reductase family 6 member C1 (AKR6C1) and C2 (AKR6C2), respectively. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	0

>NZ_CP052863.1|WP_049451428.1|783562_784480_-|LysR-family-transcriptional-regulator
MLPTERLRGIEAFVATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGEGFYRTCVRVLGELADAESVLVSHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPQLHPQVTFSDRFSDLAEDGVDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLLRHGQPRSAAELAGHDGVLFGRADGSIGPWQVADGRQRSTPLQARARLVVGSAEAQVAAVEAGFGIAQLATWLVDDALARGSLVSILPSLDCRGLPLRLLWPQGRQRLPRVDVALDRLGAGLPIDPPR
>NZ_CP052863.1|WP_032966440.1|783021_783453_-|hypothetical-protein
MDGFPWLLVAAAGSAIAALLHIGCIAFGAAWYRYFGAGQRMVRLAQAGHWWPPLMTAGITAVLVAWALYALAAAGWHSPLPASRLVLTGIALLLLLRAAMGFGLALLRPGYNGRRFWVASSLVCLCLGLAFALGTRQAWQSLG
>NZ_CP052863.1|WP_012479176.1|781878_782874_-|tRNA-dihydrouridine-synthase-DusB
MQIGPYTIAPNVVLAPMAGVTDKPFRLLCKRLGAGLAASEMTISDPRFWNTRKSIHRMDHDGEPAPISVQIAGTEPQQLAEAARYNVDHGAQIIDINMGCPAKKVCNAWAGSALMRDEQLVARILEAVVNAVDVPVTLKIRTGWDCDHRNGPLIARIAEDSGIAALAVHGRTRDQHYTGQAEYATIGEIKAALRIPVIANGDIDSPQKAAYVLKETGVDAVMIGRSAQGRPWIFREVAHYLATGEELPPPSLAEVRDILLGHLHALHAFYGEPQGVRIARKHLGWYAKDRPENAAFRAVVNRAEDPASQIALTTEYFDRLIAGEPALPSAA
>NZ_CP052863.1|WP_005408109.1|780993_781821_-|methyltransferase-domain-containing-protein
MTPPISSPTYLHGFSGTEQQRLMTQARLLESSIFGQIDYSGARRLLEVGSGVGAQTEILLRRFPELHVTGVDLSETQLATARENLARTPWCSDRYTLQQADAGELPFEARSFDAAFLCWVLEHVPSPARVLSEVRRVLAPGSPVYITEVMNASFLLDPYSPHIWRYWMAFNDFQYDHGGDPFVGAKLGNLLLAGGFRDVHTEIKTIHLDNREPARRKTMIAFWEQLLLSAADQLLQAGSVDEETVEGMRREFRLVQNDPNAVFFYSFVQGRATVY
>NZ_CP052863.1|WP_169448127.1|779886_780945_+|metal-dependent-hydrolase
MDSLTQIVLGGAVAAAIAPPGHRRAALLAGAALGTLPDLDALWLGFTAADPVANMIEHRSFSHSLLVLPWVAALIWWLFKCFGNGRVAQSPVRWFWAIQLALVTHPVLDAFTVYGTQLWWPLRPPPTMGSSVFIIDLGYTVWLLLGCVLAWFGRARPWAGKVLGVALLLSSAYLGWGLIAKAQVDRAAQQSLAAMGLGDAPRFSVPMPFNTLLWRVVAMTPNGYVVGDRSLVADHGPMQFEGHASNVQALREAGSIPAVQQLTWFNRGFMRAQVVDGRLVLSDLRMGLEPDYTFNFAVAEQVDGQWRPITPEQVRTDYSSPAARADAGRRLAAMWQRIWHEPAASGTGAAHP
>NZ_CP052863.1|WP_043035375.1|778924_779725_+|UDP-2,3-diacylglucosamine-diphosphatase
MSVLANLSPHRRAVFVSDVHLGSRHCHATELARFLSQLRCERLYLVGDIIDLWWMAHRRANWRQSHSEVIQALHALRRAGTEIVYIPGNHDASLRQVCGLMLPAMQVRRRAIHVTADGRRLLVAHGDEYDGVTHFGGLQEKFGDWLYYRILTGNQALNAVRRRLGMRYWSLSEFLKKRSGAAERYIERFVQAGLDDVRRRGLDGIVCGHIHRAALIERDGLVYANDGDWVESLTALAEDHDGALRLLDHNGQTLVELPGARLSQAA
>NZ_CP052863.1|WP_169448126.1|777212_778928_+|GNAT-family-N-acetyltransferase
MQELEQRLQQRFPDWFHGRRGQLARPLLRSVGRWSRLDQIEAFLQRSAGLRGFGFVAAGLEFIDGQYQVDPAALAKIPATGRLLIVANHPSGALDALALLDAVGRIRRDVRIVANDLLGAIAPLQDLLLPVRILGGKAQRGSLHAVEEALAAEQCVIVFPAGEVSRLSLRGIRDGRWQRGFVRFARAAGAPVLPVRVEARNSALFYGASTLFKPAGTALLAREMFTRRGRPLRLSIGEPMQLGKGGDPGAQLLAVRRALYALGRNGTAGNAAAFAGPEPLAAPVPPSQVAAGIAAATQLGQTADGKQILLATCSADSPLLLELGRLRELTFRQVGEGTGRSRDLDDYDPQYEHIVIWDAAAQRIAGAYRIMRGAHALARHGLSGLYSASLFRYSDDAITHIAEGLELGRSFVVPDYWGSRSLDYLWQGIGAYLQCRPGIRYLFGAVSISAALPRDAREQLVAYYQRYYGGTAGLAESNRPFQYFAAPPSFGELDAGAAFDVLKANLAALGTGVPTLYRQYTDLCEPGGARFLAFGVDPDFSDSIDGLIEVDLCAIRPNKRKRYLRDAGTPA
>NZ_CP052863.1|WP_169448125.1|775675_776887_-|methionine-adenosyltransferase
MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVITDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVDRKKPEEMGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSPLSWLRPDAKSQVTLRYENGVVSAIDAVVLSTQHAPGIKQKDLIEAVREEIIKPVLPAKWLHKGTKFHINPTGKFEIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLIHPMYQQTAAYGHFGRKPKEFSYINGEGETVNATAFSWEKTDRAAALRADAKLK
>NZ_CP052863.1|WP_005412266.1|775008_775515_-|acyl-CoA-thioesterase
MSTELKTHQLSMTVLMSPEMANFSGKVHGGAILRLLDQVAYACASRYAGSYVVTLSVDQVMFRQPIAVGELVTFLASVNYTGTSSMEIGIKVVAEDILKRSVRHANSCFFTMVAVDEEGRPTPVPPLQPVTSDEKRRQAAALIRRQLRQEMEQRHLELLASNPPSPEE
>NZ_CP052863.1|WP_099605842.1|772209_774921_+|phosphoenolpyruvate-carboxylase
MNEYRSSIEFASPDLPLRDDVRRLGALVGDLLVEQVSAAFLDDVEDVRTRAIARRENQAPLSELADGLAGRTPQQAETMVRAFSTYFQVVNIAERVHRIRRRRDYQRAGTAGAQPDGLQDALQHLKAQGVGLDELAQWLPRIDIEPVFTAHPTEAVRRALLEKEQLMVASLVDNLDGQRTPGEAAADAARFRMALTASWQTTDSSPVRPTVDDEREHVGFYLVQVLYRVIPVLYESLQQALRDTYGEELPLPRLLRFGTWVGGDMDGNPNVDAHTIRNTLDAQRQAVLGRYQKELLQLASLLSQSTERVGVSDALQARVAQYQQLLPQVQSRPRHADMPYRLLNDRMRARLQATLDDGEGAYAGPAELIDDLQLILDSLRANRGEHAGGFAVQRLLWRVKTFGFHLARLDVRQESSVHARALATALGGEEAWQALDAVGRARLLSPHASGETALPNGDDEGNQRLDAVFAALADARARHGCDALGSYIISMAHDRSDVLAVLALARRGGLVEENGSVPLDIAPLFETVDDLKCGTATLRDLLADPIYRAHLQARDDVQMVMLGYSDSSKDGGIAASRWGLQRAQVELLEVAAEAGIRLTFFHGRGGSISRGGGKTTHAVDASPRGSIDGRLRVTEQGEVIHRKYGIRALALRSLEQATGAVLRASLRPRAAEPREDEWRPVMDAVSSASSEVYRAFVGQAGFMDYFRTATPIDVIERMTLGSRPSRRLGQDAALGNLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVDAGHEETLREMARDWPFFRTFLDDIAMVLSKGDITIAEQFSLLSGGLHDRFFPQVQRELELTRHWLLALMDQQTLLDHDARLALSIRLRNPYVDPISVLQVDLLQRWRASGREDDDLLRALVACVNGVSQGVQNTG
>NZ_CP052863.1|WP_005408115.1|786848_788147_-|nucleoside-transporter-NupC
MVEGLGRIGFGLFGLAVLIGITWLFSNNKRAVDWKLVATGITLQIAFAALVILVPGGRDVFDALGHGFVKVLSFVNEGSGFIFGSLMDTKNYGFIFAFQVLPTIIFFSALMGVMYHLNIMQAIVRVMAWAITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIARMTQSELLTMMIGGMAHIAGGVLAAYVGMLGGGDPAQQAFYAKHLLAASIMAAPATLVVAKLLIPETGTPLTRGTVKMEVEKTSSNIIDAAAAGAGDGLKLALNIGAMLLAFIALIALLNAPLTWIGEVTGLAAQIGKPTNLSTIFGYLLAPIAWVIGTPWADATTVGSLIGQKVVINEFVAYTELSQIVNGQVAGVSLSSEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRHDLAKFGLRAVLGGTIATFMTATIAGVLTHFS
>NZ_CP052863.1|WP_169448128.1|788340_789312_+|aldo/keto-reductase
MQYRRLGSTGLPISALSFGAWVTFGDQIARDEARNLVAAAWDHGVNFFDNAEGYANGRAEQVMGDVIADLRLPRDGFCVSSKVFFGSAKDPRPTQRGLSRKHVTDACHAALKRLRVDYLDLYYCHRPDPDAPIAETVHAMDTLVRQGKILYWGTSEWSAVQIQQALDIAEARNLQGPSMEQPQYNLLHRERVEVEYAPLYAGAGLGTTIFSPLASGLLTGKYDQGIPADARLGREGMEWLQDLVLGADAGARLGQVRRFSEVARALGHAPATLAIAWCLRNPNVSSVILGASRVSQLLQNLQALDVLEQVDAAGWAQVEGVFA
>NZ_CP052863.1|WP_005412278.1|789616_789811_+|hemin-uptake-protein-HemP
MNAQPVLLRPETLTLRDRPVRVVPPEEVIDSEALLKGRREILIQHGDRFYRLRHTSNDKLILTK
>NZ_CP052863.1|WP_169449087.1|790000_792208_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALPLSAHAAATAAPDAREFDRVQVTATRTERAVSDVAATVDVIDREQMDRHLVQDIKDLVRYEPGLSVTRSATRFGLDGFRIRGLDGNRVRIQTDGIVMPTRFDIGSFASSNRNFTDLDTLKRVEIVRGPASSLYGSDALGGVVAFVTKDPADYLKDGKNSYFGLKFGYDGEWKGLLGGATAAFGGDHWSGLVNVNHHQGQETDNKGTVRSDNDTRTASNPQDRDGRSLLSKLVYAPSEDQRFRLTVEGNEDTTDTNVLSAIASVAPRPGAMAVATGMKSHDTQKRNRVSFAHEMDALDQPFADSLHWQVYAQNSETRQQTDETRTDGTRRHRVFSFDQHAYGLQAQFNKAFTTGSVEHALTYGFEGTRTEIRQKRDGYQVSKAGVVSNTVLPDTFPVRDFPISKTTELGLYAQDEMRFADGRLSLVPGVRVDRYELKPEVDSIFAEDNPTTAVAQLKKTSVSPKLGMVWRFTDEWSLFAGYARGFRSPPYNDVNIGLTNVAFRYTAIANPDLKPETSDGYELGLRFIAPAAYVSVSGYYNDYKDFIQSNVDTGRNAQGLTVFQSQNIADARIYGAEMKAGIEFGELSPALKGWALRSALAWSRGDNRTDDEPLASVDPLRGTLGLMYDTDTWGVELAGTFVQRKKRLPPPAAQTNPNAPAPFVYQPAGYGVLDLMAHWNFAPGATFNVGVFNLADKRYIEWSSITPSLITDRALSDRFSSPGRTFSASLAVSW
>NZ_CP052863.1|WP_169448129.1|792212_792812_+|Hemin-transport-protein
MSRALSARRNDSIVAPNSAAWPTPAQLATLGTVLCLYHADGNELGGWRQAVRVHACQGVDSEGLRESLCFLDGRGRCVWRLYLLPDSDFLAWDRLVAALPPGPEHDSEASVGERLWRRLAGHLGGQRWRLCALRLHAADDGRTLAASLSTLSSLGAATARRVARLEGAEGELAIDDCCCADAARRPAPQIPGDLPLIRL
>NZ_CP052863.1|WP_169448130.1|792885_793821_+|hypothetical-protein
MKLQTASAMLLLAASGVASAQPSDIARDHDSILAMQGEYTVDFAFDETVLLKPGYERAPAMRSGGSEVVIVVEDTPKRIVLQHLLLDEKSGHITKHWRQDWVYEAPNRFEFSADQTWKVRNIPSAVNQGAWTQCVYEVSDAPRYCGTGTWTYTNNVPSWTSDLSWRPLPRREYTKRSDYNALAVVNRHTLTPNGWTHEQFNTKVQRNADGSQVEIAREFGFNDYVKTTEVDFTPARNYWKATAGYWAKVRQRWDGFLTQAPGVHLKTRIDGMAMIIPLFTQAEEIQSGKKVKDTQIDEVFAKYVEKAPNEG
>NZ_CP052863.1|WP_169448131.1|793923_796434_-|FtsX-like-permease-family-protein
MNLLRHAWRALRREALAGDLLTVFAALVLGVAVMTAVGTLVNRVNLALTGSAAEMLGGDLGIAGRDDPPQAFADEAQRRGLAFTRIASFGSVLFNGDASQMASIKAVQAGYPLRGTLRVRSTPGGALIANAGMPPKGQAYADPRLLQGLGLKAGDDLEFGAGTLRIAGIIEAEPDAGGDLLTLSPTLLVNRADVEGTGLLGPGSRINYRLMFAGSADQVAALRQWLLPQVKGLRLLSVDDTQRGVRQAFDLAGRFLGLSALLAVLLAGVATALAANRFALRRIDQVAILRCLGARQRDILLGLALQLLMLALPACALGIGLGMAAQEGLVQVLGSLVPQRLPLPEAMPALTGAGIGLLLLFGFGLPPLLRLRGVAPMRVLNRSFTALPPASLLAYVAALAASLLLAVQVTGDLKLALWVLGGLAALAVAAGVVGFVLLQLLRGLQHRLHGHWRLGLAALTRRRMLAVMQLVGLSLSLCALLLLAVTGPGLLQQWRERLPADTPNYFLINIQPEQRDSVLAALRGLGANDASIEPMATGRLIAINGKPPLRVDPAAAEGNGTSNGPREDDDENRPLNFSWRSTFPPANALLEGRFWQAGSTAAEASVETGWARRYGAHLGDRITISVGEQQREFTVTSIRKADWNTFRPNFFVLLNPNAVGDTPHNLLSAFHLPSGNAAGLGELVRAQPNLSLLDVDAVISQVRDVMERVAQAVQLVMVFSLLAGVLVLLAALQTTAGERRYDSAVLRTLGATRRQLRGAVLVEFGALGTLAAMLAVGAAAAIGVAVSQKVFELPLLPPWPGLLVGGVVGIGLSLLAGWWGTRAILHTPPALALREA
>NZ_CP052863.1|WP_005408121.1|796430_797078_-|ATP-binding-cassette-domain-containing-protein
MQGPEGEVHILDNITLTVHEGTSVAIVGASGSGKTTLLGLLAGLDLPSRGRIALAGQDLSALDEEARAQLRAREVGFVFQSFHLLPALTAAENVALPLELAGREDRARVDEVLAQVGLAHRARHYPRQLSGGEQQRVALARAFVTRPRILFADEPTGSLDHATGQHISDLLFELNAGSGTTLVLVTHDLRLAQRCQYIHRIDDGRLLPVERGAQA
>NZ_CP052863.1|WP_049451433.1|797153_797798_+|arylesterase
MRKTGWSRRAGAMMVLLLGFLLLPGLACAKGPAGTVLVLGDSLSAAHNIPADAGWVSLLQQRVRQQSKTPARIVNASMSGETTAGALTRLPGLLAKEKPTVVVIALGGNDALRGLTPAQVQGNLGKMVQASQKAGAKVLLLGIDVPPNYGPAYRQRLAAAYNALATQYKVPLLPFLLEGVALQPGMMQADGLHPTAQAQPKVLDNVWPLLRPLL
>NZ_CP052863.1|WP_002811889.1|797885_798599_+|response-regulator-transcription-factor
MRQTKETSGLVLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEVCRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRERRQVGSEVLKVADLVLDPVSMRATRAGTELQLSPIGLRLLTILMRESPRVVTRQEIEREIWGNGLPDSDTLRSHLYNLRKIIDKPFDRPLLHTVQSAGYRIADIAQPMA

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Crispr_ID: NZ_CP052863_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_4

848483-848587

Orphan

Consensus_repeat	Method
TTTGCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_4

>merge|NZ_CP052863|4|848483-848587|CRISPRCasFinder
TTTGCCGGCCAGCGGCCGGCACTACCGCATCCACGCGTGGCCGCTGCATCGGGTAGGTGCGGGCCCTGGTCCGCGCGCGTTTGCCGGCCAGCGGCCGGCACTACC

>NZ_CP052863|4|4|848483-848587|CRISPRCasFinder
TTTGCCGGCCAGCGGCCGGCACTACC	GCATCCACGCGTGGCCGCTGCATCGGGTAGGTGCGGGCCCTGGTCCGCGCGCG
TTTGCCGGCCAGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_005408165.1\|839219_839774_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP052863.1\|WP_012479222.1\|849191_849743_+\|putative-Fe-S-cluster-assembly-protein-SufT	unknown	unknown	gnl\|CDD\|213809
NZ_CP052863.1\|WP_005408173.1\|846660_846981_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|378941
NZ_CP052863.1\|WP_169448142.1\|843988_845062_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
NZ_CP052863.1\|WP_088435867.1\|841615_843937_+\|DUF1631-domain-containing-protein	unknown	unknown	gnl\|CDD\|377917
NZ_CP052863.1\|WP_169448146.1\|856050_856620_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239264
NZ_CP052863.1\|WP_024957742.1\|848649_849069_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_005408184.1\|857227_858010_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP052863.1\|WP_012479220.1\|846977_848438_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	unknown	unknown	gnl\|CDD\|376743
NZ_CP052863.1\|WP_005412319.1\|840702_841284_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_CP052863.1\|WP_169448143.1\|845977_846562_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236367
NZ_CP052863.1\|WP_005412326.1\|849802_850897_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NZ_CP052863.1\|WP_169448144.1\|851348_853091_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NZ_CP052863.1\|WP_005408166.1\|839770_840706_-\|exodeoxyribonuclease-IX	unknown	unknown	gnl\|CDD\|235591
NZ_CP052863.1\|WP_005408181.1\|854108_854702_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP052863.1\|WP_010481766.1\|853211_853697_-\|asparaginase	unknown	unknown	gnl\|CDD\|223330
NZ_CP052863.1\|WP_012479217.1\|845189_845651_-\|DUF3106-domain-containing-protein	unknown	unknown	gnl\|CDD\|378633
NZ_CP052863.1\|WP_005408182.1\|854779_856054_+\|YihY-family-inner-membrane-protein	unknown	unknown	gnl\|CDD\|179791
NZ_CP052863.1\|WP_169448145.1\|853776_854112_-\|DUF2069-domain-containing-protein	unknown	unknown	gnl\|CDD\|378269
NZ_CP052863.1\|WP_012479218.1\|845654_845981_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_005408165.1\|839219_839774_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.2487e-37
NZ_CP052863.1\|WP_012479222.1\|849191_849743_+\|putative-Fe-S-cluster-assembly-protein-SufT	gnl\|CDD\|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.86367e-102
NZ_CP052863.1\|WP_005408173.1\|846660_846981_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	4.53939e-33
NZ_CP052863.1\|WP_169448142.1\|843988_845062_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
NZ_CP052863.1\|WP_088435867.1\|841615_843937_+\|DUF1631-domain-containing-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
NZ_CP052863.1\|WP_169448146.1\|856050_856620_+\|redoxin-domain-containing-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	3.29416e-35
NZ_CP052863.1\|WP_005412326.1\|849802_850897_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
NZ_CP052863.1\|WP_012479220.1\|846977_848438_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	gnl\|CDD\|376743	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.	0
NZ_CP052863.1\|WP_005412319.1\|840702_841284_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	1.70045e-51
NZ_CP052863.1\|WP_169448143.1\|845977_846562_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|236367	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.	2.08454e-64
NZ_CP052863.1\|WP_005408182.1\|854779_856054_+\|YihY-family-inner-membrane-protein	gnl\|CDD\|179791	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed.	0
NZ_CP052863.1\|WP_169448144.1\|851348_853091_+\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.89622e-125
NZ_CP052863.1\|WP_005408166.1\|839770_840706_-\|exodeoxyribonuclease-IX	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	1.47051e-84
NZ_CP052863.1\|WP_005408181.1\|854108_854702_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	4.9247e-59
NZ_CP052863.1\|WP_010481766.1\|853211_853697_-\|asparaginase	gnl\|CDD\|223330	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis].	6.49e-30
NZ_CP052863.1\|WP_012479217.1\|845189_845651_-\|DUF3106-domain-containing-protein	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	6.2439e-21
NZ_CP052863.1\|WP_005408184.1\|857227_858010_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	4.55689e-136
NZ_CP052863.1\|WP_169448145.1\|853776_854112_-\|DUF2069-domain-containing-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	0.00018303

>NZ_CP052863.1|WP_012479220.1|846977_848438_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta
MNISTVELLDWLVKASYLVAATLFLLGLQRMASPLTARSGIRWAGLGMLLATAATFFLPELHNVPLILVALLLGAGLAWWSAGKVAITDMPQMVALYNGMGGGSAAAIGAVELLRYAFLANRDTSHWSAQALADLAARQPSGTVLLLAVVGAAIGAVSLSGSVIAWAKLDGRLDKRVTWPGQQVMNLLVALAVVVLAIIAASTLSTWAIVAFFVLALTLGVLMTLPIGGADMPVVISLYNAFTGLAVSFEGYVLGNEALIIAGMMVGAAGILLTRLMAKAMNRPIRNVLFSNFGGGAGGEAQAISGSQKPIEAADVAAMMAFAERVVIVPGYGMAVAQAQHKIWELAQRLGQRGVKVKFAIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFANTDVVLVIGANDVVNPVARTDPASPIYGMPVLDVVNARNVVVIKRGKGTGFAGIENALFYADNTRMLYGDGAEAAASLVSELKALDGGH
>NZ_CP052863.1|WP_005408173.1|846660_846981_+|NAD(P)-transhydrogenase-subunit-alpha
MSDGFVALYIFMLAAIAGHVIISRVPVILHTPLMSGSNFIHGIVLIGAMVVLGHAQTPLEKALGFLAVVLGAGNAAGGYVVTARMLEMFKPSAPKGGKDEPKEPQA
>NZ_CP052863.1|WP_169448143.1|845977_846562_-|RNA-polymerase-sigma-factor
MVTPSEEPYPVLVSSPVPPSAETDALPASLEAFLASVGPRAFRFAEAGLRQREDAMDAVQDALLRMLDYADKPAAEWAPLFWSILRRRVIDVQRRRRFRLPFWRDNQDAEGGEIDWANPGPDPAQAHEQRQQYQQLVDALRRLPARQREAFTLRVLQDLDGATTARAMGCSEGAVKTHLARARQALQDYLEIHP
>NZ_CP052863.1|WP_012479218.1|845654_845981_-|hypothetical-protein
MNRSLPSDDTLRSLHAQSLHALSPATLARLRQARHGASATRHGRLRWWLASACSLVVALGIGLQFTGHGTLTGPAPAPVLASVEDNSALYDENPDLYLWLGDTDLAME
>NZ_CP052863.1|WP_012479217.1|845189_845651_-|DUF3106-domain-containing-protein
MSRLHTLPLLMTLLLLPALPALAQSAAPAPAARPAPATPLPAWEQLSEAQRESLLAPLRDRWNSADAGQRQRMLSHGQRWQTMSPEERDKARRGLRRFEHMSPEQREQARALFGQMRELPPAQRDALRERWSQMTPEQRKDWVRDNPPPAKPR
>NZ_CP052863.1|WP_169448142.1|843988_845062_+|NAD(P)-transhydrogenase-subunit-alpha
MAVALLGIKETAPGERRVALTPETARKLGALGITVWYEAGAGLAAGFTDAAYDDAGARAFDAGRWAEIDILLCVQAPPAAVLEQLKPGATVVGLLTPASDPGLAALAADDRLHLFPLQQLPRTTRAQAMDVLSSQAGMAGYKAALIAAERAPRFFPMLTTAAGTVRPAKVLVIGAGVAGLQAIATARRLGAQVEGFDVRPETREQIQSLGARFLDLGVSAAGEGGYARALTDEERAEQQRRLADHLRSVDVVICTAAVPGRPAPTIVTAAMVEGMATGSVIVDLAAESGGNCALTQPGQCIEHQGVTIDGPLGLASRGATQASEMYARNLLNFVALFVREGQLAFDWDDELLAKTRW
>NZ_CP052863.1|WP_088435867.1|841615_843937_+|DUF1631-domain-containing-protein
MMSAPTPMGSPGRDPAQLQRARDMVLPALCQAFGAALARFDDALFDRAGNAGSSQLLFLDAMRELRRRREDIAGAFSGHLQRAWDALASGEPMSAESTLSGPAEDGLSLLAEHVLESRLAVRNFATVLLRDFKPVLARLDRRLGRLVGGAELDADHNPISPEHLGVAIHEAFAGCELAPEVHLVLIKLCERDLRAPVGRIYEKLDEQLAAAGVMSQMGAPRRPPSAAPDPRMASGLDDLVEQRPGSGLDGEFGDDEQAAPAWAQRFAARWSERRGHMQQHLGAEGSGTGETHAGQQGMLLEALHELLQQTRHVREDATSAAQVAIGQQRPLSQREMMSVLSLLQATPSATLRAAIGEDGESLAQRLKSEVLSSATRLGVDPGQTRLDPQDEDAIDLVGMLFDVMLDERELEGRSRELIGRLVVPFVKVAMLDRRMFVQKTHPARKLLNSLAEACEGNTGESQAERMLMAKVEEIIERLVAEFNENLAIFLTLEEEFREFLVQHRRRVEIAERRAAETQRGQEKLEMARTRAGAELDRRIGDATLPPAIAEFLRQPWQHHLTLALLREGEEGASVAEALSLGDGLLEEVAEARRQIVGKPWLQAWQPELAKVFASVGVHGDAATGAIDALHDTLQGIAESRPELQRALPELPQVALPTPPVAESPAVELGGQIDADDFDNADADRFRRMEIGNWLDFVDKDGKVQAGKLSWVSPISSRLLFVNRRGVRFCVASPEELAVMVRLGRLRAHVDDGAFDSAMQGVIDRLDPGSATLH
>NZ_CP052863.1|WP_005412319.1|840702_841284_-|nitroreductase
MPDPAALLALDARRSVPSRQLAEPGPDPATLQRMLASAVRVPDHGKRVPFRFLKIAGDARHTLGDFLAERSRQRDPHAGEAVFEKDRQRFSHAPLVIVVVASPRPDPKVPEQEQLMTAGCVCFALLQAAQALGFGAQWLTAWMAFDPAVHAYLGLAEGEGIAGFIHIGTPKAAVPERERPDPATLLRDWTPPA
>NZ_CP052863.1|WP_005408166.1|839770_840706_-|exodeoxyribonuclease-IX
MTLPVPPPSLYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGSALHVHRGSHRGVIISADKDLSQLLLDHDEQWDYARNQRWNVAGVKARHGVHAHQIADYLALCGDAVDNIPGISGVGSKSAAVLLAHFGSMDALYERLDEVPFLRLRGAAQMAVRLREQREHAQLWRQLTTIALDAPLEGSQPGLLRQAADPELLGGLCQTLRFGPMTRRRLFDAAGVPDILPTHSEPA
>NZ_CP052863.1|WP_005408165.1|839219_839774_-|NUDIX-hydrolase
MSQRNTEAPRVVYEGKYQRMLVRGTWEYSERTHAGGLAAIIIAVTPEDKVLFVEQFRVPLQAPTIEMPAGLVGDIHAGESIEVSAVRELEEETGWTADHAEVLLIGPTSSGASSEKIAFVRATGLRRVGEGGGDDSEDIIVHEIPRSEAAAWLVQKMGEGYELDAKLWAGLWMIEHHLDGRPRG
>NZ_CP052863.1|WP_024957742.1|848649_849069_-|hypothetical-protein
MSSNAARARTVTWLWPIMLLLGLVVAPLAWMVLALMTGRQVGWMAVLTALELVFMLRMGTLGPGRLRIVLVVVGTLLVAAVANWTIASAWMGGSIGLDLWDATMRMGPHLAWTLITLANGAVEWLWLALGLAVGAWLAR
>NZ_CP052863.1|WP_012479222.1|849191_849743_+|putative-Fe-S-cluster-assembly-protein-SufT
MYSRSSEPVHFERDCEAVMVPQGDTVTLPAGSYGYITQALGGSYSVFVEGNLFRIAGKDGDAIGKEAPAPLELPADATDEQVEQLVWQQLRTCFDPEIPVNIVELGLVYEVEIKHLDEGQREIDVKMTLTAPGCGMGDILVDDVRSKLEMIPTVAEADVDLVFDPPWNQHMMSEAARLETGML
>NZ_CP052863.1|WP_005412326.1|849802_850897_+|branched-chain-amino-acid-aminotransferase
MSQSIPSFAVTRSDHPRSAEERAKILEKPGFGLHFTDHMVEVRWDKDAGWHNANVRAYGPLQLDPAAAVLHYGQEIFEGIKAYRHADGSIWTFRPDANGRRLQRSAQRLALPELPVEIFVESLKQLIAVDSDWVPSADESSLYFRPFMIGDEAFLGVRGAHKAGYYVIASPAGPYFAKGVAPVSIWLSTEYARAAKGGTGAAKCGGNYAASLLPQQKAQAQGCSQVLFLDPVEGKYLEELGGMNVFLVYKDGTLVTPELSGSILEGITRESILQLARDRGMKVEERKVSIDEWKDGVASGAISEVFACGTAAVVTPIGQLKGEGFSVGDINAPAGEVTMSLRKELTDIQYGRLPDRHNWLVKLG
>NZ_CP052863.1|WP_169448144.1|851348_853091_+|S8-family-serine-peptidase
MSQVTQPRVRRVWVVLGASVLSSLLLATPALAGDVQLSGLQSAPTHQRFIVKYRDGSAAVANTTALASSLKTAAAGLASSQGRALGLQQVRKLAVGPTLVKTDRPLDQAESELLMRKLAADPNVEYVEVDQIMRATLTPNDTRFSEQWGFGTSNAGINIRPAWDKATGTGVVVAVIDTGITNHADLNANILPGYDFISDAAMARDGGGRDNNPNDEGDWYGANECGSGIPASNSSWHGTHVAGTVAAVTNNSTGVAGTAFNAKVVPVRVLGKCGGYTSDIADAIVWASGGTVSGVPANANPAEVINLSLGGGGSCSTTYQNAINGAVGRGTTVVVAAGNSNTNVSSSVPANCPNVIAVAATTSAGARASFSNYGTGIDISAPGQSILSTLNTGTTTPGSATYASYNGTSMAAPHVAGVVALMQSVAPSPLSPAQVESIIKSTARPLPGACSGGCGAGIIDANAAVAAAINGGGNPNPGGNVLQNNVPVTGLGAATGAELNYTVAVPAGSTQLRVAISGGSGDADLYVRQGSAPTDTTYTCRPYLSGNGETCTINSPAAGTWYVRVKAYSTFSGLTLNAQY
>NZ_CP052863.1|WP_010481766.1|853211_853697_-|asparaginase
MEELLVVTTGGTIDKIYFDDKSDYQIGDPQIGMILRELGVTFRFNVIPILRKDSLHINDEDRELIRATIAAQPTRHVLVTHGTDSMVQTGKVLATIPDKTIVMTGALSPARFRGSDAEFNIGCAIGAVQSLPSGVYIAMNGRIFDPQHVRKNVAANRFESV
>NZ_CP052863.1|WP_169448145.1|853776_854112_-|DUF2069-domain-containing-protein
MSRPPRTLLLLALMGLAALFAGWFINDKHWLATQLVFTAPPLALAFALRLGWRKAGFWASVLALGWFSHGVMSAWSHPETRWLALIEIALALLVIFSASLPGLRARFGKRR
>NZ_CP052863.1|WP_005408181.1|854108_854702_-|NAD(P)H:quinone-oxidoreductase
MGEILVLYYSRGGSVARLARQIARGIGEVPGMSARLRTVPPVAAVTQTAQPPVPDDGAPYVSVQDLVECQGLLLGSPTRFGNMAAPVKHFLDGLGAEWVNGTLSGKPAGVFTSTASMHGGQESTLLSMQVPLLHHGCVIVGIPFTEPALSHTTSGGTPYGASHVAGAADDPQPTDDEAVLARALGRRVADIAQRLAR
>NZ_CP052863.1|WP_005408182.1|854779_856054_+|YihY-family-inner-membrane-protein
MEPLDTLNLWMERARDRARAISFGRFLWHRFLDDRLFQAAAALAYTTVFALVPLAIVVFGVLSAFPVFDRWSDQLSDYVFSNFVPNAARAAEGYLRQFSASAGQLTAAGFIALVVSLLITLNSVEETFNQIWRVGSTRPKLTRFLVYWTVLTLGAMLAAASLAVSARVFAMPLFGTQEGRWLAELALRLAPILIEFVCITLMFRVVPHHTVKWRHAVPGAILAAVILELVKWGIGAYLGSFQSYQKLYGTVAFVPILLLWIYLCWVAVLLGASLSSSMAAFRYQPVELRLPQGYEFYGLLRLLGRFHHARAKGKGLADDEILRLEPMLTDSLLQDLACNLQEIGLLRRDERGEWLLSRDLDQVSLADLYECTQLRIPVAEQHLPYRDDSLGRAALAALDDLRLPLRERLKRKVSDIYTDSGDMP
>NZ_CP052863.1|WP_169448146.1|856050_856620_+|redoxin-domain-containing-protein
MTRKTPLLLPLALLLALSACKPAQEPTPASSQPPAQAPTPTAPAPVEETPAERTTAEFPTLKMKAVDGSDYDLAAHRGKWVVVNFWATWCAPCRKEMPELSALHAMRSNIEVVGLAYEDIEVPEMRSFLTKHPVTYPIVIVDPFDPPADFATPRGLPLTHLLDPQGKLAHTFLGPVTAADIEKQIAAAK
>NZ_CP052863.1|WP_005408184.1|857227_858010_-|polyphosphate-kinase-2
MAKLKRKDYDELLLPLQLELTAMARWVQHSGQRLLVLFEGRDTAGKGGAIQAISQHLNPRQCRVVALPKPTDREATQWYFQRYASHLPAAGEIVLMDRSWYNRAGVERVMGYCSETEYQQFLRQAPVFEQLLVDDGILLFKYWLCVDQEQQEKRFAERHLDPLKGWKLSPVDLKSRSKYSAYTEAREAMLRATHREAAPWTLVDFNDQRLGRLTLVRNLLDRLPDTRVDAPLPELPKLKGKLHREHYDVLKPIEDFPVED

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Crispr_ID: NZ_CP052863_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_5

1466677-1466815

Orphan

Consensus_repeat	Method
GGTAGATCCACGCCATGCGTGGATGGAGGCGGTGCCGACCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_5

>merge|NZ_CP052863|5|1466677-1466815|CRISPRCasFinder
GGTAGATCCACGCCATGCGTGGATGGAGGCGGTGCCGACCAACGGTCGGCCCCACCAAAGGTCAGAACCCACCAAAGGTCAGTACCCACCAGAGGTCGGTAGATCCACGCCATGCGTGGATGAAGGCGGTGCCGACCAA

>NZ_CP052863|5|5|1466677-1466815|CRISPRCasFinder
GGTAGATCCACGCCATGCGTGGATGGAGGCGGTGCCGACCAA	CGGTCGGCCCCACCAAAGGTCAGAACCCACCAAAGGTCAGTACCCACCAGAGGTC
GGTAGATCCACGCCATGCGTGGATGAAGGCGGTGCCGACCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_049451973.1\|1471548_1472907_+\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_CP052863.1\|WP_005410522.1\|1460732_1460993_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP052863.1\|WP_169448290.1\|1470301_1471552_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP052863.1\|WP_076738311.1\|1473972_1474281_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
NZ_CP052863.1\|WP_169448288.1\|1461029_1462316_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|182626
NZ_CP052863.1\|WP_005410527.1\|1455810_1457256_+\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NZ_CP052863.1\|WP_049433610.1\|1462854_1463400_-\|WG-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379719
NZ_CP052863.1\|WP_005414121.1\|1457297_1457885_-\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|235377
NZ_CP052863.1\|WP_088435887.1\|1466914_1467688_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP052863.1\|WP_005410524.1\|1459408_1459783_+\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|378240
NZ_CP052863.1\|WP_088435890.1\|1475099_1476683_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NZ_CP052863.1\|WP_049451971.1\|1469053_1470298_+\|DUF418-domain-containing-protein	unknown	unknown	gnl\|CDD\|225193
NZ_CP052863.1\|WP_005410518.1\|1465256_1466591_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP052863.1\|WP_005410509.1\|1474374_1475049_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP052863.1\|WP_005410516.1\|1467819_1468398_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP052863.1\|WP_010482989.1\|1468471_1468954_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP052863.1\|WP_169448287.1\|1457953_1459321_+\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922
NZ_CP052863.1\|WP_049451974.1\|1473025_1473946_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP052863.1\|WP_169448289.1\|1463396_1465103_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NZ_CP052863.1\|WP_005410523.1\|1459864_1460743_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|182567

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_049451973.1\|1471548_1472907_+\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_CP052863.1\|WP_005410522.1\|1460732_1460993_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	1.00119e-21
NZ_CP052863.1\|WP_169448290.1\|1470301_1471552_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	8.11828e-74
NZ_CP052863.1\|WP_076738311.1\|1473972_1474281_+\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.23251e-21
NZ_CP052863.1\|WP_169448288.1\|1461029_1462316_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|182626	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.	2.13039e-106
NZ_CP052863.1\|WP_005410527.1\|1455810_1457256_+\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NZ_CP052863.1\|WP_049433610.1\|1462854_1463400_-\|WG-repeat-containing-protein	gnl\|CDD\|379719	pfam14903, WG_beta_rep, WG containing repeat. This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).	0.000103149
NZ_CP052863.1\|WP_005414121.1\|1457297_1457885_-\|ribosome-associated-protein	gnl\|CDD\|235377	PRK05255, PRK05255, ribosome-associated protein.	5.05049e-69
NZ_CP052863.1\|WP_088435887.1\|1466914_1467688_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	4.8892e-41
NZ_CP052863.1\|WP_005410524.1\|1459408_1459783_+\|DUF4870-domain-containing-protein	gnl\|CDD\|378240	pfam09685, DUF4870, Domain of unknown function (DUF4870).	4.886e-34
NZ_CP052863.1\|WP_088435890.1\|1475099_1476683_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	4.04967e-103
NZ_CP052863.1\|WP_049451971.1\|1469053_1470298_+\|DUF418-domain-containing-protein	gnl\|CDD\|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	1.8119e-87
NZ_CP052863.1\|WP_005410518.1\|1465256_1466591_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.9095e-115
NZ_CP052863.1\|WP_005410509.1\|1474374_1475049_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.36451e-38
NZ_CP052863.1\|WP_005410516.1\|1467819_1468398_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.14677e-40
NZ_CP052863.1\|WP_010482989.1\|1468471_1468954_+\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.07485e-54
NZ_CP052863.1\|WP_169448287.1\|1457953_1459321_+\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	1.72337e-169
NZ_CP052863.1\|WP_049451974.1\|1473025_1473946_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.54094e-10
NZ_CP052863.1\|WP_169448289.1\|1463396_1465103_-\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	3.40055e-131
NZ_CP052863.1\|WP_005410523.1\|1459864_1460743_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|182567	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase.	1.10199e-95

>NZ_CP052863.1|WP_005410518.1|1465256_1466591_+|dicarboxylate/amino-acid:cation-symporter
MKLVSAWLRIPFWQRVVGGFVLGALAGWALGPAAETWFGPLGELYVTLIKMIAVPLVFFAVINAISSLHGQKSVAALSGRTFLWFVITAALAVCVGLGVGTVLQPGAGGLQLTMASNYVPREVPSVVQVLLDVVPANVFYALSGIGTKVNAAGETVLAAGRGSILPVIFFAGLVGFAIVKLGEKVTEARKLVGQMSDIMIQVTRFVLEVTPIGTFGLIAGLVGSYGFEKLLPLGHFVLALYVACALHIVVVYSALLLAHGLNPLKFFRGAAPGMQVAFVSSSSFAAMPVALRSITHNLGVNKDYGSFAVPLGASIKMDGCGAIYPALCAVFIAQYSGVPLTPEQYVVVLIASVLGSFGTAGVPGTAVIMATVVLSAANLPLETIGYLYAIDRILDMMRTMTNVTGQMLVPVIVAKETGLLDQAVYDNPSSNVGVDDPDPTPPRG
>NZ_CP052863.1|WP_169448289.1|1463396_1465103_-|alkaline-phosphatase
MRRSVSLLAACATTLLLGACASTPPATAPAGLKVAVDPVAHPAGETPQWWYRSGAAQAAANGAMSGKAKNVILFLGDGMSLTTVAASRIYEGQQKGGSGEENLLSWERFPATAFSKTYNTDSQTPDSAGTMTAITTGVKTHMGAIGVSAGSRTDCADSLSKGLLTWLQLADSAGLATGVVSTARLTHATPAATYAHSPERNWENDTDLTEAAKAAGCKDIAQQLLSTSRYGRGPLVALGGGRGEFTTVEERDPEYDDKVGQRLDGRSLVREWQQAHPQGAYVWNSKQLAAAANAPAILGLFEPDHMRYEYERPQDPGGEPSLAELTAAAIKNLSKHQEGYVLMIEGARIDHANHSGNAYRALTETVALSDAVRVANELTSADDTLIIVTADHSHTLNFVGYPARGNPILGKVKDKGGEDGAGKLDYALDGTGQPYTTLSYANGPGHTGSSNQQPAGPKRYPHNPSSFEPANGRPNLREVDTEHPDYMQEALVPMKSESHGGEDVGIWARGPGSKAIRGTLEQNAIYHMIVQATPALRERLCQAGTCDHKGVPVQLPAPTAFERKAEAK
>NZ_CP052863.1|WP_049433610.1|1462854_1463400_-|WG-repeat-containing-protein
MIARQARPDAASGRFARSLALLGMLVSATAAAQAPACKLLTDEHGLWPLPNCEVIDHRPKISADTLKDLNYDDHGLAVVYADQGFHYVDRKGRSLPVLTWDNGPETPQEGLLRARVGNRVGYFDLTFRQVVPGTFDFAWPFQDGVAEVCNGCRRGTPDADGHTPMEGGEWFRIDRSGRRVK
>NZ_CP052863.1|WP_169448288.1|1461029_1462316_-|tRNA-lysidine(34)-synthetase-TilS
MTAFPALVPLDAPLLVGYSGGVDSTVLLHWLWRCAQTSGTALRAVHVHHGLQPDADDWVLHCQQQCDAWGIELAVHRVQVENGTGLGTEGAARQARRAAFAAELRDGETLALAQHQDDQAETFLLRALRASGVDGLAGMSTHSRLGEHPLWRPLLAVPRSALLDYARQHALRWIEDPSNAEDHADRNFLRLQVLPLLRQRWPHAAAALAGSATHCRQTRELLDEEDAELIAHLEVAPRVLSLELLRQMSPRRAARVLRAWVLGHDAAPLPASVLQQALEELLPADTDRQARVRWQQHVIQQWRDHAYLLPARLPSLPLDWQAVWDGRAPLPLPDGGQLSLLGAGAFEQPLQVRARVGGERILLPGRQHSHALKDCLQREHLAPWRRAQLPLIFDGPQLLAAADLVIAAPLQAWLQAHDAQLQWRPGGW
>NZ_CP052863.1|WP_005410522.1|1460732_1460993_-|exodeoxyribonuclease-VII-small-subunit
MAKKSPENASPVAQFEQSLESLEQLVEQMETGELSLEASLSAYERGVGLYRQCQQALEQAELRVRLLSDPAQPEASEPFDPPSHDG
>NZ_CP052863.1|WP_005410523.1|1459864_1460743_-|polyprenyl-synthetase-family-protein
MTAEVLFARWRDRIESQLDAALPSPAEAPQRLHQAMRYSVLGGGKRMRPLLVYASGHLFGAQPESLDAAAMSVELIHAYSLVHDDLPAMDDDALRRGKPTTHIAFDEATAILAGDALQTRAFGLLADAPLPATLRVACLQTLAHASGASGMCGGQALDIDATGQQQTLAALTRMHALKTGALIRAAVRMGALCGQAHEPQLAQLDSFADALGLAFQVRDDILDVEASSEQLGKTAGKDQAQDKSTFPALLGMDGAKAQLHELAARMQSILAGYGEEADALRALATLAVERDH
>NZ_CP052863.1|WP_005410524.1|1459408_1459783_+|DUF4870-domain-containing-protein
MSEFDNVPPPPPATADVPADQRTMALAAHLLGIFTGFIGALIIWLINKDDAGKAFVTDQAKEALNFQITVTIAMVISMILTIVIIGVFLAPIVGIISLVFSIIAAVKANNGEAYRYPFALRLIK
>NZ_CP052863.1|WP_169448287.1|1457953_1459321_+|metalloprotease-PmbA
MNVIAPEAAVGDDSPARLERLADLSQQLLDRARALGASQAEVSCSEDRGLEVNVRLGEVETVQSTRDRGIAVTVYFGQRKGSASTGDLNEASLAATVEQACAIARHTEDDAAAGLAEAALMATHFPDLDGWHPWALQADEAVDLALACEAAGREADAQIRNSDGASVSSMQSLSVYANSHGFIGRERGTHHSVGCALIAGQGDGMQRDGWYTSALAREDLEDVGLVGRRAAEHTVARLQPRSLATGSMPVLFAPEVARSLVGHLLSAVSGGALYRQASFLLDSVGQQLFPDWMQIEELPHLRRGLRSAAFDGDGVATRASALVRDGVLQRYVLGSYSARKLGLQTTANAGGVHNLQLAANAGPLQDIARQMGDGLLVTELMGQGVNGVTGDYSRGAGGFRVENGEIQYPVDGITIAGNLREMFSSIEAVGSDVDPRSHIRTGSILLGRMTIAGND
>NZ_CP052863.1|WP_005414121.1|1457297_1457885_-|ribosome-associated-protein
MRGRDEETGEFHDKSRSQNRRDALDVLALGEKLVSLTPAQLARLPIPEDLLPHIAECKRITAHIAHKRQLAFLAKHMRREEEATLDAIRDALDANSETGRREVAMMHRVEDWRERLLAEGDKALAALLDDYPQADRQQLRTLVRNAQAEKAKNKPPRAYREIYQVLRALMLPAALGLKASAEDAGHVEADEADED
>NZ_CP052863.1|WP_005410527.1|1455810_1457256_+|metalloprotease-TldD
MTDIALTLAQDRLLRPGGLDTDGLERTFGQLLGPGVDFGDLYFQHARRESWSVEDGIVKDGAHSIEQGVGVRAMSGEKTGFAYSDDIHADALLAAAQSARAISREGGAQSGRSLLRGNSRALYPALDPIDGVGNEAKVEVLKRLDGYLRAADPRVKQVMVSLSGGVDTVLIARSDGVLGADVRPLVRLNVQVIVEHNGRRESGYAGGGGRYGYGELFADGRPEAFAREALRQALVNLDAVPAPAGVMPVVLGPGWPGVLLHEAVGHGLEGDFNRKGTSVYAGRIGERVAAPGVTIVDDGTLDGRRGSLNIDDEGHPSQCTTLIEDGILVGYMQDSLNARLMGMAPTGNGRRESFAHLTMPRMTNTYMRAGQHDPQEMIRSVKKGLYAVNFGGGQVDITSGKYVFSATEAYLIEDGRITAPVKGATLIGNGPETMQKVRMVGNDLALDEGVGICGKDGQSVPVGVGQPSLLIEGITVGGTQA
>NZ_CP052863.1|WP_088435887.1|1466914_1467688_-|C40-family-peptidase
MTTDDLKSEGQTSVSSRSARPLLLGLALCLTSLPAWSQTSPNRSDVTPAPVAESTARPAAKAEAAATQRSRVDAAASATLAALLPHLAANDTIPLMDRSAVVAGDLSRLLANYDTSSAANGSVVGTAADNGKVQSLLRRAMTLLGTPYRWGGSNPDSGFDCSGLVGYVFRSALGIELPRVSREMAHDDNAELINDRTALAAGDLVFFGRKGRVDHVGIYVGDGRFLHAPSSGKDVRVDTLLSGYWGNKFMQARRVDL
>NZ_CP052863.1|WP_005410516.1|1467819_1468398_-|C40-family-peptidase
MTANPKVAHYPENMHITPVSSGLRRLLAPALLLALPVLMTACGGGKATRPAPPPPTANWPKTVPDNPEAANSVLMRAISLVGTPYRYGGNTPDSGFDCSGLVAYVYREMLDLKLPRTSRDLAAVQGPKIDPQRLATGDLVFFGSRGSVTHVGIYVGEGRFVHAPSTGGTVRLDSLSGPYWKDHYTGAKRVLR
>NZ_CP052863.1|WP_010482989.1|1468471_1468954_+|peptidylprolyl-isomerase
MKIEKDRVVRFHYTVSEVGQEPIESSKDRGEPLAILIGHGNIIPGLENAMMDKEAGATFSVDVTAADAYGERREGLSQRVPKKHFGNTKLAPGQQVVLQTNFGPRAVTVQKVGMSVVDVDLNHPMAGKDLHFDVEIVDVREAGKEEIDHGHVHGDGGHHH
>NZ_CP052863.1|WP_049451971.1|1469053_1470298_+|DUF418-domain-containing-protein
MADLPDGRPVNAASPSLQPVASGERIAVLDVLRGAALLGILLMNIEAFSGPLDLAFTGIDVHWQGIDYWADAFVYVFVQGKFFTLFSLLFGAGFAVMAQRAEAAGRDFTPFYLRRSAGLLLIGLCHALLFWSGDILVMYALVSLPLLACREAPRSWLPWMGVTVYLGGVAMMLLVGAMVSMASAEDVRKMLADAQQSIDLQRLVYGQGSWMQANAQRLSEFGTSMGAMLITGPEVLGMFLIGSWFAGSGALATPDRFPRLYAVLRWGALPFGLLVTLLGVAWKPYLAPGAYDLPVTAAMALVTIGGLPMCLGYLAWIVHWRARLGWLAPVGRMALTHYLGQSLLCTWLFYHYGLGAFETMPRSVQLMFALLLFTVQVGISHVWLRRFRFGPMEWLWRAMTYRQWPPMRREAGQG
>NZ_CP052863.1|WP_169448290.1|1470301_1471552_+|FAD-dependent-oxidoreductase
MQGAREDVIVVGAGAIGLAAALALRAQGRQVRVIDRGRVGGATSHGNCGTITPSHAPPLAAPGVPLRALRWMLDPRAPLYVRTRLDPALWRWLLQFGARCNARDWLHATRARGALLNDSRLRLAQWVQTHALDCEFEARGLDYVFGDARNFDHHAAECEALNAQGIASARIDGTDYARDNPAFHDRLAGAIHFPGDAQLRPDRYTAELARVLRAQGVVIEEQSDVEDFSADAQGVRVRVGERMLLARELVLATGPWSPRWARQLDLRVPIQPGKGYSLTWSRPAQVPQRPVVLKDHSVFVIAWREALRLGGTMEFAGADPQLRTTRLQALQQAADQYLRAPRGARLQEQWCGWRPMSVDDVPFIGRAPAHPHVWLAAGHGMLGISMSAGTGQLIADLVCGRTPAIDPAPYRPERFR
>NZ_CP052863.1|WP_049451973.1|1471548_1472907_+|glutathione-disulfide-reductase
MSTAPYDYDLIVLGGGSAGLAGAIRAAQHGKRVALLEPGELGGTCVNVGCVPKKAMWLAADLHERIGLASAMGFDVKARPALSWKELVIHRQAYISNIHTSYHKRLDETGVVRIPARGHLLDAHTVACSDGVRYSAEHILIATGAHPLRPDIPGAELGLVSDDFFDLRAAPAEVAIIGGGYIAVELAGLLQALGSKVSLLVRGQRLLDRFDYELTDQLAENLKQQGVRIHFGYRLRELQRDGERVRAFGHDGPLDSVFDAVFFATGRRGNSRDLGLEALGIGIGEHQQVQVDEWQTTCVPSVHAVGDIAGKVGLTPVAVAASRRLMDRLFGGRPQSKMDYENVASVVFSHPPLGAVGMSEEEARARFDQVTVYHSRFRPMLQGLANGTQRSLFKMVCAGPEERVVGIHLLGEAADEILQGFAVAVKMGATKAQFDDTVAIHPTSAEEVVLMR
>NZ_CP052863.1|WP_049451974.1|1473025_1473946_+|DMT-family-transporter
MSSPASRIATASPRIALGGIGLAAIGAIAASGKAIIVKLGLRHGVDATTLLALRMLMALPLFVLMALWAARRAEPLSWADRARVLWLGFTGYYLSSLLDFQGLQYISVTLERLILYLNPTLVLLINVLLARQRPGRWQIGALVLSYLGVLLAFGHDLQREGGQIIVGSLLVLGSALSYALYLFGSGQVVARIGAVRLTAYASCVASVLVLLHFAVTHPLPFLWQAPAPVQWLSLVNATVCTVLPVLAIMLAVQRVGSSLAAQVGMLGPVSTIVMSLWLLDEPMGPAQIAGTVLVLIGVLLVTRLRR
>NZ_CP052863.1|WP_076738311.1|1473972_1474281_+|MGMT-family-protein
MAVIRAIPVGQVMGYGQVAMRAGLPGRARLTARILGQNDDPDLPWHRVLRSDGRIAMEEGSAGWREQSQRLRAEGVVVENGRVRMPAADPAAALDAAVWGPG
>NZ_CP052863.1|WP_005410509.1|1474374_1475049_+|rhomboid-family-intramembrane-serine-protease
MFPRLPTVTKALLIANAILFLLQQPFLLGMQTFEPFMLQPLQQGFDAFSPGGNFQPWQLLTYGFLHGSFGHLFFNMLAVFMFGAPLEQTWGEKRFLLYYLVCVAGAGVCQLLVGTLLENPATVLGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVILFGVGELVLGMTGWQPGVAHFAHLGGMLFGWLLIRYWRGQPPFNKRRPPGPPKRPNHLRSVK
>NZ_CP052863.1|WP_088435890.1|1475099_1476683_-|NAD(P)/FAD-dependent-oxidoreductase
MSWDAIIIGGGHNGLVCAAYLAKAGKNVLVLERRGVLGGAAVTEEFHPGFRNSVASYTVSLLQPKVIEDLQLHAHGMRIVTRPANNFLPLPDDRYLLSAPGRTQAEVAGFSARDAQRLPAYEARLEIFADVLRAWALRAPPDIGVAGGWRGLPALWQMGKLGRELAALDAPLRQELLDLFTLSAAEYLDRWFESEPIKALFGFDGIVGNYASPYTPGSAYVLLHHVFGQCNGVKGAWGHAMGGMGAISQAIASAAREAGAELRVDAGVRRVLTEQGRAVGVELANGETLRARAVVANVNPKLLYEQLLEPAQVPAATRERMTNWRCGSGTFRMNVALSRLPEFRALPGPGDHLSAGIIMAPSLDYMDRAWLDARRDGWSREPIVEMLIPSTLDDSLAPPGQHVASLFCQHVAPVLPDGRHWDDHRETVADLMIATVERYAPGFTASVLGRQVLSPLDLERTFGLVGGDIFHGALSANQLFSARPMVGQAGYRGALPGLYLCGSGTHPGGGVTGAPGHNAAQVVLRDL

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Crispr_ID: NZ_CP052863_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_6

1632187-1632421

Orphan

Consensus_repeat	Method
CCAAGCCGGTGGCGAAGAAGGCAGCAACCAAGCCCGCGC	PILER-CR
GGTGAAGAAGGCTGCCGCCAAGCC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP052863_6

>merge|NZ_CP052863|6|1632187-1632421|PILER-CR,CRISPRCasFinder
CCAAGCCGGTGGCGAAGAAGGCTGCTGCGCCCGCCAAGGCCAAGCCTGCCGCTGCCAGCAAGAAGGCGCCGGTGGTGAAGAAGGCCGCCAGCAAGGCCGCGCCGGTGAAGAAGGCTGCCGCCAAGCCAGTGGCGAAGAAGGCAGCAACCAAGCCGGCGCCGAAGGCGGTGGTGAAGAAGGCTGCAGCCAAGCCGGTCGCCAAGCCCGCAGCAAAGAAGGTCGCTGCGGCCAAGCC

>NZ_CP052863|6|1|1632187-1632345|PILER-CR
CCAAGCCGGTGGCGAAGAAGGCTGCTGCGCCCGCCAAGG	CCAAGCCTGCCGCTGCCAGCAAGAAGGCGCCGGTGGTGAAGAAGG
CCGCCAGCAAGGCCGCGCCGGTGAAGAAGGCTGCCGCCA	AGCCAGTGGCGAAGAAGG
CAGCAACCAAGCCGGCGC

>NZ_CP052863|6|6|1632197-1632421|CRISPRCasFinder
GGCGAAGAAGGCTGCTGCGCCCGC	CAAGGCCAAGCCTGCCGCTGCCAGCAAGAAGGCGCCGGT
GGTGAAGAAGGCCGCCAGCAAGGC	CGCGCCGGTGAAGAAGGCTGCCGCCAAGCCAGT
GGCGAAGAAGGCAGCAACCAAGCC	GGCGCCGAAGGCGGT
GGTGAAGAAGGCTGCAGCCAAGCC	GGTCGCCAAGCCCGCAGC
AAAGAAGGTCGCTGCGGCCAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_005410380.1\|1625680_1627024_+\|TRZ/ATZ-family-hydrolase	unknown	unknown	gnl\|CDD\|236366
NZ_CP052863.1\|WP_049451716.1\|1636918_1637482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183072
NZ_CP052863.1\|WP_049451657.1\|1627049_1627766_+\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_CP052863.1\|WP_049451661.1\|1628469_1629174_+\|phytoene-synthase	unknown	unknown	gnl\|CDD\|224478
NZ_CP052863.1\|WP_088435928.1\|1633603_1634851_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP052863.1\|WP_049451659.1\|1627762_1628458_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237311
NZ_CP052863.1\|WP_169448327.1\|1623778_1624795_-\|EF-P-beta-lysylation-protein-EpmB	unknown	unknown	gnl\|CDD\|163533
NZ_CP052863.1\|WP_005410381.1\|1624913_1625480_+\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP052863.1\|WP_049451671.1\|1641408_1642737_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|235306
NZ_CP052863.1\|WP_049451674.1\|1642740_1643343_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP052863.1\|WP_005410367.1\|1640294_1641383_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|181544
NZ_CP052863.1\|WP_169448329.1\|1643339_1644293_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|273832
NZ_CP052863.1\|WP_005414016.1\|1631475_1631730_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|178815
NZ_CP052863.1\|WP_005410369.1\|1637816_1638827_+\|N-acetylornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235304
NZ_CP052863.1\|WP_169448328.1\|1635354_1636731_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP052863.1\|WP_049451665.1\|1630127_1631474_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|181716
NZ_CP052863.1\|WP_164222840.1\|1629279_1630128_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP052863.1\|WP_005410368.1\|1638946_1640143_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235305
NZ_CP052863.1\|WP_005410372.1\|1634847_1635300_-\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NZ_CP052863.1\|WP_169448326.1\|1621578_1623705_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_005410380.1\|1625680_1627024_+\|TRZ/ATZ-family-hydrolase	gnl\|CDD\|236366	PRK09045, PRK09045, TRZ/ATZ family hydrolase.	0
NZ_CP052863.1\|WP_049451716.1\|1636918_1637482_+\|hypothetical-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	0.00359665
NZ_CP052863.1\|WP_049451657.1\|1627049_1627766_+\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	8.73805e-147
NZ_CP052863.1\|WP_049451661.1\|1628469_1629174_+\|phytoene-synthase	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	1.04475e-13
NZ_CP052863.1\|WP_088435928.1\|1633603_1634851_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.52331e-62
NZ_CP052863.1\|WP_049451659.1\|1627762_1628458_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237311	PRK13226, PRK13226, phosphoglycolate phosphatase; Provisional.	2.9864e-143
NZ_CP052863.1\|WP_169448327.1\|1623778_1624795_-\|EF-P-beta-lysylation-protein-EpmB	gnl\|CDD\|163533	TIGR03821, EFP_modif_epmB, EF-P beta-lysylation protein EpmB. Members of this radical SAM protein subfamily, including yjeK in E. coli, form a distinctive clade, homologous to lysine-2,3-aminomutase of Bacillus, Clostridium, and methanogenic archaea. Members of this family are found in E. coli, Buchnera, Yersinia, etc. The gene symbol is now reassigned as EpmB (Elongation factor P Modification B). [Protein fate, Protein modification and repair].	1.31372e-165
NZ_CP052863.1\|WP_005410381.1\|1624913_1625480_+\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	2.00633e-99
NZ_CP052863.1\|WP_049451671.1\|1641408_1642737_+\|acetylglutamate-kinase	gnl\|CDD\|235306	PRK04531, PRK04531, acetylglutamate kinase; Provisional.	0
NZ_CP052863.1\|WP_049451674.1\|1642740_1643343_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.44115e-22
NZ_CP052863.1\|WP_005410367.1\|1640294_1641383_+\|acetylornithine-deacetylase	gnl\|CDD\|181544	PRK08737, PRK08737, acetylornithine deacetylase; Provisional.	0
NZ_CP052863.1\|WP_169448329.1\|1643339_1644293_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|273832	TIGR01850, N-acetyl-gamma-glutamyl-phosphate_reductase, N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. [Amino acid biosynthesis, Glutamate family].	4.33038e-127
NZ_CP052863.1\|WP_005414016.1\|1631475_1631730_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|178815	PRK00041, PRK00041, hypothetical protein; Validated.	4.49521e-41
NZ_CP052863.1\|WP_005410369.1\|1637816_1638827_+\|N-acetylornithine-carbamoyltransferase	gnl\|CDD\|235304	PRK04523, PRK04523, N-acetylornithine carbamoyltransferase; Reviewed.	0
NZ_CP052863.1\|WP_169448328.1\|1635354_1636731_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP052863.1\|WP_049451665.1\|1630127_1631474_-\|dihydroorotase	gnl\|CDD\|181716	PRK09236, PRK09236, dihydroorotase; Reviewed.	0
NZ_CP052863.1\|WP_164222840.1\|1629279_1630128_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.71143e-38
NZ_CP052863.1\|WP_005410368.1\|1638946_1640143_+\|argininosuccinate-synthase	gnl\|CDD\|235305	PRK04527, PRK04527, argininosuccinate synthase; Provisional.	0
NZ_CP052863.1\|WP_005410372.1\|1634847_1635300_-\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	5.69703e-59
NZ_CP052863.1\|WP_169448326.1\|1621578_1623705_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	9.62712e-104

>NZ_CP052863.1|WP_005414016.1|1631475_1631730_-|membrane-protein-insertion-efficiency-factor-YidD
MISRLLIALLRFYKRFISPLLGPRCRFVPSCSEYAMEAISRHGPLRGSWLAARRLGRCHPFHPGGFDPVPESPNAPSCRCTGKH
>NZ_CP052863.1|WP_049451665.1|1630127_1631474_-|dihydroorotase
MSSTLITNARMVNEGRTFDGDLRIENGRIAQIGSGLAPRDGEQVVDAAGRWLLPGMIDDQVHFREPGLTHKGDIASESAAAVAGGLTSFMDMPNTNPPTLDSTILEAKYELARGRAWANYGFYHGASNDNLDAIRALDPKKAPGVKVFMGASTGNMLVDNPETLDAIFRECPTPIITHCEDTPMIDANLKAFQERYGDALTPDMHPDIRSREACIKSTRLAMSLARKHGTRLHVLHISTADELALFEKGPLIRADGSRKQITAETCVHFLHFARPDYATKGNLIKCNPAIKEVSDREAITAALADDVLDVLATDHAPHTWEEKQKPYAQAPSGLPLVQYALVAALERVHEGKLTREQVVQKFAHAPAQLFDVEERGFLREGYFADLVLVEDVPFTVKREDVLSKCGWSPFEGTTFRSRVASTWVNGQLVWDGSKLVGEPAGQRMTYDR
>NZ_CP052863.1|WP_164222840.1|1629279_1630128_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MRAALFTGALLLAAPLLSVPSAHAQDAIGSLIDSRVVFPASASQGALVIGKVPAGSRVQYAGRQLRVSGYGSVVFGIGRDEKGPLRVQVQRPDGGSETATIVVTPRDWPTERVNGVPPKTVNPPPAIAERIKREQAQVTAARARDDDRTDFTQTFIWPVQGRISGRFGNARVYNGQPGAGHSGMDIAVPTGTPVKAPAAGIVTFAGPDLYLTGGTLLLDHGFGVSSNFLHLSRIDVKVGDRVEQGQVIAAVGATGRATGPHLHWGMNWFDTRIDPLLVLERK
>NZ_CP052863.1|WP_049451661.1|1628469_1629174_+|phytoene-synthase
MSSTALDSFLDKWRSRWPEWSVAAPFVAESQRELAEAWFALLQEFDDMLNTGGDPLPADAKLAWWGEELRSWAGHRSRHPLGRLLEPVRAPWAQLAEALPDLVEARTVALDAASAERALANYAEAVAAVEAALFADKPRTGAGRAVQLQTLAQRLQDAGVAGVPRSLLDGDASTAAQRWAQHLLKGWGSRVPGPRPRRVWSSLARARVAAQAAGKPIEATPVRTLLRVWWAARG
>NZ_CP052863.1|WP_049451659.1|1627762_1628458_+|phosphoglycolate-phosphatase
MTSARFPRAVLFDLDGTLLDSAPDFVATCNAMLAERGRAPIDSAALRPVVSKGSRAMVSAAFPDLDAAARDALIPEFLQRYEALIGQHAVLFDGVAGMLAALDEAGTVWGIVTNKPEYLARLILPQHGWQQRCAVLVGGDSLAERKPHPLPLLHAAQAIGIAAEDCVYVGDDERDIIAARAAAMPSVAALWGYRLHSDDPLAWQADVLVENAELLQLASLWPTRPAAPAQP
>NZ_CP052863.1|WP_049451657.1|1627049_1627766_+|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MTAPHASSNFDQAELDKFAALANRWWDADGPQKPLHALNPVRLKYVADRVPLRGARVLDIGCGGGLLSEALAQAGADVTAIDLAPELVKVARLHALESGAKVDYRVQAAEDLAAEQPGSFDVVTCMEMLEHVPDPGAIIEACKRLLKPGGHLFLSTINRTAAAFAVAIVGAEYVARLLPKGTHHYQEFIRPAELARWLREADMQLVDVSGMAYEPWRNHARLSSRTDINYLAYAVKPA
>NZ_CP052863.1|WP_005410380.1|1625680_1627024_+|TRZ/ATZ-family-hydrolase
MSDSPHLPEACDLLIEAGYVVPIEPHAVVLEDHAVAVRGSEIVAILPRAEARARFRATQVVSRPEAALMPGLVNAHTHNPMTLLRGVADDLPLMTWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCANENYFFGDVQAAVYKKHGFRALVGAVIIDFPTAWAKTDDEYFAKAGELHDQWRTDPLIGTAFAPHAPYTVNDANFERVRMLSDQLDMQVHLHTHETAQEINDSIKLHGQRPLARLDRLGLVNDRLIAVHMTQLTDAEIHLCAERGVSVVHCPESNLKLASGFCPACALQRAGVNLAIGTDGCASNNDLDMFSENRTAAILAKAVADDATALDAATTLRASTLGGARALGFGERIGSIEVGKQADLVCVDLSALETQPLHNVLSQLVYATGRQQVSDVWIAGKPKLVQRELVGMDLPGIIANARQWRERIRHIRA
>NZ_CP052863.1|WP_005410381.1|1624913_1625480_+|elongation-factor-P
MASYGMNDVKNGMKILVNNQPAVIIDTEYVKPGKGQAFTRVKYRLIKDGRTQEVTMKSTDSLDAADVVDTDMNFMYSDGEYWHFMDPESFEQVQATKAGMGGAEKWLKGEESCVVTLWNGEPIFVQPPNFVELKITETDPGVRGDTSGGGGKPATLETGAVVRVPLFVNQDEVIRVDTRSGEYSARVK
>NZ_CP052863.1|WP_169448327.1|1623778_1624795_-|EF-P-beta-lysylation-protein-EpmB
MQLSAFPRPQSPGAPARWQQLWRQALRDPQALLARLQLDPAALGVSEAAMAQFALRVPEGFVARMRKGDPADPLLRQVLPIDEEMRPAPGFSFDAVGDGAAKKATGVIQKYRGRALLVATGSCAINCRYCFRRHFDYGAENAAKGGWQEAVAAIAADPDIDEVILSGGDPLSLATHKLVELTDALRAIPHIRRLRIHTRLPIVLPERVDDELVSWLGSLPWPLAIVVHANHANEFDASVDAAMARLRGIGAQLLNQAVLLRGVNDSVQALQDLSERSFAAGVLPYYLHQLDRVEGVAHFEVDDAQAKALIAGLTARLSGYLIPKLVRELPGDSSKRPV
>NZ_CP052863.1|WP_169448326.1|1621578_1623705_+|EAL-domain-containing-protein
MKWLGSGMQARFLLAMGGAMVVVVAILAVLLGRQTAMQSEVRTLSGGVIHELFDRSVRSRGEAMARELSDALANPLYYRDLDQVGVLVRSTARQPVVRYVLVFDERGRLVHDGSVEVPGFGQPMADPLAPKAAAAQTLLVQESPKVLDNTMPIMVGNQRIGGVRVGMALDEVQQREQAANATLGERLQLVGSRHLGWLLLMLGLLVVIGVVVILYVQRTLVAPIRDLAVAARRIEAGDYQTPLAENTRDDEVGELVRGFARMRDAIARHDREVRRMAYTDALTGLTNRLAFREALDHRLMAARAANHRLGLLFADIDDFKRVNDTLGHEAGDEALLQFAQRIGRAVTEAGGDEALLARFGGDEFVILVGDGDVAANARLLAEVLVRELGRPLVVQGRELFLGTSIGVTLFPDDAADATTLLKNGDIAMYQAKMAGKNCYRYYSRAMDHAVERRVHMEQELRGAWERGELRLAYQPIFRMRDRRMVGVEVLLRWQHPTLGTIPPSVFIEVAEQSGLIEIIGPKVLHAACMEASQWPRGVAGDDLFVSVNVSPRQLRGGELPALVAQCLHESGLPASRLHLELTETAVIGDEMVAAQLLDKLHRTGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFVADMQRDPDDLALTTAIIAMAHALGITVVAEGIEQQAQFELLAQRGCDLGQGYWLSHPVTATEVVRMIESGV
>NZ_CP052863.1|WP_088435928.1|1633603_1634851_-|MFS-transporter
MSEPATAEDTALGLLSRPGFAKLLAYRIFAMLSYQVVAVTVGWHIYEVTRNPFSLGLVGLAEVLPFFCVAPFAGYLVDHLPRRRLGMVACSGLIATALVLTGVATGWLPFEGVWPIYAAIALTGMVRAFLSPIYNALFARVLARDQFARGAGLGAVVFQAGMVAGPALGGVLVGFGGKGLSYAVATAFALVAMACLATLKVEEPVHTGPAAPIFKSIAEGARFVVGNRIMVGAMALDMFSVLLGGVVAMLPAFLHEILHHGPEGLGILRAMPALGSVCVGLWLARHPLHRNAGRVLLFAVGGFGLCVIGFGLSQHFWLSALILLFYGAFDGVSVVIRSTILQLATPEEMRGRVSSINGIFISSSNELGAFYAGTMARLLGLVPAVVLGGFAVLSVAGITAWKNPTLRKLNLRDLQ
>NZ_CP052863.1|WP_005410372.1|1634847_1635300_-|SufE-family-protein
MTDSPFPLEPTAAEAQTAIAEEFGFFGDWSERYQYLIDLGRKLPAFPDEWKTEEHRLLGCQSMVWIVPEGNAQSLRFHAISDSAIVSGLIFLALRVYSGRSAQEILDTEPSYIQDIGLARHLSPTRSNGVAAMLAFIRETAQAQLQRDPS
>NZ_CP052863.1|WP_169448328.1|1635354_1636731_-|cysteine--tRNA-ligase
MTLRLHNNLTRQLEPFTPLDPACPTLYVCGPTVYNYVHIGNARGPVVFGVLADLLRRRFGGLRYARNITDVDDKINTAAREQGVPISTITDRFAAAYREDMAALGVVPPDIEPEVTAHMPQIITMIEQLIANGHAYAAEGHVLFAVASFDGYGKLSRRDPEEMLAGARVDVAPYKRDPGDFVLWKPSTDDLPGWESPWGRGRPGWHIECSAMAAAHLGETIDIHAGGVDLQFPHHENEIAQSECAHGGRIFARYWLHNGMLNFGGAKMSKSLGNIERVHDLVRQHPPEALRLALLSAHYRQPLDWSDGLIEQSVRTLDRLYGTLRELASIEASAVIPASVEATLDDDLNTPQALAEVARIAADARRATDPAEQARLKGELLGAGLALGLLQADPAQWFGTAAGDDGDDARIQGLIDERAAAKKAHDFARSDAIRDQLAAEGIVLEDTPQGVRWSRKRG
>NZ_CP052863.1|WP_049451716.1|1636918_1637482_+|hypothetical-protein
MKSIALLTLACLSATAAVAQAQEAEPRNRVVIVENVKFDYAQVLNVEPVFQTLRATRTEEHCEPISTRTLAPVNVTGEEPVEDKGRISRFWDSVRSMFKRSDEEVSEETAAETPAPAPANNGPMLTRDCRIVPVGREFRRPIAYDVDYVYKGTKYRSRLPEDPGNRLKIRVSITPWVGPEQGAAGNP
>NZ_CP052863.1|WP_005410369.1|1637816_1638827_+|N-acetylornithine-carbamoyltransferase
MSPKHFLNTQDWSRSDLDALLTQAALFKRNKLGDQLKGKSIALVFFNPSMRTRTSFELGAFQLGAHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVAKVLGRYCDIIAVRAFPKFIDWAYDRQDIVLNSFAKYSPVPVINMETITHPCQELAHVMALQEHFGTQDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTADYILDDRYMGWAEQNVAESGGSLKISHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQFKHFIVDERKMALTNNGVFSHCLPLRRNVKATDAVMDSPQCIAINEAENRLHVQKAIMAAVAGR
>NZ_CP052863.1|WP_005410368.1|1638946_1640143_+|argininosuccinate-synthase
MSNKDVVLAFSGGLDTSFCVPYLQERGYNVHTVFADTGGVDDEERDFIEKRAAELGVTSHVTVNGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRYLIVDAALKRAAELGTNIIAHGCTGMGNDQVRFDLAVKALGDYQIIAPIREIQKEHTQTRAYEQKYLEERGFGVRAKQQAYTINENLLGLTMSGGEIDRWEAPGEGARGWCAPRSEWPEQALTVTLKFVEGEAVELNGKALPGDQILAQLNKLFAPYGVGRGVYTGDTVIGLKGRIVFEAPGLVSLLAAHRALEDAVLTKQQNRFKPDVARKWVELVYEGFYHDPLKTDIEAFLKSSQAKVNGEVVLETRGGRVDAVAVKSPHLLNTKGATYAQSADWGVEEAEGFIKLFGMSSTVYAQVNRG
>NZ_CP052863.1|WP_005410367.1|1640294_1641383_+|acetylornithine-deacetylase
MLEQTLDHLQALVSFDTRNPPRAITTGGIFDYLRANLPGFNVEVIDHGAGAVSLYAVRGTPKYLFNVHLDTVPDSPHWSADPHVMRRLDDRVVGLGVCDIKGAAAALVAAANASDGDAAFLFSSDEEANDPRCIAAFLARGIPYEAVLVAEPTMSEAVLAHRGISSVLMQFAGRAGHASGKQDAAASALHQAMRWGNRALDHVESLASARFGGLTGLRFNIGRVEGGIKANMIAPAAEVRFGFRPLPSMNIDALLATFAGFAEPEAAVFTETFRGPSLPAGDIAEAENRRLLARDVADALELPIGNAVDFWTEASLFSAGGYTTLVFGPGDIAQAHTADEFVTLEQLQRYTDAVHRIIAAGA
>NZ_CP052863.1|WP_049451671.1|1641408_1642737_+|acetylglutamate-kinase
MSPALQPHRQTRQTIVRLLSSMASAKEISQYLKRFSQLDAKRFAVVKVGGAVLRDDLDALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPEALAIVRRVFQQSNLRLVEALQQNGARATSITGGVFEAEYLDLDTYGLVGEVKKVNLAPIEASLRAGSIPVITSLGETAGGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDEAGNVIDSINLSTEYDHLIAQPWIHGGMKVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRKGEKVLRATAWNELDLPRLKGLIESSFGRALVPDYFEKTKLLRAYVSENYRTAVILTDEAEGVYLDKFAVLDDAQGEGLGRAVWNVMLEETPQLFWRSRHGNPINHFYYAESDGCYKQDHWKVFWFGADGIDRIKTYVDHCAQRTPSLQG
>NZ_CP052863.1|WP_049451674.1|1642740_1643343_+|GNAT-family-N-acetyltransferase
MSNLDAWNTVPTLRGRHVTLQPLQMEHVPGLRDALEGSGLDQLWYTQVPSPEQAETYVRAALQAQSEGKVLPFVIRDAAGGIVGSTRFYDMDAGVPKLSLGYTWYAPRVQRTGANTEAKLLLLQHAFETLGCISVVLETSWFNATSRTAIARLGAKQDGVLRNHKRHADGTPRDTVIFSIIDAEWQGVKRHLQYRLDSHA
>NZ_CP052863.1|WP_169448329.1|1643339_1644293_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MNDSTFTLGIIGARGHTGAELIKLVAAHPRLELAFVSSRERAGQHLSDHHPEFQGDLQYENLDADAVPAKGVDAVILALPNGLAAPFVAALEAAKPDTVIVDLSADYRFDNSWYYGLPELTRGRYNGQKHISNPGCYATAMQLAVHPLLDLLAGPPQCFGVSGYSGAGTTPSDKNNVELLADNLMPYALTNHVHEREVSVQLGVAVEFMPHVAPHFRGITLTANLWLNRVQTREQIVERFQQAYAGEPLIDVVDEAPWVSRIAGRHGAQVGGFTLAPGGKRVVVVATLDNLLKGAATQAMQNLNLALGIDELMSIPH

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Crispr_ID: NZ_CP052863_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_7

2257213-2257322

Orphan

Consensus_repeat	Method
CGGTGCCCACCAAGGTGGGCATCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_7

>merge|NZ_CP052863|7|2257213-2257322|CRISPRCasFinder
CGGTGCCCACCAAGGTGGGCATCTACCAGAGCAACGCCGCTCAGGCCTGGTAGCCGCCAACCTTGGTTGGCGCTGGCTTCCATCGGTGCCCACCAAGGTGGGCATCTACC

>NZ_CP052863|7|7|2257213-2257322|CRISPRCasFinder
CGGTGCCCACCAAGGTGGGCATCTACC	AGAGCAACGCCGCTCAGGCCTGGTAGCCGCCAACCTTGGTTGGCGCTGGCTTCCAT
CGGTGCCCACCAAGGTGGGCATCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_169448496.1\|2245907_2249021_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182589
NZ_CP052863.1\|WP_111118276.1\|2244741_2245911_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_CP052863.1\|WP_005409805.1\|2252147_2252813_+\|conjugal-transfer-protein-TrbP	unknown	unknown	gnl\|CDD\|237542
NZ_CP052863.1\|WP_088436546.1\|2255394_2255979_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP052863.1\|WP_049450813.1\|2244179_2244479_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239300
NZ_CP052863.1\|WP_108269817.1\|2264889_2265756_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187613
NZ_CP052863.1\|WP_088436555.1\|2256056_2257145_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225755
NZ_CP052863.1\|WP_169448500.1\|2257324_2258251_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372703
NZ_CP052863.1\|WP_088436544.1\|2258406_2259483_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP052863.1\|WP_169448499.1\|2252969_2255165_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP052863.1\|WP_049450806.1\|2249703_2251065_+\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP052863.1\|WP_108269816.1\|2262229_2264173_+\|MacB-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|182528
NZ_CP052863.1\|WP_088436543.1\|2261045_2262227_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183211
NZ_CP052863.1\|WP_169448497.1\|2251074_2252034_-\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NZ_CP052863.1\|WP_169448501.1\|2265856_2266240_-\|sensory-rhodopsin-transducer	unknown	unknown	gnl\|CDD\|377776
NZ_CP052863.1\|WP_149501135.1\|2266299_2267286_+\|TIGR03885-family-FMN-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274834
NZ_CP052863.1\|WP_005413560.1\|2260251_2260716_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_005413570.1\|2249017_2249707_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP052863.1\|WP_012480370.1\|2264290_2264884_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NZ_CP052863.1\|WP_049450798.1\|2259487_2260204_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_169448496.1\|2245907_2249021_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NZ_CP052863.1\|WP_111118276.1\|2244741_2245911_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	8.27676e-91
NZ_CP052863.1\|WP_005409805.1\|2252147_2252813_+\|conjugal-transfer-protein-TrbP	gnl\|CDD\|237542	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional.	5.19285e-79
NZ_CP052863.1\|WP_088436546.1\|2255394_2255979_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	0.00374002
NZ_CP052863.1\|WP_049450813.1\|2244179_2244479_-\|hypothetical-protein	gnl\|CDD\|239300	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.	0.00969192
NZ_CP052863.1\|WP_108269817.1\|2264889_2265756_-\|glucose-1-dehydrogenase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.43786e-129
NZ_CP052863.1\|WP_088436555.1\|2256056_2257145_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|225755	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown].	1.37976e-58
NZ_CP052863.1\|WP_169448500.1\|2257324_2258251_-\|hypothetical-protein	gnl\|CDD\|372703	pfam13748, ABC_membrane_3, ABC transporter transmembrane region. This family represents a unit of six transmembrane helices.	2.28244e-90
NZ_CP052863.1\|WP_088436544.1\|2258406_2259483_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.26687e-48
NZ_CP052863.1\|WP_169448499.1\|2252969_2255165_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	5.48115e-102
NZ_CP052863.1\|WP_049450806.1\|2249703_2251065_+\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	6.718e-132
NZ_CP052863.1\|WP_108269816.1\|2262229_2264173_+\|MacB-family-efflux-pump-subunit	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP052863.1\|WP_088436543.1\|2261045_2262227_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	2.64847e-76
NZ_CP052863.1\|WP_169448497.1\|2251074_2252034_-\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	1.73802e-131
NZ_CP052863.1\|WP_149501135.1\|2266299_2267286_+\|TIGR03885-family-FMN-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274834	TIGR03885, putative_dehydrogenase_protein, probable non-F420 flavinoid oxidoreductase. This model represents a clade of proteins within the larger subfamily TIGR03557. The parent model includes the F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554) and many other proteins. Excepting the members of this family, all members of TIGR03557 occur in species capable of synthesizing coenzyme F420. All members of the seed alignment for this model are from species that lack F420 biosynthesis. It is suggested that members of this family bind FMN, or FO, or a novel flavinoid cofactor, but not F420 per se. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP052863.1\|WP_169448501.1\|2265856_2266240_-\|sensory-rhodopsin-transducer	gnl\|CDD\|377776	pfam07100, ASRT, Anabaena sensory rhodopsin transducer. The family of bacterial Anabaena sensory rhodopsin transducers are likely to bind sugars or related metabolites. The entire protein is comprised of a single globular domain with an eight-stranded beta-sandwich fold. There are a few characteristics which define this beta-sandwich fold as being distinct from other so-named folds, and these are: 1) a well conserved tryptophan, usually following a polar residue, present at the start of the first strand; this tryptophan appears to be central to a hydrophobic interaction required to hold the two beta-sheets of the sandwich together, and 2) a nearly absolutely conserved asparagine located at the end of the second beta-strand, that hydrogen bonds with the backbone carbonyls of the residues 2 and 4 positions downstream from it, thereby stabilizing the characteristic tight turn between strands 2 and 3 of the structure.	3.42974e-72
NZ_CP052863.1\|WP_005413570.1\|2249017_2249707_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.20678e-101
NZ_CP052863.1\|WP_012480370.1\|2264290_2264884_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	6.38923e-13
NZ_CP052863.1\|WP_049450798.1\|2259487_2260204_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.67062e-66

>NZ_CP052863.1|WP_088436555.1|2256056_2257145_+|winged-helix-turn-helix-domain-containing-protein
MPATPTLDDLRRYAVARTLFKPTTLLTAIRRLGFVQADPIRAPARAQDLTLRHRVKDYRAGDLERRYTRLPVEEDCLVNYGFLPREHLALMHPRVSKREWDAETHRRAADVLAFVRERGSVHPREVDQAFAHGRVINYWGGTSNASTHLLDGMHYRGLLRVQRRDSGTRIYAVADHAEPDSSEQAQIKRAAALIDLVVRKYAPLPSASLTYLVRLLGYGAPHLAEQTRKALALAKQQLASCTLEGTTWYWPEDENPRWRRHAPDEQVRLLAPFDPVVWDRRRFELLWDWVYKFEAYTPAPKRQYGYYALPVLWHDQVVGWANLSMREGELVSNVGYAGRSLARDKVFRGALDDELQRMAGFL
>NZ_CP052863.1|WP_088436546.1|2255394_2255979_+|TetR/AcrR-family-transcriptional-regulator
MNTHPDPTAPTRGRPPTITPERLADIGIRLGLPNLTMANVAAELAVTQAALYKRVANLEALKRLVAEAVFQRWQIPRASIDAPGGLEAYLMGFVESLCEVVKAHPGLPPYLLRRTVATAPMLEKIASHQAHVAEVFGLPVDKARWLLATIAFYCIAGADTIYAIADDEEGQVITEFKQGMRALVIGSLEVSRLR
>NZ_CP052863.1|WP_169448499.1|2252969_2255165_-|TonB-dependent-siderophore-receptor
MTVYNFTSAQLRAAAAFSGLMHPPGMPMRYRMSALALGLLASFAALADTAPSTLPSVQVQEQRRVTADYAGGQVAAGSRVGLLGDKDFMDTPFSTVSYTESFIRDRQAKNLTDVIAATDPTVFSNGVTGSWSENYAIRGFASNTSDTTFNGLSGMAPYYRTSPEMFERIEVLKGPSALLNGMPPGGSVGGSVNLVPKRAGEQPLLRVSANFASDAQFGTHVDMGRRLGAGKQFGIRFNGAYRDGDGAVGKQRKKVQLGSLALDWRGERARLSADLYSADDRVDGPARGVGLAPGVAIPRPPRGDTLINPDWAYVDSQDKGAMLRGELDVNDSLMAYLAYGTSKTDYRYNGSISAQILNPAGDFTTVIGQLAFDIRKQSGDAGLRGSFHTGSVGHQWAANVTHYQHTQNDYGRRSVPGWDWTTHLYNPVWGPAAPFVAPHISHTELRLDSIGVADTLAFANDRMQLTLGVRRQQVVSETFSVATGARTSRYDESATTPAAALLVKATDTLSLYTNYVEGLSQGATAPMTAANAGDVFAPFRTKQKELGLKLDLGSFAHTFSVYEIKRPSSYTDPVTSIFSFGGEQRNRGVEWGFFGAPLDGVRLLGGVAYVQPKLTRTAGGVNEGRIATAVAQRQAKLGMEWDVPTLQGLTLTGNATAMSKQYISADNSLSVPGRTLFDVGARYSTTVAGRPLALRASVNNVTNKAYWGVPLLSSLALGAPRTVLLSATMDF
>NZ_CP052863.1|WP_005409805.1|2252147_2252813_+|conjugal-transfer-protein-TrbP
MQATTTGTSTFNLTLGSGARELLKWIALLAMTGDHVAKVVFGGYVPVVSELGRIAFPLFALVMACNLAQPGADLRKSIRRLALWGLIAQPLHALAFGSWLPLNILLTFTLAVVAVHAFANNRPVLLLLAAGVLPMFVDYQWAGVGAVLLAWIAFRHRAWWLLLVGLAAVCGVNHNGWALLAVPVVVLATRVPWRLPRWRWVFYGYYVGHLAVLAVVARVLS
>NZ_CP052863.1|WP_169448497.1|2251074_2252034_-|prolyl-aminopeptidase
MRTLYPAIEPYREFTLKVSDLHTLHVEECGTPEGIPVVYLHGGPGAGISPTHRRFFDPTRYRIVLIDQRGSGRSTPFGELRDNTTQDLMADIEKVREHLGIERWLVYGGSWGSTLSLAYAQAHPERATGLIVRGVFLGREMENRWFAEADGGARWIFPERWDRYQAYIPHAERGDMIAAYWTRMDGPDEATRIEAAQAWLGWEDNAATLQHDVDAQSTDDPLDTLAKARIEAHYFRNGIFLEPDQLLRNIDRIRHLPGVIVQGRYDIICPPRSAWDLAKAWPEARLEMVTSGHSANEPATVDALVRATDAFADRFGNGT
>NZ_CP052863.1|WP_049450806.1|2249703_2251065_+|heavy-metal-sensor-histidine-kinase
MRWSIAQRLSAMFALAALLVFALLGIGVYGVLERQVVRYQHAELQTKLHAVSGSVAICDTRERWSKVRDKVGNLISGDRDTLVWAWSDDPTFRIGGERPQVQPPNGNDSGMGTLQREGQHPLRTLYERVPGKGVRPAVDLWIGIDSEPYTHALQRFAVALWVAGGLGVLLVAGLGYWIARLGLAPLRALSDEARSLSPQRLSQRLGTQALPAELGHLTHAFNGALDRLEAAYTRLDAFNADVAHELRTPLANLMGQTQVALSRPRDNAQLQDVMQSNLEELERLRAIVNDMLFLSRAGQGDIAMETRPVALADEVAAAGDFLEFLFEEAGLTLRIEGEATASIDPSLFRRALTNLLHNAVQHARPGTEVRVQLQAEGKGTRIAVLNEGDGIAAGHLPLLFERFYRVDQAREYRGERHHGLGLSIVKAIAVLHGGDVFVASRDGLTTVGFTVAC
>NZ_CP052863.1|WP_005413570.1|2249017_2249707_+|heavy-metal-response-regulator-transcription-factor
MKLLIVEDESKTAHYLRTGLGEQGWAVDLAADGVTGLHLAREFDYDVIVLDVMLPGMDGFNVLRELRRSKQTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGRQQEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFALLALLAQRRGQILSKTVIAAQVWDINFDSNTNVVEVAIKRLRSKLDGPYPSKLLHTVRGMGYVLEVRDDEGDGR
>NZ_CP052863.1|WP_169448496.1|2245907_2249021_+|multidrug-efflux-RND-transporter-permease-subunit
MSTRVSLSSWFVRHPVATTLLTLAVILLGVAALPRLPVAPLPEAEFPTIRVNASLPGASAETMASAVATPLETQLTGVPGIIEMTSTSALGSTSITLQFDLEKNIDTAAQEVQAAINAAAGRLPSDLPNLPTWRKVNPADSPILVLSVVSAQMSMTELSDLAESRLARSISQISGVSEVNIVGQQRPAIRIQAQPERLAAMGMTLSDLRGVAQNASLNQAKGALMGEQRTSTFEANDQLFDAQDYRQLVVAYRQGSPVTLGDVAQVVDGAENAYVQAWPNGQPGVGLIISRQPGANIVRTTDAVLAALPELRANLPASVDVEVLNDRTRTIRASLHEVEVTLVLTIVLVVLVMGLFLRQLSATLIVGAVLVVALVATFAAMYVAGFSLNNLTLVALVVAVGFVVDDAIVVVENIHRHREAGLGPVEAALKGAGEIGFTVVSISLSLIAAFIPLLFMGGVVGRLFAEFAMTITVAILISIVASLTLAPMMAAHLMKRMPAHRDGQDTLAGRLLAGYDRSLQWALGHQRLVLVGFGATVAVAVASYVVIPKGFFPLQDTAFVFATTEAAQDIGFEEMVAKHQQLAKIAAEDPALQAYNHAVGATGGSQTLSNGRFWFILKDRGDRDVDVHGFIDRLRAKMASVPGITVYMRAAQDINLGAGPARTQYQYALRGQDSRELSRWAEQLTERLRGLPQLRDVSNDQQVGASVTRLQIDRTAAARFGLTANDIDQVLYDAFGQRQINEFQTETNQYRVILEIAPGLLGQVDALSYFHLRSPLTGQMVPLSAVAQVQPPGNGPLSISHNGMLPAVNLSFNLAPGVSLGEAVSLVEQAQAQIGMPDSINGRFQGTAQAFQESLASQPLLILAALLAVYIILGVLYESFVHPLTILSTLPSAGIGAVLMLWLWGLDFSIMALIGIVLLIGIVKKNGILMVDFALDAQRNRGLTPLQAIHEACLTRFRPIIMTTLAALLGAIPLMIGFGTGSELRQPLGVAVVGGLLISQLLTLYSTPVIYLALDRLFLQRRRERRAAAGAALTEPG
>NZ_CP052863.1|WP_111118276.1|2244741_2245911_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MRIPFLSARMRRRHLVLGVLLLVVLSLVMLFQGVSRSDAQPANAPPPVPVVTGRVEQRDVAHWRSGVGTVQSLQSTVLRPQVDGVLTEVLFEEGQKVRKGQLLARIDDRAIRADLGGAQAAVVRDRATLDAARSDLARLQHLSTDQLVSRQMLEQQAATVQQLQATGRGNQSAVDAAQVQLSYTRILAPMDGRIGLRQVDPGNLVRATDTQGLVTVQQTDPISVVFALPQDALPQLRQALAAGDVAVQALDRDGGQRLAEGTLQVIDNQIDETSGTVRLRARFANADDRLWPGQLVSVRVRIGQTTDALVVDAAAIQRGVEGSFVYRVVGDGSVEVLPVTVGEAEDGQVAIQGELRVGDVIVRDGQSRLRPGVVVTEAGAPVARAGAAP
>NZ_CP052863.1|WP_049450813.1|2244179_2244479_-|hypothetical-protein
MTGTRCVPAVLVVTIGLLLGACSKTQEASNATAAEDVTEVKLIPPYESLDKDKDGIVTLAEVDAVAPDWAERLHTCDTDRNKTLTRGEYDVCKQTSASH
>NZ_CP052863.1|WP_169448500.1|2257324_2258251_-|hypothetical-protein
MQHTHDPAAAAGSIGQQNAAATLKAILRTYPWQLTGTFSLVALENTLLLAYPLFAGFAVDAIINGNIGHAVSYAGVVLLFWLVGAARRAVDTRTFTRIYADLAVSVVQAQRRLGQATSTSAARVVLAREFVDFFEKHVPIIATALVSMFGAAVMLLAIEPLVGGAALLALFGALLLLPSFARRNEQLHGRLNNRLEQEIRLVDRVSPSVLRRHYTTLSRLRILLSDREAGAVLAVGATAAALFALTIGRLATTDGVTPGHVYAVMTYLWTFAGSLDDAPPMVDQLARLKDIGRRVSPGMDDADHKDAA
>NZ_CP052863.1|WP_088436544.1|2258406_2259483_-|HAMP-domain-containing-histidine-kinase
MNPKGKSIGRQITLSITVASLCSTVLSISGFYLFYYLMEVFYPRWYDEPETIMPSGLEWLWIGLTATVVVALATLIASRLTRRIITPLNSVAESLRRVASGDLEARARGGDTSMTEAATLVSDFNSMAERLSRMSENRVFWNAAIAHELRTPMTILRGRLQGIAEGVFEPGPEQFNSMLTQLEGLTRIIEDLRVVSLAESGHLDLRLQRSDVRVQVAAVVDAMSEALTESGFSVTLEARPSLADCDPARIRQAVLALLENARRHAIPCPLRVRVTLAEGHCTVTVEDGGPGVPDELRDSIFEAFQRTDVSRSRQSGGSGLGLAVVRAIAVAHHGTARCRATERGGSAFEIRWPVHARR
>NZ_CP052863.1|WP_049450798.1|2259487_2260204_-|response-regulator-transcription-factor
MKTDARTHQAPLVLIAEDEGEIADILGAYLARSGLRSARAADGEAALASHRQLRPDLVLLDVQMPKLDGWQVLSELRRRGNTPVIMLTALDQDVDKLTGLRVGADDYVAKPFNPAEIVARIQAVLRRSAKPMAEEPNGLIRQGPFEIDLRSHEVTVRTDDHVHALNFTLTEFRLLVHMARAPRMVHSRLDLLQSCLPEGDAQERTVDSHVSKLRRKLEDVGVIGIPATIRGVGYRFLD
>NZ_CP052863.1|WP_005413560.1|2260251_2260716_-|hypothetical-protein
MASTSAWMLASANPAPPLLAGAGAAALVCFRSEGPAHSARTGTLASLVLIGFAAWSASSAGLSLMPAGIAAVLVAALLARRLWALVRMARRLQDRVDATGMQSRWSKLPAAVSALLAQHLRGTATLAPALQHTLVLATLAWAAHEEAQTLERPR
>NZ_CP052863.1|WP_088436543.1|2261045_2262227_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNNRRTWIIAAIVALLAGGTGWWLFAESDDAALITAPARVADLEKTVQAVGRVNPKELVAVGAQVSGQVKRLHVVLGQRVHAGDLIAEVDSQPQRIALRSAEAAANALRAQHAASLARYAQAIRVHERQSQLVASRLVSQEGFESARVAREAARSDVAALQAQIEQALTQVETARINLGYTRIVSPSDGYIVAIVTKAGQTLNSMQTTPTIVMLAQMDTMTVRTEIAEADVELIAPGQPLWFSTLGPGGRRYESHLQQLEPAPSSIADVATGNTGGSAQTPKAVYYAGLFDVPNPGLKLKPSMTVKVTIQLARAANALQVPLTAVSESDDKAGNRATVQVVDAKGRVHERAVTTGLRTATAVQILSGLKAGENVVVGQAPSGAEAEPTSLLGM
>NZ_CP052863.1|WP_108269816.1|2262229_2264173_+|MacB-family-efflux-pump-subunit
MADALLELHGVSRAYRSAAGEVVVLKDVSLRIAAGEFIAIIGPSGSGKSTLMNILGCLDRPTEGSYRVHGAATEQMSPDELAHLRREHFGFIFQRYNLMENLSATENVALPAVYAGVEADARTTRARLLLETLGLGERTANRPSQLSGGQQQRVSIARSLMNGGAIVLADEPTGALDHASGRQVMVELKRLHAQGHTVILVTHDAAIAAHASRVIEIADGRVVSDRGTGDPAVARKAVAPERSTEPGAERRARLDATREAARMAVRSMLAHRLRTLLTMLGIIIGVAAVVTVVALGKGAQAQVESQINELGASTLEIFPGADFGDPRSAEIESLVVDDADHLAALSYVDSVSPNLSSSVAALQGNRRANTQVLGVGADLPRVRGLRLKAGRFFTDAEVEAHRAVGVVDQKAAKALFNGNPIGGTLLLGGMPVDVIGVVGASAFAGGATPTVYVPYTSAASRLLGSQRLESITVRVRDDVPTRAAESSLGAELQRLHGRRDFFIYNSDQIRKAVMKSSQTMAALVSAIAAVALVVGGVGVMNIMLVSVKERVREIGVRLAVGARQGDILRQFLIEAVLICLFGGVLGVLSALGVGALSSLLSLGVPFLFTPGPVLAALACSSAIGLGFGYFPARNAAQLDPIQALAAE
>NZ_CP052863.1|WP_012480370.1|2264290_2264884_-|mechanosensitive-ion-channel
MTGLPAWIEDWLTVVVPVAEVLAILGVAWVMVRALAWLLVQARQRGRLAPELHVGLRRGGALLLYLAAALLILERLGVSRSVLWTALTGFMAVGAVAFFAAWSVLSNLFCSFLIVATRPFRINDTIEVLESVDKPGLCGQVVDINLIYTTLSDRGEGARGCLLRVPNSLFFQRITRHWGDSGYSQLPGSVAIKGKAR
>NZ_CP052863.1|WP_108269817.1|2264889_2265756_-|glucose-1-dehydrogenase
MALPDYPRPPFPAQQQSFPGKTAQMQPRPDHGENSYRGHGLLQGKKALITGGDSGIGAAVAIAFAREGADVAIAFLDGEQDDARHVQQQIEQAGRKAVLVPCDISDPAQARSLVDRVASELDGLDILVNNAAYQRYYEHFDDITLDDWKRTFDTNVHAVFNLTRLCVPHLRGGGAIINTASVNSKRPTPNILPYSATKGAVANLTLGLAGLLAEHQIRVNAVLPGPIWTPFIPAGMAAEEVEQFGSQTPFGRPGQPAELASAYVMLASDSASYTSGALLTISGGAATL
>NZ_CP052863.1|WP_169448501.1|2265856_2266240_-|sensory-rhodopsin-transducer
METNASCIGHRRWAIAEGYIPAWSNGPSPEMQSHETCCVLNAGDEPAHVTLTLYFEDRDPVGPYRVTVPARRTCHLRLNDLQDPAPVPRGTGFATLVESDQPIIVQHTRLDSRQPANSIMTTIAHPL
>NZ_CP052863.1|WP_149501135.1|2266299_2267286_+|TIGR03885-family-FMN-dependent-LLM-class-oxidoreductase
MTIGYHASHEQFPPATLLGLALRAEQAGFEAVMCSDHFHPWTTAQGQSGHSWVWAGALAVHSALTLGMVTCPMLRQHPALVAQAAATLEQLAPGRIWLALGTGEALNERITGQPWPAKRERQKALRDAAEVMRRLWGGEQVDHDGGFQVRKARLYSRPALPLPLLGAAVTEETARWMGGWADGLITISQPLAQLRRVVAAFEEGGGRGKPMYLQAKLSYARAEQAALEGAMEQWSANVLSPELAEGLDQPEQFEAQARSVSAEVVRQHVHVSPDLGQHRAWLQELQGLGFDRIYLHNVNREQERFIDDFAEHVLPALRTQAPSAASHV

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Crispr_ID: NZ_CP052863_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_8

2472390-2472496

Orphan

Consensus_repeat	Method
GGTAGATCCACGCCATGCGTGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_8

>merge|NZ_CP052863|8|2472390-2472496|CRISPRCasFinder
GGTAGATCCACGCCATGCGTGGATGATCGAGAGGCACAGGCATCCGTGCCGACCAACGGTCGGCACCCACCAAAGCGGGTTGCGGTAGATCCACGCCATGCGTGGAT

>NZ_CP052863|8|8|2472390-2472496|CRISPRCasFinder
GGTAGATCCACGCCATGCGTGGAT	GATCGAGAGGCACAGGCATCCGTGCCGACCAACGGTCGGCACCCACCAAAGCGGGTTGC
GGTAGATCCACGCCATGCGTGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_005409582.1\|2477534_2479307_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP052863.1\|WP_005409591.1\|2467342_2467813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_005409587.1\|2470245_2471436_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP052863.1\|WP_005413279.1\|2469411_2470026_+\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP052863.1\|WP_005409592.1\|2466903_2467230_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP052863.1\|WP_032966709.1\|2463069_2463453_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_010485892.1\|2484283_2484691_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634
NZ_CP052863.1\|WP_062606981.1\|2481846_2482503_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NZ_CP052863.1\|WP_005409576.1\|2483884_2484280_+\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NZ_CP052863.1\|WP_049397481.1\|2471534_2471750_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_005409583.1\|2475427_2477530_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP052863.1\|WP_169448647.1\|2465955_2466768_+\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100
NZ_CP052863.1\|WP_005409579.1\|2481465_2481771_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP052863.1\|WP_099479177.1\|2472536_2475296_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP052863.1\|WP_169448648.1\|2479821_2481039_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340419
NZ_CP052863.1\|WP_014647078.1\|2467814_2468276_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP052863.1\|WP_005409577.1\|2482802_2483747_+\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
NZ_CP052863.1\|WP_005409594.1\|2463531_2465817_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP052863.1\|WP_005409580.1\|2481130_2481469_-\|flagellar-protein-FlgN	unknown	unknown	unknown
NZ_CP052863.1\|WP_005413280.1\|2468272_2469415_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_005409582.1\|2477534_2479307_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.55568e-97
NZ_CP052863.1\|WP_005409587.1\|2470245_2471436_+\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	7.72638e-31
NZ_CP052863.1\|WP_005413279.1\|2469411_2470026_+\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	2.48163e-86
NZ_CP052863.1\|WP_005409592.1\|2466903_2467230_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.26539e-44
NZ_CP052863.1\|WP_169448648.1\|2479821_2481039_-\|sensor-histidine-kinase	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	1.59404e-52
NZ_CP052863.1\|WP_005409576.1\|2483884_2484280_+\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	8.61259e-79
NZ_CP052863.1\|WP_014647078.1\|2467814_2468276_+\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.71084e-70
NZ_CP052863.1\|WP_005409583.1\|2475427_2477530_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.41319e-43
NZ_CP052863.1\|WP_169448647.1\|2465955_2466768_+\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	1.24436e-74
NZ_CP052863.1\|WP_005409579.1\|2481465_2481771_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.67856e-14
NZ_CP052863.1\|WP_099479177.1\|2472536_2475296_-\|phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.3056e-105
NZ_CP052863.1\|WP_062606981.1\|2481846_2482503_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	4.16291e-107
NZ_CP052863.1\|WP_005409594.1\|2463531_2465817_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP052863.1\|WP_005409577.1\|2482802_2483747_+\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.16931e-37
NZ_CP052863.1\|WP_010485892.1\|2484283_2484691_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	6.04545e-81
NZ_CP052863.1\|WP_005413280.1\|2468272_2469415_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0

>NZ_CP052863.1|WP_049397481.1|2471534_2471750_+|hypothetical-protein
MTLIRALPSLTDTERPRNASVREQLQQLEDVAREEIRELQQLADARPAPPRADEALLGLAWDLGLDGEALK
>NZ_CP052863.1|WP_005409587.1|2470245_2471436_+|chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPAALRWAILTTMTLSWLGFAWWTTRAQAHRSPEHARVLREQDQLLTELRNFVGNEIEGSRGEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGNAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSECARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIATALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>NZ_CP052863.1|WP_005413279.1|2469411_2470026_+|high-frequency-lysogenization-protein-HflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRVDASSPQEVFGDRHALKSGLRLLHNYFRSQGQDPILPKLALSVLQLERRFVQDGATVNKVASGIERAQRQATELGDSGHPDVLANLGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLFSRKAMIEAVDRQLA
>NZ_CP052863.1|WP_005413280.1|2468272_2469415_+|tRNA-2-thiouridine(34)-synthase-MnmA
MSTPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPARPGQILDPADGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGSPPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGDVCLGGAVIAATDAPLEQRLRTTPSPFEVIAA
>NZ_CP052863.1|WP_014647078.1|2467814_2468276_+|NUDIX-hydrolase
MNATPDPRWAPHATVATVVIDGGRVLLVEETIDGRQVLNQPAGHLEPGESLAEAALRETREETGWTVQLTHFIGCYQWTAGDGTAFLRFCYAARPVSHDPAQPLDTGIDRALWLTPAELQAAGERQRSPLVWQVVADYLGGQRHPLSLVREVA
>NZ_CP052863.1|WP_005409591.1|2467342_2467813_+|hypothetical-protein
MKRTLLPALLIALAATGSAAAADADKAVARHLDKLGYTYEVDEDGDYRMVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>NZ_CP052863.1|WP_005409592.1|2466903_2467230_-|ATP-dependent-Clp-protease-adapter-ClpS
MPHESSPDSQHEHGVAVEAARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>NZ_CP052863.1|WP_169448647.1|2465955_2466768_+|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGPALRTPHARLWPVLTAAGEPAMLKISSETEEQNSHRLLRWWNGDGAARLLAHEGPAILIERARGDSLRQRSIEGDDDACTAILCQVLQRLHRPRSAPPAELVCLRTWFADLLQPRAVLPPLLEQCRSLAEGLLRDEQEIRPLHGDLHHDNVLDFGPRGWLAIDPKRLLGDRAFDYTTMFSNPDLCGPGIHVATRPERFAIRLEQVCALAELERTRLLRWIAASTALSAVWFRDDGDPADIDEAVARMALEALAEA
>NZ_CP052863.1|WP_005409594.1|2463531_2465817_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGDEGEQSSSSPEGESRMEGGEGEPKGDALTEFASNLNDQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIIEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEEQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE
>NZ_CP052863.1|WP_032966709.1|2463069_2463453_+|hypothetical-protein
MNALLPHVLLPAVLLVSLPLAAFAAEPSKPSNASECIALGANRDIRPSSTEREVLLRDGDNHYRVHLQKRCLGAAASASYVFFTPSTPERICGDARSTLKTDSNHCTVTRIEPIDAATFRRLAQQGR
>NZ_CP052863.1|WP_099479177.1|2472536_2475296_-|phosphodiesterase
MDQGIIASLLQHPLASALVIVDRTGRPLAANPAAREHGLPATVAAYAPMLEDLRLMAADGGIVACTLPGGPHGHYDGHLRAVHDGAGNLLAFTLSIPEPVPLGGGGRWELALDSAGHSLWDWDIPSDRVVRTPAVGDETATEMLARVHGEDIAQVRAALEEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEGLLQEQQLHLSEAQRIASMGSWSFDPNSGHFWWSPELRSMLALEQGAVPGQRRWLKQLHPRSRGALRAAWRRLWRDGRAANLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVKTRHMQWTEECYRIHGLRKEPITLDQALALYTEDSRNAFEAALARIANGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDGLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTAEAIEEARDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVGIAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIEREEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNEACRQATAWDRAGLRFDRIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQPQPVSLRTDASGEVMLMR
>NZ_CP052863.1|WP_005409583.1|2475427_2477530_+|PAS-domain-containing-sensor-histidine-kinase
MPAEPTGTALVPDPRMAQALSRDRRRVVLSYLVMALAWMIASDSAVQALVPDPQQAAMWQSVKGSFFALASAGLLYLLLRPLAEHVLHTHARQQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACTAFGWERDELLEQTIDALWPPGQDQALQTKLEAIREAPEELCILRTQLQLRDGSLRQMELRSNAISYDGHNARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGMGRYSNQVYRLLGRRPPEARRWHRFDELLVPADPATATQTEQLLADLCSGDPVQVDVLLPLLSMDGRALMVHLRAASGVDESGRSRVLGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYTNAWAASLFGYGSHTLLGEPLSALVAAGDLARVRGQLRAGQPHLGPGHSSVVAMQRADGRSFHAGLAVGEVRYGGRDCKLLIVRDLSDSERTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAHAAQDEHDPQRRAEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSQVELLAEIEPLPHRPDNSIEQACFRIAQESLTNVLRHARASQVHLQLRDIGKRSLHLQIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGEGTLIDVHLPYQAASMAAVESPEY
>NZ_CP052863.1|WP_005409582.1|2477534_2479307_+|EAL-domain-containing-protein
MWNPNQPPVSIDDAPDRLGAGNPELQAMVAEAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRHGSDEFLIAVPRNADVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASNASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRDQGFDDFTIAVNVSTLQLLRPNFFAEVMGLIQAAGVPAQMLTLEINESALTNNVNFVHETLANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRYLRPEAFAETRPDRTLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLAINDVQVILSDQRMSDMSGTEFLGRVKMLYPDTIRLVLSGYTDLNTVTDAINRGAIYRFLTKPWNDDELRKHIHQAFRTYEEQRRSNAGPAPAESGDGGEDRPLR
>NZ_CP052863.1|WP_169448648.1|2479821_2481039_-|sensor-histidine-kinase
MSAANALVTAPLPPQPVLQALLERLREGLLLFTEDGQVALANPAAQNLLAGGEDGALPPQRLRELLPPDALEQARQHGHWNGSLPLGEGVVIAHLYHHGPVGQGHFLALFRHIEGQEDYERELQQRHAELRQAYLRLNGTQEKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTVIEAYERALRAPDPKALIPEIDDIRDRLDIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSGRDESWKLVDLHAGLESTINIIWNELKYKVTLVREFGQLPLVECLPSELNQVYMNLLLNAGHAIAERGTITVRTGVDGDHVWVEFEDTGGGISPELRQRIFDPFFTTKPVGSGTGLGLSISYSIINKHHGRIDLDSTPGVGSRFRVVLPVKQPR
>NZ_CP052863.1|WP_005409580.1|2481130_2481469_-|flagellar-protein-FlgN
MTAAMSEPLQRLAQALDVERQALVEHDVHALIRATGAKLEALRALEGAPPVGQGEQLQELAERNRANGVLLSRRRREVNWALRQLGRTEDASAYDAKGQSHTVTARRPLAVA
>NZ_CP052863.1|WP_005409579.1|2481465_2481771_-|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIDGNLQVPQALRSVTTPANKPGVSTDAAARPVEAADSLRLTGEATNLQAIERELTTAPAIDAQRVAAVRESLQNGTYKINPDAIASRMLDLDQQLHG
>NZ_CP052863.1|WP_062606981.1|2481846_2482503_-|flagellar-basal-body-P-ring-formation-protein-FlgA
MRRVTSLLAIALALASPWAAAADWQPVASIRAAALTTLPAGSEGEAQVADALRLPKCGGALQVQPTANTTVEVSCPDAGGWRLFVPVKVRRNQTVLVLNRGIGTGETLTAADITTAQRDAARIAGAVLADPNAAIGRIARRPLQAGALLSNNDLVVQRLIKRGDNVALVSRRGSVEVRIAGRAMGDAGENERVSVENLSSRRIVQGTVDAAGDVIVAR
>NZ_CP052863.1|WP_005409577.1|2482802_2483747_+|chemotaxis-protein-CheV
MSHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPSQFSGVADVRGRSVPVLDLGLAIGHPEREPEADTSPGYLVVTEFNRSIQGFLVSGVERIVNIAVEDIHPPPELGAESSYLTAVTRFQGELIQVIDVESVLADIAQVRGEAVLDPAMAMPSDGPQLQVLVVDDSRVARQQIRSVLDQLGVGATLLSDGKQALDHLLQIHASGENPAERYAMVISDIEMPAMDGYTLTTEIRRHPGLAGLYVLLHTSLSGVFNNAMVERVGANAFVAKYSPHELADFVLDRLRKVALAA
>NZ_CP052863.1|WP_005409576.1|2483884_2484280_+|flagellar-basal-body-rod-protein-FlgB
MRNLITDYLGVHAQAMPLREQRMKLIASNLGNADTPGYKAQDLDFDAALRHAQGQDANGLMATTHEQHYEISSGLNPFQIAREGVQPSLDGNTVDPDAERAAYGRAALEYRASLSFVESKVRSMLTAITGQ
>NZ_CP052863.1|WP_010485892.1|2484283_2484691_+|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDIAGSALQAQSVRMSTIASNLSNADTVAGSADAVYKPLEPIFQAVTSKNDPNITSVKVKEITQSEAAPIKRYEPGHPLADGDGYIYQPDVDPVAQMVNLISTSRNYQAGVEMLTTAKELALATLTMGR

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Crispr_ID: NZ_CP052863_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_9

3426009-3426206

Orphan

Consensus_repeat	Method
GCCCATCCACGCTTGGCGTGGATCTAC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP052863_9

>merge|NZ_CP052863|9|3426009-3426206|CRISPRCasFinder
GCCCATCTACTCATGGCGTGAACCTATTTGCGATGCGCAAGCGGGAAAAGGTCACGCGCGGTGCGCCCATCCACGCTTGGCGTGGATCTACTGGCGCGCGTGGGCGGACAAGATCATGGGCGATGCCCATCCACGCATGGCGTGGATCTACGGGTGTGCCGACCGGATGCAGTAGATCCACGCCATGCGTGGATGGAC

>NZ_CP052863|9|9|3426009-3426206|CRISPRCasFinder
GCCCATCTACTCATGGCGTGAACCTAT	TTGCGATGCGCAAGCGGGAAAAGGTCACGCGCGGTGC
GCCCATCCACGCTTGGCGTGGATCTAC	TGGCGCGCGTGGGCGGACAAGATCATGGGCGAT
GCCCATCCACGCATGGCGTGGATCTAC	GGGTGTGCCGACCGGATGCA
GTAGATCCACGCCATGCGTGGATGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_032966495.1\|3431606_3433211_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP052863.1\|WP_169448837.1\|3412533_3415404_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP052863.1\|WP_169448839.1\|3417148_3419935_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP052863.1\|WP_169448840.1\|3420934_3421654_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_169448841.1\|3422398_3424282_-\|M61-family-metallopeptidase	unknown	unknown	gnl\|CDD\|226483
NZ_CP052863.1\|WP_049482710.1\|3421736_3422402_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
NZ_CP052863.1\|WP_143572877.1\|3424488_3425067_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_005408560.1\|3433328_3433598_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP052863.1\|WP_169448843.1\|3427755_3430587_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP052863.1\|WP_169448845.1\|3433941_3434994_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237047
NZ_CP052863.1\|WP_005408557.1\|3435453_3435762_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP052863.1\|WP_005408564.1\|3427231_3427756_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
NZ_CP052863.1\|WP_169448838.1\|3416165_3417134_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP052863.1\|WP_005408558.1\|3435171_3435435_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP052863.1\|WP_012479453.1\|3436079_3439073_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP052863.1\|WP_123958322.1\|3425047_3425644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_088436857.1\|3419981_3420938_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_169448844.1\|3430583_3431531_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP052863.1\|WP_076738471.1\|3415659_3416169_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP052863.1\|WP_049448422.1\|3426253_3427204_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_169448837.1\|3412533_3415404_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	9.45889e-29
NZ_CP052863.1\|WP_005408564.1\|3427231_3427756_-\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	2.96656e-64
NZ_CP052863.1\|WP_049448422.1\|3426253_3427204_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP052863.1\|WP_169448841.1\|3422398_3424282_-\|M61-family-metallopeptidase	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	1.44326e-100
NZ_CP052863.1\|WP_049482710.1\|3421736_3422402_-\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	1.73917e-34
NZ_CP052863.1\|WP_005408560.1\|3433328_3433598_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	2.28137e-24
NZ_CP052863.1\|WP_169448843.1\|3427755_3430587_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP052863.1\|WP_169448845.1\|3433941_3434994_-\|GTPase-ObgE	gnl\|CDD\|237047	PRK12298, obgE, GTPase CgtA; Reviewed.	0
NZ_CP052863.1\|WP_005408557.1\|3435453_3435762_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	1.87416e-48
NZ_CP052863.1\|WP_169448839.1\|3417148_3419935_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.03894e-41
NZ_CP052863.1\|WP_169448838.1\|3416165_3417134_+\|FecR-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	4.6231e-53
NZ_CP052863.1\|WP_005408558.1\|3435171_3435435_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	2.70073e-51
NZ_CP052863.1\|WP_012479453.1\|3436079_3439073_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP052863.1\|WP_169448844.1\|3430583_3431531_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.29439e-155
NZ_CP052863.1\|WP_032966495.1\|3431606_3433211_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.49626e-145
NZ_CP052863.1\|WP_076738471.1\|3415659_3416169_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	3.03021e-28

>NZ_CP052863.1|WP_123958322.1|3425047_3425644_-|hypothetical-protein
MVWKYLILIISLLCPAYAKSQAFPVTGLGQCVDFISAASTTLTSQIQAHVGVRAYGLPPSYDPLTAKILVPPYSCDSNDWPGLYKTVGYLSHELGHHEAGVPNIDAPITKAQYVERNCVWEAKAVVNNAVVSDQIRVASEGFVEVPLISENSAKLWSMWSGGESLVDIGKVFCDNNHVASGKTYTKQHEDYYDANYPW
>NZ_CP052863.1|WP_143572877.1|3424488_3425067_-|hypothetical-protein
MPTILGDFVRTSVKSLLTLPMIVPLAAVAATPPPQAWSSAAKASQLEALDYIERLELARSAGPDAAADALGIKNGLLADVATATGTVRNFGGIELATELDQRSGQTTIIVRASGGCIDRDVAKAKLVLGKIVWAPLADSPAPVFGYAHFQGGSASTVFFDATGSKCLTGVRIEDPMRLKGAIEAAYKQEASK
>NZ_CP052863.1|WP_169448841.1|3422398_3424282_-|M61-family-metallopeptidase
MKTRALVMSVLFALAATPALAQTSPPGDAAAPGLLRIDVDARDLARRIFKVTATVPAKPGPMTLLYPQWIPGNHSPTGPIDKLAGLRVTANGKPLAWQRDQFNVYAFKVNVPEGVSEIVAHFDFLSSQGGSQGRVVMTPEMLNLQWNANSLYPAGVDARNLQAQASVTLPKGWGYATALETARRDGDSVVFKPISYDHLVDSPLFAGEHHQRIDLDPGAKVPVHLNVFADDAKSLKPTDAQIKLHRALVQQADKLYGARHYDHYEFLLALTDRLGGIGLEHHRSSENSAAPGYFTEWDNNAWMRDLLPHEYTHSWNGKYRRGADLATANFNVPMGDSLLWVYEGQTQFWGQVLAARSGLWSNEQTRDMLANVAATYDRGRPGLAWRALQDTTNDPTIAQRRGLAYRNYQMSEDYYSGGQMLWLEVEGKLRELSGNRRSLDDFARAFFGVGNGDWNVKPYTFEDVVATLNGIAPYDWASFLRQRLDGHGSLTGGLELAGWKLVYRDTPNDAYKAQEKRAKAALLAYSLGATVLDSGTVGDVIWDSPAFNAGLAPGMKVIAVGGREYSSQRLKDAVAAAAKDKAPIVLLVKQFDRIETMSIAYHGGLQYPVLERIAGKPDRLAELWKAR
>NZ_CP052863.1|WP_049482710.1|3421736_3422402_-|lysoplasmalogenase
MKPRARDGVILLMAILAIVGTFLQGDGRWLHWLAKPTTTLLIAAIVWRVHDPAQPFYRRAVLAGMLLSCVGDIALMLPMDAFVPGLVAFLLAHLCYIVAFRDGLRAGRGLLAASVLLATFAVLNVLGLWPHLPAPMRAPVLAYVVVLASMAVLALARQWRRPQPAAVEASSARWAAAGALLFVASDSLLALDRFAGGLPLASVLVLSTYYAAQYAIARSVK
>NZ_CP052863.1|WP_169448840.1|3420934_3421654_+|hypothetical-protein
MKQPPSTRAVFLVLLLVLAGVAVAGGALQTISETLGHSVQPDRLPPYVSSQSPREQPASLVPSPAAFPAASTAAAPERNNRLFDADYLQAARQALEQLPALAGQRLTVFHSIHFYDDGRINLDLVDPQQPGHVDSYHFERGQWRKGNPVNPQQFAPTISLQRSSTPLASIDFEAVPRVAQALQEQRNALQNPASEVGHVYVIVRKGGKLVWLPDDVAGDRESVHLQFDAQGTLRGVNRR
>NZ_CP052863.1|WP_088436857.1|3419981_3420938_+|hypothetical-protein
MKAYLWFWGAFLLFFALPFPCILYFGTSWPVALADRSAPWLSLLLLVLSLAAWLSLLFAFLHFLLLGPPRALHRVRSILADGEPRDALIEHAEQTGVQVRGFAQWKLQLSFKNLSGTPIREQLLVVDSKPQLQRFGVGRHVDARLSRVPGAFPNVVLDGAQPELDVASLWRRSIGAALGIVLVAAAYVAAYRLQSEGLGWTFLSFGHPLLVCPLVLCGYMLGLRLLGRLLQADARGDALKYRGIGVEARVLKVRQTGTYLNEQPQVEFQLEYTDRDGRVQQVSVRRFIPLIDLANIPRENVTLLYDPDDRGNVRLEGV
>NZ_CP052863.1|WP_169448839.1|3417148_3419935_+|TonB-dependent-receptor
MAGPGALQWGLLRPLLCLALLVAAPPAALAGDPAATHDSRINAGPLPSALQQWARQSGIALVFDARELAGLHANGTHGQADPASALKQLVAGMPVTILRTPSGGFVVRRIRVAPAVAPPVPATVAPRPRMPPQSPPQVDLAPIHVTGSRLPRTSVQTTLPVTTIDRADILRSGYGSLFDLLRHLPGMNGLPAMSSARSGDSQYLPVGAAATTSLDGMGPRATLFLVNGRRLPRYPMVSLEQGGLTDLGGIPLSFVERIELVRGGASAIYGADAMSGVVNIILRDQADGPEATLQTGLSSRGDAGQYRVQAATGGLRGSGDRWFAGIDLHRVDHLAGDQRDWHAETSQYLIGAFRDGDYWPATRCDGPLKRRNGACWFDSSRPRSLQPASDTASAYLRYRHERGQGRYVYAEARASHNRQRFDLGPTAVALGLYGYTFNSVLREAGNVRPQVRATDADLTLGIGRDQGSHSWDAGISAQRSDVTLATPGTVRAEPFIEAAQSLRFLPGFDALPADEATSLFPSIRNRGLTEQWQGWWGIQRALMPMRGGNAQLATGIDLRHERWTSHPDTLLSQGDLALGLPQQQRRLSRQSGGAYAELGLPLTSELRMDLAARWDYDGDYTAFSPRAGLRWTPTPHWSFLLASGRGYRAPSLFEQRRPPGQFGTLTLPVSSALPPCAQSEPDGRCVVTADVEENNALKAESSRSHSLAATWSPSDAFSLSLTHNIVELRNEILALQPADAVWNRDTWQLDEDGNLSSLRLSFDNIGRTTSRNWVLRGEYRVDTGSTGQWLFSLDALKQQELRRRRDHEPAIDLRGHVTPEMAAVLNVQWQNSNWDIALRGNQVGRTRAWLPGAECPQRQIEQNHCMNPRQLRWNLHLARRLGTRVIAALDVHNVLDAQPVNYLVGNGGQMPGLDDPLGRYYLLTLQFR
>NZ_CP052863.1|WP_169448838.1|3416165_3417134_+|FecR-domain-containing-protein
MSSHRHTEDASLFARASAWVARLEAPDCTPAERESFEDWLAEDPAHVKAWAQAEDLFQQGQGLAADPWLRTAAARAARPARRRWLPAAAAAAGICLAIGVGWMVAVDGNPAPQRFANDTHQAQRLTLPDGSVAMLDAGTTLHARFGWRHRELDLERGRLQLQVAPSNKALQLRAGTNTIRDIGTTFQVERLHDGLVEVALLEGAVEVSNGAAQHTLAPGQQLQVLPSGRIQPGPALSSTAAAEGWLHGQLVFDATPLSIVVERMNRYGHAPLVIADPEITDLAVSGTFRAGDAQELLSALELGWSIAGQTRPDGALELRRTY
>NZ_CP052863.1|WP_076738471.1|3415659_3416169_+|RNA-polymerase-sigma-factor
MAFVREERAPLCAFLRTRGVGPEDAEDIAQDCMERLIRYRAHGTDELRLLLYRIARNRLADRGRSPQSRPHLSLAEHEGHDEPTSPSPDPLRQAESGQMLSLLRQALFKLPERAREVYLLNRITGMSYTQIARHCGITAKTVEKHIARALQGLRQELGPDPLHNDGDTE
>NZ_CP052863.1|WP_169448837.1|3412533_3415404_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKHSKLSLALAGLIAVGAIAAADDVMAMSYHVQGDRIFLSGGVTYADVVSLPALLAKAQAEGRPIREVVLRTSNGGALIAGEWLQGVIRTSGLNTIVSGHCISSCSIMQSGGVERYLAGDLPIVDSVQIHAASNSGKVIYTPSPRMTQIYTGNYGGGIDAGLLHKAMYEVVQPNGLLVFRDPARTTGASITFDPDGSGSKLESFPGQDIYSNRVITAKGYRDPGDTLNVTANVSGDINPGYLRTGRQLQTFVDDDFARWNTNWQSSYINLAQSIYNASSNGPQGIGANSVQDYQNDPYYKALLLSKLRLGDLDVSTLDNSMGVIRVTNGATWRTSATTGADFMLVDNGTIALEGGALRASEVRVMAAGMLVGNGDVAGTAMDLSALASGTRPSWREDGFNRLRVYGTLMPRGGDLVTHGYVNIMPGGKVLFDVTENGGAGSGRLRVGSFFDSKQTDGALVISKGAFLELNVAQGYYGQDFRRDLVQGPIYQGGFEEVVRLGDTGYSASITGGEVFRPRHNSLLSFNVKQAADGLWLTANPGFDQLGLFTNGTSGDGLGRALATASDRRDGGLKSLLGALQFADRDVIAEQAGALRGDAHATLRLADNALVGSIGDVVQQHQAAMRSGGDAHGLASQAAQSVSAQPGMRHGSLFNQLAMHLVEPAAGGGEGSGSGRNHGLWARGFASHGRIDADGGVAGLSHNIGGIVVGADTRVADDRVTLGVSVAAADMSTKGRDGSDFSGDVRALDVGGYLDATYSRGYLSAAVRYTDLHHDTRRSVSGIDGLQQPLRAKYSNDAISARVEHAFSFTTGKGLVIQPLLPVVDYARTSATRFNEGQGAGALVGRSGSLESIRVGAGLQLFRTFEGNNGERITPRARVVWQKELGDSQARYSTGFAAAPDLVFGASSQAVGEQVLAWNLGVTSRASERLSIMADYVGERRDGQIQNGVMLGLGYKF
>NZ_CP052863.1|WP_049448422.1|3426253_3427204_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MDVLLANPRGFCAGVDRAIEIVKRAIETLGAPIYVRHEVVHNRFVVDDLKQRGAIFVEELDEVPDNNTVIFSAHGVSQAVRQEAERRGLKVFDATCPLVTKVHFEVARHCRAGRDVVLIGHAGHPEVEGTMGQWNREAGTGQIYLVEDVEQVATLQINQPENFAYTTQTTLSVDDTRGIIDALRERFPAMQGPKNDDICYATQNRQDAVRDLAKRCDLVLVVGSPNSSNSNRLSELARREGVESYLIDGAHEIDPAWVAGKQHIGVTAGASAPQVLVDGVLARLAELGANGVGELDGEPESMVFALPKELRLRLVD
>NZ_CP052863.1|WP_005408564.1|3427231_3427756_-|signal-peptidase-II
MAAPRPHPNALVWLLLSAAIIGLDQWSKAWVLSSLPEFQPVVVIDGFWNWYRTYNTGAAFSFLSDAGGWQKYFFTALAIAISGLMAWWLRGTARGNWKAAVPYALIIGGAIGNVIDRQVHGHVVDFIQWYVGSYTWPSFNIADSAIVVGAIGIALFGLFDGKSAKKADNANPKP
>NZ_CP052863.1|WP_169448843.1|3427755_3430587_-|isoleucine--tRNA-ligase
MSQDYKTTLNLPATEFPMRGDLPKREPGILARWEEQGLYQQLRDNAAGRPLFVLHDGPPYANGRIHLGHAVNKILKDIIVKSRYLAGFDAPYVPGWDCHGLPIEIAVEKKWGKVGTKLDAVEFRQKCREFAEEQINIQRGDFKRLGVTGDWDNPYKTLSFDFEANEIRALSKVVANGHLVRGAKPVYWCFDCGSALAEAEIEYQEKESPAIDVAYAARDAQAIGQAFGVSVPADVEVAVPIWTTTPWTLPASLAVSLGAEITYVLAEGPAHNGKRRWLVLAAALAERALQRYGVENVVLHGETTGAALENQLLAHPFYPEREILVLNGDHVSDEDGTGAVHTAPGHGQEDFVVSQKYGLLDKYNAGQVTPIDGRGVYLESTPPAGDVVLAGQHLWKAQEAIVGVLRDNGSLLAFHPIRHSYPHCWRHKTPVVFRATPQWFISMDKANLRNDALAAIDTVGWFPTWGKARIQSMVDGRPDWTISRQRTWGVPIALFTHRQTGEIHPRSVELMQQVADRVEAEGIDVWYSLDAAELLGAEAADYEKVTDILDVWFDSGVTHEGVLAARGFGKPADLYLEGSDQHRGWFQSSLLTGVAIDKRAPYKQCLTHGFTVDEHGRKMSKSLGNGIEPQDIMNKLGADILRLWIASADYSNEMSLSQEILKRNADAYRRLRNTARFLLGNLDGFDPAQHLRPLDQMVALDRWIVHRAWELQEKIKAAYDGYNMAEIVQLLLNFCSVDLGSLYLDVTKDRLYTMPTDSHGRRSAQSAMYHIAEAFTRWVAPILTFTADELWGYLPGEHAGHVLFTTWYDGLAPLPADAQLNATDFDQLLAVREQVAKVLEPMRANGAIGAALEAEITIAANEEQAAKWQPLADELRFLFISGDVQVRPATTDEVFVSAQPTTKAKCVRCWHHRADVGSNADHPELCGRCVSNVTGAGEVRSWF
>NZ_CP052863.1|WP_169448844.1|3430583_3431531_-|bifunctional-riboflavin-kinase/FAD-synthetase
MSRLFRSVEGGELFPNGSVVCIGAFDGLHLGHRALVRHAVARARALGVAAVAVAFEPLPREFFAQGTPPPRLTLARSKVEILRELGVDAVGLLRFDAAMAAMPAEAFVRQLLVKRLSAREVWIGPEFCFGNRRRGDLALLQKMGAELGFTAGEIEAVDLHGERISSTRIRQLLQQGDFARANDLLGRPYAISGRVVRGRQLGRTLGFPTANLRFPKTPALSGIYATWVHGVFDQPWPSVSSFGTRPTVDGVEPLLEAHLFDFQGDLYGRHIDVEFVAKLRDEEKFNDLAALTDQMHRDAEQARAILSEHRLRATA
>NZ_CP052863.1|WP_032966495.1|3431606_3433211_-|murein-biosynthesis-integral-membrane-protein-MurJ
MLRGLLSFSSMTMVSRVLGLVRDFVVTTTFGTNAITDAFWVAFRVPNFLRRLFAEGSFATAFVPVFTEVKETRSHAELRELMARTAGTLGGVLMLVTALALIFAPQLASVFSSGVDTDPVKQGLLVDLFRLTFPFLLFVSLTALAGGALNSFQRFAMPALTPVILNLCMIAGALWLAPRLGGTPEKQILALGWAVLAAGILQLLFQLPSLKGINLLTLPRWGWSHPGVRKVMTLMVPTLFGSSVAQINLLLDTVIAAKLTDGSQSWLSLADRFLELPLGVFGVALGTVILPALARHHVSTDREGFSRSLDWGLRMTLLISVPAMLGLLLLAEPLIATIFQHGQFSAFDTRMTALSVYGLSFGLPAFALLKVVLPAFYARQDTKTPVRAGVAALVANMVFNFALLAVLYQVMVPDELKAQGVMAAIGKQPGLHLALGIASALSSYLNLGLLWYWLGKTDVYQRRPGWAGYLLRLLLACAAMVGVLLALLHWLPGFSAMSVWERIGSLSLLVGGGGVTYAVAMLAMGFRPRDLRGH
>NZ_CP052863.1|WP_005408560.1|3433328_3433598_+|30S-ribosomal-protein-S20
MANIKSAKKRAKQTVVRNARNVAQRSMLRTAVKKVIKALDANDAAGAEAAFAVAQPILDRFSARGLIHKNKAARHKSRLNDRIKALKAA
>NZ_CP052863.1|WP_169448845.1|3433941_3434994_-|GTPase-ObgE
MKLVDEAEIEVFAGNGGNGCIGFRREKFIPLGGPDGGDGGAGGSVYIRADENLNTLVDFRHERIFKAQRGENGMGRQAYGKGGEDLTITVPVGTVVINVATDEVIGDLTQHGDRLLVAKGGRGGLGNMHFKSSTNRSPRQALPGEPGEERTLKLELKLLADVGLLGFPNAGKSTLIRAVSAATPKVADYPFTTLYPNLGVVKVENHRSFVIADIPGLIEGAADGAGLGAQFLRHLQRTRLLLHLVDISPMEGGVEGISPVEQVRAIERELEKHDPELLNKPRWLVLNKADLMFEDEAQAAAEQIVAELGWKEPWFLVSALGREGTFPIMSRIMAFFDRQKEEEQEARDAQ
>NZ_CP052863.1|WP_005408558.1|3435171_3435435_-|50S-ribosomal-protein-L27
MAHKKGVGSSRNGRDSNPKYLGVKIFGGQAIEAGNIIVRQRGTQFHPGTGVGLGRDHTLFALVDGKVEFSVKGAKKRRTVSIVSADA
>NZ_CP052863.1|WP_005408557.1|3435453_3435762_-|50S-ribosomal-protein-L21
MYAVLVTGGKQYRVAQGEKLRIEKLEVEVGSEIKFDNILMLGDSDGVKLGDALKGAAVTAKVLSQGRADKVRIIKFRRRKHHMKRQGHRQYYTEIEITGIAG
>NZ_CP052863.1|WP_012479453.1|3436079_3439073_+|excinuclease-ABC-subunit-UvrA
MAMDFIRIRGARTHNLKNLDLDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLSVMEKPDLDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHGYPLEAQTVSQMVDQVLTLDPEQRYMLLAPVIRDRKGEHAQVFDQLRAQGFVRVRVDGELHEIDAVPPLALRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGDGMASVQSLDNTGTAPTLFSSKYSCPVCDYSLPELEPRLFSFNAPMGACPGCDGLGMAEFFDPSRVVVHPELSLAAGAVRGWDRRNAYYFQLIASLAKHYRFDVDAAWNSLPAKVQQAVLYGSGDEAITFTYFTEAGGRTQRKHRFEGIIPNLERRYKETESPAVREELSKYISEQPCPECHGARLNKAARNVFVADRPLPDLVVLPIDEALKFFSELSLPGWRGEIAAKIVKEIGERLGFLVDVGLDYLTLERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNTVIVVEHDEDAIRLADYVLDIGPGAGVHGGEIVGQGTLQDILEAPRSLTGQYLSGKRAIEIPARRHKPNPKMTLHLRGASGNNLKGVDLAIPSGLLTCVTGVSGSGKSTLINDTLFSLAANEINGSSHPIAPYKEIDGLDLFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRELFAQVPEARARGYSPGRFSFNVRGGRCEACQGDGLIKVEMHFLPDVYVPCDVCHGKRYNRETLEILYKGFNINDVLEMTVEDALKLFEPVPSIARKLETLVDVGLSYIKLGQSATTLSGGEAQRVKLSKELSRRDTGRTLYILDEPTTGLHFHDIEALLGVLHKLRDEGNTVVVIEHNLDVIKTADWIVDLGPEGGHRGGTILVTGTPEDVAACPQSYTGQFLARMLPSTSARPEQPAAVANKPDARPPRKVKPEKPAKVAKKAVAAKSTGKASKSTTKKKDA

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Crispr_ID: NZ_CP052863_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_10

3927848-3927948

Orphan

Consensus_repeat	Method
GCTCGCTGTAAGCGAGGGGCTGAGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_10

>merge|NZ_CP052863|10|3927848-3927948|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGTGAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATGGCTCGCTGTAAGCGAGGGGCTGAGGGT

>NZ_CP052863|10|10|3927848-3927948|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGT	GAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATG
GCTCGCTGTAAGCGAGGGGCTGAGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_088436809.1\|3932740_3933835_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP052863.1\|WP_169448950.1\|3925471_3926182_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP052863.1\|WP_049450451.1\|3937637_3938735_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP052863.1\|WP_005411064.1\|3922009_3924187_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_CP052863.1\|WP_005411075.1\|3937155_3937641_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP052863.1\|WP_005411078.1\|3940186_3941125_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP052863.1\|WP_088437013.1\|3919005_3919911_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP052863.1\|WP_005411067.1\|3926169_3926448_-\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP052863.1\|WP_005411059.1\|3917118_3917502_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP052863.1\|WP_088437014.1\|3919921_3921157_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_005411069.1\|3928102_3929320_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP052863.1\|WP_005414510.1\|3935076_3937152_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP052863.1\|WP_088437015.1\|3929420_3930695_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP052863.1\|WP_100438130.1\|3917672_3918716_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP052863.1\|WP_005411073.1\|3933967_3935080_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP052863.1\|WP_088437016.1\|3930691_3931837_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP052863.1\|WP_005411065.1\|3924443_3925454_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP052863.1\|WP_005411058.1\|3915066_3916884_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP052863.1\|WP_049449946.1\|3921174_3921765_-\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349
NZ_CP052863.1\|WP_005411077.1\|3938856_3939903_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_088436809.1\|3932740_3933835_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	8.35593e-142
NZ_CP052863.1\|WP_169448950.1\|3925471_3926182_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	2.82471e-139
NZ_CP052863.1\|WP_049450451.1\|3937637_3938735_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	3.61221e-87
NZ_CP052863.1\|WP_005411064.1\|3922009_3924187_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP052863.1\|WP_005411078.1\|3940186_3941125_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_CP052863.1\|WP_088437013.1\|3919005_3919911_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP052863.1\|WP_005411067.1\|3926169_3926448_-\|YbeD-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_CP052863.1\|WP_005411059.1\|3917118_3917502_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	5.08321e-17
NZ_CP052863.1\|WP_005411075.1\|3937155_3937641_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30
NZ_CP052863.1\|WP_005411069.1\|3928102_3929320_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.03159e-149
NZ_CP052863.1\|WP_005414510.1\|3935076_3937152_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP052863.1\|WP_088437015.1\|3929420_3930695_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.78997e-51
NZ_CP052863.1\|WP_100438130.1\|3917672_3918716_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	6.68043e-133
NZ_CP052863.1\|WP_005411073.1\|3933967_3935080_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.19066e-144
NZ_CP052863.1\|WP_088437016.1\|3930691_3931837_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	9.45047e-138
NZ_CP052863.1\|WP_005411065.1\|3924443_3925454_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP052863.1\|WP_005411058.1\|3915066_3916884_-\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.94666e-57
NZ_CP052863.1\|WP_049449946.1\|3921174_3921765_-\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	6.55235e-62
NZ_CP052863.1\|WP_005411077.1\|3938856_3939903_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0

>NZ_CP052863.1|WP_005411067.1|3926169_3926448_-|YbeD-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_CP052863.1|WP_169448950.1|3925471_3926182_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMEAVKPVLLDHLARQFGLLLQHPPELPDLSAAA
>NZ_CP052863.1|WP_005411065.1|3924443_3925454_-|lipoyl-synthase
MTETTARSIPLQIVQGDSPSAAPLQAGVKQLGGDKINRSPVQFADAPVLRKPSWIRVRIPSGNAVQNLKAKLRENRLVTVCEEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLGQTVADMGLKYVVVTSVDRDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMERALEILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLNLLKNFKAQHPDVPTKSGIMLGLGEDFEQIKATLRDLRAHDVDMITIGQYLQPTAHHHPVLKYWTPEDYKALEDYGYELGFSHVASGPMVRSSYHADVQAKGAGVS
>NZ_CP052863.1|WP_005411064.1|3922009_3924187_-|carboxy-terminal-processing-peptidase
MKFKAPAFLMALALVAPLALAAKADSPALPAAATADQVTTSKLVYGLLSDSRYAYRPRALDEATSKDVFKRYLETLDGGKQYFTQADVARFAPFEANIASAIRGGELEPAFQVFAVYKQRVGERVAYARKLLKQEPDFTTDERFEYDRKKVPWAASSAELDELWRKSVKNDWLRLKLAGKKPDDIRKTLDKRYATLEKSVNELKGEDVFQFFMNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDVVVIREIIAGGPAAVDGTLKPGDRIVGVGQGKSGLVEDVIGWRIDDVVAKIRGAKDTQVKLEFIPAAEGADGKHHTLVLTRQKVRLAEQAAKGETMTIPAANGEPARRIGVIKLPTFYQDFEGRRRNAADYASATRDVAKLLAGFKNDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRNQGVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPSGETQRFGQVKLTIAQFFRISGSSTQHKGVVPDLAFPASVDATEFGESTYDNALPWTRIAAVPHTQYGNFAPLLPKLETRHDARIATDKEFQWWNEDVQQFRTEAAKKYISLNEATRRAERERQDTQRKERQVQRKELGLALDPLADDSSDDGLTGNERDIVKDAAREKAAEKRPDPLLRESASILADAVNLLANDRPLSAQVLPQSTGAGRWAD
>NZ_CP052863.1|WP_049449946.1|3921174_3921765_-|DUF2242-domain-containing-protein
MRASRLSSVAVALASALILSACGGRVADSTLLRESFDSGDTFSRTVDGRPGDACEAARRTLLSQGYAIARSDAAQVEGNKNFQPREDDHEQLVLRISCAPRGSQTLVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVTDAEFYRRFFQRLQQYLPAEAGKPVPPVVTTPEPAPASTDQD
>NZ_CP052863.1|WP_088437014.1|3919921_3921157_-|hypothetical-protein
MGVALLLPALGAAATPLDCTQGLLQRLGWRFETRAIGAPQVHGGPVCTRASLPEAQAAGDLRVKWPADMPAAARKALLQQVLDDPATVCAYAFQLGAATQRAAAALQGNAGFRFSGLQLGWIGFGLHGAQAQGWQRTRSFGRGFVPITGNSQALQAFYSGNVRAECGVGRQVAQLATQRELYGDAAFDAGFSAEELSIGTFLALHDTDSILLGAHAGDYFADGKAVRTSAMGRQAFVGVPGFIEHVDDKGTLDDLSNQAENFVVVSVGEEAAQALAAHGGLAWYDQRNAELWALAQDIPRIGRRYFERLLFERDPDLRARLEPRYHATLARMDRLLDDPFYQQFVIYVHPRGIRPIGYHIARLLDRNPRTPFSIDLAVHNLHTTLYRRWREAQLRHCAATGRPGSLTLDPN
>NZ_CP052863.1|WP_088437013.1|3919005_3919911_-|decarboxylating-6-phosphogluconate-dehydrogenase
MDIAMIGLGRMGANMAQRLHRGGHRVVGYDPGEGARQRAAEAGLEVVDSLAAAVAALPVPRVVWLMVPAGETVDQTLGQLTPHLAEGDIVIDGGNSNYQDSVRRAKALAEDDLGYVDCGTSGGVWGLQEGYSLMVGGEAAVVEQIAPLLRTLAPAEDRGWGRVGPSGAGHFTKMVHNGIEYGMMQAYAEGFALMERKQEMELDLAQVAEVWRHGSVVRSWLLDLSTEALKRNPSLDGIAPYVEDSGEGRWTVAEAIALDVPAPVITLSLLERLRSRESNSFTDRLLSAMRNEFGGHAIKKS
>NZ_CP052863.1|WP_100438130.1|3917672_3918716_+|oxidoreductase
MRPDLQLALIGYGLAGRVFHAPLIQHTPGLVLHSIVSSQRDTLLRAFSDVHVRATPQEVFDDPAVDAVVIATPNEQHAPLAIAALAAGKHVLVDKPFALDVAEAEAVLAAARDAGRIATVFQNRRFDADFLTLQALLADGTLGDIAECHVHFDRYRPQVRDRWREQDGPGSGLWYDLGPHLLDQMLVLFGWPEAIDADLAVQRDGGSAIDYFHAVLHYPRHRAIVHSGSLVAAPTPHFSVHGSKASWIKHGLDVQEAQLRRGVAPGAPGWGIDPRHGELVRCDAEDNVQRSTVDNLPGDYRRLYAQFAAAMHGDGEATVDPVQALQLMRLLQAGMDSAREGRRIALG
>NZ_CP052863.1|WP_005411059.1|3917118_3917502_-|BON-domain-containing-protein
MSNTTRTLIASALTLGLALSSSAAFAKDPAAKSPPTSAHPATHADRHDSNEPVTDTWITTKVKADLLASSNVPGTEIKVETVNGVVSLSGAVASQAEKDKAVTTAKGIKGVTRVDAAALKVSAAAKR
>NZ_CP052863.1|WP_005411058.1|3915066_3916884_-|PAS-domain-containing-protein
MALVFSDDIWDRWRLPALALAAAAIIVVPWLTLRKLQQDNEQAMAWVNHTQAVGVALQQLQADVRDVESAALTLSKGVDAPGLRERMAAANDIPGRLAELGRMTRDNPDQLIRIGRIESMLEGRMALARELARSEPNSDQRELVKDLSTRYPIRGLVEELQASEQQLLTLRAEQAARQRKQTELVSWSSLVIQLGLLGLVLWLLQRQIGRRLHAERQSLRSAARAASVLQTVREPIVLLDRDLRVQLHNPAFAELYGLQDERADGLLLESVGDGAWKDAVVRQRLSDVLLRGRELWDFEHEQRTADGMARYMLLNARRMPLPDTDDEVVLLTVSDVTMQRAVQLRVEELNRQLEGKVAQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLSRHLGDAADDKSRHYLDVISSSARRMAALIDDLLVYSRLGRAAMRQQAVDMQSLVADTRAMLDSNLQAEAENSGHVHQVEWSIAPLPIVVGDENMIRQVWLNLLGNAVKYSGNREPAKIRVDYQPQPDGGHQFTVSDNGAGFDMAYAGKLFGVFQRLHKASDYPGTGIGLASVRRVLTRHGGRIWAEAEPDVGATFHFYLPPAIDADKQGPSA
>NZ_CP052863.1|WP_005411069.1|3928102_3929320_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVIAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_CP052863.1|WP_088437015.1|3929420_3930695_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPVPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRNSAPAPAVVASTAPRAVAPAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELVGRIAGLGLGSPQIVKD
>NZ_CP052863.1|WP_088437016.1|3930691_3931837_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREENLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPAALAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP052863.1|WP_088436809.1|3932740_3933835_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTATVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP052863.1|WP_005411073.1|3933967_3935080_-|rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP052863.1|WP_005414510.1|3935076_3937152_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTATPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPVQVGAPTPEPAPAPQPGTPAAAAVPATPRPTVAEPAR
>NZ_CP052863.1|WP_005411075.1|3937155_3937641_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP052863.1|WP_049450451.1|3937637_3938735_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEETTPGGPATGATVPAGAAPATTTPAPVSSPVVPAAGRQQPSSQARTVAPASSLDPAAPVVPAAGRQPTTPEAQR
>NZ_CP052863.1|WP_005411077.1|3938856_3939903_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP052863.1|WP_005411078.1|3940186_3941125_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA

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Crispr_ID: NZ_CP052863_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052863_11

3937664-3937777

Orphan

Consensus_repeat	Method
GTTGCCGGCCAGCGGCCGGCACTACCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052863_11

>merge|NZ_CP052863|11|3937664-3937777|CRISPRCasFinder
GTTGCCGGCCAGCGGCCGGCACTACCGGGGCAGCAGGATCAAGCGAGGATGCGGGGGCAACAGTCCTCGCTTGCGACGAGGGCTGTTGCCGGCCAGCGGCCGGCACTACCGGGG

>NZ_CP052863|11|11|3937664-3937777|CRISPRCasFinder
GTTGCCGGCCAGCGGCCGGCACTACCGGGG	CAGCAGGATCAAGCGAGGATGCGGGGGCAACAGTCCTCGCTTGCGACGAGGGCT
GTTGCCGGCCAGCGGCCGGCACTACCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052863.1\|WP_088436809.1\|3932740_3933835_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP052863.1\|WP_099562485.1\|3945975_3946428_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP052863.1\|WP_005411073.1\|3933967_3935080_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP052863.1\|WP_019660690.1\|3945133_3945895_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP052863.1\|WP_005411078.1\|3940186_3941125_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP052863.1\|WP_005411085.1\|3946962_3947298_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212083
NZ_CP052863.1\|WP_169448951.1\|3943098_3945027_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341062
NZ_CP052863.1\|WP_005411086.1\|3947365_3947788_+\|low-affinity-iron-permease-family-protein	unknown	unknown	gnl\|CDD\|377225
NZ_CP052863.1\|WP_169448950.1\|3925471_3926182_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP052863.1\|WP_005411067.1\|3926169_3926448_-\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP052863.1\|WP_005411080.1\|3942239_3942971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_080101830.1\|3926799_3927858_+\|lipid-A-deacylase-LpxR-family-protein	unknown	unknown	gnl\|CDD\|378338
NZ_CP052863.1\|WP_005411075.1\|3937155_3937641_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP052863.1\|WP_005414510.1\|3935076_3937152_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP052863.1\|WP_088437015.1\|3929420_3930695_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP052863.1\|WP_062605609.1\|3941616_3942252_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP052863.1\|WP_005414515.1\|3946626_3946887_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052863.1\|WP_005411069.1\|3928102_3929320_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP052863.1\|WP_088437016.1\|3930691_3931837_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP052863.1\|WP_005411077.1\|3938856_3939903_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562

Protein	Function_ID	Function_description	E-value
NZ_CP052863.1\|WP_088436809.1\|3932740_3933835_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	8.35593e-142
NZ_CP052863.1\|WP_099562485.1\|3945975_3946428_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	4.11723e-42
NZ_CP052863.1\|WP_005411073.1\|3933967_3935080_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.19066e-144
NZ_CP052863.1\|WP_005411078.1\|3940186_3941125_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_CP052863.1\|WP_005411085.1\|3946962_3947298_+\|hypothetical-protein	gnl\|CDD\|212083	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain. DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.	0.00280065
NZ_CP052863.1\|WP_169448951.1\|3943098_3945027_-\|M1-family-metallopeptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0
NZ_CP052863.1\|WP_005411086.1\|3947365_3947788_+\|low-affinity-iron-permease-family-protein	gnl\|CDD\|377225	pfam04120, Iron_permease, Low affinity iron permease.	2.01389e-63
NZ_CP052863.1\|WP_169448950.1\|3925471_3926182_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	2.82471e-139
NZ_CP052863.1\|WP_005411067.1\|3926169_3926448_-\|YbeD-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_CP052863.1\|WP_019660690.1\|3945133_3945895_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	6.97097e-138
NZ_CP052863.1\|WP_080101830.1\|3926799_3927858_+\|lipid-A-deacylase-LpxR-family-protein	gnl\|CDD\|378338	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.	1.33148e-109
NZ_CP052863.1\|WP_005411075.1\|3937155_3937641_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30
NZ_CP052863.1\|WP_005414510.1\|3935076_3937152_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP052863.1\|WP_088437015.1\|3929420_3930695_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.78997e-51
NZ_CP052863.1\|WP_062605609.1\|3941616_3942252_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	6.30887e-29
NZ_CP052863.1\|WP_005411069.1\|3928102_3929320_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.03159e-149
NZ_CP052863.1\|WP_088437016.1\|3930691_3931837_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	9.45047e-138
NZ_CP052863.1\|WP_005411077.1\|3938856_3939903_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0

>NZ_CP052863.1|WP_005411075.1|3937155_3937641_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP052863.1|WP_005414510.1|3935076_3937152_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTATPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPVQVGAPTPEPAPAPQPGTPAAAAVPATPRPTVAEPAR
>NZ_CP052863.1|WP_005411073.1|3933967_3935080_-|rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP052863.1|WP_088436809.1|3932740_3933835_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTATVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP052863.1|WP_088437016.1|3930691_3931837_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREENLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPAALAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP052863.1|WP_088437015.1|3929420_3930695_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPVPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRNSAPAPAVVASTAPRAVAPAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELVGRIAGLGLGSPQIVKD
>NZ_CP052863.1|WP_005411069.1|3928102_3929320_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVIAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_CP052863.1|WP_080101830.1|3926799_3927858_+|lipid-A-deacylase-LpxR-family-protein
MRSVAALGLAGLLASALPLAAQAAEQCGPDAMRDHPPQINFRVDNDLFGGRHQDQGYTNGALLTLVSPNLVDYTDDPCLPRMARWVNQYLEGLHPGRFEQQNMIFSIGQGIFTPTDFSRRDLIEDDRPYAGVLIANFGFNARSGDRLQTTQLTLGVVGPWAQGKQVQNAVHEVLGDEKFKGWDNQLHNEPLFMLTHERMRRWPGDASINADGWGWDAISHYGGSIGNLETKANLGGEVRFGWKLPDDFGSTPLRPAGENTAPTRGGRPNGWSWHLFATSDAAWVIRDITLDGNTFRNSHSVDKRHVVAYGGYGVAVMYGRWKFAAARYHSTREFNGQREAPVFGSFTISRSL
>NZ_CP052863.1|WP_005411067.1|3926169_3926448_-|YbeD-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_CP052863.1|WP_169448950.1|3925471_3926182_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMEAVKPVLLDHLARQFGLLLQHPPELPDLSAAA
>NZ_CP052863.1|WP_005411077.1|3938856_3939903_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP052863.1|WP_005411078.1|3940186_3941125_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA
>NZ_CP052863.1|WP_062605609.1|3941616_3942252_-|HAD-family-hydrolase
MVAVKVATGSAVHALSAIRHWVFDMDGTLTVAVHDFAAIRRALEIAAEEDILDHIAALPDAPAQAKRAWLLDHERALAEDALPAPGAVKLLRALSAAGCRLGILTRNDHALAKLTLEAIGVGALFDDADIIGRDEAVPKPSPDGLQQHLRRWGIGAAHAVMVGDHAYDLECGRAAGAHTVLVNLPENPWPGSADWHFADCRALLAAWQQKG
>NZ_CP052863.1|WP_005411080.1|3942239_3942971_-|hypothetical-protein
MKRLILLTACTLALAACSNPEEERKAQEAAAAAAQAQKEAKAEDVAKQYDMAVAAQDWERARLHGASLLDQYKDTAAAERIAAGFDEVKAKGDAARDLRRMQGLWQYNQIPVGSKGNQVSAQIYSKERVDVDGSGAKPVQLVFRDHPEWKRHAYLVLQAGDFRCPQCTVKVTVDDGKPVPMAAWRPKTDEAIALFITDQKALWKLARKGKSISIEFPVKAGGTRTAVFETGGVDASRMPQWWQ
>NZ_CP052863.1|WP_169448951.1|3943098_3945027_-|M1-family-metallopeptidase
MRNPLMLLPLAVALAAGCSQEAAAPAAAPTAAKAPAAPVNAENRSHDESSYAEPDKVVIKDIALDLKLDFDQKQIGGTATYTLEWKQKDARQLVLDTRELTVSKVEAVAADGARSPLKFELAAADKVFGSKLTIEAPEQPAKVEVSYHTAPTASGLQWLAPSMTEGKKLPFMFSQSQAIHARSWVPLQDTPSVRFTYSAHVVSRPDVMVLMSADNDPKAARDGDYTFKMPQPIPSYLLAIAAGDLVFEPISGRSGVWAEPTMVNKAAKEFEDTEKMIGAAEKLYGEYRWGRYDMLVLPPSFPFGGMENPRLTFATPTVIVGDKSLVSLVAHELAHSWSGNLVTNASWKDIWLNEGFTTYVQGRITEALYGKEMAEMEKQIDQTDLLAEVKDMSPADQALALPPLNERDPDEALSQVAYVKGAWFLEFLEQRFGRETFDPFLRGWFDDHAFQSANTDQFVDYMKKNLLPKNPSAVTEAELKAWLDEPGIPAFAAKAQSRNFSSVDTARIAFVSAGTVPSSQVIADWSTQEWVRFIDGLGATQPLDKLATLDKAFHFTGTPNGEIAMRWYPLAIRSGYEQANEGAAAFIERVGRRKLILPIYAELVKTPKGLELAKQAFEKAKPGYHPITTASVQDMLAKAEAK
>NZ_CP052863.1|WP_019660690.1|3945133_3945895_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSESPYKAGTTHFGFRDVAAKDKQKLVGQVFTSVARNYDLMNDLMSLGVHRAWKRYYVATAQVKPGDRVLDLAGGTGDIAALLKERVGAEGSVVLGDINAGMLSVGRDRLTNRGLVLGLDYVQCNAEALPFPDNSFDLVTIAFGLRNVTDKDAGLREMYRVLKVGGQARVLEFSEVTADWFKPIYDFHSFKILPKLGKLFANDSDSYQYLAESIRKHPPQDELKAMMAQAGFERCHYKNLTGGIVSIHSGYKL
>NZ_CP052863.1|WP_099562485.1|3945975_3946428_+|nucleoside-deaminase
MITTPDYQALLQTAIAEARQGLAEGGVPIGAALYHNDGRLLGCGHNRRVQEGDPSVHGETDAFRKAGRQRRYQDTIMVTTLAPCWYCSGLVRQFNIGTVVVGESRTFQGGIDWLRENGVNVVDLDSQECVDLLGGFIAQHPEIWNEDIGE
>NZ_CP052863.1|WP_005414515.1|3946626_3946887_+|hypothetical-protein
MCAHAVRPAPDSILDPIRERLQRQYALHRRGALFWTAYQRMQLELVRRHPLDHERLCNAMATLAEDLGAVEHAQLIGHANASSTSR
>NZ_CP052863.1|WP_005411085.1|3946962_3947298_+|hypothetical-protein
MHAEVPTIPPVINVDAELDHWRRQHAEGALPHNSFGSYVPWIKFACDSLITQPRASEAERDEMFQTQYALQIMPRLSEAQAREFVDRCWQHVYQSSPVRSLQAPRLQRMRA
>NZ_CP052863.1|WP_005411086.1|3947365_3947788_+|low-affinity-iron-permease-family-protein
MKVRNLFNTIAKKAAAATGSPWTFLAAVAIVVIWGISGPVFGFNDTWQLVINTGTTIITFLMVFLIQHTQNADTAAMQIKLDELIRATAEANNELLDLEELDEARLEEIRAEYEQMAREAGDALARVRACHAARRDDEAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_CP044974	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence	45753-45785	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_CP044977	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence	48301-48333	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_LR594693	Variovorax sp. WDL1 plasmid 5	16386-16418	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_LR594677	Variovorax sp. PBS-H4 plasmid 3	16318-16350	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	MT639645	Mycobacterium phage PainterBoy, complete genome	13487-13519	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	MN096376	Mycobacterium phage Lucyedi, complete genome	13487-13519	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NC_023564	Mycobacterium phage EagleEye, complete genome	13550-13582	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_LR594667	Variovorax sp. SRS16 plasmid 2	137473-137505	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	137071-137103	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NC_020060	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence	195009-195041	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_LR594672	Variovorax sp. PBL-E5 plasmid 2	137473-137505	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	700684-700716	7	0.788
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_CP015988	Sphingobium sp. EP60837 plasmid pEP1, complete sequence	174903-174935	8	0.758
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_LR134458	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 16, complete sequence	33842-33874	8	0.758
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	770537-770569	8	0.758
NZ_CP052863_6	6.4\|1632284\|33\|NZ_CP052863\|CRISPRCasFinder	1632284-1632316	33	MK059749	Mycobacterium phage CRB2, complete genome	44494-44526	9	0.727

1. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_CP044974 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
cccgccggcgaagaaggcagccgccaagcggtc	Protospacer
* ******.********* ********** . .

2. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_CP044977 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
cccgccggcgaagaaggcagccgccaagcggtc	Protospacer
* ******.********* ********** . .

3. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_LR594693 (Variovorax sp. WDL1 plasmid 5) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
cccgccggcgaagaaggcagccgccaagcggtc	Protospacer
* ******.********* ********** . .

4. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_LR594677 (Variovorax sp. PBS-H4 plasmid 3) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
cccgccggcgaagaaggcagccgccaagcggtc	Protospacer
* ******.********* ********** . .

5. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to MT639645 (Mycobacterium phage PainterBoy, complete genome) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
gtcgccggccaagaaggctgccgccaagaccgc	Protospacer
  ******. ****************** * *.

6. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to MN096376 (Mycobacterium phage Lucyedi, complete genome) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
gtcgccggccaagaaggctgccgccaagaccgc	Protospacer
  ******. ****************** * *.

7. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NC_023564 (Mycobacterium phage EagleEye, complete genome) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
gtcgccggccaagaaggctgccgccaagaccgc	Protospacer
  ******. ****************** * *.

8. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctg------ccgccaagccagt	CRISPR spacer
cgcgccggcgaagaaggctgcagcgcccgccaa------	Protospacer
********.***********      *******

9. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctg------ccgccaagccagt	CRISPR spacer
cgcgccggcgaagaaggctgcagcgcccgccaa------	Protospacer
********.***********      *******

10. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NC_020060 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
cgaagcggtgacgaaggctggcgccaagctcgt	Protospacer
** . ****** ******** ********. **

11. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctg------ccgccaagccagt	CRISPR spacer
cgcgccggcgaagaaggctgcagcgcccgccaa------	Protospacer
********.***********      *******

12. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 7, identity: 0.788

cgcgccggtgaagaaggctg------ccgccaagccagt	CRISPR spacer
cgcgccggcgaagaaggctgcagcgcccgccaa------	Protospacer
********.***********      *******

13. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_CP015988 (Sphingobium sp. EP60837 plasmid pEP1, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
cgcgccggtggggaaggctgccgccatcagggc	Protospacer
**********..**************    .*.

14. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_LR134458 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 16, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
ggcgccggcgaagaaggcggccgccggcccggc	Protospacer
 *******.********* ******.. **.*.

15. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
cactccggcgaagaaggccgccgccaaggtcat	Protospacer
*.* ****.*********.********* . .*

16. spacer 6.4|1632284|33|NZ_CP052863|CRISPRCasFinder matches to MK059749 (Mycobacterium phage CRB2, complete genome) position: , mismatch: 9, identity: 0.727

cgcgccggtgaagaaggctgccgccaagccagt	CRISPR spacer
gaccccggcgaagaaggctcccgccaagaaggc	Protospacer
 .* ****.********** ********  .*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1162524 : 1169857

Stenotrophomonas_phage(71.43%)

integrase

attL 1156621:1156635|attR 1170721:1170735

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1156621:1156635	attL	NA	NA	NA	NA
WP_005410745.1\|1162524_1163190_+	7-cyano-7-deazaguanine synthase QueC	A0A2I7S903	Vibrio_phage	7.0e-24	35.9
WP_049449188.1\|1163372_1164329_-	hypothetical protein	NA	NA	NA	NA
WP_169448211.1\|1164706_1165681_+	hypothetical protein	NA	NA	NA	NA
WP_169448212.1\|1165677_1166235_+	hypothetical protein	S5FXQ0	Shigella_phage	6.5e-07	27.4
WP_169448213.1\|1166307_1167150_+	hypothetical protein	NA	NA	NA	NA
WP_169449094.1\|1167196_1168348_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	3.6e-68	39.0
WP_169448214.1\|1168344_1168560_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.8e-10	51.6
WP_169448215.1\|1168744_1169125_-	hypothetical protein	B7SYG6	Stenotrophomonas_phage	4.8e-54	82.5
WP_169448216.1\|1169132_1169621_-	hypothetical protein	B7SYG7	Stenotrophomonas_phage	4.7e-78	90.7
WP_169448217.1\|1169617_1169857_-	hypothetical protein	B7SYG8	Stenotrophomonas_phage	1.8e-27	72.2
1170721:1170735	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1174498 : 1202836

Stenotrophomonas_phage(100.0%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169448226.1\|1174498_1176913_+	DNA primase	B7SYD0	Stenotrophomonas_phage	0.0e+00	97.1
WP_169448227.1\|1177255_1177900_+	hypothetical protein	B7SYD2	Stenotrophomonas_phage	1.1e-74	79.4
WP_169448228.1\|1177896_1179822_+\|terminase	phage terminase large subunit family protein	B7SYD3	Stenotrophomonas_phage	0.0e+00	96.6
WP_053451655.1\|1179815_1180136_+	hypothetical protein	B7SYD4	Stenotrophomonas_phage	8.7e-49	96.2
WP_169448229.1\|1180215_1180431_+	hypothetical protein	B7SYD5	Stenotrophomonas_phage	4.6e-30	97.2
WP_169448230.1\|1180432_1181923_+\|portal	phage portal protein	B7SYD6	Stenotrophomonas_phage	1.5e-284	98.8
WP_169448231.1\|1181919_1183902_+	peptidase S14	B7SYD7	Stenotrophomonas_phage	0.0e+00	98.5
WP_169448232.1\|1183924_1184290_+	DUF2190 family protein	B7SYD8	Stenotrophomonas_phage	1.5e-52	91.7
WP_169448233.1\|1184370_1184802_+	structural protein P5	B7SYD9	Stenotrophomonas_phage	4.9e-71	93.0
WP_169448234.1\|1184798_1185137_+	hypothetical protein	B7SYE0	Stenotrophomonas_phage	9.2e-49	92.0
WP_169448235.1\|1185133_1185625_+	endopeptidase	B7SYE1	Stenotrophomonas_phage	4.4e-60	82.2
WP_053451663.1\|1185621_1185966_+	hypothetical protein	B7SYE3	Stenotrophomonas_phage	1.2e-35	70.2
WP_053451664.1\|1185958_1186441_+	hypothetical protein	B7SYE4	Stenotrophomonas_phage	8.5e-56	80.6
WP_169449095.1\|1186454_1187255_+	hypothetical protein	B7SYE5	Stenotrophomonas_phage	1.5e-142	95.1
WP_169448236.1\|1187326_1187977_+	hypothetical protein	B7SYE6	Stenotrophomonas_phage	2.0e-108	90.3
WP_169448237.1\|1187969_1191719_+	Laminin subunit alpha-2	B7SYE7	Stenotrophomonas_phage	0.0e+00	70.9
WP_053451668.1\|1191718_1192135_+	hypothetical protein	B7SYE8	Stenotrophomonas_phage	1.8e-62	84.8
WP_169448238.1\|1192138_1195744_+	hypothetical protein	B7SYE9	Stenotrophomonas_phage	0.0e+00	81.6
WP_169448239.1\|1195740_1196736_+	hypothetical protein	B7SYF0	Stenotrophomonas_phage	1.1e-41	35.6
WP_169448240.1\|1197128_1198931_+	hypothetical protein	B7SYF1	Stenotrophomonas_phage	3.9e-178	78.6
WP_049460302.1\|1198920_1199154_+	hypothetical protein	B7SYF2	Stenotrophomonas_phage	7.5e-34	89.6
WP_169448241.1\|1199301_1200093_+	DNA adenine methylase	B7SYF3	Stenotrophomonas_phage	1.7e-154	98.1
WP_169448242.1\|1200096_1200762_-	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	9.4e-122	95.5
WP_087803164.1\|1201309_1201579_-	hypothetical protein	NA	NA	NA	NA
WP_169448243.1\|1201640_1202255_+	hypothetical protein	NA	NA	NA	NA
WP_169448244.1\|1202335_1202836_+	hypothetical protein	B7SYF7	Stenotrophomonas_phage	5.2e-72	85.2

DBSCAN-SWA_3

3606217 : 3698628

Escherichia_phage(21.74%)

tail,integrase,transposase,plate

attL 3684064:3684084|attR 3704658:3704678

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123958279.1\|3606217_3606709_-\|transposase	transposase	NA	NA	NA	NA
WP_049451058.1\|3607006_3607957_-	aspartate carbamoyltransferase catalytic subunit	NA	NA	NA	NA
WP_005408378.1\|3607972_3608467_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_005408377.1\|3608459_3609026_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_123958278.1\|3609117_3610905_+	DUF4153 domain-containing protein	NA	NA	NA	NA
WP_123958277.1\|3610901_3611447_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_014036228.1\|3611530_3612238_-	YitT family protein	NA	NA	NA	NA
WP_014646220.1\|3612349_3612562_-	DUF4287 domain-containing protein	NA	NA	NA	NA
WP_169448881.1\|3613033_3613933_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_123958275.1\|3613980_3614964_-	aldo/keto reductase	NA	NA	NA	NA
WP_005408369.1\|3615171_3616314_-	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_004147099.1\|3616414_3617452_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_005408368.1\|3617539_3618217_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_005408367.1\|3618235_3619057_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_012479333.1\|3619116_3619992_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005408365.1\|3620090_3620693_+	short chain dehydrogenase	NA	NA	NA	NA
WP_005412484.1\|3620765_3621200_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_049451066.1\|3621229_3622651_+	MFS transporter	NA	NA	NA	NA
WP_005408362.1\|3622739_3624761_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_164221393.1\|3624760_3625735_-	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_005408360.1\|3625906_3626311_+	GFA family protein	NA	NA	NA	NA
WP_169448882.1\|3626590_3628108_-	MFS transporter	NA	NA	NA	NA
WP_169448883.1\|3628215_3629151_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.6e-08	21.6
WP_169448884.1\|3629190_3630054_-	DMT family transporter	NA	NA	NA	NA
WP_169448885.1\|3630187_3631567_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_169448886.1\|3631505_3632450_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_169448887.1\|3632565_3633264_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_123958266.1\|3633352_3634027_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_074726401.1\|3634030_3634678_-	Qnr family pentapeptide repeat protein	NA	NA	NA	NA
WP_169448888.1\|3634835_3635612_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_049451077.1\|3635623_3636757_+	MFS transporter	NA	NA	NA	NA
WP_049451078.1\|3636766_3638272_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_169448889.1\|3638283_3640422_-	TonB-dependent receptor	NA	NA	NA	NA
WP_049451080.1\|3640551_3640947_-	hypothetical protein	NA	NA	NA	NA
WP_012479313.1\|3641157_3641412_-	hypothetical protein	NA	NA	NA	NA
WP_005408344.1\|3641423_3641648_-	hypothetical protein	NA	NA	NA	NA
WP_169448890.1\|3642136_3644473_+	toprim domain-containing protein	D5LH15	Escherichia_phage	4.0e-135	43.1
WP_149500757.1\|3644473_3644755_+	hypothetical protein	NA	NA	NA	NA
WP_024956102.1\|3644820_3645048_+	hypothetical protein	NA	NA	NA	NA
WP_049451083.1\|3645089_3645728_+	hypothetical protein	A0A2H4J8A1	uncultured_Caudovirales_phage	1.0e-19	37.6
WP_033835195.1\|3645880_3646264_+	hypothetical protein	NA	NA	NA	NA
WP_005408338.1\|3646598_3647048_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005408337.1\|3647044_3647395_+	hypothetical protein	NA	NA	NA	NA
WP_049459412.1\|3647391_3647877_+	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	5.4e-42	55.6
WP_049451086.1\|3647873_3648251_+	hypothetical protein	NA	NA	NA	NA
WP_024956107.1\|3648603_3649158_+	hypothetical protein	NA	NA	NA	NA
WP_012479303.1\|3649154_3649745_+\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	1.9e-25	38.2
WP_005408332.1\|3649797_3650136_+	GPW/gp25 family protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
WP_005412462.1\|3650138_3651035_+\|plate	baseplate J/gp47 family protein	V5YTH6	Pseudomonas_phage	1.9e-80	56.1
WP_049397154.1\|3651027_3651807_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	7.1e-44	51.1
WP_169448891.1\|3651814_3653782_+\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	6.9e-104	38.9
WP_169448892.1\|3653783_3654443_+	hypothetical protein	V9IQM3	Stenotrophomonas_phage	7.9e-20	34.6
WP_169448893.1\|3654549_3655752_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A088FVH5	Escherichia_phage	2.1e-127	54.2
WP_005412457.1\|3655754_3656258_+\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	1.4e-40	51.2
WP_005412456.1\|3656338_3656629_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.5e-18	58.5
WP_169448894.1\|3656749_3659197_+\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	1.7e-27	22.7
WP_005408323.1\|3659199_3659667_+\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	1.1e-15	35.2
WP_049451092.1\|3659650_3659866_+\|tail	tail protein	A0A193GYC8	Enterobacter_phage	2.7e-14	52.9
WP_049451093.1\|3659856_3660930_+\|tail	phage tail protein	D5LGY1	Escherichia_phage	3.2e-95	51.9
WP_005408320.1\|3660960_3661341_-	tautomerase family protein	NA	NA	NA	NA
WP_005412452.1\|3661760_3662114_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_169448895.1\|3662110_3663067_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_169448896.1\|3663063_3663729_-	dTMP kinase	W8D0J5	Erwinia_phage	1.2e-20	35.0
WP_049403323.1\|3663725_3664787_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_049451096.1\|3664984_3666349_-	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_169448897.1\|3666539_3667802_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_005408313.1\|3667945_3668185_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-10	44.6
WP_005408312.1\|3668337_3669081_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	4.7e-13	32.3
WP_169448898.1\|3669163_3670108_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_005408310.1\|3670364_3671147_-	hypothetical protein	NA	NA	NA	NA
WP_169448899.1\|3671225_3672203_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_005408308.1\|3672294_3672489_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_012479287.1\|3672596_3673106_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_169448900.1\|3673219_3673789_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_049451099.1\|3674000_3675842_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_005408304.1\|3675884_3676838_+	AAA family ATPase	NA	NA	NA	NA
WP_108270515.1\|3676840_3677785_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_099605982.1\|3677777_3679727_+	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_049451102.1\|3679723_3680251_+	membrane protein	NA	NA	NA	NA
WP_108270514.1\|3680328_3680688_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_005408299.1\|3680755_3681355_-	recombination protein RecR	NA	NA	NA	NA
WP_005408298.1\|3681466_3681787_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_049451114.1\|3681793_3683827_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.1e-47	41.4
3684064:3684084	attL	NA	NA	NA	NA
WP_169448901.1\|3684164_3685586_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_169448902.1\|3686081_3687650_-	MobA/MobL family protein	NA	NA	NA	NA
WP_169448903.1\|3687862_3689812_-	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_169448904.1\|3690324_3691464_-	hypothetical protein	NA	NA	NA	NA
WP_169448905.1\|3691590_3692127_-	hypothetical protein	NA	NA	NA	NA
WP_169448906.1\|3692162_3692462_-	hypothetical protein	NA	NA	NA	NA
WP_169448907.1\|3692475_3692955_-	hypothetical protein	NA	NA	NA	NA
WP_169448908.1\|3693051_3693384_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_169449121.1\|3695175_3695796_+	hypothetical protein	NA	NA	NA	NA
WP_134708996.1\|3696059_3696269_+	hypothetical protein	A0A0S2SY70	Pseudomonas_phage	1.0e-13	56.7
WP_169448909.1\|3696315_3696705_-	H-NS histone family protein	NA	NA	NA	NA
WP_169448910.1\|3697230_3698628_+\|integrase	site-specific integrase	A0A059XK29	uncultured_phage	3.3e-07	22.9
3704658:3704678	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP052863

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection