CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP052855	Xylella fastidiosa subsp. multiplex strain Fillmore chromosome, complete genome	1 crisprs	DEDDh,Cas9_archaeal,WYL,csa3,c2c9_V-U4,cas3,DinG	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052855_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052855_1

2308267-2308344

Orphan

Consensus_repeat	Method
TCGTGTACTTTTAGTTTTATCGTGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052855_1

>merge|NZ_CP052855|1|2308267-2308344|CRISPRCasFinder
TCGTGTACTTTTAGTTTTATCGTGTACACGAATCGTGTAGTCTGTACACAATTCGTGTACTTTTAGTTTTATCGTGTA

>NZ_CP052855|1|1|2308267-2308344|CRISPRCasFinder
TCGTGTACTTTTAGTTTTATCGTGTA	CACGAATCGTGTAGTCTGTACACAAT
TCGTGTACTTTTAGTTTTATCGTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052855.1\|WP_027700130.1\|2318008_2320105_-\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NZ_CP052855.1\|WP_004084643.1\|2298109_2298418_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP052855.1\|WP_004084660.1\|2321574_2322270_-\|phosphate-regulon-transcriptional-regulator-PhoB	unknown	unknown	gnl\|CDD\|131209
NZ_CP052855.1\|WP_004084651.1\|2305931_2306810_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP052855.1\|WP_004084646.1\|2301715_2302423_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP052855.1\|WP_004084659.1\|2320216_2321557_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|274368
NZ_CP052855.1\|WP_004084645.1\|2299756_2300812_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
NZ_CP052855.1\|WP_004084654.1\|2312227_2312884_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_CP052855.1\|WP_020851257.1\|2302403_2303669_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP052855.1\|WP_004084647.1\|2300805_2301741_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP052855.1\|WP_004084650.1\|2305092_2305671_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226933
NZ_CP052855.1\|WP_004084652.1\|2306998_2307799_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP052855.1\|WP_004084644.1\|2298704_2299760_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP052855.1\|WP_004084655.1\|2312906_2314265_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP052855.1\|WP_004084656.1\|2314900_2315653_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP052855.1\|WP_004084653.1\|2308866_2310627_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|131259
NZ_CP052855.1\|WP_038211082.1\|2322352_2323981_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP052855.1\|WP_169710416.1\|2315774_2316005_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052855.1\|WP_004084649.1\|2303878_2305096_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP052855.1\|WP_031345908.1\|2316413_2317940_-\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326

Protein	Function_ID	Function_description	E-value
NZ_CP052855.1\|WP_027700130.1\|2318008_2320105_-\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP052855.1\|WP_004084643.1\|2298109_2298418_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	8.06015e-12
NZ_CP052855.1\|WP_004084660.1\|2321574_2322270_-\|phosphate-regulon-transcriptional-regulator-PhoB	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	4.91033e-127
NZ_CP052855.1\|WP_004084651.1\|2305931_2306810_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	3.6373e-138
NZ_CP052855.1\|WP_004084646.1\|2301715_2302423_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.44774e-44
NZ_CP052855.1\|WP_004084659.1\|2320216_2321557_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	9.11438e-155
NZ_CP052855.1\|WP_004084645.1\|2299756_2300812_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	0
NZ_CP052855.1\|WP_004084654.1\|2312227_2312884_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	2.9867e-79
NZ_CP052855.1\|WP_020851257.1\|2302403_2303669_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP052855.1\|WP_004084647.1\|2300805_2301741_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.84481e-17
NZ_CP052855.1\|WP_004084650.1\|2305092_2305671_+\|response-regulator-transcription-factor	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	2.77993e-88
NZ_CP052855.1\|WP_004084652.1\|2306998_2307799_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	1.14288e-162
NZ_CP052855.1\|WP_004084644.1\|2298704_2299760_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP052855.1\|WP_004084655.1\|2312906_2314265_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	3.75798e-106
NZ_CP052855.1\|WP_004084656.1\|2314900_2315653_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	6.62747e-130
NZ_CP052855.1\|WP_004084653.1\|2308866_2310627_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NZ_CP052855.1\|WP_038211082.1\|2322352_2323981_-\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	9.31178e-160
NZ_CP052855.1\|WP_004084649.1\|2303878_2305096_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.64646e-21
NZ_CP052855.1\|WP_031345908.1\|2316413_2317940_-\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	5.73996e-172

>NZ_CP052855.1|WP_004084652.1|2306998_2307799_-|30S-ribosomal-protein-S2
MPQVTMRQMLEAGVHFGHQTRYRHPKMSPNIFGARGKIHIINLEKTVPLFNDAMNFLSAVAQKRGSVLFVGTKRSARDAIKEEAERCGMPYMIQRWLGGTLTNFRTVKQSVARLKELELAETDGTFSKLVKHEVLRLRRESGKLQASLGGIKDMNRIPDAIFVIDIGHEDIAIKEAKKLGIPVVAVVDTNYDPSLVDYPIPGNDDAIRAVQLYARAAADAVLEGKAAMPNAVAVREEEFASAPDAGKKGRQAQPKKGKRASDAAAE
>NZ_CP052855.1|WP_004084651.1|2305931_2306810_-|elongation-factor-Ts
MEITASLVKELRERTGVGMMECKKALSENAGNIDAAVEWLRKSGLVKADKKAGRIAAEGRIVVVHDGGKAVLVEINSETDFVAKDSHFLAFAEAVAQAALVAGAVDVEALKSVKLPSGETVEEARAAVIAKIGENVRVRRLARIDSANNVAAYVHGGRIGVLVEVKGGDVELARGIAMHVAAMNPPYNKVADVSAEFLEKEKEIELSKMSEKDKSKPADILEKIISGKINKIVKEVTLYGQPYVLNPDQSVEQVVKAAGADVIGFQRMEVGEGIEKIVEDYASEVMKQAGLS
>NZ_CP052855.1|WP_004084650.1|2305092_2305671_+|response-regulator-transcription-factor
MNHSAAKIGLLVDDDTLYLRTLQRSLGRRGVDTVTATDAVSALTAARSALPSFALLDLKLGQDSGLALIQELRAIRSDMRILLVTGYASIATAVEAIKRGADEYLPKPANINTILRAISEETANGLTPDKDESALHTMTPLSRLQWEHIQQALHETDGNISAAARLLGMHRRSLQRKLTKRPSPGTLHDSDH
>NZ_CP052855.1|WP_004084649.1|2303878_2305096_+|HAMP-domain-containing-histidine-kinase
MHTSAASFLRTLCTLRWVATAGQVVTILMATHAMGLALPQGPLWAGVCTLALFNLYAQRRISHTHVTSPNIEFGHILVDVAVLTWMVGWSGGISNPFGSLFLVLIALAALALPLRWAMAVAATCVSGYLVSAAFGLPLPHNHFNPLTLHMWGMAANFLLSTVMVLVFTTWLAQALHAREREISLLRERFTRNEGIIALATHAASVAHELNTPLATMTLLADDVAEQCQQLELCEDLETLRELLTQCRNRVLTLAAPADKLNVDIQVHNVLDQWQLMHPTIHLKHNEDAPLQLMLEPGVGHLIMVLLNNAADAGERSDRRQVDLNLHIQDGQLYGEVRDYGSGFETPQGLLPGMLFHTQKANSMGVGLALSHATVERLQGDIWMQPAKGRGTRVSFRVPLKETSTA
>NZ_CP052855.1|WP_020851257.1|2302403_2303669_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MHDIVTPQVASDSAVPWSRRRTQAVNIGHVTVGGGHPVVVQSMTNTDTADVVASTKQVAELWRAGSEMVRLTVNNAQSAAAIPRIAERLAMMGIEVPLIGDFHYNGHQLLADEPACAEVLAKYRINPGNVGFGKKRDLQFGQLIECAIRYGKPIRIGANWGSLDQMLAAQLMDENNRRKQPWDAAQVLREVLICSAVGSAERAVELGLPRDRIVLSAKVSGVQELIAVYRDMAARCDFALHLGLTEAGIGSKGIVASSAALAVLLQEGIGDTIRISLTPEPGQSRTQEVIVAQELLQTTGHRAFTPMVTACPGCGRTTSEFFQELAKTVQQHVRDKMQVWKITHPGAETMTLAVMGCVVNGPGESRHANIGISLPGTGEMPVAPVFIDGEKSVTLRGGNIAQDFITLVDDYVERRYARFPD
>NZ_CP052855.1|WP_004084646.1|2301715_2302423_-|phosphatase-PAP2-family-protein
MPVSPTDAFVGFCRWRRAHVRHHQLLCLGVLLPLGLCVVLAVGVYQRQSFCFDLPLLYWIRTLASPNLDAFFVVLTQQGYWYGLVGIDVLIVLILLGQRRWYVAGFAGCSLVGAKLLNIAAKHLFQRERPMLWETIAPAHGFSFPSAHAMDAMAMLTVLLVLLRGVRWRGLLMMVPGTFVLLLSASRLYLGVHYPSDILGGWSAALVWVIGLYLLMFRDADRLLALRSRTDPECD
>NZ_CP052855.1|WP_004084647.1|2300805_2301741_+|DMT-family-transporter
MVTQGQLPLRAAMLMLFSTLSFGMMAITIRYASTQIPTTEIAFFRNAFGLLVLLPLILGPGKPLPRTQHGPRYIARSMLGLISMLCNFWAISHLPLTQAITLSYSTPLFATILASLWLHEVVRLRRLLAILAGFAGILVLLQPWSSTFSPALLVALAAALLNAVITIQMKQLSHLDPPDTVVFYTYAFWVPLSLLLALWQWHWPAGVEWVWLIATGIFGTIGQLLWIRALRLGEVSTLQPIGFMQLPLVTLLGWWLFGEHLDRYTALGASIIIGANVYITHREAVLARRTAAETIQKGVQSNGINRTQGPS
>NZ_CP052855.1|WP_004084645.1|2299756_2300812_+|UDP-N-acetylmuramate-dehydrogenase
MSRQINTPDWILHANAPLRELNTFHIQAQARWLLEIIHPTALPQALTHPHIVGLPILVLGSGSNVLFAADPEECVLRFVNREVTILEHRIDHTLVRAGAGMAWHDLVLWSLQQGLSGLENLALIPGTVGACSIQNIGAYGVQVEEFVHIVEAYDQTEGKFVRLTASECEFAYRNSRFKREPNRYLITAVEFRLPLLHELNLNYAGISEELEALQITLPEPCDVAQAVINLRRRKLPDPEVLSNAGSFFKNPHLPREQAEQLRQHHPTLPIYPGETPESNKLSAAWLIEQCGWKGIREGDAGVAPQHSLVLVNYGEATGAELLALARRIAASVQERFGVAIEPETRLIGAQW
>NZ_CP052855.1|WP_004084644.1|2298704_2299760_+|quinone-dependent-dihydroorotate-dehydrogenase
MYSLFRPLLFTCDTERAHDISLRTLDIAYHSGALPLLTRHTRPLPTTAFGLNFPNPVGLAAGLDKNGTHIDALFALGFGFIEIGTTTPRPQAGNPKPRLFRLTQQQAVINRMGFNNLGVDALVRNVAGARRRNGPLGINIGKNKDTPNEQASNDYRYCLERVYALADYVTINLSSPNTAGLRALQEEQTLRRLIGELRETQETLAAKHGRHVPMLIKMAPDLSDSDIDAAARVLNEMSVDGVIATNTTVTRPLLRQHPLASEAGGLSGAPLLGQSTLVLRRLRTHLPETIDLIGVGGICCGADAGAKMAAGASLVQCYTGLIFKGPQLVGECVEAIRRRLEASSSGRENTQ
>NZ_CP052855.1|WP_004084643.1|2298109_2298418_+|DUF4190-domain-containing-protein
MDVIQQGTNGQQRTNVLAIASLVTSILGISFLPFIGSLCGIITGHMARAEIRRQPDTLKGDELAIVGLILGWLVVIPTVVFLMMFLLFFGGLGWFIHLTPAR
>NZ_CP052855.1|WP_004084653.1|2308866_2310627_+|ABC-transporter-ATP-binding-protein/permease
MPAPHIPNRLQRLNHLRILWPFMRRHLALFSGWLIALAVSSAATLTLPSAFKQMIDHGFSSEGQINRTFALLLLVAVILAVGTAARLFSVSLLGEKIITDLRSQLYAHLIGLDASFHDRNRSNELVSRLATDSELLRSIIGSTMSVATRSTVTAIGSLIMLFITSPRLASLSLVVIPLVILPIVLGAQQLQKAARTSQDRIADTNSFAAETLRALRTVQAYAREHYERTRFDRTLETSLQAARQRIHIQTWVTAASIVLIFSAIVGVLWAGAHDVIAGRMSAGTLGEFVLYALIGGGSIGALAEVWNELQRAAGGMGRIFELLKEKNTLTVPATPALPPHPLRGEIRFERVGFHYPQRPETPALDDIDLHIRPGETIAFVGPSGAGKSTLISLLLRFYDPTHGRILIDGVDLRQTDPKVLRTHIALVQQQPTLFTASAMENIRYGRLDATTAEIEIAARSSEADGFIRALPQGYATELGEHGLSLSGGQQQRIAIARALLKEAPILLLDEATNALDAQNEQAVQQALERLMTGRTTLIIAHRLVTILKADRIVVMDQGRIVAQGTHSELIAAGGLYAKLARLQFIE
>NZ_CP052855.1|WP_004084654.1|2312227_2312884_+|protein-L-isoaspartate-O-methyltransferase
MTIDFSIAREKMVEQQIRPWDVVDLHVLDVLAHIPREAFVPEPYRTLAYADLEIPLPGGQTMMKPVIEGRLLQALMLSPEEDVLEIGTGSGFLTACLASLGHEVVSLEINSALAASARTHLDTIGLGSNVHIEQADAFTWQPERQFSVICLTGAVSTLPLQFLQWLHPNGRMFAIHGHSPAMQAVLVRGDASTPNITSLFETDLAYLKGGEPALQFHF
>NZ_CP052855.1|WP_004084655.1|2312906_2314265_+|TolC-family-outer-membrane-protein
MIRRCLALAVTTALFPVVSQATNLLQVYEMARAADPQLSAAESTRLYSVEGQVQARAALLPQMSGAATLARSRTEYDGISGSAISKNRQYSINGSQTLFNWNQFSNLRSQRAIAKAADFTLESAKQNLIVRSSAAYFSVLIGIESLIAAEANEASAKRQFDYAQKRLEVGLSPITDLHEARASYDQARADTITARNTLQDYYQALAEITGQPVTDLRGLPEDFRPEVPAKFSNIDQLVTEAISNNPSLKAQQLQVNAAESSISAARGEHYPTLSLSGSLGKSKAWGSSSGAMSALIPDRDQPISDTNNLQLTLSIPLFAGGATQSRVRQAIAQRDIQQDNYEQNKRTLNRNTRNAYQNMIAGISEVEARRLAVVSAQAALDASQVGLEVGTRTLLDVVQNQRILFSVRQAYVQARYNFLQNRLLLSQNSGTLSIEDVQEINQLLTADSERKL
>NZ_CP052855.1|WP_004084656.1|2314900_2315653_-|UDP-2,3-diacylglucosamine-diphosphatase
MTTLIISDLHLDPLRPVVTELFLRFLREQVSGADALYILGDLFEVWIGDDMPSEVADMVAAALRTYADAGTPLYFMPGNRDFLVGADYAARAGFRILPDPCVVDLYGEPTLLLHGDLLCTDDIAYQAFRAQTRDPEFIAQFLTQTLSARLAFAQQARLASHAHQSGLKQENDSTQFEKITDVVPADVAAMFACYGVNRMIHGHTHRPALHMLQVAECACTRVVLGDWYQQGSVLCVDADGLVLEQLLLPG
>NZ_CP052855.1|WP_169710416.1|2315774_2316005_+|hypothetical-protein
MTGSGNDYHIILGKHAANPRHTKKINGMGSLYIFQLAPLFKAGNTPERICIVRKIEHHNAPTTRINTPAPLAFVVT
>NZ_CP052855.1|WP_031345908.1|2316413_2317940_-|exopolyphosphatase
MPNTLPSYPPLKDGDLLAAIDLGSNSFHMVVARYLLGQLHVVDRLREAVRIADGLDAKGGLSSKACERALECLARFGQRLRNMPSPHVRALATNTVRRLRSPQAFLVLAETALGHSIEVVSGREEARLIYLGVAHAQPPRLDQHRLVIDIGGGSTEFIIGKGFEPLERESLQVGCIASTRRFFPEGKLSKKRWNDALTEIGTEFQQFAAQYNVLGWQEALGSSGTHKTIAKICTEMKLAKGEITAEALPVLREELLKAKRIEDIHLPGLSAHRRPIIAGGILVLEAVFQTLGLEKLLVSKAAMREGILYDMLGRAGDNDPRDTSVAVLMHRYAIDEQQALRVETTAQLLFQQACGPWALDADDARVLCWAARLHELGLVIAHSHYHVHGSYVLEHSDIAGFSRQEQQVLAVLVCTHRRHVSKNAFDVLPDRLRVSVRRRAALLRLAALLHRAREPDWVPTLNLHVDGDVLMLTVPKGCLASRPLLHSDLNAEVEAMVDLGIVFKLSVV
>NZ_CP052855.1|WP_027700130.1|2318008_2320105_-|polyphosphate-kinase-1
MSKSSPIEPVSASDVSQQFRDPGLYLNRELSQLDFNFRVLAQALDEQVPLLERLRFLCISCTNLDEFFEIRVATVRHAQEFGLPPAPDGMRPTVILNAVHDLTTKLVHDQYNCWNQVLCPALAALGVGVLSHNSWNVRQKRWLRGYFRNEIMPVLSPLGLDPAHPFPKIFNKTLNIVVVLNGIDAFGRAGHLAIVRAPRSLPRIIELPQHLSRDGSQNFVFLSSVLSAFVGELFPGMVVKGAYQFRVTRNSELVVDEDEVENLALALRNELVTRGYRLAVRLEIAEDCPIPIVRTLLQNFGLQENAVYRINGPVNLSRVSQVYDMVLRPELKYPPFNPRTVRNSDHIFEIIAKGDVLLYHPYDAFTAVLDLLRQAAADPDVLAIKQTLYRTGKDSTIVDALIQAARSGKDVTVVVELRARFDEEANLGLADKLQEAGVQVVYGVVGYKTHAKMLLIVRREGRKLRRYVHLGTGNYHSGTARIYTDLSLMTANAAIGKDVHQLFLQLSGLAPKMKLECLLQSPFTLHAGVLFRIERETTFARKGRPARIVAKMNALNEPQVVRALYVASQAGVQIDLIVRGACTLRPGVQGISENIRVRSIVGRFLEHSRVYWFANNGTPELFCASADWLERNLLRRVEICFPILNPDLAKRIYSDVLQSYLDDNLNAWELGSDGVYRKLLPETDHAPYSAQAALLESL
>NZ_CP052855.1|WP_004084659.1|2320216_2321557_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MSIVSTLHRIRFAWFKTLGVLALILFAALLVGLLIGQVWIVLTLTALAEIAWQYWTLHQVLHQLAMRRRWTRSMDIGVWKQLDHLICRNQTDMRARVHRLLEMLRTYRAAAAALPDAVVVVDCNSQCIQWFNEAANTLLGLRYPSDLDRPVVERLQPLPLASWLTQGCNAESMLDVPSPVNPDVRLNLHLIPYFDDYLLLIARDVSKLLLLEQVKRDFVANVSHELRTPLTVVHGYLDMLDPDDFPDAAPMLDEMRKQSQRMTQLVEDLLTLSRLESQEELEQEQVAMVPMLATLHREAEAHSQGRHTIEVVDNAGCDLFGSNKDLHSAFSNLITNAVRYTPAGGSVRVCFQREDDGVVLMVCDTGYGIPTSHLPRITERFYRVSSSRSRERGGTGLGLSIVKHVLELHQARLDIISEVGKGSEFSCHFAAARVAMRESESVPIPP
>NZ_CP052855.1|WP_004084660.1|2321574_2322270_-|phosphate-regulon-transcriptional-regulator-PhoB
MQKRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRTRDDEEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHVWGSGVYIEERTIDVHIRRLRRTLEPFGLDDMVQTVRSAGYRFSGAIQI
>NZ_CP052855.1|WP_038211082.1|2322352_2323981_-|M48-family-metallopeptidase
MRRLSLAIATALVLPLGGIGLNAQESRLPDIGSSAGQLLTPARQAEYGKLMMAELRNYGYVLEDPLLQGWLQSIGEHLAANSDQPHQLFTFVLLKERQINAFATLGGYVAVNSGLLLTAEREDEVAAVLSHEIMHINQKHVLRSVERAQRDQIPILLGMLAAVIAAQHVGGNSSGDATMAGITSAMGLMQQRQINYTRSNEAEADRLGIHTLARSGYDLEAMAGFFERMSLVTRGNSGGDQAPDYLQTHPVTVTRISEAKARAEQLKKQKGLTGGEVDLMSRERLNLHHVFPGVPANPLLPKVLQPAYSELSRGPSGQFGWAKERLRVLSAKSPESALREYEALRRNTKGGLNDFQRYGMALAKFRNGSNLDEVMHEFRTLLEVHPDNVWLASALAQTQARAGQRHEAGERFDALLRRLSGQRAVVLMYAEMLNEGGNLQDGKRAQALLLPLLRQLSEDALFQQTFARSCELAGATARASEAYAEAAFLNGRPEQALIQLQALKKENLDYVTRARVDARIAAITPAVLEMRRQGIRDPDLDR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

205495 : 288718

Xylella_phage(30.23%)

plate,integrase,tRNA,holin,portal,terminase,tail

attL 199240:199255|attR 283699:283714

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
199240:199255	attL	NA	NA	NA	NA
WP_004085031.1\|205495_206515_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.1e-189	97.3
WP_038231117.1\|206514_206760_-	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	8.2e-31	83.1
WP_169710250.1\|208260_208773_+	hypothetical protein	NA	NA	NA	NA
WP_004086077.1\|208774_209053_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	5.6e-44	95.6
WP_169710252.1\|209049_211230_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	94.2
WP_169710406.1\|211231_212398_-	hypothetical protein	C8CLG1	Xylella_phage	6.9e-160	77.3
WP_169710134.1\|212484_213051_-	DUF2815 family protein	C8CLG2	Xylella_phage	3.9e-100	95.2
WP_169710254.1\|213047_214328_-	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	2.9e-228	92.7
WP_004086070.1\|214324_214813_-	hypothetical protein	C8CLG4	Xylella_phage	2.6e-60	95.1
WP_004086187.1\|214812_215007_-	hypothetical protein	C8CLG5	Xylella_phage	1.6e-26	98.4
WP_004086185.1\|215038_215230_-	hypothetical protein	C8CLG6	Xylella_phage	6.8e-17	75.0
WP_004086069.1\|215253_215445_-	hypothetical protein	NA	NA	NA	NA
WP_154437007.1\|215441_215849_-	hypothetical protein	C8CLG7	Xylella_phage	2.8e-52	80.0
WP_027700621.1\|215845_216316_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_038231390.1\|216312_216750_-	hypothetical protein	NA	NA	NA	NA
WP_004086362.1\|216860_217316_-	hypothetical protein	NA	NA	NA	NA
WP_169710256.1\|217601_218339_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_169710258.1\|218377_218593_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_154128206.1\|218851_219043_+	hypothetical protein	NA	NA	NA	NA
WP_010894933.1\|219070_219259_+	hypothetical protein	NA	NA	NA	NA
WP_169710260.1\|219255_219504_+	hypothetical protein	NA	NA	NA	NA
WP_169710407.1\|219782_220352_+	hypothetical protein	C8CLH5	Xylella_phage	7.9e-69	69.3
WP_169710262.1\|220487_223019_+	DNA primase	C8CLH6	Xylella_phage	0.0e+00	74.4
WP_021358648.1\|223483_223681_+	hypothetical protein	NA	NA	NA	NA
WP_169710263.1\|223714_224332_+	hypothetical protein	A0A1W6JT18	Escherichia_phage	3.4e-25	47.9
WP_169710265.1\|224298_224793_+	lysozyme	A0A2H5BQB7	Pseudomonas_phage	5.0e-27	56.7
WP_169710267.1\|224785_225115_+\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	7.4e-19	44.0
WP_169710268.1\|225104_225566_+	hypothetical protein	NA	NA	NA	NA
WP_169710270.1\|225567_225792_+	hypothetical protein	NA	NA	NA	NA
WP_004086888.1\|225922_226498_+\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	4.3e-46	58.6
WP_154128247.1\|226490_228443_+\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	1.2e-249	66.6
WP_004085156.1\|228993_230580_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	1.6e-130	50.9
WP_004085160.1\|232467_232728_+	hypothetical protein	NA	NA	NA	NA
WP_154128257.1\|232727_233051_+	hypothetical protein	NA	NA	NA	NA
WP_169710272.1\|233047_233569_+	hypothetical protein	D5LGZ7	Escherichia_phage	1.3e-12	34.5
WP_169710274.1\|233544_234087_+	hypothetical protein	A0A1W6JT55	Escherichia_phage	4.8e-39	43.2
WP_169710276.1\|234083_234671_+\|plate	phage baseplate assembly protein V	R4JMH2	Burkholderia_phage	2.0e-22	36.1
WP_004086966.1\|234707_234989_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_004086967.1\|234975_235239_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_004085176.1\|235388_235727_+	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	9.3e-33	60.4
WP_154128227.1\|235726_236620_+\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	3.9e-70	46.4
WP_004086970.1\|236612_237170_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	6.6e-52	54.4
WP_169710278.1\|237177_238770_+\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	1.0e-81	35.7
WP_169710148.1\|238834_240013_+\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	1.7e-134	55.2
WP_004085181.1\|240012_240522_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	1.8e-48	53.3
WP_169710280.1\|240524_240812_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	4.0e-13	43.4
WP_169710282.1\|243147_243630_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	2.0e-28	46.8
WP_040123123.1\|243626_243845_+\|tail	tail protein	A0A1W6JT40	Escherichia_phage	2.0e-12	48.6
WP_169710284.1\|243835_244918_+	phage late control D family protein	A0A088FRU7	Escherichia_phage	6.3e-91	45.3
WP_004086320.1\|245344_246274_+	hypothetical protein	NA	NA	NA	NA
WP_143704329.1\|246483_246705_+	hypothetical protein	NA	NA	NA	NA
WP_004086316.1\|247031_247631_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004086315.1\|247695_248148_+	CopD family protein	NA	NA	NA	NA
WP_012337572.1\|248313_249273_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_128723644.1\|249367_252949_-	DNA polymerase III subunit alpha	A0A291AVA6	Streptomyces_phage	5.3e-187	36.4
WP_012337574.1\|253237_254164_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	7.4e-48	33.7
WP_004086308.1\|254701_255031_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_004086307.1\|255075_255747_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_027700348.1\|256649_258125_+	anthranilate synthase component I	S4VNU7	Pandoravirus	3.5e-36	29.8
WP_012337576.1\|258278_258863_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.9e-66	59.7
WP_004086298.1\|258931_259966_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.7e-74	42.9
WP_004086297.1\|260050_260845_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	8.8e-66	54.6
WP_004086296.1\|260841_261564_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_004086295.1\|262548_263055_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004086294.1\|264789_265992_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_169710286.1\|266179_268006_+	DUF885 family protein	NA	NA	NA	NA
WP_004086289.1\|270285_271440_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.1e-84	45.8
WP_027700344.1\|271562_271913_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_004086285.1\|271979_273824_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_004086283.1\|273843_274809_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	9.4e-30	31.8
WP_004086282.1\|275144_276410_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	2.7e-24	36.7
WP_012337581.1\|276409_276928_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004086274.1\|276960_277779_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	2.2e-35	34.9
WP_004086273.1\|277775_278621_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_004086272.1\|278703_279084_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_004086271.1\|279087_280596_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_021358323.1\|282349_282949_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_004086267.1\|282945_284457_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
283699:283714	attR	NA	NA	NA	NA
WP_004086265.1\|284552_287231_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	7.6e-21	21.9
WP_004086263.1\|287341_287719_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_004086261.1\|287815_288718_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA

DBSCAN-SWA_2

423750 : 548565

107

Escherichia_phage(20.93%)

plate,integrase,tRNA,protease,holin,capsid,portal,terminase,tail

attL 468828:468848|attR 558949:558969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011097581.1\|423750_424248_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYZ2	Pandoravirus	3.7e-06	36.0
WP_050765460.1\|424255_424738_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_004085230.1\|424938_426315_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_004085229.1\|426845_427610_-	arginyltransferase	NA	NA	NA	NA
WP_004085228.1\|428033_428525_-	hypothetical protein	NA	NA	NA	NA
WP_049756303.1\|428528_429380_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_004085334.1\|430294_430624_-	hypothetical protein	NA	NA	NA	NA
WP_169709920.1\|431749_434626_+	S8 family serine peptidase	NA	NA	NA	NA
WP_004085225.1\|435925_437908_-	CocE/NonD family hydrolase	NA	NA	NA	NA
WP_004085224.1\|438562_441154_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_154128333.1\|443054_446081_+	TonB-dependent receptor	NA	NA	NA	NA
WP_004085222.1\|446186_447629_-	adenosylhomocysteinase	S4W1G4	Pandoravirus	2.0e-47	31.1
WP_021358468.1\|448778_450086_+	acyl-CoA synthetase	NA	NA	NA	NA
WP_004085220.1\|450950_451655_-	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	1.0e-25	38.3
WP_004085219.1\|451711_452869_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_011097591.1\|452945_453737_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_004085217.1\|453758_454241_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_004085216.1\|454237_455254_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_004085215.1\|455441_457796_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_004085214.1\|457894_459229_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_169710112.1\|459255_460446_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_004085212.1\|460442_461297_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_004085211.1\|461293_462061_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.6e-16	34.8
WP_004089320.1\|462063_462621_-	ribosome recycling factor	NA	NA	NA	NA
WP_004085207.1\|464994_465675_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_004085206.1\|465786_466107_+	DUF1820 family protein	NA	NA	NA	NA
WP_004085205.1\|467317_468049_-	UMP kinase	NA	NA	NA	NA
WP_004085344.1\|468493_468742_+	hypothetical protein	NA	NA	NA	NA
468828:468848	attL	NA	NA	NA	NA
WP_004085204.1\|469442_470102_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_004085203.1\|470198_472115_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_004085202.1\|472213_472933_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_004085201.1\|472929_473943_-	glucokinase	NA	NA	NA	NA
WP_021358465.1\|473939_475373_-	glucose-6-phosphate dehydrogenase	A0A222YYZ2	Synechococcus_phage	5.8e-68	34.2
WP_012337631.1\|475701_476796_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.1e-25	32.0
WP_004085198.1\|476940_477744_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_004085343.1\|478056_478275_+	DUF1674 domain-containing protein	NA	NA	NA	NA
WP_021358463.1\|478332_478755_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_004085197.1\|478751_479135_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_004085196.1\|479142_480933_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_004085195.1\|480953_481739_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_004085194.1\|481859_482108_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_012337633.1\|482130_482511_+	hypothetical protein	NA	NA	NA	NA
WP_004085192.1\|482536_483778_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_004085191.1\|483770_484493_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.6e-34	37.2
WP_012337634.1\|484840_487318_+	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.4e-05	34.3
WP_004085189.1\|487302_487965_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_004089267.1\|487969_488407_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_004085187.1\|488424_490173_+	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	5.7e-49	28.8
WP_004085186.1\|490169_491189_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_169710284.1\|491563_492646_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	6.3e-91	45.3
WP_040123123.1\|492636_492855_-\|tail	tail protein	A0A1W6JT40	Escherichia_phage	2.0e-12	48.6
WP_169710282.1\|492851_493334_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	2.0e-28	46.8
WP_169710408.1\|493330_495544_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	4.7e-101	46.0
WP_169710280.1\|495670_495958_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	4.0e-13	43.4
WP_004085181.1\|495960_496470_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	1.8e-48	53.3
WP_169710278.1\|497711_499304_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	1.0e-81	35.7
WP_004086970.1\|499311_499869_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	6.6e-52	54.4
WP_154128227.1\|499861_500755_-\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	3.9e-70	46.4
WP_004085176.1\|500754_501093_-	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	9.3e-33	60.4
WP_004087029.1\|501226_501541_+	type II toxin-antitoxin system RelE/ParE family toxin	O64357	Escherichia_phage	1.6e-07	30.4
WP_004087027.1\|501542_501824_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_004087025.1\|501835_502135_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.2e-15	49.4
WP_169710296.1\|502139_502727_-\|plate	phage baseplate assembly protein V	R4JMH2	Burkholderia_phage	1.2e-22	36.5
WP_154128253.1\|502723_503266_-	hypothetical protein	A0A1W6JT55	Escherichia_phage	1.2e-37	42.1
WP_169710298.1\|503241_503763_-	hypothetical protein	D5LGZ7	Escherichia_phage	7.4e-13	35.4
WP_154436962.1\|503759_504083_-	hypothetical protein	NA	NA	NA	NA
WP_169710299.1\|504082_504343_-	hypothetical protein	NA	NA	NA	NA
WP_004085158.1\|504360_506235_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	4.8e-163	48.4
WP_004085156.1\|506231_507818_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	1.6e-130	50.9
WP_038230179.1\|507814_508366_-	hypothetical protein	V5YTG8	Pseudomonas_phage	2.6e-40	51.7
WP_154128247.1\|508369_510322_-\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	1.2e-249	66.6
WP_004086888.1\|510314_510890_-\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	4.3e-46	58.6
WP_169710301.1\|511020_511245_-	hypothetical protein	NA	NA	NA	NA
WP_169709972.1\|511246_511708_-	hypothetical protein	NA	NA	NA	NA
WP_004085022.1\|511697_512027_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_169710303.1\|512019_512520_-	lysozyme	I2GUG4	Acinetobacter_phage	2.5e-26	52.1
WP_004085024.1\|512619_513351_-	site-specific DNA-methyltransferase	A0A097EWK8	Mycobacterium_phage	2.9e-63	53.2
WP_004085025.1\|513540_513876_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_004089517.1\|513872_514127_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_004085026.1\|514179_514902_-	hypothetical protein	C8CLH7	Xylella_phage	1.8e-105	82.1
WP_162010044.1\|514844_515192_-	hypothetical protein	NA	NA	NA	NA
WP_169710305.1\|516644_516923_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	3.3e-44	95.6
WP_004085029.1\|516924_517329_-	hypothetical protein	NA	NA	NA	NA
WP_169710307.1\|517413_518832_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	2.9e-269	96.6
WP_004086189.1\|518828_518993_+	hypothetical protein	C8CLF6	Xylella_phage	6.7e-21	96.3
WP_004086191.1\|518985_519234_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	2.2e-36	89.0
WP_169710308.1\|519233_520253_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.2e-171	90.3
WP_004085684.1\|521029_521671_+	ParA family protein	A0A142F1W4	Mycobacterium_phage	3.4e-12	40.7
WP_004085683.1\|521698_522175_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_004085682.1\|522179_522752_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_038231298.1\|522748_524707_+	phospholipase D family protein	NA	NA	NA	NA
WP_071869548.1\|525691_526084_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004085680.1\|527370_527856_-	asparaginase	NA	NA	NA	NA
WP_004085679.1\|528098_528698_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_004085726.1\|529099_529243_+	hypothetical protein	NA	NA	NA	NA
WP_004085678.1\|529272_530457_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.4e-51	34.3
WP_004085677.1\|530645_531221_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_027700073.1\|532574_532868_-	DUF2782 domain-containing protein	NA	NA	NA	NA
WP_004085676.1\|532952_535724_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	3.7e-63	29.3
WP_004085675.1\|536380_537094_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_031345756.1\|537291_538416_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	A0A0P0IKJ1	Acinetobacter_phage	1.8e-08	25.1
WP_004085673.1\|538614_541857_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_027700071.1\|541865_542330_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_004085671.1\|542337_543258_+	hypothetical protein	NA	NA	NA	NA
WP_161632202.1\|543260_545069_+	single-stranded-DNA-specific exonuclease RecJ	NA	NA	NA	NA
WP_100206163.1\|545736_546861_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.2e-07	44.8
WP_169710310.1\|547044_548565_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	2.9e-86	40.1
558949:558969	attR	NA	NA	NA	NA

DBSCAN-SWA_3

674040 : 717320

Xylella_phage(18.42%)

plate,integrase,holin,capsid,terminase,tail

attL 670478:670523|attR 715691:715736

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
670478:670523	attL	NA	NA	NA	NA
WP_169710316.1\|674040_674268_+	hypothetical protein	C8CLJ6	Xylella_phage	2.6e-15	64.5
WP_169710168.1\|674268_675432_-\|tail	tail fiber protein	A4PE46	Ralstonia_virus	1.9e-08	32.0
WP_004084996.1\|675435_675996_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.5e-07	26.8
WP_169710318.1\|675992_677138_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	4.8e-97	48.7
WP_004085590.1\|677240_677537_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.0e-24	54.7
WP_004085592.1\|677539_677833_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_169710320.1\|677888_678242_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	5.7e-25	51.3
WP_012382583.1\|678238_678880_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	7.4e-31	36.8
WP_004085594.1\|678876_679707_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	6.8e-77	51.5
WP_169710077.1\|679703_680021_-	hypothetical protein	NA	NA	NA	NA
WP_169710321.1\|680020_680791_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	1.7e-29	35.9
WP_004091377.1\|680901_681129_+	hypothetical protein	NA	NA	NA	NA
WP_004087087.1\|681112_681379_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5S8E8	Streptococcus_phage	2.3e-15	41.9
WP_169710323.1\|681389_683279_-	hypothetical protein	D0UII2	Aggregatibacter_phage	1.8e-24	28.0
WP_004085005.1\|683426_683849_-	hypothetical protein	NA	NA	NA	NA
WP_004085006.1\|683845_684283_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.0e-43	61.0
WP_004085008.1\|685788_686322_-	hypothetical protein	NA	NA	NA	NA
WP_012337896.1\|686245_686626_-	hypothetical protein	Q776V7	Haemophilus_phage	6.5e-19	40.4
WP_012337897.1\|686600_687080_-	hypothetical protein	M4SN98	Psychrobacter_phage	7.8e-09	29.3
WP_004085010.1\|687076_687448_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	5.2e-13	38.3
WP_169710324.1\|687450_687822_-	hypothetical protein	NA	NA	NA	NA
WP_038231112.1\|687884_688868_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	1.1e-49	39.0
WP_004085013.1\|688877_689360_-	hypothetical protein	NA	NA	NA	NA
WP_012337902.1\|689369_690578_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	3.3e-40	42.2
WP_169710326.1\|690577_691423_-\|capsid	minor capsid protein	Q7Y5U5	Haemophilus_phage	8.3e-30	34.2
WP_169710409.1\|691334_692684_-	DUF1073 domain-containing protein	L0MZ02	Edwardsiella_phage	3.1e-63	36.8
WP_004085019.1\|692764_694315_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	3.0e-110	44.4
WP_004085020.1\|694265_694664_-	hypothetical protein	NA	NA	NA	NA
WP_004085111.1\|694754_694967_-	hypothetical protein	NA	NA	NA	NA
WP_169710268.1\|694968_695430_-	hypothetical protein	NA	NA	NA	NA
WP_004085022.1\|695419_695749_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_169710328.1\|695741_696242_-	lysozyme	A0A2H5BQB7	Pseudomonas_phage	3.3e-26	53.9
WP_169710330.1\|696408_697107_-	hypothetical protein	C8CLH7	Xylella_phage	7.4e-101	83.0
WP_004085693.1\|697235_697646_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	2.4e-11	43.0
WP_169710331.1\|697651_699112_-	replicative DNA helicase	O80281	Escherichia_phage	1.3e-70	39.3
WP_004086913.1\|699108_699957_-	hypothetical protein	NA	NA	NA	NA
WP_004086925.1\|699958_700237_-	hypothetical protein	NA	NA	NA	NA
WP_004086911.1\|700215_701328_-	hypothetical protein	C8CLG1	Xylella_phage	2.1e-110	58.6
WP_169710410.1\|701357_702146_-	hypothetical protein	C8CLH5	Xylella_phage	3.6e-27	55.0
WP_169710333.1\|702403_702769_-	hypothetical protein	NA	NA	NA	NA
WP_038231490.1\|702765_703014_-	hypothetical protein	NA	NA	NA	NA
WP_020851634.1\|703010_703199_-	hypothetical protein	NA	NA	NA	NA
WP_154128206.1\|703226_703418_-	hypothetical protein	NA	NA	NA	NA
WP_038211690.1\|703676_703922_-	hypothetical protein	NA	NA	NA	NA
WP_004087040.1\|704750_705362_-	Fic family protein	NA	NA	NA	NA
WP_004087046.1\|705358_705547_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_004086362.1\|705927_706383_+	hypothetical protein	NA	NA	NA	NA
WP_038231390.1\|706493_706931_+	hypothetical protein	NA	NA	NA	NA
WP_027700621.1\|706927_707398_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_154437007.1\|707394_707802_+	hypothetical protein	C8CLG7	Xylella_phage	2.8e-52	80.0
WP_004086069.1\|707798_707990_+	hypothetical protein	NA	NA	NA	NA
WP_169710335.1\|708033_708561_+	hypothetical protein	NA	NA	NA	NA
WP_154128433.1\|708679_708871_+	hypothetical protein	C8CLG6	Xylella_phage	1.7e-15	73.4
WP_004086369.1\|708891_709254_+	hypothetical protein	U5P4J6	Shigella_phage	1.7e-16	43.8
WP_154128435.1\|709275_710097_+	DUF2303 family protein	K7ZMK3	Xanthomonas_citri_phage	8.0e-54	43.3
WP_154128436.1\|710112_711033_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	3.2e-59	49.8
WP_154128438.1\|711029_712673_+	YqaJ viral recombinase family protein	U6C712	Ralstonia_phage	2.4e-94	37.3
WP_038231394.1\|713044_713680_+	phage antirepressor protein	A4PE61	Ralstonia_virus	1.7e-19	48.0
WP_154128441.1\|713746_714193_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	1.4e-33	52.9
WP_128723906.1\|714211_714487_+	hypothetical protein	V9IQX6	Stenotrophomonas_phage	2.2e-08	51.7
WP_169709952.1\|714486_715671_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	6.7e-94	47.3
WP_120279367.1\|716406_716562_+	hypothetical protein	NA	NA	NA	NA
715691:715736	attR	NA	NA	NA	NA
WP_004084058.1\|716558_716867_+	hypothetical protein	NA	NA	NA	NA
WP_004084284.1\|717182_717320_+	hypothetical protein	C8CLI3	Xylella_phage	2.3e-06	62.8

DBSCAN-SWA_4

789513 : 797949

Pseudomonas_phage(33.33%)

portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004083947.1\|789513_790029_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	7.3e-13	32.8
WP_004083945.1\|790562_790991_+	hypothetical protein	NA	NA	NA	NA
WP_004083943.1\|790987_791224_+	hypothetical protein	A0A0A1IV01	Pseudomonas_phage	6.3e-12	53.0
WP_169710337.1\|791213_794039_+	hypothetical protein	A0A1L2C8W7	Pseudomonas_phage	2.4e-57	28.8
WP_169709957.1\|794031_794544_+	hypothetical protein	G8CLC0	Synechococcus_phage	1.4e-08	31.2
WP_004083636.1\|794547_794967_+	hypothetical protein	NA	NA	NA	NA
WP_169710338.1\|795042_795738_+	hypothetical protein	NA	NA	NA	NA
WP_038230952.1\|796132_796759_+\|transposase	IS607 family transposase	A0A7Q0	Microcystis_virus	1.4e-63	62.9
WP_004083925.1\|796752_797949_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A7P9	Microcystis_virus	4.5e-66	38.9

DBSCAN-SWA_5

1055410 : 1079919

Xylella_phage(68.18%)

integrase,holin

attL 1045612:1045625|attR 1060915:1060928

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1045612:1045625	attL	NA	NA	NA	NA
WP_027700554.1\|1055410_1056778_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.9e-109	46.6
WP_004083658.1\|1057277_1058687_+	class II fumarate hydratase	NA	NA	NA	NA
WP_169710343.1\|1058827_1059847_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	7.6e-171	89.7
WP_049756312.1\|1060154_1060595_+	SocA family protein	K4NZT7	Burkholderia_phage	9.9e-11	33.3
WP_004083655.1\|1060691_1061234_-	pilin	NA	NA	NA	NA
1060915:1060928	attR	NA	NA	NA	NA
WP_004084093.1\|1061473_1061827_-	hypothetical protein	C8CLJ8	Xylella_phage	3.4e-22	54.7
WP_004083654.1\|1061823_1062606_-	hypothetical protein	C8CLJ7	Xylella_phage	4.5e-91	66.0
WP_041572637.1\|1062639_1063524_-	hypothetical protein	C8CLJ3	Xylella_phage	1.0e-83	58.9
WP_080513455.1\|1063513_1063903_-	hypothetical protein	C8CLJ3	Xylella_phage	1.2e-28	61.2
WP_004083651.1\|1064286_1065498_-	hypothetical protein	C8CLJ2	Xylella_phage	1.6e-119	61.7
WP_004083650.1\|1065501_1066257_-	hypothetical protein	C8CLJ1	Xylella_phage	3.5e-56	72.5
WP_004084211.1\|1066306_1066552_-	hypothetical protein	C8CLJ0	Xylella_phage	1.0e-28	80.6
WP_004083649.1\|1066521_1068189_-	hypothetical protein	C8CLI9	Xylella_phage	1.3e-225	59.6
WP_004083648.1\|1068185_1068593_-	hypothetical protein	C8CLI8	Xylella_phage	2.5e-32	60.3
WP_169710344.1\|1068596_1069826_-	hypothetical protein	C8CLI7	Xylella_phage	1.5e-165	71.6
WP_004083646.1\|1069863_1070721_-	hypothetical protein	C8CLI6	Xylella_phage	1.7e-46	49.3
WP_004083645.1\|1070740_1072762_-	hypothetical protein	C8CLI5	Xylella_phage	3.2e-298	77.7
WP_004083644.1\|1072764_1074183_-	DNA packaging protein	C8CLI4	Xylella_phage	3.0e-234	80.6
WP_021358615.1\|1074088_1074415_-	hypothetical protein	C8CLI3	Xylella_phage	3.1e-33	63.9
WP_004083643.1\|1075165_1075519_-	hypothetical protein	NA	NA	NA	NA
WP_004083642.1\|1075520_1075835_-\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	6.2e-07	32.3
WP_012337789.1\|1075827_1076322_-	lysozyme	A0A2I7RLY1	Vibrio_phage	2.6e-28	53.8
WP_004083639.1\|1076421_1076943_-	site-specific DNA-methyltransferase	A0A097EWK8	Mycobacterium_phage	8.6e-38	53.2
WP_169710345.1\|1076927_1079414_+	hypothetical protein	A0A2D2W222	Stenotrophomonas_phage	1.5e-58	30.9
WP_169709957.1\|1079406_1079919_+	hypothetical protein	G8CLC0	Synechococcus_phage	1.4e-08	31.2

DBSCAN-SWA_6

1396739 : 1444188

Haemophilus_phage(25.81%)