CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP052854	Xylella fastidiosa subsp. multiplex strain LM10 chromosome, complete genome	3 crisprs	DEDDh,Cas9_archaeal,WYL,csa3,c2c9_V-U4,cas3,DinG	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052854_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052854_1

1065882-1065970

Orphan

Consensus_repeat	Method
GGCGGCAGATCAGATAACCGTAATCGTTTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052854_1

>merge|NZ_CP052854|1|1065882-1065970|CRISPRCasFinder
GGCGGCAGATCAGATAACCGTAATCGTTTAGGTGCGGGCGCGTTTTCGTTGGTTTCCGGCGGCAGATCAGATAATCGTAATCGTTTAGG

>NZ_CP052854|1|1|1065882-1065970|CRISPRCasFinder
GGCGGCAGATCAGATAACCGTAATCGTTTAGG	TGCGGGCGCGTTTTCGTTGGTTTCC
GGCGGCAGATCAGATAATCGTAATCGTTTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052854.1\|WP_004083658.1\|1059151_1060561_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP052854.1\|WP_080513455.1\|1065148_1065538_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004083655.1\|1062565_1063108_-\|pilin	unknown	unknown	gnl\|CDD\|227304
NZ_CP052854.1\|WP_049756312.1\|1062028_1062469_+\|SocA-family-protein	unknown	unknown	gnl\|CDD\|226128
NZ_CP052854.1\|WP_027700554.1\|1057252_1058620_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP052854.1\|WP_169709989.1\|1067998_1068244_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_021358615.1\|1075781_1076108_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004083643.1\|1076858_1077212_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004084093.1\|1063347_1063701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004083654.1\|1063697_1064480_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004083647.1\|1070289_1071519_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371651
NZ_CP052854.1\|WP_004083648.1\|1069878_1070286_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_012337788.1\|1067193_1067949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004083651.1\|1065978_1067190_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272863
NZ_CP052854.1\|WP_004083645.1\|1072433_1074455_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293119
NZ_CP052854.1\|WP_169710155.1\|1051797_1054614_-\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP052854.1\|WP_004083657.1\|1060701_1061721_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271181
NZ_CP052854.1\|WP_004083644.1\|1074457_1075876_-\|DNA-packaging-protein	unknown	unknown	gnl\|CDD\|227852
NZ_CP052854.1\|WP_004083646.1\|1071556_1072414_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236892
NZ_CP052854.1\|WP_038210936.1\|1055813_1057082_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406

Protein	Function_ID	Function_description	E-value
NZ_CP052854.1\|WP_004083658.1\|1059151_1060561_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP052854.1\|WP_169710155.1\|1051797_1054614_-\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP052854.1\|WP_049756312.1\|1062028_1062469_+\|SocA-family-protein	gnl\|CDD\|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	3.67089e-59
NZ_CP052854.1\|WP_004083655.1\|1062565_1063108_-\|pilin	gnl\|CDD\|227304	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion].	2.93159e-27
NZ_CP052854.1\|WP_027700554.1\|1057252_1058620_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP052854.1\|WP_004083647.1\|1070289_1071519_-\|hypothetical-protein	gnl\|CDD\|371651	pfam11651, P22_CoatProtein, P22 coat protein - gene protein 5. This family of proteins represents gene product 5 from bacteriophage P22. This protein is involved in the formation of the pro-capsid shells in the bacteriophage. In total, there are 415 molecules of the coat protein which are arranged in an icosahedral shell.	3.97037e-51
NZ_CP052854.1\|WP_004083651.1\|1065978_1067190_-\|hypothetical-protein	gnl\|CDD\|272863	TIGR00028, Hypothetical_protein_Rv2872/MT2939/Mb2897., toxin-antitoxin system PIN domain toxin. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis, but additional members are found now Synechococcus sp. WH8102, etc. Inspection of genomic regions suggests these represent toxin components of toxin-antitoxin regions, potentially important to creating dormant persister cells.	0.00508667
NZ_CP052854.1\|WP_004083645.1\|1072433_1074455_-\|hypothetical-protein	gnl\|CDD\|293119	pfam16510, P22_portal, Phage P22-like portal protein. The portal protein of P22 and similar Podoviridae tail phages is a dodecameric structure consisting of a hip (2), a leg(1) and a barrel(3). DNA viruses such as bacteriophages and herpesviruses deliver their genome into and out of the capsid through large proteinaceous assemblies, known as portal proteins. Domains 1 and 3 are mostly helical and form the majority of the DNA-translocating channel. Domain 2 adopts an alpha-beta-fold characterized by two sheets of eight beta-strands, which cross each other to form a beta-barrel-like structure.	1.44999e-63
NZ_CP052854.1\|WP_004083657.1\|1060701_1061721_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	1.7917e-39
NZ_CP052854.1\|WP_004083644.1\|1074457_1075876_-\|DNA-packaging-protein	gnl\|CDD\|227852	COG5565, COG5565, Bacteriophage terminase large (ATPase) subunit and inactivated derivatives [General function prediction only].	8.93175e-33
NZ_CP052854.1\|WP_004083646.1\|1071556_1072414_-\|hypothetical-protein	gnl\|CDD\|236892	PRK11281, PRK11281, mechanosensitive channel MscK.	0.000193948
NZ_CP052854.1\|WP_038210936.1\|1055813_1057082_-\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	8.08685e-164

>NZ_CP052854.1|WP_080513455.1|1065148_1065538_-|hypothetical-protein
MAQLAVKGGIAAAEGAGYGALGETRTGENRLTNAGYGALGGVLGRGASGVVHGAARRLVREADPILRAATDIAQREGIPLHISQITQSTPLRTAASVAKYIPFSGADAAARNQQNAWNKALTRHVGDAT
>NZ_CP052854.1|WP_004083654.1|1063697_1064480_-|hypothetical-protein
MSAFRLFSRLNTFHGLSGQLVASGSLKFFDAGTTTPRNVYSDQRLSVNNGAVIPLDSSGRPNVDIWGDGAYFVEVFDVLGVKQGDADNVNIPGGGGTTIPALESSKYLTNNGAVLLWAAVREVPDPAGMGGKILGTDGANLLWQPLPSAPATPYTIGVASLKLGTLLIQWGRDVAPATGNYSTVKIITFPTPFSGLPYFMKASVTSALVTANSLAAESASNASTTGVHFNFVIADSKEKNSDRINSNIPFDWIAFGPTTT
>NZ_CP052854.1|WP_004084093.1|1063347_1063701_-|hypothetical-protein
MSQIPHANEPFLDAAGCVARSWRTYLASLASSETRQTLLQLQQQMSALQAALDSAHSAPPAAQLQAIDSLNMVGTLASGLATLRLEGDTATPGASCYYGTNANGVKGWHRLPTRVTG
>NZ_CP052854.1|WP_004083655.1|1062565_1063108_-|pilin
MEKRQQGFTLLEVMIVLIVVPVLAAITLPLYQNYIAKAQVTVALADITPGRVGVEMQLIKGQRTQSPSDISLHAPTTRCRSITVDVEAPRTRSLIDPNGKELVLPANSPMSSITCVINGTSAVDGKFIEWLRISDVGLNGSSADTDGNNIVGKWFCLTNVDEELRPIACKDSLADVPAYT
>NZ_CP052854.1|WP_049756312.1|1062028_1062469_+|SocA-family-protein
MLKLVYLAHGWCLGVHRQPLIDEPVEAWRAGPVIRSLYNAIKQYGSNAITERLPVRWFSWGRALKIDATAAAILASVWVTYRRYGGVELAEITRAEGSPWWTTWKGLNENAMDAERWVIDNALIQAFYAQKIKAHNAGEGEHAALT
>NZ_CP052854.1|WP_004083657.1|1060701_1061721_-|tyrosine-type-recombinase/integrase
MGRKPIKAGAIPRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIQRWAELEHAQITPAIAVTFRHVAERYRAEVIPTKAYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWRTSKVSANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQAADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATDKADLAGDMRQAQAQLGHASVTMTEHYVRKRRGAKVTPTR
>NZ_CP052854.1|WP_004083658.1|1059151_1060561_+|class-II-fumarate-hydratase
MSNSDRYRIEHDSMGDLRVPIDALWGAQTQRAIENFPISGRSMPQGFIHALGFIKAAAAKVNAELGLLPKSMAKEIEAAALDVAAGRYDAEFPVDIYQTGSGTSSNMNANEVIATLAMRATKGPIHPNDHVNLGQSSNDVVPTAIRISATLAVQGRLLPALKHLRKMINKRARGLGSVVKTGRTHLMDAMPLTFAQEFGAWSAQIVSAEARLNDTLKRLHRLPLGGTAIGTGINTDPHFGRNAVKVLSALTGIHFESANNKFEGLAAQDDLVELSGQFNALAVALMKIANDLRWMNAGPLAGLGEIELPALQPGSSIMPGKVNPVIPEAVVMVALQVIGHHTAVTVAGQSGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESDLNPAELARLLDPTALTEGGIHVLGGDGG
>NZ_CP052854.1|WP_027700554.1|1057252_1058620_-|adenylosuccinate-lyase
MSHLPLLALSPLDGRYLSKVDTLRPIFSEYGLIKARVKVEIAWLLALAAEPNIVELAPFSVAAQTRLRALADGLTIEHAARVKEIEHTTNHDVKAVEYFIKEQLKDDTELRPGLEFVHFACTSEDINNLSYSLMLQQARDDVLLPTLDGIATHLRTLAHTQAAQPMLSRTHGQTASPTTLGKEIANVVARLERQRHQIATIALSGKINGAVGNYNAHTISYPEVNWPALAQRFVESLGLVFNPYTTQIEPHDTIAEISDAIRRANTILIDLARDLWGYISLGYFKQKLKEGEIGSSTMPHKVNPIDFENAEGNFGVANALFEHFSTKLPISRWQRDLTDSTVLRALGTAFGHTQVALDSLNKGLHKLSPNPERIDADLDVAWEVLAEAVQTIMRRHNLPNPYEQLKALTRGQGITADSMRAFIETLDLPTEAKQRLHDLTPRAYTGLAKQLALNI
>NZ_CP052854.1|WP_038210936.1|1055813_1057082_-|cupin-domain-containing-protein
MKRSVPLFPFEIQATDQYPLGMPEEYFLHHYWQKRPLLIRNAFPDFHSPVTPEDLAGLACEEGVLCRLVRHNRNTDTWEVRHGPFQEEEFPKLPDHDWTLLVQDVDKWDQDVRALLEHFRFLPRWRIDDIMISFAATHGSVGAHVDQYDVFLLQGQGHRHWHIDASVAMGRKAPPLDFRNDVDIKLLRQFTPTHEWVLAPGDMLYLPPLVPHHGVADDPCLTYSLGMRAPSSAELISDWLDTLISEADEAVRYQDADLTRPEDPYEIDAAATDRAIAALNALRMHEDPEQLGNWFGRFITTYRSSNAIVPYTTTPQRETLEHALASGSELIRHPWSRTAWRRASHDATLFCSGLEFTLTSQDAQRLAAAERIDIHVYTALSERGRAALFDLVGQGHYQLDDNTLEKDARNKEASSATACPED
>NZ_CP052854.1|WP_169710155.1|1051797_1054614_-|2-oxoglutarate-dehydrogenase-E1-component
MDNLIKQFTQSSPLAGGNAAYIEDLYEQYLVLPNSVDPKWKAYFDGFKGRDAGDIPHSAVIAHITDTAKQSVKQGPSDERERNIGRLITAYRSRGHLGARIDPLGLAPPSNPPDLDLPFHNLSQADLDNEFSTGGIGGQPRMKLRNLLAHLKATYTDTIGTEFMHISEFEQRQWIYRRLESVSGKIASNATNRKRILERLTAAEGLERYLHTKYVGQKRFSLEGGDALIPLMDTLVRQAGNNDVKDIVVGMAHRGRLNVLVNTLGKNPRKLFDEFEGKFEHAHHDRAHTGDVKYHMGFSADIAVGDGKQVHLALSFNPSHLEIVDPVVAGSVRSRQERFGDTERKTVLPILIHGDAAFAGQGVVMELLQMSQARGFAVGGTLHVIINNQIGFTTSARDDARSTPYCTDVAKMIGAPVFHVNGDDPDAVVFVAQLAYEFRQQFKKDVVIDLVCYRRWGHNEADEPAATQPVMYQTIRKHKTTRELYATKLEGEGVIAAGEAKAMVDDYRAKLDSGKFTTELASKHTDEFVIDWSKYLSGKLEDTVKTSVKRQTLNKLAALINTTPATVELHPRVAKIYEDRIKMAAGEQPGDWGFAENLAYATLLAEGHKLRLVGQDAGRGTFFHRHAILHDQKTDSYYLPLRQLVSNPDDATVIDSLLSEEAVMGFEYGYSTTDPNTLCIWEAQFGDFANGAQVVIDQFIAAGEVKWGRISGLSLFLPHGYEGQGPEHSSARLERFLQLCALENMLVCVPTTPAQAFHMIRRQMRMSTRKPLVVMTPKSLLRHKLAVSTLDELANGKFQHIIPDDAADPKHVKRIVMCAGKVYYDILENQHKRSQNDVAIIRIEQLYPFPRALLASELKRFNKATDVVWCQEEPQNQGAWYQIKHHLQAVLAHGQRLHYAGRSSSPSPAVGHMAEHMAEQESLVADALLNPFNDHVAE
>NZ_CP052854.1|WP_004083651.1|1065978_1067190_-|hypothetical-protein
MATPLEIYDYVKRGFNEGKQRATNRLLGQTLNATDPTQRQAYLRALIDTDPQAGYALQQQFQKNAQAAQEKQQQTATELARAWLSTANITPQQRQNFYNTFITPQSQAAKLPIPEQYDPEAFDQEAKARIAMTQTGQSAQPYSLAPGARRYDANNQLVAEAPLQEKPHYDADRAGFVQLASDGTPVFKPVPGITPKPEPSQQLTPYQQAQLSLGQARLALDTETRRDAAETKKAALQAKAEQNQQAALARHHDAVESATTLIGAIDRLRNSPGYKGLGTPLGGLSAAFPYTDVRDAQAQLEVLKAQIALGVMSKLKALSPQGATGFGALSEKELAVIQNSIDSLSPGISHAKLEQSLNEIQTTMEKIKNTPPPYSVGYIIQRGGKQYRVVGGTPDDLYVEEVP
>NZ_CP052854.1|WP_012337788.1|1067193_1067949_-|hypothetical-protein
MWSALIPGAASLIGSLIQGNAARRAGNAQARASQEAIAEQQRQYNQARQDQLPWLTAGQNALTGQQAVLSGDYSGFEKAPDYTYALDQGLQGLDRSAAARGSLYSGGHQADVMKFAQGLASQNLNNYWNRLTGLSGSGQAAASQLAGLGQSYAANVGNQYNNAAAARAGAYYQTANNTTDALASLGNAFGNWYQGRNPSNTNATTYTDDYANTLAGSNANAYANNPYANNAFIRNPYRRNQWYASNQGLGG
>NZ_CP052854.1|WP_169709989.1|1067998_1068244_-|hypothetical-protein
MVLLYGLSNMTRTVLLRYSKDGGCNWSTWVARDLGDIGVYQKRVRRYRLGQGRRWVFDIRITDPVVANLLAMSLQTAPGPA
>NZ_CP052854.1|WP_004083648.1|1069878_1070286_-|hypothetical-protein
MSTVAEIIRDALGYLRVLDANEAAEAEDATTAMRMLNLMMHSWQANNLALGWHEVTNPTDILPAPKQAEIAIACNLAVLLAARYGAPLDQAVIDHARYEKANLISAAIRAEDARMTYDLPRPAQQRVRDTVEDDP
>NZ_CP052854.1|WP_004083647.1|1070289_1071519_-|hypothetical-protein
MGTQALTHQMIARESAKMLVEQNNVVTNINTTRSKEFGEEINGYKKGDTVKIMVPPMPVSFSGANFAGDRFANAPSVSETYVNLVVDQQYHVPLTFTAKEKKLDLTDFSKRFLRPAMNSLSSKVNAYLLKSMYLQTPNVVGTWGTIPGTRPPWRAAASVLDNHLAPEADRCAHFSTDANDALAETNVTLFHTSDEIRGEFSKNAVGMFAGLEFYKQLALPTHTNGPGSGLVVTGTGNQGATLAIDDTKGDTRTALVVLSKGTIFTLAGVFETHPITGEATTRLRQFLVTTDYRRGEYGVTIYPPIVLTSTTTIGTVTALPKDRTALTIVGAPSTAAVQNLVFHEDAFATAFVPLPVLANCDGYTATVKSISVRVMSFGDGKADVEHTRIDVLFGTPVAVRPDHACRVTQ
>NZ_CP052854.1|WP_004083646.1|1071556_1072414_-|hypothetical-protein
MTEDTTTSPNVAATVDASQLPKNDAQAEQLEQQQHTPDTEHTTNDAELTQQDAEKKQRYRSREFIQRINNENAELRQRLDALERQYHTPTPRPGTPPPDGAPKLEQYDYDLNAFLDARLNYLRQQWQQEQQQTQEERQQQQAYAAYQQRLTAFVDTHQDFYETVSAIAPELLPVELQAAIIAHEKGPEIAYHLANNEDELWSLASMRPEVLAAAVERLAARLNTAPPAVPQKNVVTLTGRTHSKPLSNAPPPPPTVSGRSPTDIPPEKMTDEDWYARDVEKRRKR
>NZ_CP052854.1|WP_004083645.1|1072433_1074455_-|hypothetical-protein
MASSTQKDTDALTEMRSRYQLASDYCRDLYDQSRDDITFVTVPGSQWDPEHKRRRKNRPSYEFPKLRLHTQQVINEMRQQRPSAKVRGVEEADHGLAEIMQGICKNIESTSNADHAYDIAYEKAVKGGFGALRITTDYLEEDDFELDIRIKAVRNPFAVKFDPAAIEIDRRDANYAFVEELLPRADFERRFPDADVTDFDGDTRVKGWRDAKQIRIAEYWWKEPRKRELLALSDGRVIFADDIAKEAGVTEADTKAFLAQTGIQIQRTRTVEGHRIRMRLTNGQSWLTKPYDFPCKFIPIIPVWGNIENIDGTDYWSGMVRFSKDQQRLHNLHRSALVEAVAKAPKAPFIVDPDMIAGHETMWKDANAEDFPFLLANIVKCGGAAPRRVEQAQVPAALIQLAGMDNDDVKASTGLYDASLGARSNETSGIAINSRKQQGAVATFNYVDNLAYAVRYTYEILVDMIPRVYDTPRAVRVLGEDGGEKWKQLYQEVQDPMTGRRVVLNDIGKGKYDVTVTVGPSYATQRMEAAEAMMQLAAQVSGAAPQIAAVLAYAGVQNMDLPGMDEVLAAFRKLLVSQGVLPPKEGDKPPEPPQPNPMQLAQLKKVTADAGLSEARAQHQQAEATQQQLRNAVTAQAVGAPMPDPGGMPQQQQQQQTPPPPQGGFLLPTSPPT
>NZ_CP052854.1|WP_004083644.1|1074457_1075876_-|DNA-packaging-protein
MMPNWMQPLQSLPPKQALALLLEEKTRRRCTNQLADYAPYLKQSAFHALGATVRERLLIAANQSGKTLCAGYEAAIHLTGRYPDWWQGKRFTSANHGLAGSETGELTRRGVQRVLLGRDPKTELGTGAIPGACIDAVTWARGVPELVDTIYVRHCTGARSSVSLKSFDQGREKWQADTVHWVWFDEEPPEDVYFEGITRTNRTFGPVFMTFTPLKGMSNVVRRFLTEDAADRGYVQMSIEDAEHYSAEECARITASYPPHERDARTQGVPALGSGRVFPIAQEEISVAPFAIPAQWALIGGMDFGYDHPFAAVKLAWDRDADILYVVCAYRKRESTPIIHAAALKPWGVTLPWAWPHDGLQHDKGSGDQLAEQYRQQGLAMLPQRATFEDGTNGLEAGVTEMLDRMHTGRLKVFSHLAEWFEECSLYHRDNGRITKRHDDLLSATRYAMMMRRYAKITNPVQIAVYEYTVDY
>NZ_CP052854.1|WP_021358615.1|1075781_1076108_-|hypothetical-protein
MVWLKGTSGNPSGRRPGSKNRNTQAIKDAFLEAFDRLGGVPALAKWARANRTEFYKLAARLIPTETHIAGDFALKSADDAELDAAIAKLAAEAGISVVTRGKNAPPLH
>NZ_CP052854.1|WP_004083643.1|1076858_1077212_-|hypothetical-protein
MIVAAVRRIAAYLPSARLLFSYVLIASLVTLVAHAALNLTGDTKLEQRLSQPNQKLTYMESVLREQAVINAKQEAAITQLRVLHDNDSRTLSRLQTDIRWLMAQRQAPPCRRAGGVP

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Crispr_ID: NZ_CP052854_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052854_2

2089153-2089253

Orphan

Consensus_repeat	Method
GGTGCCTTTGAGGCCTTTGCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052854_2

>merge|NZ_CP052854|2|2089153-2089253|CRISPRCasFinder
GGTGCCTTTGAGGCCTTTGCCCACCAGAGATCCAAGGGTGCGCAGTCCAGAGGGCATGGTCATCGCCAACACCAGTGCGGTGCCTTTAAGGCCTTTGCCCA

>NZ_CP052854|2|2|2089153-2089253|CRISPRCasFinder
GGTGCCTTTGAGGCCTTTGCCCA	CCAGAGATCCAAGGGTGCGCAGTCCAGAGGGCATGGTCATCGCCAACACCAGTGC
GGTGCCTTTAAGGCCTTTGCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052854.1\|WP_004086805.1\|2092329_2093892_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|227798
NZ_CP052854.1\|WP_020851759.1\|2096297_2096897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086820.1\|2080523_2081966_-\|DUF2163-domain-containing-protein	unknown	unknown	gnl\|CDD\|378314
NZ_CP052854.1\|WP_004086814.1\|2085649_2085817_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086806.1\|2090017_2092333_-\|Clp-protease-ClpP	unknown	unknown	gnl\|CDD\|132927
NZ_CP052854.1\|WP_004086802.1\|2093888_2094263_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086810.1\|2087472_2087793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086811.1\|2087002_2087476_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086816.1\|2083135_2085649_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP052854.1\|WP_004086813.1\|2085813_2086260_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086809.1\|2087789_2088575_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086807.1\|2089585_2089945_-\|DUF2190-family-protein	unknown	unknown	gnl\|CDD\|227758
NZ_CP052854.1\|WP_004086792.1\|2098756_2099812_-\|Zn-finger,-CHC2-type	unknown	unknown	gnl\|CDD\|223435
NZ_CP052854.1\|WP_004086826.1\|2089288_2089513_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086812.1\|2086256_2087006_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086822.1\|2080104_2080533_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086818.1\|2081955_2083143_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_004086800.1\|2094201_2096301_-\|phage-terminase-large-subunit-family-protein	unknown	unknown	gnl\|CDD\|227812
NZ_CP052854.1\|WP_004086794.1\|2097293_2098760_-\|virulence-factor	unknown	unknown	gnl\|CDD\|227832
NZ_CP052854.1\|WP_038231455.1\|2099810_2100212_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP052854.1\|WP_004086805.1\|2092329_2093892_-\|phage-portal-protein	gnl\|CDD\|227798	COG5511, COG5511, Bacteriophage capsid protein [General function prediction only].	0
NZ_CP052854.1\|WP_004086820.1\|2080523_2081966_-\|DUF2163-domain-containing-protein	gnl\|CDD\|378314	pfam09931, DUF2163, Uncharacterized conserved protein (DUF2163). This domain, found in various hypothetical prokaryotic proteins, has no known function.	3.67479e-23
NZ_CP052854.1\|WP_004086806.1\|2090017_2092333_-\|Clp-protease-ClpP	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	6.11396e-58
NZ_CP052854.1\|WP_004086794.1\|2097293_2098760_-\|virulence-factor	gnl\|CDD\|227832	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only].	0
NZ_CP052854.1\|WP_004086792.1\|2098756_2099812_-\|Zn-finger,-CHC2-type	gnl\|CDD\|223435	COG0358, DnaG, DNA primase (bacterial type) [DNA replication, recombination, and repair].	1.11994e-80
NZ_CP052854.1\|WP_004086800.1\|2094201_2096301_-\|phage-terminase-large-subunit-family-protein	gnl\|CDD\|227812	COG5525, COG5525, Phage terminase, large subunit GpA [Replication, recombination and repair].	0
NZ_CP052854.1\|WP_004086807.1\|2089585_2089945_-\|DUF2190-family-protein	gnl\|CDD\|227758	COG5471, COG5471, Uncharacterized conserved protein [Function unknown].	3.40108e-45
NZ_CP052854.1\|WP_004086816.1\|2083135_2085649_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.64093e-06

>NZ_CP052854.1|WP_004086809.1|2087789_2088575_-|hypothetical-protein
MTDLLKITVDADAMLGRRFTALESQHLPFAIVQACNTTAFQIRDTWKRTALRIFDRPTPFTINAALYKKATKQTLWAEIFLRDEAFKGTPPATYLLPQVEGGTRRLKAMERLLMSMQIMPRHMFAVAGDGAPRDRYGNVNVGQVRQILSQLRAGLEAGYISNETPERKARRLKRQRQRGGGGSYFVVKKQRGRLRPGIYERVTFGSGSAARSMFIFTTYVHYTPRYNIFGLAQKEWDRMMPFYFNRELQKAIDTSIYRGRA
>NZ_CP052854.1|WP_004086810.1|2087472_2087793_-|hypothetical-protein
MSEATFKHAFDAAFFDAWADVVGSIDGTYTSPRGVITPVQVLLDQGVLQFGDDLMPVSAYSTFITFRRDQIEPEPNATLTLAQTTYTLAQRVDSSDASLSKWAVRP
>NZ_CP052854.1|WP_004086811.1|2087002_2087476_-|hypothetical-protein
MNSPRATLLSSVEAVLTQITTAAGYLTDVGRTFTLEPAPVLGETTDACITVIWTRQERATIAALAHTHRLTTFQVIAKVPVSFSDAQARLDAITTDIETAMNAKQAHFPVGFHCPQYQVAEPLIPQQHTVGWIGVCITYTSHIPIHPSAPSSTEHQP
>NZ_CP052854.1|WP_004086812.1|2086256_2087006_-|hypothetical-protein
MTHTDYSYVGSGQVLIKEHGAAAPFLPIGNCSKLEFSPQVNTLQLQDFTNPGGGIRNRIDRVNDVQFTLTFHDFSAENFARFLRGTSTVTDLGTVAAEPVVGYVGGWTPLAKIAATITAIKPYGGGTPYTAGEDYLLEHGGLTIPLGSTIPIPEPGAPNIQVDYTFARHTVTEAFVHAAQQYTLVFTGMNEARSGKPVRVIAHKISGGVLSTLGLLGEDYGAGDVSGSLLADTTKEAGLSKFFQVVVVQ
>NZ_CP052854.1|WP_004086813.1|2085813_2086260_-|hypothetical-protein
MMTPDTLDILDPPPHLVPFRGESLHIRPLTIGQLPQFVRLTRPLLDALLDIPLDTLPQADAALLDALLTLIAEHGDAAIAAAALLTDKPIEWIQAGDPAEFIALVQAIFAVNRDFFTHRLTAQPVTPVPLAAGTGPIPSNTSLSTATQ
>NZ_CP052854.1|WP_004086814.1|2085649_2085817_-|hypothetical-protein
MTQIKGYTLAQLRAFSQAAGRAAARRQRDAAITLRAAQYAQSDFERYIAAMEKDL
>NZ_CP052854.1|WP_004086816.1|2083135_2085649_-|hypothetical-protein
MASSRGATLRVRISADLADIKQGLGLLRGELAKVKVAASSAAPQTASWTRGIDSVRQALGNLAGAYVGVQTITAAIRGVFTALGQMDRMDKFVQMSGVSAENISKLAYAAKSSSVDVETLAKGIGRLNKDIISGDSIIHKLGISLKDAAGNTRDVSHVFGELADIFAQLPDGAEKAALAAKLFGNRMGPGLIPVLNLGKDGLKEFGDQAEATGNVMSTQAAQAASHFSDQLGLLKSQATGMFNIAAQQLLPVLTSVVKTLNDSGEAAHSAATGGRALAAAFKVVVAAGIIVKNVIEGMVNVLAFLGTTAFNVGKFITQSLVGSFRLLGDAVKGLVSGRNPLDVFNAYLSGAAQRAKQSQADLADMKNGIVGGFAAAKQGVFESARDILNGVSALFSSIENDTKGVEQSANRASTATQGLLDKVRRLLAGEGGNTAHKNDTRDQLAAIAAAASLVQDEVKRAITALDQQFSDIKDADKSAAAITAYYEKRITLQQRLIDLQIQQARAELALATESGKRLQIEAKITLLERDRAQVAIDMARQRFKALQELNQKIADSFGHRLSGITSNLATHESSISAQVNAGMLGMAEGERQLNTLRARALETLRALRTEQQQYLDSMKADGKDVTDAVQGLAQIDQAIAEVTARQQVWRSHLEDISSGALGGFFNDLIEGAKSFKDAFTDMVRSFLQGVAQMMARQLALKAISNIMASLGGGASIGALLGAKVALAHSGGMAGALRLHRNNINPLLFGTAPRYHSGGVAGLHHDEIPAILKRGEIVRTKQQEAALQTRLNAGQGAPGSLHNIIVFGEDELANALAGTAGEKVIVSHVRRNRGAING
>NZ_CP052854.1|WP_004086818.1|2081955_2083143_-|hypothetical-protein
MADPVAWTFAPGGEYTETFDWLTDVLQAPTGGTQHRRLRQSPRATLRFSALESGASRRWMDVLLRAHSAARWWVPIAIDARALAVTAAAGATTLVVAVQGARFTQDGHVLIIGPDPRHYEVHRITALGEHTLTLATELSFSWGVGTRLYPVRLGRLSEPPQVGRFTADDSALVSLQFRLEDPLDSSAVIPGATYRGYPVFDTLPPVWTSDPVWVPHRHTHVQDDTISTPWMTDTAGVALGTTTMQYAPDDAAAILTFRSILFALAGRWAPVWVPSWIHDLPLAADVRAGQRTIDILGPLLSTPSGALQANRRDIRIALYSGAVWYRRITAVTSRGSQIERLTLDSRLPAAFTLTQVKMISFITFSVQDADTAVLRYFGPEAAQCQIVWKELHHAL
>NZ_CP052854.1|WP_004086820.1|2080523_2081966_-|DUF2163-domain-containing-protein
MRFSAFELGRFTGRPVRLFVFTRQHLTWRFANSDRDIVSGGFTYLAARIDRSDIQHTTEREKDQITITFPYLLNPAADPLPVTQELGNQWRPYHPVDVIRVVCMVMHVGDTDPPQVEWMGRVIQPRFSDTEMELTCAPHSSIALAHNQGAKFQSNCWKTVYSTGLRGCNLSPGEHRVTGRVARIEQLPTDPPQGAHVLVPDMAAHLASLVGQVAAWTYEAQVPHSGTVASVIKFHVRLNNVTDIDVGTVLHWTAADGVAHRGTVAARFGTVVVLTVTDGITAATVCHWSVAQARQGAATIMQAYHAYDWVSQAAGGSSSGFSWDDASGLHDGHSGTAWSVTYTTRSALVLSDVTGLEEGSSITVLLSGSGVSGTLSAVAGLQLTATQFASAAYSLEGGTLTYTDANGLLIRRSVASHTLGSATLTLSAGGPNPVVNDEITVLPTCPRTWDACAARGNTIHFGGAVYRPLHTPEGVSMSWG
>NZ_CP052854.1|WP_004086822.1|2080104_2080533_-|hypothetical-protein
MGLIARLRRWYHLWVWRLRYWWYDTPSGVCAQHWALGLGVLVLIVQLVRVCVAAALPAPHGAPAQAVYWWVWQLAIAVVAAYVSAALRPKPEPVKPQQAQVPTVQDGQAVKHHFGTVWVGDEFILAWKMQGTIPIKTKGGKK
>NZ_CP052854.1|WP_004086826.1|2089288_2089513_-|hypothetical-protein
MFSNERTDHKIASAVGAAMVKSAPPVSAAVLTGDTLIEWMTCTYILLQVVYLLWKWRVDWKRRKVKQQPGADHA
>NZ_CP052854.1|WP_004086807.1|2089585_2089945_-|DUF2190-family-protein
MANNFIKPGKHLTYTATTAIKSGSVVLFGEELCVALNTINAGDSGELAHEGIFELPKAKGTGIREGTRPVWSVTTHEALTGGSPEKGDLINSCLAVETALAAAVKVKVKLLPGCGRWQA
>NZ_CP052854.1|WP_004086806.1|2090017_2092333_-|Clp-protease-ClpP
MTSTAHPTHRLADTLDPMTGAPMPPQARPPSVVALHTSNPKQAELLLYGPIGDDFWEEGVTAASIIAQLSTVTAPLIHVRINSNGGVVSDGLAIYNALTAHPATIHVTIDGVAASIASLIAQAGTTRRVYPNSLMMIHGPQTGGWGFAEDLRHTAAMLDTMAAAMHTAYTTGATHPEAIRRMLNDGHDHWLTAQDMIAAGLADTIIDLAPQHTPAATPDDTATATAAALLSYLQAIATHPQDTITTALRHHIQATVTPSAFACLCSTQQHALITHIEDPTMKHHLNVILAQAGTTPPLPLNTPASSPPTGHTTPPPHGTTPPPPPTPGSAANDDPLAALEARNARIRDVFAAFADVPGVHDLEASCLANPRLSVEHAQAQLLQRLPGGAGPLAATPRHGIHHLHLVHDEHTTRRKRVADGILARAGILTGPEADAARQDNPAAVDALWILAEQTLKATGTNTHGLDREKVSRMAFSESTSDFPVILENVMHKMLLTSYRLQSYTWMRFCATGSLSDYRPHHRYHMGSFSDLKKVNENGEYENGVLSDAEKETIQAVRKGRILQITPEVLVNDDLSAFTRPTRYLAQAAARTIEKDVYALLALNTGKGPIMSDGKPLFHADHRNIPTAAALSVESIDAARQLMAQQMDVGGNDFLDIVPALWLGPLSLGSKARELNAQEYNDEAGKQQRKPNVVRGLFSDVVDSPRLKENAWYTFADPTLEPVIEVAFLNGVQTPTLEQDTNYRTDGLSWKVVHRYGVAAVGWRGATRTSGA
>NZ_CP052854.1|WP_004086805.1|2092329_2093892_-|phage-portal-protein
MTTAPPRLQRFVAAFDRSLLQLAPAWAASRAQSRVKAVAYRQAYEAAEKTHLRQASRDFGSGNTIVTMTGAALRNQARHLDRNHDIISGGLSTLVQNIIGPSGINIVPTPRDVDGNLVESLVDAILPLYQAWSKRPEVTWMHDWPSVQRLLARTWLRDGEAFVQELRGFLPTLQHGSGVPFSIEMLEPDLVPLDYDDPSQHILQGIQRNAWGRATGYYIYTQHPGDPDVLLPEKKLVPSHLIRHIRTIDRIGQVRGISLLASTFTRIEDLKDYEESERIAAKIAASMAAVIIKGDPSQYDPEKYASTGQRMMRFQPGMVFDTLNPGEKVDPIDSTRPNPNLESYRDGQLRAIAAPMRISFSSLAKNYNGTYSAQRQELVEQYGAYGVLAHEFISQMVRPLYERLIAIAVTSGALTLPPNVPLANALGADYLPPSMPWIDPLKEINALTAQVQAGVRSLSSVIAERGGRMYDTLEQLSLDKEWAAERGLTLSVFPNATASPPPATTDVDEGDVPQDQAATA
>NZ_CP052854.1|WP_004086802.1|2093888_2094263_-|hypothetical-protein
MKCHRFLTAALAPTVGTSVYEPHDAPHQSPHHQAYRVASQPTPETHMSLATDQVALLKDAYRKVLLGQSVRYGERQVTRADAKWISDELDKWLRRATAEAAPSTSGTVRIAIADFRRDSGGDAP
>NZ_CP052854.1|WP_004086800.1|2094201_2096301_-|phage-terminase-large-subunit-family-protein
MSLDDFPDIQLANAYQTVSTAWQHAWEVPPRLEISQWADAYRKIARGSGAEPGQWRTDRHPPLREIMNCLSDHTPVQQVSFMKSGQIGATEIGINWVCYVIDRGIDSMIVTQPVKDLARTWTVAKFDPGVLDMPPLLNKLTTNNTFEKQYPGGTLFVKWANSSSQLRQITACYAFLDEIDEYPRNLNNQGTADQQIAARIMSHGERGKIYRACTPTVTGGSAIETNFLDGDQRHYHIHCPHCGGEQVLDLEHLQPDGTFACAVNGCIIQEHHKNTILKERGSGGTAFWHPHNPSAPPDHRSYHLWAAYAPLGLGLSWKQIADKWAEAKRDPSKLPGFTNLILGLPFQGERDVRDAHEVATLAEPGVYRGLVPLGGLVLTAGVDLAHDRAEIHLIATGRGQRHYIVDYAVIDLDPTVLDSYTDLDTYLRGTWKTACGIDMPISAVAIDGGNWTETVAQFVKQHVGWSGQSRILETPHGFLKQTLYLVRGRAEIKSDRAVYRPSKTTVDERGKTLARDVGVWGVGTSVLKHMIYGWLGAALAAKDNAAQTGTAEDISARMLRFPGGRGDDNHDPLHPDPGALPEHYFAGLTAEYFDKDAGRWIKPRGVRNEPLDTAVYALWATLAPALKVDVMRESQWEALQALYQPTNGSLFDPPAAPPTDTARGTLRSVTATPAPPSAPHEMPPLPNSGFGSDRWNKRL
>NZ_CP052854.1|WP_020851759.1|2096297_2096897_-|hypothetical-protein
MGSVTTMTTAEYAKHRGVSDSYIRRMRRKGNVILGDDGRIHVNASDTLLDGMTHPVQGGKRGMTDPPASGVPPFTVMTPQGIPVQEAVRRERVARALKAELDLGKQAEQLTCVDEVNRAVFTLVRQALNQLRGMSGRLRKTLAAETDAGKVTQIIDTDVTHICKQMQDAATALLKTNTPDAEPVEANDTLEFEEEGVSG
>NZ_CP052854.1|WP_004086794.1|2097293_2098760_-|virulence-factor
MTRPVITILDGGKGRSHGGGGGHGGVPGSDDWKQQLTRTRDGHVEGTMHNLITIIENDERLKALFWLNDSSNQVVMARPAPWQGSTRDEFVDADSSELAAWLQHPERYGMKCSDDNVLKAVIAVARRHRRHPIREYLTGVQWDGTPRVETMLIDMFGASDSTYSRQASLCFMVGAVARVLWVDPKNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCWGVEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPNSYRRECVFVGTTNDREYLKDATGGRRFLPVRADGNVDVSRIVAERDQLWAEAVQLFLDRFPYWVLPDDAPAEQAARYIGDSWEARVEKFLAGQFRKTVDGKEIAPQRLKLTAGRVLWTTTDELLEFAIGMDPARHDRSAQMRVANIMKRLGRDPVQGDACVEDTWDHLRKRWPDTKTREQRWVREGACINELTPVSKPLDDNGRDDAPDF
>NZ_CP052854.1|WP_004086792.1|2098756_2099812_-|Zn-finger,-CHC2-type
MTRVDTQALRARIDLVEVVGRYVTLQRTGAEYTGLCPFHHEHTPSFTVISHKGFVHCFGCGAHHDAIGFVMRYLNVDFREAVRQLDSGALPQAEQQTQRQRPEYVPDMVWVPLLPVPEDAPEVMGDAHWTVPIWNPKRGRAAPLKVQRLDAYRDAQGRLLGYVARAQIKDRDTGALKKWTPTLTWCVSPTGARQWCLQHFPEPRPLFGLDTLAVKPDAPVLIVEGEKCCAAGARAWPQYAVVAWPGGTNGIRKVDWTPLAGRDVVLWPDADEVGRKAMLGNRTDAGDFKPGVAHYLSRVGVRSIGMIDTHGCSKGWDLADAFEKDGWTPPQAAAWAAARRVDVNVVRGGGR
>NZ_CP052854.1|WP_038231455.1|2099810_2100212_+|hypothetical-protein
MLPPRLTPLRLLTVDLHSPLHAKVRGDVFPASWLGRTAGVRAHLRQRLDVRPPLRPWLITERFDGRTQTPRHTHGPPRNSNTPCLHRDASASTRIRSRAANAAAPLTPGSLEYKASSAARNPAHCRGVIVTLP

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Crispr_ID: NZ_CP052854_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052854_3

2450528-2450605

Orphan

Consensus_repeat	Method
TCGTGTACTTTTAGTTTTATCGTGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052854_3

>merge|NZ_CP052854|3|2450528-2450605|CRISPRCasFinder
TCGTGTACTTTTAGTTTTATCGTGTACACGAATCGTGTAGTCTGTACACAATTCGTGTACTTTTAGTTTTATCGTGTA

>NZ_CP052854|3|3|2450528-2450605|CRISPRCasFinder
TCGTGTACTTTTAGTTTTATCGTGTA	CACGAATCGTGTAGTCTGTACACAAT
TCGTGTACTTTTAGTTTTATCGTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052854.1\|WP_038211082.1\|2464614_2466243_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP052854.1\|WP_004084659.1\|2462478_2463819_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|274368
NZ_CP052854.1\|WP_004084660.1\|2463836_2464532_-\|phosphate-regulon-transcriptional-regulator-PhoB	unknown	unknown	gnl\|CDD\|131209
NZ_CP052854.1\|WP_004084647.1\|2443066_2444002_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP052854.1\|WP_004084654.1\|2454488_2455145_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_CP052854.1\|WP_004084643.1\|2440370_2440679_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP052854.1\|WP_004084655.1\|2455167_2456526_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP052854.1\|WP_004084651.1\|2448192_2449071_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP052854.1\|WP_169710203.1\|2446139_2447357_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP052854.1\|WP_004084650.1\|2447353_2447932_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226933
NZ_CP052854.1\|WP_027700130.1\|2460270_2462367_-\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NZ_CP052854.1\|WP_031345908.1\|2458675_2460202_-\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP052854.1\|WP_004084656.1\|2457162_2457915_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP052854.1\|WP_004084646.1\|2443976_2444684_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP052854.1\|WP_004084652.1\|2449259_2450060_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP052854.1\|WP_004084644.1\|2440965_2442021_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP052854.1\|WP_004084653.1\|2451127_2452888_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|131259
NZ_CP052854.1\|WP_076613195.1\|2458036_2458267_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052854.1\|WP_020851257.1\|2444664_2445930_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP052854.1\|WP_004084645.1\|2442017_2443073_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593

Protein	Function_ID	Function_description	E-value
NZ_CP052854.1\|WP_038211082.1\|2464614_2466243_-\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	9.31178e-160
NZ_CP052854.1\|WP_004084659.1\|2462478_2463819_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	9.11438e-155
NZ_CP052854.1\|WP_004084660.1\|2463836_2464532_-\|phosphate-regulon-transcriptional-regulator-PhoB	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	4.91033e-127
NZ_CP052854.1\|WP_004084647.1\|2443066_2444002_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.84481e-17
NZ_CP052854.1\|WP_004084654.1\|2454488_2455145_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	2.9867e-79
NZ_CP052854.1\|WP_004084643.1\|2440370_2440679_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	8.06015e-12
NZ_CP052854.1\|WP_004084655.1\|2455167_2456526_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	3.75798e-106
NZ_CP052854.1\|WP_004084651.1\|2448192_2449071_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	3.6373e-138
NZ_CP052854.1\|WP_169710203.1\|2446139_2447357_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.38539e-21
NZ_CP052854.1\|WP_004084650.1\|2447353_2447932_+\|response-regulator-transcription-factor	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	2.77993e-88
NZ_CP052854.1\|WP_027700130.1\|2460270_2462367_-\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP052854.1\|WP_031345908.1\|2458675_2460202_-\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	5.73996e-172
NZ_CP052854.1\|WP_004084656.1\|2457162_2457915_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	6.62747e-130
NZ_CP052854.1\|WP_004084646.1\|2443976_2444684_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.44774e-44
NZ_CP052854.1\|WP_004084652.1\|2449259_2450060_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	1.14288e-162
NZ_CP052854.1\|WP_004084644.1\|2440965_2442021_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP052854.1\|WP_004084653.1\|2451127_2452888_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NZ_CP052854.1\|WP_020851257.1\|2444664_2445930_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP052854.1\|WP_004084645.1\|2442017_2443073_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	0

>NZ_CP052854.1|WP_004084652.1|2449259_2450060_-|30S-ribosomal-protein-S2
MPQVTMRQMLEAGVHFGHQTRYRHPKMSPNIFGARGKIHIINLEKTVPLFNDAMNFLSAVAQKRGSVLFVGTKRSARDAIKEEAERCGMPYMIQRWLGGTLTNFRTVKQSVARLKELELAETDGTFSKLVKHEVLRLRRESGKLQASLGGIKDMNRIPDAIFVIDIGHEDIAIKEAKKLGIPVVAVVDTNYDPSLVDYPIPGNDDAIRAVQLYARAAADAVLEGKAAMPNAVAVREEEFASAPDAGKKGRQAQPKKGKRASDAAAE
>NZ_CP052854.1|WP_004084651.1|2448192_2449071_-|elongation-factor-Ts
MEITASLVKELRERTGVGMMECKKALSENAGNIDAAVEWLRKSGLVKADKKAGRIAAEGRIVVVHDGGKAVLVEINSETDFVAKDSHFLAFAEAVAQAALVAGAVDVEALKSVKLPSGETVEEARAAVIAKIGENVRVRRLARIDSANNVAAYVHGGRIGVLVEVKGGDVELARGIAMHVAAMNPPYNKVADVSAEFLEKEKEIELSKMSEKDKSKPADILEKIISGKINKIVKEVTLYGQPYVLNPDQSVEQVVKAAGADVIGFQRMEVGEGIEKIVEDYASEVMKQAGLS
>NZ_CP052854.1|WP_004084650.1|2447353_2447932_+|response-regulator-transcription-factor
MNHSAAKIGLLVDDDTLYLRTLQRSLGRRGVDTVTATDAVSALTAARSALPSFALLDLKLGQDSGLALIQELRAIRSDMRILLVTGYASIATAVEAIKRGADEYLPKPANINTILRAISEETANGLTPDKDESALHTMTPLSRLQWEHIQQALHETDGNISAAARLLGMHRRSLQRKLTKRPSPGTLHDSDH
>NZ_CP052854.1|WP_169710203.1|2446139_2447357_+|HAMP-domain-containing-histidine-kinase
MHTSAASFLRTLCTLRWVATAGQVVTILMATHAMGLALPQGPLWAGVCTLALFNLYAQRRISHTHVTSPNIEFGHILVDVAVLTWMVGWSGGISNPFGSLFLVLIALAALALPLRWAMAVAATCVSGYLVSAAFGLPLPHNHFNPLTLHMWGMAANFLLSTVMVLVFTTWLAQALHAREREISLLRERFTRNEGIIALATHAASVAHELNTPLATMTLLADDVAEQCQQLELCEDLETLRELLTQCRNRVLTLAAPADKLNVDIQVHNVLDQWQLMHPTIHLKHNEDAPLQLMLEPGVGHLIMVLLNNAADAGERSNRRQVDLNLHIQDGQLYGEVRDYGSGFETPQGLLPGMLFHTQKANSMGVGLALSHATVERLQGDIWMQPAKGRGTRVSFRVPLKETSTA
>NZ_CP052854.1|WP_020851257.1|2444664_2445930_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MHDIVTPQVASDSAVPWSRRRTQAVNIGHVTVGGGHPVVVQSMTNTDTADVVASTKQVAELWRAGSEMVRLTVNNAQSAAAIPRIAERLAMMGIEVPLIGDFHYNGHQLLADEPACAEVLAKYRINPGNVGFGKKRDLQFGQLIECAIRYGKPIRIGANWGSLDQMLAAQLMDENNRRKQPWDAAQVLREVLICSAVGSAERAVELGLPRDRIVLSAKVSGVQELIAVYRDMAARCDFALHLGLTEAGIGSKGIVASSAALAVLLQEGIGDTIRISLTPEPGQSRTQEVIVAQELLQTTGHRAFTPMVTACPGCGRTTSEFFQELAKTVQQHVRDKMQVWKITHPGAETMTLAVMGCVVNGPGESRHANIGISLPGTGEMPVAPVFIDGEKSVTLRGGNIAQDFITLVDDYVERRYARFPD
>NZ_CP052854.1|WP_004084646.1|2443976_2444684_-|phosphatase-PAP2-family-protein
MPVSPTDAFVGFCRWRRAHVRHHQLLCLGVLLPLGLCVVLAVGVYQRQSFCFDLPLLYWIRTLASPNLDAFFVVLTQQGYWYGLVGIDVLIVLILLGQRRWYVAGFAGCSLVGAKLLNIAAKHLFQRERPMLWETIAPAHGFSFPSAHAMDAMAMLTVLLVLLRGVRWRGLLMMVPGTFVLLLSASRLYLGVHYPSDILGGWSAALVWVIGLYLLMFRDADRLLALRSRTDPECD
>NZ_CP052854.1|WP_004084647.1|2443066_2444002_+|DMT-family-transporter
MVTQGQLPLRAAMLMLFSTLSFGMMAITIRYASTQIPTTEIAFFRNAFGLLVLLPLILGPGKPLPRTQHGPRYIARSMLGLISMLCNFWAISHLPLTQAITLSYSTPLFATILASLWLHEVVRLRRLLAILAGFAGILVLLQPWSSTFSPALLVALAAALLNAVITIQMKQLSHLDPPDTVVFYTYAFWVPLSLLLALWQWHWPAGVEWVWLIATGIFGTIGQLLWIRALRLGEVSTLQPIGFMQLPLVTLLGWWLFGEHLDRYTALGASIIIGANVYITHREAVLARRTAAETIQKGVQSNGINRTQGPS
>NZ_CP052854.1|WP_004084645.1|2442017_2443073_+|UDP-N-acetylmuramate-dehydrogenase
MSRQINTPDWILHANAPLRELNTFHIQAQARWLLEIIHPTALPQALTHPHIVGLPILVLGSGSNVLFAADPEECVLRFVNREVTILEHRIDHTLVRAGAGMAWHDLVLWSLQQGLSGLENLALIPGTVGACSIQNIGAYGVQVEEFVHIVEAYDQTEGKFVRLTASECEFAYRNSRFKREPNRYLITAVEFRLPLLHELNLNYAGISEELEALQITLPEPCDVAQAVINLRRRKLPDPEVLSNAGSFFKNPHLPREQAEQLRQHHPTLPIYPGETPESNKLSAAWLIEQCGWKGIREGDAGVAPQHSLVLVNYGEATGAELLALARRIAASVQERFGVAIEPETRLIGAQW
>NZ_CP052854.1|WP_004084644.1|2440965_2442021_+|quinone-dependent-dihydroorotate-dehydrogenase
MYSLFRPLLFTCDTERAHDISLRTLDIAYHSGALPLLTRHTRPLPTTAFGLNFPNPVGLAAGLDKNGTHIDALFALGFGFIEIGTTTPRPQAGNPKPRLFRLTQQQAVINRMGFNNLGVDALVRNVAGARRRNGPLGINIGKNKDTPNEQASNDYRYCLERVYALADYVTINLSSPNTAGLRALQEEQTLRRLIGELRETQETLAAKHGRHVPMLIKMAPDLSDSDIDAAARVLNEMSVDGVIATNTTVTRPLLRQHPLASEAGGLSGAPLLGQSTLVLRRLRTHLPETIDLIGVGGICCGADAGAKMAAGASLVQCYTGLIFKGPQLVGECVEAIRRRLEASSSGRENTQ
>NZ_CP052854.1|WP_004084643.1|2440370_2440679_+|DUF4190-domain-containing-protein
MDVIQQGTNGQQRTNVLAIASLVTSILGISFLPFIGSLCGIITGHMARAEIRRQPDTLKGDELAIVGLILGWLVVIPTVVFLMMFLLFFGGLGWFIHLTPAR
>NZ_CP052854.1|WP_004084653.1|2451127_2452888_+|ABC-transporter-ATP-binding-protein/permease
MPAPHIPNRLQRLNHLRILWPFMRRHLALFSGWLIALAVSSAATLTLPSAFKQMIDHGFSSEGQINRTFALLLLVAVILAVGTAARLFSVSLLGEKIITDLRSQLYAHLIGLDASFHDRNRSNELVSRLATDSELLRSIIGSTMSVATRSTVTAIGSLIMLFITSPRLASLSLVVIPLVILPIVLGAQQLQKAARTSQDRIADTNSFAAETLRALRTVQAYAREHYERTRFDRTLETSLQAARQRIHIQTWVTAASIVLIFSAIVGVLWAGAHDVIAGRMSAGTLGEFVLYALIGGGSIGALAEVWNELQRAAGGMGRIFELLKEKNTLTVPATPALPPHPLRGEIRFERVGFHYPQRPETPALDDIDLHIRPGETIAFVGPSGAGKSTLISLLLRFYDPTHGRILIDGVDLRQTDPKVLRTHIALVQQQPTLFTASAMENIRYGRLDATTAEIEIAARSSEADGFIRALPQGYATELGEHGLSLSGGQQQRIAIARALLKEAPILLLDEATNALDAQNEQAVQQALERLMTGRTTLIIAHRLVTILKADRIVVMDQGRIVAQGTHSELIAAGGLYAKLARLQFIE
>NZ_CP052854.1|WP_004084654.1|2454488_2455145_+|protein-L-isoaspartate-O-methyltransferase
MTIDFSIAREKMVEQQIRPWDVVDLHVLDVLAHIPREAFVPEPYRTLAYADLEIPLPGGQTMMKPVIEGRLLQALMLSPEEDVLEIGTGSGFLTACLASLGHEVVSLEINSALAASARTHLDTIGLGSNVHIEQADAFTWQPERQFSVICLTGAVSTLPLQFLQWLHPNGRMFAIHGHSPAMQAVLVRGDASTPNITSLFETDLAYLKGGEPALQFHF
>NZ_CP052854.1|WP_004084655.1|2455167_2456526_+|TolC-family-outer-membrane-protein
MIRRCLALAVTTALFPVVSQATNLLQVYEMARAADPQLSAAESTRLYSVEGQVQARAALLPQMSGAATLARSRTEYDGISGSAISKNRQYSINGSQTLFNWNQFSNLRSQRAIAKAADFTLESAKQNLIVRSSAAYFSVLIGIESLIAAEANEASAKRQFDYAQKRLEVGLSPITDLHEARASYDQARADTITARNTLQDYYQALAEITGQPVTDLRGLPEDFRPEVPAKFSNIDQLVTEAISNNPSLKAQQLQVNAAESSISAARGEHYPTLSLSGSLGKSKAWGSSSGAMSALIPDRDQPISDTNNLQLTLSIPLFAGGATQSRVRQAIAQRDIQQDNYEQNKRTLNRNTRNAYQNMIAGISEVEARRLAVVSAQAALDASQVGLEVGTRTLLDVVQNQRILFSVRQAYVQARYNFLQNRLLLSQNSGTLSIEDVQEINQLLTADSERKL
>NZ_CP052854.1|WP_004084656.1|2457162_2457915_-|UDP-2,3-diacylglucosamine-diphosphatase
MTTLIISDLHLDPLRPVVTELFLRFLREQVSGADALYILGDLFEVWIGDDMPSEVADMVAAALRTYADAGTPLYFMPGNRDFLVGADYAARAGFRILPDPCVVDLYGEPTLLLHGDLLCTDDIAYQAFRAQTRDPEFIAQFLTQTLSARLAFAQQARLASHAHQSGLKQENDSTQFEKITDVVPADVAAMFACYGVNRMIHGHTHRPALHMLQVAECACTRVVLGDWYQQGSVLCVDADGLVLEQLLLPG
>NZ_CP052854.1|WP_076613195.1|2458036_2458267_+|hypothetical-protein
MTGSGNDYHIILGKHAANPRHTKKINGMGSLYIFQLAPLFKAGNTPERICIVRKIEHHHAPTTRINTPAPLAFVVT
>NZ_CP052854.1|WP_031345908.1|2458675_2460202_-|exopolyphosphatase
MPNTLPSYPPLKDGDLLAAIDLGSNSFHMVVARYLLGQLHVVDRLREAVRIADGLDAKGGLSSKACERALECLARFGQRLRNMPSPHVRALATNTVRRLRSPQAFLVLAETALGHSIEVVSGREEARLIYLGVAHAQPPRLDQHRLVIDIGGGSTEFIIGKGFEPLERESLQVGCIASTRRFFPEGKLSKKRWNDALTEIGTEFQQFAAQYNVLGWQEALGSSGTHKTIAKICTEMKLAKGEITAEALPVLREELLKAKRIEDIHLPGLSAHRRPIIAGGILVLEAVFQTLGLEKLLVSKAAMREGILYDMLGRAGDNDPRDTSVAVLMHRYAIDEQQALRVETTAQLLFQQACGPWALDADDARVLCWAARLHELGLVIAHSHYHVHGSYVLEHSDIAGFSRQEQQVLAVLVCTHRRHVSKNAFDVLPDRLRVSVRRRAALLRLAALLHRAREPDWVPTLNLHVDGDVLMLTVPKGCLASRPLLHSDLNAEVEAMVDLGIVFKLSVV
>NZ_CP052854.1|WP_027700130.1|2460270_2462367_-|polyphosphate-kinase-1
MSKSSPIEPVSASDVSQQFRDPGLYLNRELSQLDFNFRVLAQALDEQVPLLERLRFLCISCTNLDEFFEIRVATVRHAQEFGLPPAPDGMRPTVILNAVHDLTTKLVHDQYNCWNQVLCPALAALGVGVLSHNSWNVRQKRWLRGYFRNEIMPVLSPLGLDPAHPFPKIFNKTLNIVVVLNGIDAFGRAGHLAIVRAPRSLPRIIELPQHLSRDGSQNFVFLSSVLSAFVGELFPGMVVKGAYQFRVTRNSELVVDEDEVENLALALRNELVTRGYRLAVRLEIAEDCPIPIVRTLLQNFGLQENAVYRINGPVNLSRVSQVYDMVLRPELKYPPFNPRTVRNSDHIFEIIAKGDVLLYHPYDAFTAVLDLLRQAAADPDVLAIKQTLYRTGKDSTIVDALIQAARSGKDVTVVVELRARFDEEANLGLADKLQEAGVQVVYGVVGYKTHAKMLLIVRREGRKLRRYVHLGTGNYHSGTARIYTDLSLMTANAAIGKDVHQLFLQLSGLAPKMKLECLLQSPFTLHAGVLFRIERETTFARKGRPARIVAKMNALNEPQVVRALYVASQAGVQIDLIVRGACTLRPGVQGISENIRVRSIVGRFLEHSRVYWFANNGTPELFCASADWLERNLLRRVEICFPILNPDLAKRIYSDVLQSYLDDNLNAWELGSDGVYRKLLPETDHAPYSAQAALLESL
>NZ_CP052854.1|WP_004084659.1|2462478_2463819_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MSIVSTLHRIRFAWFKTLGVLALILFAALLVGLLIGQVWIVLTLTALAEIAWQYWTLHQVLHQLAMRRRWTRSMDIGVWKQLDHLICRNQTDMRARVHRLLEMLRTYRAAAAALPDAVVVVDCNSQCIQWFNEAANTLLGLRYPSDLDRPVVERLQPLPLASWLTQGCNAESMLDVPSPVNPDVRLNLHLIPYFDDYLLLIARDVSKLLLLEQVKRDFVANVSHELRTPLTVVHGYLDMLDPDDFPDAAPMLDEMRKQSQRMTQLVEDLLTLSRLESQEELEQEQVAMVPMLATLHREAEAHSQGRHTIEVVDNAGCDLFGSNKDLHSAFSNLITNAVRYTPAGGSVRVCFQREDDGVVLMVCDTGYGIPTSHLPRITERFYRVSSSRSRERGGTGLGLSIVKHVLELHQARLDIISEVGKGSEFSCHFAAARVAMRESESVPIPP
>NZ_CP052854.1|WP_004084660.1|2463836_2464532_-|phosphate-regulon-transcriptional-regulator-PhoB
MQKRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRTRDDEEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHVWGSGVYIEERTIDVHIRRLRRTLEPFGLDDMVQTVRSAGYRFSGAIQI
>NZ_CP052854.1|WP_038211082.1|2464614_2466243_-|M48-family-metallopeptidase
MRRLSLAIATALVLPLGGIGLNAQESRLPDIGSSAGQLLTPARQAEYGKLMMAELRNYGYVLEDPLLQGWLQSIGEHLAANSDQPHQLFTFVLLKERQINAFATLGGYVAVNSGLLLTAEREDEVAAVLSHEIMHINQKHVLRSVERAQRDQIPILLGMLAAVIAAQHVGGNSSGDATMAGITSAMGLMQQRQINYTRSNEAEADRLGIHTLARSGYDLEAMAGFFERMSLVTRGNSGGDQAPDYLQTHPVTVTRISEAKARAEQLKKQKGLTGGEVDLMSRERLNLHHVFPGVPANPLLPKVLQPAYSELSRGPSGQFGWAKERLRVLSAKSPESALREYEALRRNTKGGLNDFQRYGMALAKFRNGSNLDEVMHEFRTLLEVHPDNVWLASALAQTQARAGQRHEAGERFDALLRRLSGQRAVVLMYAEMLNEGGNLQDGKRAQALLLPLLRQLSEDALFQQTFARSCELAGATARASEAYAEAAFLNGRPEQALIQLQALKKENLDYVTRARVDARIAAITPAVLEMRRQGIRDPDLDR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

168222 : 288520

109

Xylella_phage(31.58%)

holin,terminase,tail,tRNA,protease,integrase,plate,portal,capsid

attL 171722:171739|attR 263364:263381

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004085497.1\|168222_169479_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
171722:171739	attL	NA	NA	NA	NA
WP_004085054.1\|175310_176126_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	F8WPX6	Bacillus_phage	2.6e-20	28.2
WP_004085053.1\|176260_177058_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_004085052.1\|177555_179469_+	DUF885 family protein	NA	NA	NA	NA
WP_004085051.1\|179868_180609_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_004085050.1\|181155_182760_+	peptide chain release factor 3	NA	NA	NA	NA
WP_004085049.1\|182842_183487_+	hemolysin III family protein	NA	NA	NA	NA
WP_004085048.1\|183711_184725_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	1.9e-73	44.0
WP_012337571.1\|185013_185796_-	TatD family hydrolase	NA	NA	NA	NA
WP_004085046.1\|186144_186918_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_021358332.1\|187745_188174_-	hypothetical protein	NA	NA	NA	NA
WP_004085045.1\|189539_189935_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_004085044.1\|190465_191572_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_021358331.1\|191723_192155_-	NfeD family protein	NA	NA	NA	NA
WP_004085042.1\|192158_193115_-	SPFH/Band 7/PHB domain protein	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	8.2e-18	28.5
WP_004085041.1\|193449_194283_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_021358329.1\|194316_195117_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_004085039.1\|195113_195662_-	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_004085038.1\|195703_197161_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.5e-07	21.8
WP_169709882.1\|197151_197886_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_004085036.1\|199480_200821_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.4e-52	35.0
WP_004085035.1\|200901_201258_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_004085034.1\|202356_202881_-	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_004085033.1\|203405_204035_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_004085032.1\|204646_205354_-	DUF502 domain-containing protein	A0A2I7S9X1	Vibrio_phage	6.3e-07	27.2
WP_169709883.1\|205499_206519_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	3.6e-189	97.3
WP_169709884.1\|206518_206767_-	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.0e-33	84.1
WP_169709885.1\|206759_206924_-	hypothetical protein	C8CLF6	Xylella_phage	7.4e-20	94.4
WP_169710133.1\|206920_208339_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	3.8e-269	96.8
WP_169709887.1\|208423_208849_+	hypothetical protein	NA	NA	NA	NA
WP_004086077.1\|208850_209129_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	5.6e-44	95.6
WP_169709888.1\|209125_211306_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	93.9
WP_169710109.1\|211307_212459_-	hypothetical protein	C8CLG1	Xylella_phage	1.4e-194	89.4
WP_169710134.1\|212545_213112_-	DUF2815 family protein	C8CLG2	Xylella_phage	3.9e-100	95.2
WP_012337864.1\|213111_214389_-	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	5.0e-228	93.4
WP_021358684.1\|214385_214817_-	hypothetical protein	C8CLG4	Xylella_phage	3.1e-49	97.2
WP_169709890.1\|214859_215090_-	hypothetical protein	C8CLG5	Xylella_phage	6.7e-19	79.7
WP_169709891.1\|215121_215313_-	hypothetical protein	C8CLG6	Xylella_phage	1.2e-16	75.0
WP_004086365.1\|215336_215528_-	hypothetical protein	NA	NA	NA	NA
WP_169709892.1\|215524_215926_-	hypothetical protein	C8CLG7	Xylella_phage	6.6e-62	88.0
WP_169710135.1\|215922_216393_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_169710110.1\|216389_216833_-	hypothetical protein	NA	NA	NA	NA
WP_169709894.1\|216937_217498_-	hypothetical protein	C8CLG9	Xylella_phage	6.9e-09	35.7
WP_169709895.1\|217678_218434_-	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	3.3e-30	30.8
WP_024748600.1\|218516_218753_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_169709896.1\|218742_219072_+	hypothetical protein	NA	NA	NA	NA
WP_012337854.1\|219159_219543_+	hypothetical protein	C8CLH2	Xylella_phage	3.6e-57	89.7
WP_169709897.1\|219802_220411_+	hypothetical protein	C8CLH5	Xylella_phage	4.5e-46	55.4
WP_169709898.1\|220548_223080_+	DNA primase	C8CLH6	Xylella_phage	0.0e+00	73.7
WP_169709899.1\|223431_224049_+	hypothetical protein	V5YTF6	Pseudomonas_phage	4.0e-26	52.2
WP_169709900.1\|224015_224510_+	lysozyme	A0A2H5BQB7	Pseudomonas_phage	2.5e-26	56.0
WP_004086884.1\|224502_224832_+\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	5.7e-19	41.7
WP_169710136.1\|224821_225283_+	hypothetical protein	NA	NA	NA	NA
WP_169709902.1\|225284_225509_+	hypothetical protein	NA	NA	NA	NA
WP_169709903.1\|225639_226215_+\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	2.1e-45	57.4
WP_169710137.1\|226207_228160_+\|terminase	phage terminase large subunit family protein	D5LH04	Escherichia_phage	2.4e-250	67.2
WP_169709905.1\|228163_228715_+	hypothetical protein	V5YTG8	Pseudomonas_phage	7.5e-40	51.2
WP_169710138.1\|228711_230298_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	8.3e-132	51.3
WP_169709907.1\|230294_232169_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	1.9e-164	48.7
WP_012337650.1\|232186_232447_+	hypothetical protein	NA	NA	NA	NA
WP_169709908.1\|232446_232770_+	hypothetical protein	NA	NA	NA	NA
WP_169709909.1\|232766_233294_+	hypothetical protein	D5LGZ7	Escherichia_phage	3.7e-12	36.2
WP_154436958.1\|233269_233812_+	hypothetical protein	A0A1W6JT55	Escherichia_phage	8.1e-39	43.2
WP_042836490.1\|233808_234396_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_004085172.1\|234400_234676_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_004085174.1\|234686_234968_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.6e-14	45.2
WP_004088650.1\|235165_235504_+	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	2.4e-33	61.3
WP_038284057.1\|235503_236397_+\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	8.6e-70	46.4
WP_169709910.1\|236389_236947_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.1e-51	53.9
WP_169709911.1\|236954_238547_+\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	2.0e-85	36.6
WP_038230457.1\|238611_239790_+\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	4.5e-135	55.4
WP_004086986.1\|239789_240299_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	5.3e-48	52.7
WP_169709912.1\|240301_240589_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	4.0e-13	43.4
WP_169710111.1\|240715_242935_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	7.8e-96	44.9
WP_169709913.1\|242931_243414_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	2.6e-28	46.8
WP_040123123.1\|243410_243629_+\|tail	tail protein	A0A1W6JT40	Escherichia_phage	2.0e-12	48.6
WP_169709914.1\|243619_244702_+	phage late control D family protein	A0A088FRU7	Escherichia_phage	5.7e-92	45.6
WP_169709915.1\|245120_246050_+\|protease	serine protease	NA	NA	NA	NA
WP_143704329.1\|246259_246481_+	hypothetical protein	NA	NA	NA	NA
WP_004086316.1\|246807_247407_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004086315.1\|247471_247924_+	CopD family protein	NA	NA	NA	NA
WP_012337572.1\|248089_249049_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_128723644.1\|249143_252725_-	DNA polymerase III subunit alpha	A0A291AVA6	Streptomyces_phage	5.3e-187	36.4
WP_012337574.1\|253013_253940_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	7.4e-48	33.7
WP_004086308.1\|254477_254807_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_004086307.1\|254851_255523_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_027700348.1\|256425_257901_+	anthranilate synthase component I	S4VNU7	Pandoravirus	3.5e-36	29.8
WP_012337576.1\|258054_258639_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.9e-66	59.7
WP_004086298.1\|258707_259742_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.7e-74	42.9
WP_012337577.1\|259826_260621_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	6.7e-66	54.6
WP_004086296.1\|260617_261340_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_004086295.1\|262324_262831_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004086294.1\|264565_265768_+	aminopeptidase P family protein	NA	NA	NA	NA
263364:263381	attR	NA	NA	NA	NA
WP_004086293.1\|265955_267782_+	DUF885 family protein	NA	NA	NA	NA
WP_004086289.1\|270087_271242_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.1e-84	45.8
WP_027700344.1\|271364_271715_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_004086285.1\|271781_273626_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_004086283.1\|273645_274611_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	9.4e-30	31.8
WP_004086282.1\|274946_276212_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	2.7e-24	36.7
WP_012337581.1\|276211_276730_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004086274.1\|276762_277581_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	2.2e-35	34.9
WP_004086273.1\|277577_278423_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_004086272.1\|278505_278886_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_004086271.1\|278889_280398_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_021358323.1\|282151_282751_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_004086267.1\|282747_284259_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_004086265.1\|284354_287033_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	7.6e-21	21.9
WP_004086263.1\|287143_287521_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_004086261.1\|287617_288520_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA

DBSCAN-SWA_2

424579 : 549377

106

Escherichia_phage(22.5%)

holin,terminase,tail,tRNA,protease,integrase,plate,portal,capsid

attL 469662:469682|attR 559761:559781

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011097581.1\|424579_425077_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYZ2	Pandoravirus	3.7e-06	36.0
WP_049756302.1\|425084_425567_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_012337622.1\|425766_427143_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_004085229.1\|427673_428438_-	arginyltransferase	NA	NA	NA	NA
WP_004085228.1\|428861_429353_-	hypothetical protein	NA	NA	NA	NA
WP_049756303.1\|429356_430208_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_004085334.1\|431122_431452_-	hypothetical protein	NA	NA	NA	NA
WP_169709920.1\|432577_435454_+	S8 family serine peptidase	NA	NA	NA	NA
WP_004085225.1\|436753_438736_-	CocE/NonD family hydrolase	NA	NA	NA	NA
WP_004085224.1\|439390_441982_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_004085223.1\|443882_446909_+	TonB-dependent receptor	NA	NA	NA	NA
WP_004085222.1\|447014_448457_-	adenosylhomocysteinase	S4W1G4	Pandoravirus	2.0e-47	31.1
WP_021358468.1\|449606_450914_+	acyl-CoA synthetase	NA	NA	NA	NA
WP_004085220.1\|451784_452489_-	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	1.0e-25	38.3
WP_004085219.1\|452545_453703_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_011097591.1\|453779_454571_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_004085217.1\|454592_455075_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_004085216.1\|455071_456088_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_012337629.1\|456275_458630_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_004085214.1\|458728_460063_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_169710112.1\|460089_461280_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_004085212.1\|461276_462131_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_004085211.1\|462127_462895_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.6e-16	34.8
WP_004089320.1\|462897_463455_-	ribosome recycling factor	NA	NA	NA	NA
WP_004085207.1\|465828_466509_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_004085206.1\|466620_466941_+	DUF1820 family protein	NA	NA	NA	NA
WP_004085205.1\|468151_468883_-	UMP kinase	NA	NA	NA	NA
WP_004085344.1\|469327_469576_+	hypothetical protein	NA	NA	NA	NA
469662:469682	attL	NA	NA	NA	NA
WP_004085204.1\|470276_470936_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_004085203.1\|471032_472949_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_004085202.1\|473047_473767_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_004085201.1\|473763_474777_-	glucokinase	NA	NA	NA	NA
WP_021358465.1\|474773_476207_-	glucose-6-phosphate dehydrogenase	A0A222YYZ2	Synechococcus_phage	5.8e-68	34.2
WP_012337631.1\|476535_477630_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.1e-25	32.0
WP_004085198.1\|477774_478578_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_004085343.1\|478890_479109_+	DUF1674 domain-containing protein	NA	NA	NA	NA
WP_021358463.1\|479166_479589_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_004085197.1\|479585_479969_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_004085196.1\|479976_481767_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_004085195.1\|481787_482573_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_004085194.1\|482693_482942_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_012337633.1\|482964_483345_+	hypothetical protein	NA	NA	NA	NA
WP_004085192.1\|483370_484612_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_004085191.1\|484604_485327_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.6e-34	37.2
WP_012337634.1\|485674_488152_+	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.4e-05	34.3
WP_004085189.1\|488136_488799_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_004089267.1\|488803_489241_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_004085187.1\|489258_491007_+	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	5.7e-49	28.8
WP_004085186.1\|491003_492023_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_012337635.1\|492397_493480_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	5.7e-92	45.6
WP_004085341.1\|493470_493689_-\|tail	tail protein	A0A1W6JT40	Escherichia_phage	3.1e-13	50.0
WP_012337636.1\|493685_494168_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	8.9e-29	47.6
WP_012337637.1\|494164_496384_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	6.0e-104	47.1
WP_012337638.1\|496510_496798_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.4e-13	44.6
WP_128283754.1\|496800_497310_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	1.4e-48	53.9
WP_004086970.1\|500148_500706_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	6.6e-52	54.4
WP_004085176.1\|501589_501928_-	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	9.3e-33	60.4
WP_004087029.1\|502061_502376_+	type II toxin-antitoxin system RelE/ParE family toxin	O64357	Escherichia_phage	1.6e-07	30.4
WP_004087027.1\|502377_502659_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_004087025.1\|502670_502970_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.2e-15	49.4
WP_128283746.1\|502974_503562_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_154436958.1\|503558_504101_-	hypothetical protein	A0A1W6JT55	Escherichia_phage	8.1e-39	43.2
WP_169710140.1\|504076_504598_-	hypothetical protein	D5LGZ7	Escherichia_phage	5.6e-13	35.0
WP_169709908.1\|504594_504918_-	hypothetical protein	NA	NA	NA	NA
WP_012337650.1\|504917_505178_-	hypothetical protein	NA	NA	NA	NA
WP_169710141.1\|505195_507070_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	4.8e-163	48.4
WP_169710142.1\|507066_508653_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	4.1e-131	51.3
WP_038230179.1\|508649_509201_-	hypothetical protein	V5YTG8	Pseudomonas_phage	2.6e-40	51.7
WP_169710143.1\|509204_511157_-\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	4.1e-250	66.8
WP_004086888.1\|511149_511725_-\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	4.3e-46	58.6
WP_012337656.1\|511855_512080_-	hypothetical protein	NA	NA	NA	NA
WP_169709972.1\|512081_512543_-	hypothetical protein	NA	NA	NA	NA
WP_004085022.1\|512532_512862_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_128382956.1\|512854_513355_-	lysozyme	A0A1B1UZH2	Plesiomonas_phage	7.3e-26	51.1
WP_169709925.1\|513454_514186_-	site-specific DNA-methyltransferase	A0A2P1CGF5	Mycobacterium_phage	8.4e-63	53.0
WP_004085025.1\|514375_514711_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_004089517.1\|514707_514962_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_012337661.1\|515014_515737_-	hypothetical protein	C8CLH7	Xylella_phage	3.0e-105	82.1
WP_162010044.1\|515679_516027_-	hypothetical protein	NA	NA	NA	NA
WP_021358690.1\|516080_516239_+	hypothetical protein	NA	NA	NA	NA
WP_038230497.1\|517479_517758_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	7.3e-44	95.6
WP_004085029.1\|517759_518164_-	hypothetical protein	NA	NA	NA	NA
WP_169709926.1\|518248_519667_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	7.1e-268	96.4
WP_004086189.1\|519663_519828_+	hypothetical protein	C8CLF6	Xylella_phage	6.7e-21	96.3
WP_004086191.1\|519820_520069_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	2.2e-36	89.0
WP_169709927.1\|520068_521088_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.4e-172	90.6
WP_004085684.1\|521864_522506_+	ParA family protein	A0A142F1W4	Mycobacterium_phage	3.4e-12	40.7
WP_004085683.1\|522533_523010_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_004085682.1\|523014_523587_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_038231298.1\|523583_525542_+	phospholipase D family protein	NA	NA	NA	NA
WP_071869548.1\|526527_526920_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004085680.1\|528182_528668_-	asparaginase	NA	NA	NA	NA
WP_004085679.1\|528910_529510_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_004085726.1\|529911_530055_+	hypothetical protein	NA	NA	NA	NA
WP_004085678.1\|530084_531269_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.4e-51	34.3
WP_004085677.1\|531457_532033_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_027700073.1\|533386_533680_-	DUF2782 domain-containing protein	NA	NA	NA	NA
WP_169709928.1\|533764_536536_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	1.3e-63	29.7
WP_012337670.1\|537192_537906_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_031345756.1\|538103_539228_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	A0A0P0IKJ1	Acinetobacter_phage	1.8e-08	25.1
WP_004085673.1\|539426_542669_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_027700071.1\|542677_543142_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_004085671.1\|543149_544070_+	hypothetical protein	NA	NA	NA	NA
WP_161632202.1\|544072_545881_+	single-stranded-DNA-specific exonuclease RecJ	NA	NA	NA	NA
WP_169709929.1\|546548_547673_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	3.4e-07	43.1
WP_004085668.1\|547856_549377_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	5.0e-86	40.1
559761:559781	attR	NA	NA	NA	NA

DBSCAN-SWA_3

882634 : 973932

Xylella_phage(30.43%)

holin,terminase,tail,tRNA,protease,integrase,plate,portal

attL 932659:932675|attR 974035:974051

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169710144.1\|882634_883774_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004083752.1\|883770_884229_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004083751.1\|884408_884729_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.2e-11	42.0
WP_004083750.1\|884861_887138_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.2e-168	44.7
WP_004083749.1\|887480_887699_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_004083748.1\|887815_888550_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_012337768.1\|888561_889698_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004083746.1\|890126_891092_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	4.5e-64	43.0
WP_004083745.1\|891360_893715_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	1.4e-82	45.1
WP_004083744.1\|893899_895810_+	DUF3857 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_049756311.1\|896372_896999_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004083742.1\|897130_898498_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.7e-70	36.9
WP_004083741.1\|898658_899060_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_128283905.1\|899735_901232_+	response regulator	A0A2K9L0Z8	Tupanvirus	2.1e-07	36.1
WP_031345731.1\|901357_901873_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004083738.1\|901883_902621_-	pteridine reductase	NA	NA	NA	NA
WP_004083737.1\|902701_903886_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004083736.1\|903873_904290_+	hypothetical protein	NA	NA	NA	NA
WP_004083735.1\|904309_905314_-	glucokinase	NA	NA	NA	NA
WP_021358212.1\|905740_905926_+	hypothetical protein	NA	NA	NA	NA
WP_004083734.1\|906017_907307_+	glucose/galactose MFS transporter	NA	NA	NA	NA
WP_004083733.1\|907310_908387_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004083732.1\|908383_909424_+	SIS domain-containing protein	NA	NA	NA	NA
WP_004083731.1\|909423_910581_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_169709968.1\|911257_912154_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_020852600.1\|912150_913497_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_004083728.1\|913580_914435_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_004083727.1\|914431_915577_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_004083726.1\|916091_916421_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_012337770.1\|916524_917775_-	cysteine desulfurase	Q2XUY6	environmental_halophage	8.6e-84	37.9
WP_004083725.1\|917762_919031_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_027699983.1\|919030_919867_-	Fe-S cluster assembly ATPase SufC	W5SAS9	Pithovirus	1.9e-10	28.6
WP_012337772.1\|920013_921471_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_004084097.1\|921491_921953_-	SUF system Fe-S cluster assembly regulator	NA	NA	NA	NA
WP_004083722.1\|922116_922584_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_004083721.1\|923380_925534_+	S9 family peptidase	F2Y2Z7	Organic_Lake_phycodnavirus	3.7e-26	37.1
WP_004083720.1\|925636_925849_+	lipoprotein	NA	NA	NA	NA
WP_004083719.1\|925858_926713_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_004083718.1\|926709_927381_+	DUF484 family protein	NA	NA	NA	NA
WP_021358210.1\|927404_928289_+	tyrosine recombinase XerC	A0A0K0N6I5	Gordonia_phage	7.1e-16	33.8
WP_004083716.1\|928873_929425_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_012337775.1\|929492_930872_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	1.7e-40	30.2
WP_012337776.1\|931092_932448_-	DUF2252 domain-containing protein	NA	NA	NA	NA
932659:932675	attL	NA	NA	NA	NA
WP_128283903.1\|933063_934071_-	peptidase	NA	NA	NA	NA
WP_169710145.1\|934350_935433_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	7.4e-92	45.6
WP_169710146.1\|935423_935642_-\|tail	phage tail protein	A0A1W6JT40	Escherichia_phage	3.1e-13	50.0
WP_169710147.1\|935638_936121_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	3.4e-28	46.8
WP_169710210.1\|936117_938331_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	3.6e-101	46.0
WP_128283755.1\|938457_938745_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.4e-13	44.6
WP_012337639.1\|938747_939257_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	5.3e-48	53.3
WP_169710148.1\|939256_940435_-\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	1.7e-134	55.2
WP_154128230.1\|940499_942092_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	4.6e-82	35.9
WP_004086970.1\|942099_942657_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	6.6e-52	54.4
WP_004085178.1\|942649_943543_-\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	8.6e-70	46.4
WP_004088650.1\|943542_943881_-	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	2.4e-33	61.3
WP_004086967.1\|944030_944294_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_004086966.1\|944280_944562_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_128283746.1\|944598_945186_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_154436958.1\|945182_945725_-	hypothetical protein	A0A1W6JT55	Escherichia_phage	8.1e-39	43.2
WP_154436960.1\|945700_946222_-	hypothetical protein	D5LGZ7	Escherichia_phage	1.3e-12	34.5
WP_154436962.1\|946218_946542_-	hypothetical protein	NA	NA	NA	NA
WP_012337650.1\|946541_946802_-	hypothetical protein	NA	NA	NA	NA
WP_169710142.1\|948689_950276_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	4.1e-131	51.3
WP_038230179.1\|950272_950824_-	hypothetical protein	V5YTG8	Pseudomonas_phage	2.6e-40	51.7
WP_169710143.1\|950827_952780_-\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	4.1e-250	66.8
WP_012337655.1\|952772_953348_-\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	9.5e-46	58.0
WP_012337656.1\|953478_953703_-	hypothetical protein	NA	NA	NA	NA
WP_169709972.1\|953704_954166_-	hypothetical protein	NA	NA	NA	NA
WP_004085022.1\|954155_954485_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_169709973.1\|954477_954978_-	lysozyme	I2GUG4	Acinetobacter_phage	8.6e-27	52.1
WP_169709899.1\|954944_955562_-	hypothetical protein	V5YTF6	Pseudomonas_phage	4.0e-26	52.2
WP_169709974.1\|956551_959083_-	DNA primase	C8CLH6	Xylella_phage	0.0e+00	75.0
WP_169709975.1\|959220_959829_-	hypothetical protein	C8CLH5	Xylella_phage	2.2e-48	56.5
WP_076613265.1\|959825_960110_-	hypothetical protein	C8CLH4	Xylella_phage	1.2e-22	64.8
WP_004085338.1\|960106_960355_-	hypothetical protein	NA	NA	NA	NA
WP_004085135.1\|960351_960540_-	hypothetical protein	NA	NA	NA	NA
WP_169709976.1\|960593_960818_-	hypothetical protein	NA	NA	NA	NA
WP_004085337.1\|960807_961044_-	hypothetical protein	NA	NA	NA	NA
WP_004085133.1\|961081_961852_+	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	5.6e-33	40.7
WP_004085336.1\|961885_962482_+	hypothetical protein	NA	NA	NA	NA
WP_169709977.1\|962662_963223_+	hypothetical protein	C8CLG9	Xylella_phage	2.6e-08	34.8
WP_128283727.1\|963219_963681_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_012337859.1\|963677_964085_+	hypothetical protein	C8CLG7	Xylella_phage	8.2e-52	79.3
WP_004086069.1\|964081_964273_+	hypothetical protein	NA	NA	NA	NA
WP_038233160.1\|964296_964488_+	hypothetical protein	C8CLG6	Xylella_phage	3.1e-17	76.6
WP_004086187.1\|964519_964714_+	hypothetical protein	C8CLG5	Xylella_phage	1.6e-26	98.4
WP_169709978.1\|964703_965201_+	hypothetical protein	C8CLG4	Xylella_phage	2.6e-52	95.4
WP_169710149.1\|966473_967040_+	DUF2815 family protein	C8CLG2	Xylella_phage	7.8e-101	95.2
WP_169710117.1\|967126_968278_+	hypothetical protein	C8CLG1	Xylella_phage	6.5e-195	89.7
WP_169710150.1\|968279_970460_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	96.4
WP_169710151.1\|970456_970735_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	2.8e-43	95.6
WP_004083464.1\|970736_971063_-	hypothetical protein	NA	NA	NA	NA
WP_169710152.1\|971147_972566_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	3.8e-269	96.6
WP_169709983.1\|972562_972859_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	4.5e-07	48.1
WP_169709984.1\|972870_973932_+\|integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	5.8e-97	54.1
974035:974051	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1060701 : 1081107

Xylella_phage(72.22%)

holin,integrase

attL 1047454:1047467|attR 1062789:1062802

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1047454:1047467	attL	NA	NA	NA	NA
WP_004083657.1\|1060701_1061721_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.5e-171	90.0
WP_049756312.1\|1062028_1062469_+	SocA family protein	K4NZT7	Burkholderia_phage	9.9e-11	33.3
WP_004083655.1\|1062565_1063108_-	pilin	NA	NA	NA	NA
1062789:1062802	attR	NA	NA	NA	NA
WP_004084093.1\|1063347_1063701_-	hypothetical protein	C8CLJ8	Xylella_phage	3.4e-22	54.7
WP_004083654.1\|1063697_1064480_-	hypothetical protein	C8CLJ7	Xylella_phage	4.5e-91	66.0
WP_080513455.1\|1065148_1065538_-	hypothetical protein	C8CLJ3	Xylella_phage	1.2e-28	61.2
WP_004083651.1\|1065978_1067190_-	hypothetical protein	C8CLJ2	Xylella_phage	1.6e-119	61.7
WP_012337788.1\|1067193_1067949_-	hypothetical protein	C8CLJ1	Xylella_phage	2.7e-56	72.5
WP_169709989.1\|1067998_1068244_-	hypothetical protein	C8CLJ0	Xylella_phage	2.9e-28	79.2
WP_004083648.1\|1069878_1070286_-	hypothetical protein	C8CLI8	Xylella_phage	2.5e-32	60.3
WP_004083647.1\|1070289_1071519_-	hypothetical protein	C8CLI7	Xylella_phage	3.0e-166	71.8
WP_004083646.1\|1071556_1072414_-	hypothetical protein	C8CLI6	Xylella_phage	1.7e-46	49.3
WP_004083645.1\|1072433_1074455_-	hypothetical protein	C8CLI5	Xylella_phage	3.2e-298	77.7
WP_004083644.1\|1074457_1075876_-	DNA packaging protein	C8CLI4	Xylella_phage	3.0e-234	80.6
WP_021358615.1\|1075781_1076108_-	hypothetical protein	C8CLI3	Xylella_phage	3.1e-33	63.9
WP_004083643.1\|1076858_1077212_-	hypothetical protein	NA	NA	NA	NA
WP_004083642.1\|1077213_1077528_-\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	6.2e-07	32.3
WP_012337789.1\|1077520_1078015_-	lysozyme	A0A2I7RLY1	Vibrio_phage	2.6e-28	53.8
WP_004083639.1\|1078114_1078636_-	site-specific DNA-methyltransferase	A0A097EWK8	Mycobacterium_phage	8.6e-38	53.2
WP_128283765.1\|1078620_1081107_+	hypothetical protein	A0A2D2W222	Stenotrophomonas_phage	3.8e-59	31.1

DBSCAN-SWA_5

1261260 : 1306431

Haemophilus_phage(20.0%)

holin,terminase,tail,integrase,plate,head

attL 1265827:1265872|attR 1310090:1310135

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169710160.1\|1261260_1262556_+	hypothetical protein	Q94MX3	Xanthomonas_phage	7.7e-19	47.7
WP_021358671.1\|1262568_1262898_+	hypothetical protein	NA	NA	NA	NA
WP_154128177.1\|1262897_1264232_+	Zonular occludens toxin	Q4LAU4	Stenotrophomonas_phage	5.0e-114	49.2
WP_038230212.1\|1264393_1264705_-	hypothetical protein	NA	NA	NA	NA
WP_154128173.1\|1264967_1265798_+\|integrase	tyrosine-type recombinase/integrase	Q7Y5X7	Haemophilus_phage	5.2e-61	46.2
1265827:1265872	attL	NA	NA	NA	NA
WP_169709952.1\|1265891_1267076_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	6.7e-94	47.3
WP_128723906.1\|1267075_1267351_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	2.2e-08	51.7
WP_154128441.1\|1267369_1267816_-	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	1.4e-33	52.9
WP_038231394.1\|1267882_1268518_-	phage antirepressor protein	A4PE61	Ralstonia_virus	1.7e-19	48.0
WP_169710161.1\|1268889_1270542_-	YqaJ viral recombinase family protein	U6C712	Ralstonia_phage	4.6e-93	36.6
WP_154437015.1\|1270538_1271459_-	phage recombination protein Bet	U6C6J0	Ralstonia_phage	4.1e-59	49.8
WP_004086371.1\|1271474_1272296_-	DUF2303 family protein	K7ZMK3	Xanthomonas_citri_phage	2.7e-54	43.3
WP_169709949.1\|1272317_1272680_-	hypothetical protein	U5P4J6	Shigella_phage	1.7e-16	43.8
WP_169709948.1\|1272700_1272892_-	hypothetical protein	C8CLG6	Xylella_phage	1.3e-15	71.9
WP_004086367.1\|1273010_1273538_-	hypothetical protein	NA	NA	NA	NA
WP_004086365.1\|1273581_1273773_-	hypothetical protein	NA	NA	NA	NA
WP_154128431.1\|1273769_1274177_-	hypothetical protein	C8CLG7	Xylella_phage	2.6e-53	82.2
WP_027700621.1\|1274173_1274644_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_038231390.1\|1274640_1275078_-	hypothetical protein	NA	NA	NA	NA
WP_004086362.1\|1275188_1275644_-	hypothetical protein	NA	NA	NA	NA
WP_004087046.1\|1276037_1276226_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_004087040.1\|1276222_1276834_+	Fic family protein	NA	NA	NA	NA
WP_169710212.1\|1276884_1277559_-	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	9.9e-18	30.1
WP_169710162.1\|1277643_1277889_+	hypothetical protein	NA	NA	NA	NA
WP_154128206.1\|1278147_1278339_+	hypothetical protein	NA	NA	NA	NA
WP_020851634.1\|1278366_1278555_+	hypothetical protein	NA	NA	NA	NA
WP_038231490.1\|1278551_1278800_+	hypothetical protein	NA	NA	NA	NA
WP_169710163.1\|1278796_1279180_+	hypothetical protein	NA	NA	NA	NA
WP_004086911.1\|1279382_1280495_+	hypothetical protein	C8CLG1	Xylella_phage	2.1e-110	58.6
WP_004086949.1\|1280615_1280906_+	hypothetical protein	NA	NA	NA	NA
WP_004086942.1\|1280961_1282038_+	DUF1376 domain-containing protein	A0A142K7R2	Mycobacterium_phage	5.4e-18	60.3
WP_004086944.1\|1281943_1282708_+	hypothetical protein	NA	NA	NA	NA
WP_169710031.1\|1282704_1283166_+	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	3.6e-11	42.1
WP_004086916.1\|1283294_1283993_+	hypothetical protein	C8CLH7	Xylella_phage	3.3e-101	83.5
WP_004086917.1\|1284156_1284657_+	lysozyme	A0A1B1UZH2	Plesiomonas_phage	1.1e-26	51.1
WP_004086918.1\|1284649_1284979_+\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	5.7e-19	44.0
WP_004086919.1\|1284968_1285430_+	hypothetical protein	A0A0S0N8C8	Pseudomonas_phage	4.0e-10	32.6
WP_004085111.1\|1285431_1285644_+	hypothetical protein	NA	NA	NA	NA
WP_020851957.1\|1286083_1287634_+\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	1.6e-111	44.3
WP_004087067.1\|1288975_1289821_+\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	1.2e-28	33.5
WP_012337902.1\|1289820_1291029_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	3.3e-40	42.2
WP_004085013.1\|1291038_1291521_+	hypothetical protein	NA	NA	NA	NA
WP_038231112.1\|1291530_1292514_+	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	1.1e-49	39.0
WP_169710029.1\|1292577_1292949_+	hypothetical protein	NA	NA	NA	NA
WP_004085010.1\|1292951_1293323_+	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	5.2e-13	38.3
WP_004085009.1\|1293319_1293799_+	hypothetical protein	M4SN98	Psychrobacter_phage	7.8e-09	29.5
WP_012337896.1\|1293773_1294154_+	hypothetical protein	Q776V7	Haemophilus_phage	6.5e-19	40.4
WP_004085008.1\|1294077_1294611_+	hypothetical protein	NA	NA	NA	NA
WP_004085007.1\|1294611_1296108_+	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	6.4e-126	48.4
WP_004085006.1\|1296117_1296555_+	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.0e-43	61.0
WP_004085005.1\|1296551_1296974_+	hypothetical protein	NA	NA	NA	NA
WP_169710164.1\|1297121_1299011_+	hypothetical protein	D0UII2	Aggregatibacter_phage	1.0e-24	28.0
WP_004085596.1\|1299288_1299549_+	hypothetical protein	NA	NA	NA	NA
WP_169710165.1\|1299908_1300679_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	1.7e-29	36.1
WP_012382585.1\|1300678_1300996_+	hypothetical protein	NA	NA	NA	NA
WP_004085594.1\|1300992_1301823_+	hypothetical protein	D0UIH8	Aggregatibacter_phage	6.8e-77	51.5
WP_169710166.1\|1301819_1302461_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	7.4e-31	36.8
WP_004084998.1\|1302457_1302811_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	5.7e-25	50.4
WP_004085592.1\|1302866_1303160_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_004085590.1\|1303162_1303459_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.0e-24	54.7
WP_169710167.1\|1303561_1304707_+\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	6.2e-97	49.2
WP_004084996.1\|1304703_1305264_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.5e-07	26.8
WP_169710168.1\|1305267_1306431_+\|tail	tail fiber protein	A4PE46	Ralstonia_virus	1.9e-08	32.0
1310090:1310135	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1311982 : 1321356

Stenotrophomonas_phage(50.0%)

integrase

attL 1317600:1317635|attR 1319535:1319570

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004084066.1\|1311982_1313158_+	replication initiation factor domain-containing protein	S0F3F7	Stenotrophomonas_phage	6.6e-78	45.8
WP_038230964.1\|1313198_1313510_+	hypothetical protein	NA	NA	NA	NA
WP_012337834.1\|1313634_1313886_+	hypothetical protein	NA	NA	NA	NA
WP_169710172.1\|1314161_1315493_+	hypothetical protein	Q94MX3	Xanthomonas_phage	7.9e-19	47.7
WP_021358671.1\|1315505_1315835_+	hypothetical protein	NA	NA	NA	NA
WP_154128177.1\|1315834_1317169_+	Zonular occludens toxin	Q4LAU4	Stenotrophomonas_phage	5.0e-114	49.2
WP_038210426.1\|1317330_1317558_-	hypothetical protein	NA	NA	NA	NA
1317600:1317635	attL	NA	NA	NA	NA
WP_154162046.1\|1317824_1318655_+\|integrase	tyrosine-type recombinase/integrase	Q7Y5X7	Haemophilus_phage	2.5e-63	46.2
WP_169710007.1\|1319197_1319548_+	hypothetical protein	Q38057	Xanthomonas_phage	1.8e-07	53.1
WP_154128127.1\|1319620_1319860_+	hypothetical protein	NA	NA	NA	NA
1319535:1319570	attR	NA	NA	NA	NA
WP_169710173.1\|1320021_1321356_-	Zonular occludens toxin	Q4LAU4	Stenotrophomonas_phage	1.5e-113	49.7

DBSCAN-SWA_7

1363883 : 1397173

Xylella_phage(93.33%)

holin,integrase

attL 1371665:1371681|attR 1400344:1400360

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145510549.1\|1363883_1364138_+	hypothetical protein	C8CLJ4	Xylella_phage	4.6e-37	96.4
WP_128283844.1\|1367091_1367799_-	hypothetical protein	C8CLJ1	Xylella_phage	2.8e-79	71.5
WP_071869785.1\|1367829_1368075_-	hypothetical protein	C8CLJ0	Xylella_phage	9.3e-35	97.2
WP_154128311.1\|1368044_1369973_-	hypothetical protein	C8CLI9	Xylella_phage	0.0e+00	96.9
WP_071869787.1\|1369969_1370377_-	hypothetical protein	C8CLI8	Xylella_phage	7.4e-69	98.5
WP_169710015.1\|1370397_1371624_-	hypothetical protein	C8CLI7	Xylella_phage	4.9e-225	97.8
1371665:1371681	attL	NA	NA	NA	NA
WP_128283841.1\|1371666_1372521_-	hypothetical protein	C8CLI6	Xylella_phage	1.6e-126	98.2
WP_128283854.1\|1372522_1374595_-	hypothetical protein	C8CLI5	Xylella_phage	0.0e+00	99.0
WP_145510546.1\|1374597_1376013_-	DNA packaging protein	C8CLI4	Xylella_phage	8.6e-282	99.4
WP_071869792.1\|1375921_1376248_-	hypothetical protein	C8CLI3	Xylella_phage	7.8e-53	99.1
WP_128283839.1\|1376247_1376562_-	hypothetical protein	C8CLI2	Xylella_phage	4.8e-52	99.0
WP_038211741.1\|1376889_1377219_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_169710016.1\|1377211_1377712_-	lysozyme	A0A1B1UZH2	Plesiomonas_phage	3.3e-26	51.1
WP_154436993.1\|1377811_1378543_-	site-specific DNA-methyltransferase	A0A2P1CGF5	Mycobacterium_phage	3.2e-62	51.3
WP_169710017.1\|1378631_1379354_-	hypothetical protein	C8CLH7	Xylella_phage	7.8e-122	95.0
WP_169710018.1\|1380453_1382982_-	DNA primase	C8CLH6	Xylella_phage	0.0e+00	75.6
WP_012337852.1\|1383118_1383700_-	phage antirepressor	C8CLH5	Xylella_phage	1.5e-30	60.4
WP_012337854.1\|1383959_1384343_-	hypothetical protein	C8CLH2	Xylella_phage	3.6e-57	89.7
WP_021358651.1\|1384430_1384760_-	hypothetical protein	NA	NA	NA	NA
WP_169710019.1\|1384749_1384965_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_169710020.1\|1385003_1385741_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_169710179.1\|1386028_1386589_+	hypothetical protein	C8CLG9	Xylella_phage	2.6e-08	34.8
WP_128283727.1\|1386585_1387047_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_012337859.1\|1387043_1387451_+	hypothetical protein	C8CLG7	Xylella_phage	8.2e-52	79.3
WP_004086069.1\|1387447_1387639_+	hypothetical protein	NA	NA	NA	NA
WP_038233160.1\|1387662_1387854_+	hypothetical protein	C8CLG6	Xylella_phage	3.1e-17	76.6
WP_004086187.1\|1387885_1388080_+	hypothetical protein	C8CLG5	Xylella_phage	1.6e-26	98.4
WP_169709978.1\|1388069_1388567_+	hypothetical protein	C8CLG4	Xylella_phage	2.6e-52	95.4
WP_012337864.1\|1388563_1389841_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	5.0e-228	93.4
WP_169710149.1\|1389840_1390407_+	DUF2815 family protein	C8CLG2	Xylella_phage	7.8e-101	95.2
WP_169710117.1\|1390493_1391645_+	hypothetical protein	C8CLG1	Xylella_phage	6.5e-195	89.7
WP_169710150.1\|1391646_1393827_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	96.4
WP_169710151.1\|1393823_1394102_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	2.8e-43	95.6
WP_162522143.1\|1394103_1394409_-	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_169710180.1\|1394493_1395912_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.5e-270	96.8
WP_012337666.1\|1395908_1396154_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.2e-29	80.5
WP_012337868.1\|1396153_1397173_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	6.6e-167	87.0
1400344:1400360	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1495464 : 1516128

Haemophilus_phage(36.84%)

head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004084990.1\|1495464_1496340_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.9e-09	25.2
WP_004084992.1\|1496336_1497305_+	hypothetical protein	NA	NA	NA	NA
WP_004084994.1\|1497563_1498010_+	hypothetical protein	NA	NA	NA	NA
WP_169710182.1\|1498202_1499360_-\|tail	tail fiber protein	A4PE46	Ralstonia_virus	2.5e-08	32.0
WP_004084996.1\|1499363_1499924_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.5e-07	26.8
WP_169709941.1\|1501160_1501514_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	7.4e-25	50.4
WP_004084999.1\|1501510_1502152_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	5.7e-31	36.8
WP_169709942.1\|1502148_1502979_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	5.2e-77	51.5
WP_012382585.1\|1502975_1503293_-	hypothetical protein	NA	NA	NA	NA
WP_169710078.1\|1503292_1504063_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	2.6e-30	34.1
WP_024749166.1\|1504150_1504450_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.9e-19	49.5
WP_004085003.1\|1504453_1504762_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.4e-16	46.7
WP_169710183.1\|1504835_1506725_-	hypothetical protein	D0UII2	Aggregatibacter_phage	3.1e-24	27.7
WP_169710028.1\|1506872_1507295_-	hypothetical protein	NA	NA	NA	NA
WP_004085006.1\|1507291_1507729_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.0e-43	61.0
WP_128283792.1\|1507738_1509235_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	2.2e-126	48.6
WP_012337896.1\|1509691_1510072_-	hypothetical protein	Q776V7	Haemophilus_phage	6.5e-19	40.4
WP_004085009.1\|1510046_1510526_-	hypothetical protein	M4SN98	Psychrobacter_phage	7.8e-09	29.5
WP_004085010.1\|1510522_1510894_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	5.2e-13	38.3
WP_169710029.1\|1510896_1511268_-	hypothetical protein	NA	NA	NA	NA
WP_038231112.1\|1511329_1512313_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	1.1e-49	39.0
WP_012337902.1\|1512813_1514022_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	3.3e-40	42.2
WP_004087067.1\|1514021_1514867_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	1.2e-28	33.5
WP_080513457.1\|1514778_1516128_-	DUF1073 domain-containing protein	B5AX38	Iodobacteriophage	8.2e-64	37.4

DBSCAN-SWA_9

1533948 : 1539918

Xylella_phage(50.0%)

integrase

attL 1526111:1526127|attR 1542944:1542960

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1526111:1526127	attL	NA	NA	NA	NA
WP_004085696.1\|1533948_1534287_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_004085695.1\|1534273_1534534_-	BrnT family toxin	K4NX81	Burkholderia_phage	5.7e-06	40.7
WP_004085694.1\|1534722_1535421_-	hypothetical protein	C8CLH7	Xylella_phage	4.8e-100	81.7
WP_169710031.1\|1535549_1536011_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	3.6e-11	42.1
WP_004085691.1\|1536007_1536772_-	hypothetical protein	NA	NA	NA	NA
WP_012337914.1\|1537503_1538019_-	hypothetical protein	NA	NA	NA	NA
WP_004085686.1\|1538392_1538632_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_038231301.1\|1538650_1538899_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.9e-35	86.6
WP_169710032.1\|1538898_1539918_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.4e-169	88.5
1542944:1542960	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1699951 : 1706073

Xylella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004083461.1\|1699951_1700248_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.4e-07	48.1
WP_169710044.1\|1700244_1700559_-	hypothetical protein	C8CLF7	Xylella_phage	2.3e-33	96.1
WP_038230497.1\|1702178_1702457_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	7.3e-44	95.6
WP_004085897.1\|1702458_1702905_-	hypothetical protein	NA	NA	NA	NA
WP_004085894.1\|1702989_1704402_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	2.7e-227	96.2
WP_169710045.1\|1704741_1705473_+	site-specific DNA-methyltransferase	A0A2P1CGF5	Mycobacterium_phage	2.4e-62	51.7
WP_012337659.1\|1705572_1706073_+	lysozyme	A0A1B1UZH2	Plesiomonas_phage	3.3e-26	51.1

DBSCAN-SWA_11

2090017 : 2102136

Stenotrophomonas_phage(12.5%)

portal,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004086806.1\|2090017_2092333_-\|protease	Clp protease ClpP	B7SYD7	Stenotrophomonas_phage	8.8e-82	42.3
WP_004086805.1\|2092329_2093892_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.6e-90	39.0
WP_004086802.1\|2093888_2094263_-	hypothetical protein	NA	NA	NA	NA
WP_004086800.1\|2094201_2096301_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	1.1e-75	30.6
WP_020851759.1\|2096297_2096897_-	hypothetical protein	A0A2I7S8M0	Vibrio_phage	5.0e-05	39.8
WP_004086794.1\|2097293_2098760_-	virulence factor	A0A2D1GN57	Marinobacter_phage	6.0e-60	33.1
WP_004086792.1\|2098756_2099812_-	Zn-finger, CHC2 type	A0A1S5RGL3	Helicobacter_phage	5.1e-13	41.2
WP_038231455.1\|2099810_2100212_+	hypothetical protein	NA	NA	NA	NA
WP_004086790.1\|2100313_2100937_-	hypothetical protein	NA	NA	NA	NA
WP_038231453.1\|2100994_2101345_-	hypothetical protein	NA	NA	NA	NA
WP_004086788.1\|2101331_2101628_-	transcriptional regulator	D0UIL8	Aggregatibacter_phage	4.2e-13	57.1
WP_004086786.1\|2101704_2102136_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.0e-15	58.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP052854

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection