CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP052877	Escherichia coli strain C21 chromosome, complete genome	9 crisprs	csa3,PD-DExK,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,DEDDh,c2c9_V-U4,DinG	12	7
NZ_CP052878	Escherichia coli strain C21 plasmid pC21-1, complete sequence	0 crisprs	NA	0	0
NZ_CP052879	Escherichia coli strain C21 plasmid pC21-2, complete sequence	1 crisprs	NA	1	1
NZ_CP052881	Escherichia coli strain C21 plasmid pC21-4, complete sequence	0 crisprs	NA	0	2
NZ_CP052880	Escherichia coli strain C21 plasmid pC21-3, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052877_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_1

596167-596565

Orphan

Consensus_repeat	Method
AGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP052877_1

>merge|NZ_CP052877|1|596167-596565|PILER-CR
AGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGATGTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAAGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGATGTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCCAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGATGTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCCAAAGAAAGCGGCTTATCG

>NZ_CP052877|1|1|596167-596565|PILER-CR
AGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCG	GTCAGTTTCACCTGATGTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGA
AGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCG	GTCAGTTTCACCTGATGTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGG
AGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCCAAAGAAAGCGGCTTATCG	GTCAGTTTCACCTGATGTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGG
AGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCCAAAGAAAGCGGCTTATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_001303675.1\|593582_594473_+\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
NZ_CP052877.1\|WP_000599636.1\|591432_592767_+\|galactarate/glucarate/glycerate-transporter-GarP	unknown	unknown	gnl\|CDD\|273326
NZ_CP052877.1\|WP_000681921.1\|586145_587426_-\|tagatose-bisphosphate-aldolase-subunit-KbaZ	unknown	unknown	gnl\|CDD\|185355
NZ_CP052877.1\|WP_000548347.1\|601163_602153_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP052877.1\|WP_073461570.1\|589002_589338_-\|type-II-toxin-antitoxin-system-antitoxin-PrlF	unknown	unknown	gnl\|CDD\|236638
NZ_CP052877.1\|WP_001273741.1\|589486_591058_-\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
NZ_CP052877.1\|WP_000675733.1\|598798_599338_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052877.1\|WP_073461569.1\|592782_593553_+\|2-dehydro-3-deoxyglucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
NZ_CP052877.1\|WP_000104211.1\|600126_601065_+\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP052877.1\|WP_000347266.1\|588538_589003_-\|type-II-toxin-antitoxin-system-ribonuclease-toxin-YhaV	unknown	unknown	gnl\|CDD\|371659
NZ_CP052877.1\|WP_000107721.1\|602174_603506_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
NZ_CP052877.1\|WP_073461759.1\|607081_607471_+\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP052877.1\|WP_001300387.1\|594569_595715_+\|glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392
NZ_CP052877.1\|WP_000622126.1\|607542_608907_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
NZ_CP052877.1\|WP_073461756.1\|598372_598777_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182043
NZ_CP052877.1\|WP_073461757.1\|603531_604740_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP052877.1\|WP_001295547.1\|585649_586123_-\|PTS-N-acetylgalactosamine-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|183129
NZ_CP052877.1\|WP_073461758.1\|604773_607068_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|153087
NZ_CP052877.1\|WP_000145840.1\|599593_599938_-\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
NZ_CP052877.1\|WP_000072187.1\|587674_588484_+\|aga-operon-transcriptional-regulator-AgaR	unknown	unknown	gnl\|CDD\|182086

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_001303675.1\|593582_594473_+\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
NZ_CP052877.1\|WP_000599636.1\|591432_592767_+\|galactarate/glucarate/glycerate-transporter-GarP	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	7.8374e-134
NZ_CP052877.1\|WP_000681921.1\|586145_587426_-\|tagatose-bisphosphate-aldolase-subunit-KbaZ	gnl\|CDD\|185355	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional.	0
NZ_CP052877.1\|WP_000548347.1\|601163_602153_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP052877.1\|WP_073461570.1\|589002_589338_-\|type-II-toxin-antitoxin-system-antitoxin-PrlF	gnl\|CDD\|236638	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin.	6.08076e-51
NZ_CP052877.1\|WP_001273741.1\|589486_591058_-\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
NZ_CP052877.1\|WP_073461569.1\|592782_593553_+\|2-dehydro-3-deoxyglucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
NZ_CP052877.1\|WP_000104211.1\|600126_601065_+\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP052877.1\|WP_000347266.1\|588538_589003_-\|type-II-toxin-antitoxin-system-ribonuclease-toxin-YhaV	gnl\|CDD\|371659	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system. YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity.	8.32738e-72
NZ_CP052877.1\|WP_000107721.1\|602174_603506_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
NZ_CP052877.1\|WP_073461759.1\|607081_607471_+\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	3.08766e-82
NZ_CP052877.1\|WP_001300387.1\|594569_595715_+\|glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
NZ_CP052877.1\|WP_000622126.1\|607542_608907_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
NZ_CP052877.1\|WP_073461756.1\|598372_598777_-\|hypothetical-protein	gnl\|CDD\|182043	PRK09716, PRK09716, YhaC family protein.	5.08522e-84
NZ_CP052877.1\|WP_073461757.1\|603531_604740_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP052877.1\|WP_001295547.1\|585649_586123_-\|PTS-N-acetylgalactosamine-transporter-subunit-IIB	gnl\|CDD\|183129	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB.	2.31755e-109
NZ_CP052877.1\|WP_073461758.1\|604773_607068_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP052877.1\|WP_000145840.1\|599593_599938_-\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	8.0507e-67
NZ_CP052877.1\|WP_000072187.1\|587674_588484_+\|aga-operon-transcriptional-regulator-AgaR	gnl\|CDD\|182086	PRK09802, PRK09802, DeoR family transcriptional regulator.	0

>NZ_CP052877.1|WP_001300387.1|594569_595715_+|glycerate-2-kinase
MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATQGAERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAEKRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNEIGFGGGSLNTLNDIDISGLDPRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAMIVELDNNLSHYAEVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTALNLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVHQHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG
>NZ_CP052877.1|WP_001303675.1|593582_594473_+|2-hydroxy-3-oxopropionate-reductase
MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR
>NZ_CP052877.1|WP_073461569.1|592782_593553_+|2-dehydro-3-deoxyglucarate-aldolase
MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRSATQKLADIFKK
>NZ_CP052877.1|WP_000599636.1|591432_592767_+|galactarate/glucarate/glycerate-transporter-GarP
MILDTVDEKKKGVHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHVFTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGYLVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK
>NZ_CP052877.1|WP_001273741.1|589486_591058_-|galactarate-dehydratase
MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPAPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLVGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQVAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT
>NZ_CP052877.1|WP_073461570.1|589002_589338_-|type-II-toxin-antitoxin-system-antitoxin-PrlF
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIDDDE
>NZ_CP052877.1|WP_000347266.1|588538_589003_-|type-II-toxin-antitoxin-system-ribonuclease-toxin-YhaV
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKNKDWSRVKFGAGRYRFFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH
>NZ_CP052877.1|WP_000072187.1|587674_588484_+|aga-operon-transcriptional-regulator-AgaR
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
>NZ_CP052877.1|WP_000681921.1|586145_587426_-|tagatose-bisphosphate-aldolase-subunit-KbaZ
MKHLTEMVRQHKAGKTNGIYAVCSAHPLVLEAAIRYASANQTPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCLEHFGEADLEYVIGTEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIALVVQPGVEFDHTNVIDYQPAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLVIDHFAILKVGPALTFALREALFSLAAIEEELVPAKACSGLRQVLEDVMLDRPEYWQSHYHGDGNARRLARGYSYSDRVRYYWPDSQIDDAFAHLVRNLADSPIPLPLISQYLPLQYVKVRSGELQPTPRELIINHIQDILAQYYTACEGQ
>NZ_CP052877.1|WP_001295547.1|585649_586123_-|PTS-N-acetylgalactosamine-transporter-subunit-IIB
MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKILLVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKAAGVECFVQGVPTEPAVDLFKLL
>NZ_CP052877.1|WP_073461756.1|598372_598777_-|hypothetical-protein
MFPVSSIGNDISSDLVRRKMNDLPESPIGNNLEALAPGIEKLKQTSIEMVTLLNALQPGGKCIITGDFQKELAYLQNVILYNDSSLRLDFLGYNAQIIQRSDNTCELTINEPLKNQKISTGNININCPLKYIYN
>NZ_CP052877.1|WP_000675733.1|598798_599338_-|hypothetical-protein
MKGFPIAHIFHPSIPPMHAVVNNHNRNIDYWTVKRKFAEIVSTNDVNKIYSISNELRRVLSAITALNFYHGDVPSVMIRIQPENMSPFIIDISTGEHDDYIIQTLDVGTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTRKEAILTPLVHFNKTSITSDCWQILFFSPDHFNNDFY
>NZ_CP052877.1|WP_000145840.1|599593_599938_-|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSSDRTSFCECNRFP
>NZ_CP052877.1|WP_000104211.1|600126_601065_+|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>NZ_CP052877.1|WP_000548347.1|601163_602153_+|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>NZ_CP052877.1|WP_000107721.1|602174_603506_+|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTLSMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>NZ_CP052877.1|WP_073461757.1|603531_604740_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEDALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVVIDTEMNNRSNSLGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>NZ_CP052877.1|WP_073461758.1|604773_607068_+|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELVDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>NZ_CP052877.1|WP_073461759.1|607081_607471_+|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQASLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>NZ_CP052877.1|WP_000622126.1|607542_608907_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEELLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG

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Crispr_ID: NZ_CP052877_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_2

1012810-1013387

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GNGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR

9 spacers

The CRISPR arrays of NZ_CP052877_2

>merge|NZ_CP052877|2|1012810-1013387|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAATAGCATGAATGACGCGCTAGAGCGGGCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTGTTTTCACATGTTTTGTCACGGAAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTATTATTCAGCATGAAAATGGCTCAATGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCAAAGTTATGCCGGGCCGTCCGGTGCCGAACTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGCAGAGCGCGACGCTCAGAAATGAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGAGCTCCCCGCGCCAGCGGGGATAAACCGTTCTTGCGGGTGTTGCAAATATTCTTCACGTAGAGCTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP052877|2|1|1012810-1013387|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATAGCATGAATGACGCGCTAGAGCGGGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGTTTTCACATGTTTTGTCACGGAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTATTCAGCATGAAAATGGCTCAATGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	AAGTTATGCCGGGCCGTCCGGTGCCGAACTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGCAGAGCGCGACGCTCAGAAATGAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC
GAGCTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGCGGGTGTTGCAAATATTCTTCACGTA
GAGCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP052877|2|1|1012810-1013387|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATAGCATGAATGACGCGCTAGAGCGGGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGTTTTCACATGTTTTGTCACGGAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTATTCAGCATGAAAATGGCTCAATGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	AAGTTATGCCGGGCCGTCCGGTGCCGAACTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGCAGAGCGCGACGCTCAGAAATGAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC
GAGCTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGCGGGTGTTGCAAATATTCTTCACGTA
GAGCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP052877|2|2|1012812-1013386|PILER-CR
GTTCCCCGCGCCAGCGGGGATAAACC	GGAATAGCATGAATGACGCGCTAGAGCGGGCTTGT
GTTCCCCGCGCCAGCGGGGATAAACC	GCCCTGTTTTCACATGTTTTGTCACGGAAAAATGT
GTTCCCCGCGCCAGCGGGGATAAACC	GTATTATTCAGCATGAAAATGGCTCAATGCCATGT
GTTCCCCGCGCCAGCGGGGATAAACC	AAAGTTATGCCGGGCCGTCCGGTGCCGAACTCCGT
GTTCCCCGCGCCAGCGGGGATAAACC	GAACAGGCAGAGCGCGACGCTCAGAAATGAAAAGT
GTTCCCCGCGCCAGCGGGGATAAACC	GTAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGA
GCTCCCCGCGCCAGCGGGGATAAACC	GTTCTTGCGGGTGTTGCAAATATTCTTCACGTAGA
GCTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGA
GTTCCCCGCGCCAGCGGGGATAAACC	GGACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGA
GTTCCCCGCGCCAGCGGGGATAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_073461795.1\|1011520_1011661_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052877.1\|WP_000059300.1\|1018289_1019744_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP052877.1\|WP_001295150.1\|1023779_1025051_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP052877.1\|WP_001164578.1\|1015529_1016807_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP052877.1\|WP_000036723.1\|1008502_1009801_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP052877.1\|WP_000039693.1\|1014024_1015503_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP052877.1\|WP_000108294.1\|1025128_1025491_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP052877.1\|WP_000109526.1\|1023528_1023789_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP052877.1\|WP_000046790.1\|1001443_1002745_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP052877.1\|WP_073461796.1\|1010757_1011507_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP052877.1\|WP_000147666.1\|1019765_1021175_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP052877.1\|WP_001199979.1\|1011799_1012471_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP052877.1\|WP_016245035.1\|1021928_1022789_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP052877.1\|WP_000254738.1\|1005352_1005688_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP052877.1\|WP_073461690.1\|1006777_1008415_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP052877.1\|WP_000581937.1\|1005104_1005353_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP052877.1\|WP_073461633.1\|1021152_1021932_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP052877.1\|WP_000226815.1\|1002792_1005027_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP052877.1\|WP_001071648.1\|1005758_1006550_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP052877.1\|WP_001130266.1\|1022936_1023512_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_000226815.1\|1002792_1005027_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP052877.1\|WP_001295150.1\|1023779_1025051_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
NZ_CP052877.1\|WP_001199979.1\|1011799_1012471_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
NZ_CP052877.1\|WP_000108294.1\|1025128_1025491_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.01593e-59
NZ_CP052877.1\|WP_000036723.1\|1008502_1009801_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP052877.1\|WP_000039693.1\|1014024_1015503_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.97427e-109
NZ_CP052877.1\|WP_000109526.1\|1023528_1023789_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.81311e-41
NZ_CP052877.1\|WP_000046790.1\|1001443_1002745_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP052877.1\|WP_001130266.1\|1022936_1023512_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP052877.1\|WP_073461796.1\|1010757_1011507_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.30468e-86
NZ_CP052877.1\|WP_000147666.1\|1019765_1021175_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP052877.1\|WP_073461690.1\|1006777_1008415_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP052877.1\|WP_016245035.1\|1021928_1022789_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.55248e-89
NZ_CP052877.1\|WP_000254738.1\|1005352_1005688_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP052877.1\|WP_000581937.1\|1005104_1005353_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP052877.1\|WP_073461633.1\|1021152_1021932_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.80152e-61
NZ_CP052877.1\|WP_001164578.1\|1015529_1016807_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.84544e-29
NZ_CP052877.1\|WP_001071648.1\|1005758_1006550_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP052877.1\|WP_000059300.1\|1018289_1019744_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	6.77396e-83

>NZ_CP052877.1|WP_001199979.1|1011799_1012471_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP052877.1|WP_073461795.1|1011520_1011661_-|hypothetical-protein
MSEENKENGFNHVKIFTRIIFIFSVLVFNDNESKITYAAVNLFIQI
>NZ_CP052877.1|WP_073461796.1|1010757_1011507_-|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSESESASSSDHYYFAIFWVFAVMFFPFCFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKTLSIAVFSFFFTFTIFMVFTCLCVR
>NZ_CP052877.1|WP_000036723.1|1008502_1009801_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP052877.1|WP_073461690.1|1006777_1008415_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARYVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP052877.1|WP_001071648.1|1005758_1006550_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP052877.1|WP_000254738.1|1005352_1005688_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP052877.1|WP_000581937.1|1005104_1005353_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP052877.1|WP_000226815.1|1002792_1005027_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP052877.1|WP_000046790.1|1001443_1002745_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP052877.1|WP_000039693.1|1014024_1015503_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP052877.1|WP_001164578.1|1015529_1016807_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP052877.1|WP_000059300.1|1018289_1019744_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP052877.1|WP_000147666.1|1019765_1021175_+|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP052877.1|WP_073461633.1|1021152_1021932_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCSTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP052877.1|WP_016245035.1|1021928_1022789_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFMVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP052877.1|WP_001130266.1|1022936_1023512_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP052877.1|WP_000109526.1|1023528_1023789_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP052877.1|WP_001295150.1|1023779_1025051_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>NZ_CP052877.1|WP_000108294.1|1025128_1025491_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE

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Crispr_ID: NZ_CP052877_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_3

1039299-1039633

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP052877_3

>merge|NZ_CP052877|3|1039299-1039633|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGCATTCTTGCCGCCATTCAGCGACGTAATCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGGGATTTATTGATAGCAGTTGGAAACGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAATCCTGCCGGGAAAAAATCGACAACCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCCGATTTCCCTGGCGTCAAAAGCGGTGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGATGAGAACGGCACCAGTTATCTGATTGTAAATGAGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP052877|3|3|1039299-1039572|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATTCTTGCCGCCATTCAGCGACGTAATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGGGATTTATTGATAGCAGTTGGAAACGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAATCCTGCCGGGAAAAAATCGACAACCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP052877|3|2|1039299-1039633|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATTCTTGCCGCCATTCAGCGACGTAATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGGGATTTATTGATAGCAGTTGGAAACGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAATCCTGCCGGGAAAAAATCGACAACCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGAGAACGGCACCAGTTATCTGATTGTAAAT
GAGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP052877|3|2|1039299-1039633|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATTCTTGCCGCCATTCAGCGACGTAATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGGGATTTATTGATAGCAGTTGGAAACGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAATCCTGCCGGGAAAAAATCGACAACCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGAGAACGGCACCAGTTATCTGATTGTAAAT
GAGTTCCCCGCATCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_000490426.1\|1039714_1040752_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP052877.1\|WP_073461636.1\|1041913_1043341_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP052877.1\|WP_001246104.1\|1043995_1044319_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP052877.1\|WP_000372108.1\|1041003_1041912_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP052877.1\|WP_001410943.1\|1029395_1030130_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP052877.1\|WP_073461637.1\|1046028_1047078_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP052877.1\|WP_000063180.1\|1038908_1039202_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP052877.1\|WP_077625608.1\|1030740_1033344_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP052877.1\|WP_000956458.1\|1030394_1030547_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP052877.1\|WP_001084112.1\|1033441_1035004_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP052877.1\|WP_001290706.1\|1027608_1029321_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP052877.1\|WP_044863709.1\|1037342_1037993_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP052877.1\|WP_001173673.1\|1043340_1043946_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP052877.1\|WP_000029329.1\|1035000_1035537_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP052877.1\|WP_001295182.1\|1047058_1047820_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP052877.1\|WP_073461635.1\|1035548_1036604_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP052877.1\|WP_000085068.1\|1036614_1037361_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP052877.1\|WP_001219242.1\|1045552_1046032_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP052877.1\|WP_000517476.1\|1044512_1044824_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP052877.1\|WP_000246138.1\|1044842_1045553_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_000490426.1\|1039714_1040752_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP052877.1\|WP_073461636.1\|1041913_1043341_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP052877.1\|WP_001246104.1\|1043995_1044319_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP052877.1\|WP_000372108.1\|1041003_1041912_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP052877.1\|WP_001410943.1\|1029395_1030130_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.79549e-137
NZ_CP052877.1\|WP_073461637.1\|1046028_1047078_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP052877.1\|WP_000063180.1\|1038908_1039202_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.43543e-65
NZ_CP052877.1\|WP_077625608.1\|1030740_1033344_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.5531e-160
NZ_CP052877.1\|WP_000956458.1\|1030394_1030547_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP052877.1\|WP_001084112.1\|1033441_1035004_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP052877.1\|WP_001290706.1\|1027608_1029321_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP052877.1\|WP_044863709.1\|1037342_1037993_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	2.70803e-90
NZ_CP052877.1\|WP_001173673.1\|1043340_1043946_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP052877.1\|WP_000029329.1\|1035000_1035537_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NZ_CP052877.1\|WP_001295182.1\|1047058_1047820_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP052877.1\|WP_073461635.1\|1035548_1036604_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.83186e-155
NZ_CP052877.1\|WP_000085068.1\|1036614_1037361_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.95914e-49
NZ_CP052877.1\|WP_001219242.1\|1045552_1046032_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP052877.1\|WP_000517476.1\|1044512_1044824_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP052877.1\|WP_000246138.1\|1044842_1045553_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121

>NZ_CP052877.1|WP_000063180.1|1038908_1039202_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWTTNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP052877.1|WP_044863709.1|1037342_1037993_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGVFRFFVLSQERPAESDIFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENTRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP052877.1|WP_000085068.1|1036614_1037361_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP052877.1|WP_073461635.1|1035548_1036604_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTSAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP052877.1|WP_000029329.1|1035000_1035537_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP052877.1|WP_001084112.1|1033441_1035004_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDISAPRADLQGAVWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALQSLEHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWINVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDEQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLDKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLSKWNKEIWLFARQDFDERVFTNPYEPVDLERVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP052877.1|WP_077625608.1|1030740_1033344_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHSRPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEFHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLILAPVLDDSPGDEWFGSAMRNSAFVYSDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NZ_CP052877.1|WP_000956458.1|1030394_1030547_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP052877.1|WP_001410943.1|1029395_1030130_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWESGMSEEETRFFGLKRECGLHEG
>NZ_CP052877.1|WP_001290706.1|1027608_1029321_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP052877.1|WP_000490426.1|1039714_1040752_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP052877.1|WP_000372108.1|1041003_1041912_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP052877.1|WP_073461636.1|1041913_1043341_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLAVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP052877.1|WP_001173673.1|1043340_1043946_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP052877.1|WP_001246104.1|1043995_1044319_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP052877.1|WP_000517476.1|1044512_1044824_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP052877.1|WP_000246138.1|1044842_1045553_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP052877.1|WP_001219242.1|1045552_1046032_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP052877.1|WP_073461637.1|1046028_1047078_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVDQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP052877.1|WP_001295182.1|1047058_1047820_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP052877_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_4

1563894-1564011

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052877_4

>merge|NZ_CP052877|4|1563894-1564011|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>NZ_CP052877|4|3|1563894-1564011|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_000150333.1\|1550690_1550876_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
NZ_CP052877.1\|WP_169711482.1\|1567011_1570764_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP052877.1\|WP_001295211.1\|1576221_1576845_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP052877.1\|WP_000135040.1\|1562412_1562667_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP052877.1\|WP_000786548.1\|1583887_1585072_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP052877.1\|WP_072163405.1\|1558974_1559289_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052877.1\|WP_001075164.1\|1564030_1566316_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP052877.1\|WP_000990756.1\|1570891_1571614_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_CP052877.1\|WP_001281229.1\|1571760_1574388_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP052877.1\|WP_122633159.1\|1576988_1581383_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP052877.1\|WP_000332037.1\|1562666_1563797_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP052877.1\|WP_001104488.1\|1581383_1583033_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP052877.1\|WP_001374259.1\|1550888_1551788_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP052877.1\|WP_000301049.1\|1561708_1562359_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP052877.1\|WP_001567753.1\|1583037_1583814_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP052877.1\|WP_000768974.1\|1557679_1558756_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP052877.1\|WP_000857251.1\|1554416_1556045_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP052877.1\|WP_000012305.1\|1574536_1576225_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP052877.1\|WP_001000370.1\|1551980_1553171_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP052877.1\|WP_001209908.1\|1553167_1554427_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_000150333.1\|1550690_1550876_-\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.35852e-30
NZ_CP052877.1\|WP_169711482.1\|1567011_1570764_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP052877.1\|WP_001295211.1\|1576221_1576845_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
NZ_CP052877.1\|WP_000135040.1\|1562412_1562667_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NZ_CP052877.1\|WP_000786548.1\|1583887_1585072_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP052877.1\|WP_001104488.1\|1581383_1583033_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.06112e-125
NZ_CP052877.1\|WP_001075164.1\|1564030_1566316_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP052877.1\|WP_000990756.1\|1570891_1571614_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	9.80223e-171
NZ_CP052877.1\|WP_001281229.1\|1571760_1574388_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP052877.1\|WP_122633159.1\|1576988_1581383_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP052877.1\|WP_000332037.1\|1562666_1563797_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP052877.1\|WP_001374259.1\|1550888_1551788_-\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_CP052877.1\|WP_000301049.1\|1561708_1562359_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.43283e-158
NZ_CP052877.1\|WP_001567753.1\|1583037_1583814_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.0163e-152
NZ_CP052877.1\|WP_000768974.1\|1557679_1558756_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP052877.1\|WP_000857251.1\|1554416_1556045_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP052877.1\|WP_000012305.1\|1574536_1576225_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP052877.1\|WP_001000370.1\|1551980_1553171_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP052877.1\|WP_001209908.1\|1553167_1554427_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0

>NZ_CP052877.1|WP_000332037.1|1562666_1563797_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_CP052877.1|WP_000135040.1|1562412_1562667_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_CP052877.1|WP_000301049.1|1561708_1562359_+|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP052877.1|WP_072163405.1|1558974_1559289_-|hypothetical-protein
MTNKLGGELIDIADKKLAPLINDSFSYTRDFFAYSKQENNIFTFDNSKFVDPKEKEGLMIQHSNGQLVITGKYCPEGVQTAFTQEQYDKLIRYINIFFTFPKCE
>NZ_CP052877.1|WP_000768974.1|1557679_1558756_+|glycerophosphodiester-phosphodiesterase
MKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYSYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDVLYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP052877.1|WP_000857251.1|1554416_1556045_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQDPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP052877.1|WP_001209908.1|1553167_1554427_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP052877.1|WP_001000370.1|1551980_1553171_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTAKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP052877.1|WP_001374259.1|1550888_1551788_-|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVKGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAKRSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>NZ_CP052877.1|WP_000150333.1|1550690_1550876_-|hypothetical-protein
MTIAERLRQEGHQIGWQEGKLEGLHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAANNH
>NZ_CP052877.1|WP_001075164.1|1564030_1566316_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP052877.1|WP_169711482.1|1567011_1570764_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLRVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKMVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP052877.1|WP_000990756.1|1570891_1571614_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEKHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNSFKLGPGVDVNYMLHTQNK
>NZ_CP052877.1|WP_001281229.1|1571760_1574388_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP052877.1|WP_000012305.1|1574536_1576225_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_CP052877.1|WP_001295211.1|1576221_1576845_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP052877.1|WP_122633159.1|1576988_1581383_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVDVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQVNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLITGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEIARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYMRSYAPAQQSVAAGSEWTRMQVK
>NZ_CP052877.1|WP_001104488.1|1581383_1583033_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEEPPLQLALRGAQHDQLYKLSSSGVTNVSTLPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMAAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP052877.1|WP_001567753.1|1583037_1583814_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPVEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP052877.1|WP_000786548.1|1583887_1585072_-|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFDPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: NZ_CP052877_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_5

2176689-2176812

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052877_5

>merge|NZ_CP052877|5|2176689-2176812|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP052877|5|4|2176689-2176812|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_001273517.1\|2169423_2171526_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP052877.1\|WP_000269501.1\|2183455_2184388_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP052877.1\|WP_000493947.1\|2180011_2180653_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP052877.1\|WP_000102278.1\|2185708_2185798_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP052877.1\|WP_000528342.1\|2167334_2167544_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP052877.1\|WP_001299088.1\|2171538_2172177_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP052877.1\|WP_001182363.1\|2182131_2183343_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP052877.1\|WP_000007283.1\|2187278_2187860_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP052877.1\|WP_000587560.1\|2173694_2174507_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP052877.1\|WP_001295403.1\|2165365_2166778_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP052877.1\|WP_000212657.1\|2176248_2176554_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP052877.1\|WP_000534295.1\|2177126_2178383_+\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP052877.1\|WP_000648420.1\|2164818_2165055_-\|murein-lipoprotein-Lpp	unknown	unknown	gnl\|CDD\|185294
NZ_CP052877.1\|WP_000098911.1\|2180692_2181841_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP052877.1\|WP_001070029.1\|2172905_2173691_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP052877.1\|WP_001349911.1\|2172240_2172909_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP052877.1\|WP_000701040.1\|2185963_2187133_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP052877.1\|WP_000716922.1\|2174518_2176123_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP052877.1\|WP_001174946.1\|2178423_2179797_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP052877.1\|WP_000190982.1\|2184384_2185410_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_001273517.1\|2169423_2171526_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP052877.1\|WP_000269501.1\|2183455_2184388_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP052877.1\|WP_000493947.1\|2180011_2180653_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP052877.1\|WP_000528342.1\|2167334_2167544_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP052877.1\|WP_001299088.1\|2171538_2172177_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.44183e-120
NZ_CP052877.1\|WP_001182363.1\|2182131_2183343_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP052877.1\|WP_000007283.1\|2187278_2187860_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP052877.1\|WP_000587560.1\|2173694_2174507_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	8.20825e-175
NZ_CP052877.1\|WP_001295403.1\|2165365_2166778_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP052877.1\|WP_000212657.1\|2176248_2176554_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
NZ_CP052877.1\|WP_000534295.1\|2177126_2178383_+\|AIDA-repeat-containing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP052877.1\|WP_000648420.1\|2164818_2165055_-\|murein-lipoprotein-Lpp	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
NZ_CP052877.1\|WP_000098911.1\|2180692_2181841_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP052877.1\|WP_001070029.1\|2172905_2173691_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.61336e-162
NZ_CP052877.1\|WP_001349911.1\|2172240_2172909_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.32003e-76
NZ_CP052877.1\|WP_000701040.1\|2185963_2187133_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP052877.1\|WP_000716922.1\|2174518_2176123_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP052877.1\|WP_001174946.1\|2178423_2179797_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP052877.1\|WP_000190982.1\|2184384_2185410_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0

>NZ_CP052877.1|WP_000212657.1|2176248_2176554_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP052877.1|WP_000716922.1|2174518_2176123_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP052877.1|WP_000587560.1|2173694_2174507_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC
>NZ_CP052877.1|WP_001070029.1|2172905_2173691_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQYAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP052877.1|WP_001349911.1|2172240_2172909_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP052877.1|WP_001299088.1|2171538_2172177_+|YdhW-family-putative-oxidoreductase-system-protein
MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSVAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP052877.1|WP_001273517.1|2169423_2171526_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP052877.1|WP_000528342.1|2167334_2167544_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP052877.1|WP_001295403.1|2165365_2166778_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP052877.1|WP_000648420.1|2164818_2165055_-|murein-lipoprotein-Lpp
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>NZ_CP052877.1|WP_000534295.1|2177126_2178383_+|AIDA-repeat-containing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP052877.1|WP_001174946.1|2178423_2179797_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVKPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>NZ_CP052877.1|WP_000493947.1|2180011_2180653_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP052877.1|WP_000098911.1|2180692_2181841_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP052877.1|WP_001182363.1|2182131_2183343_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP052877.1|WP_000269501.1|2183455_2184388_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP052877.1|WP_000190982.1|2184384_2185410_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP052877.1|WP_000102278.1|2185708_2185798_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP052877.1|WP_000701040.1|2185963_2187133_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP052877.1|WP_000007283.1|2187278_2187860_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP052877_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_6

2859479-2859570

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052877_6

>merge|NZ_CP052877|6|2859479-2859570|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP052877|6|5|2859479-2859570|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_001063132.1\|2865839_2868386_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP052877.1\|WP_001120112.1\|2869687_2870380_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP052877.1\|WP_001609822.1\|2853921_2855013_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP052877.1\|WP_001044265.1\|2860875_2862117_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP052877.1\|WP_000420617.1\|2863925_2864846_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP052877.1\|WP_000979516.1\|2848729_2848939_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052877.1\|WP_001151437.1\|2859993_2860590_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP052877.1\|WP_000024560.1\|2864845_2865151_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP052877.1\|WP_000535360.1\|2862405_2863665_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP052877.1\|WP_001028096.1\|2857521_2858016_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP052877.1\|WP_001230242.1\|2868385_2869558_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP052877.1\|WP_001331086.1\|2852995_2853634_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP052877.1\|WP_001297178.1\|2858036_2859365_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP052877.1\|WP_001387701.1\|2855012_2855705_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP052877.1\|WP_001001196.1\|2856920_2857511_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP052877.1\|WP_000777653.1\|2856110_2856911_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP052877.1\|WP_001143120.1\|2860610_2860838_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP052877.1\|WP_001126774.1\|2855716_2856103_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP052877.1\|WP_001385754.1\|2848993_2852956_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP052877.1\|WP_000209869.1\|2865243_2865843_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_001063132.1\|2865839_2868386_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP052877.1\|WP_001120112.1\|2869687_2870380_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP052877.1\|WP_001609822.1\|2853921_2855013_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP052877.1\|WP_001044265.1\|2860875_2862117_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP052877.1\|WP_000420617.1\|2863925_2864846_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP052877.1\|WP_001151437.1\|2859993_2860590_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP052877.1\|WP_000024560.1\|2864845_2865151_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP052877.1\|WP_000535360.1\|2862405_2863665_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP052877.1\|WP_001028096.1\|2857521_2858016_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.28716e-106
NZ_CP052877.1\|WP_001230242.1\|2868385_2869558_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP052877.1\|WP_001331086.1\|2852995_2853634_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	8.77004e-153
NZ_CP052877.1\|WP_001297178.1\|2858036_2859365_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP052877.1\|WP_001387701.1\|2855012_2855705_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	5.26211e-168
NZ_CP052877.1\|WP_001001196.1\|2856920_2857511_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.45614e-128
NZ_CP052877.1\|WP_000777653.1\|2856110_2856911_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	3.53291e-142
NZ_CP052877.1\|WP_001143120.1\|2860610_2860838_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP052877.1\|WP_001126774.1\|2855716_2856103_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	1.55572e-83
NZ_CP052877.1\|WP_001385754.1\|2848993_2852956_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP052877.1\|WP_000209869.1\|2865243_2865843_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	5.28244e-84

>NZ_CP052877.1|WP_001297178.1|2858036_2859365_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNLLGLGKAVDFTLVSHAAWFGLPHFSTPAFNSQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP
>NZ_CP052877.1|WP_001028096.1|2857521_2858016_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC
>NZ_CP052877.1|WP_001001196.1|2856920_2857511_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTVEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP052877.1|WP_000777653.1|2856110_2856911_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP052877.1|WP_001126774.1|2855716_2856103_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLATIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP052877.1|WP_001387701.1|2855012_2855705_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRNQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP052877.1|WP_001609822.1|2853921_2855013_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQSGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP052877.1|WP_001331086.1|2852995_2853634_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTKGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP052877.1|WP_001385754.1|2848993_2852956_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP052877.1|WP_000979516.1|2848729_2848939_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP052877.1|WP_001151437.1|2859993_2860590_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP052877.1|WP_001143120.1|2860610_2860838_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP052877.1|WP_001044265.1|2860875_2862117_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLIASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTRAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP052877.1|WP_000535360.1|2862405_2863665_-|YccE-family-protein
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSGGITYTIQYVQNVDVVRVSLPGRGSESITDFKGYYWYGFMEYIENITACDDVFSEYCFDDENMSIQPEQINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGGHKTQKQVYEEFIKIVDKQTIEALVDTAFNDLREDVKTLFGVNLQSDNKIQGQGGFLSWSFLSFKKEFIDSCLNDKKCILHLPEFIFNDNKVRLVLDTDPEQRVNEVKNFLTALSDSICSLFIVNSNMASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAIY
>NZ_CP052877.1|WP_000420617.1|2863925_2864846_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP052877.1|WP_000024560.1|2864845_2865151_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP052877.1|WP_000209869.1|2865243_2865843_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVVRCRQYDSFGFYAALSQLLLVLVESDHQNR
>NZ_CP052877.1|WP_001063132.1|2865839_2868386_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVTAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGAVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP052877.1|WP_001230242.1|2868385_2869558_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP052877.1|WP_001120112.1|2869687_2870380_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_CP052877_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_7

3165813-3165952

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052877_7

>merge|NZ_CP052877|7|3165813-3165952|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGAATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG

>NZ_CP052877|7|6|3165813-3165952|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	GATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGAATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_001036486.1\|3168424_3169858_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP052877.1\|WP_000679972.1\|3171169_3172123_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP052877.1\|WP_000604034.1\|3175193_3175883_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP052877.1\|WP_000213425.1\|3173313_3174132_+\|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase	unknown	unknown	gnl\|CDD\|182523
NZ_CP052877.1\|WP_000044868.1\|3158797_3159475_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP052877.1\|WP_000891515.1\|3176821_3176971_-\|multidrug-efflux-pump-accessory-protein-AcrZ	unknown	unknown	gnl\|CDD\|371231
NZ_CP052877.1\|WP_000723652.1\|3169933_3170986_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_CP052877.1\|WP_001091569.1\|3164463_3165747_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP052877.1\|WP_000951213.1\|3161360_3162401_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP052877.1\|WP_000767389.1\|3163835_3164312_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP052877.1\|WP_000246805.1\|3159467_3160223_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP052877.1\|WP_000042533.1\|3156197_3158219_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP052877.1\|WP_000118833.1\|3160209_3161364_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP052877.1\|WP_000891685.1\|3174132_3175191_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_CP052877.1\|WP_001295301.1\|3153711_3154701_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP052877.1\|WP_001295302.1\|3155097_3156006_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NZ_CP052877.1\|WP_000101997.1\|3175882_3176656_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP052877.1\|WP_000593936.1\|3165980_3168242_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
NZ_CP052877.1\|WP_001389241.1\|3162487_3163777_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP052877.1\|WP_000815435.1\|3172163_3173159_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_001036486.1\|3168424_3169858_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_CP052877.1\|WP_000679972.1\|3171169_3172123_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
NZ_CP052877.1\|WP_000604034.1\|3175193_3175883_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
NZ_CP052877.1\|WP_000213425.1\|3173313_3174132_+\|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
NZ_CP052877.1\|WP_000044868.1\|3158797_3159475_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	7.09172e-110
NZ_CP052877.1\|WP_000891515.1\|3176821_3176971_-\|multidrug-efflux-pump-accessory-protein-AcrZ	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
NZ_CP052877.1\|WP_000723652.1\|3169933_3170986_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_CP052877.1\|WP_001091569.1\|3164463_3165747_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP052877.1\|WP_000951213.1\|3161360_3162401_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP052877.1\|WP_000767389.1\|3163835_3164312_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118
NZ_CP052877.1\|WP_000246805.1\|3159467_3160223_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.57982e-172
NZ_CP052877.1\|WP_000042533.1\|3156197_3158219_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP052877.1\|WP_000118833.1\|3160209_3161364_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP052877.1\|WP_000891685.1\|3174132_3175191_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_CP052877.1\|WP_001295301.1\|3153711_3154701_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_CP052877.1\|WP_001295302.1\|3155097_3156006_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
NZ_CP052877.1\|WP_000101997.1\|3175882_3176656_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
NZ_CP052877.1\|WP_000593936.1\|3165980_3168242_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
NZ_CP052877.1\|WP_001389241.1\|3162487_3163777_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP052877.1\|WP_000815435.1\|3172163_3173159_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0

>NZ_CP052877.1|WP_001091569.1|3164463_3165747_+|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>NZ_CP052877.1|WP_000767389.1|3163835_3164312_+|kinase-inhibitor
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>NZ_CP052877.1|WP_001389241.1|3162487_3163777_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHTPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARNAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>NZ_CP052877.1|WP_000951213.1|3161360_3162401_-|biotin-synthase-BioB
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>NZ_CP052877.1|WP_000118833.1|3160209_3161364_-|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQLVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>NZ_CP052877.1|WP_000246805.1|3159467_3160223_-|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAIAAAFGRAAALYEQHADLQRQSADVLLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>NZ_CP052877.1|WP_000044868.1|3158797_3159475_-|ATP-dependent-dethiobiotin-synthetase-BioD
MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGSEKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>NZ_CP052877.1|WP_000042533.1|3156197_3158219_-|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP052877.1|WP_001295302.1|3155097_3156006_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>NZ_CP052877.1|WP_001295301.1|3153711_3154701_-|GTP-3',8-cyclase-MoaA
MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVKVNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLFGEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG
>NZ_CP052877.1|WP_000593936.1|3165980_3168242_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>NZ_CP052877.1|WP_001036486.1|3168424_3169858_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGSTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>NZ_CP052877.1|WP_000723652.1|3169933_3170986_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>NZ_CP052877.1|WP_000679972.1|3171169_3172123_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>NZ_CP052877.1|WP_000815435.1|3172163_3173159_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>NZ_CP052877.1|WP_000213425.1|3173313_3174132_+|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>NZ_CP052877.1|WP_000891685.1|3174132_3175191_-|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMAKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELVIKPGLWLYAQIKSVSITA
>NZ_CP052877.1|WP_000604034.1|3175193_3175883_-|molybdate-ABC-transporter-permease-subunit
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>NZ_CP052877.1|WP_000101997.1|3175882_3176656_-|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNTLADEGKITVFAAASLTNAMQDIATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKDFIIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK
>NZ_CP052877.1|WP_000891515.1|3176821_3176971_-|multidrug-efflux-pump-accessory-protein-AcrZ
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH

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Crispr_ID: NZ_CP052877_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_8

3408488-3408584

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052877_8

>merge|NZ_CP052877|8|3408488-3408584|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>NZ_CP052877|8|7|3408488-3408584|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_000706355.1\|3416827_3417973_-\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP052877.1\|WP_000855388.1\|3408627_3409521_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP052877.1\|WP_001301144.1\|3414667_3415903_+\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP052877.1\|WP_000540946.1\|3415913_3416699_+\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|225796
NZ_CP052877.1\|WP_000580856.1\|3411612_3413280_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP052877.1\|WP_000255997.1\|3405512_3406007_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP052877.1\|WP_000776555.1\|3401185_3401728_-\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP052877.1\|WP_000212253.1\|3406009_3406732_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP052877.1\|WP_001331011.1\|3409517_3410333_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP052877.1\|WP_000703909.1\|3413596_3414646_+\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP052877.1\|WP_000729154.1\|3402208_3403075_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP052877.1\|WP_000912345.1\|3403953_3405339_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP052877.1\|WP_000006887.1\|3419352_3420714_-\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP052877.1\|WP_001297442.1\|3417994_3419296_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP052877.1\|WP_001295318.1\|3406849_3407359_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP052877.1\|WP_001143552.1\|3403396_3403918_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP052877.1\|WP_000988379.1\|3400273_3400966_-\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP052877.1\|WP_000190288.1\|3403076_3403289_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP052877.1\|WP_000815510.1\|3407355_3408423_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP052877.1\|WP_073461547.1\|3410343_3411603_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_000706355.1\|3416827_3417973_-\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP052877.1\|WP_000855388.1\|3408627_3409521_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP052877.1\|WP_001301144.1\|3414667_3415903_+\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP052877.1\|WP_000540946.1\|3415913_3416699_+\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|225796	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only].	4.36926e-152
NZ_CP052877.1\|WP_000580856.1\|3411612_3413280_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP052877.1\|WP_000255997.1\|3405512_3406007_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP052877.1\|WP_000776555.1\|3401185_3401728_-\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
NZ_CP052877.1\|WP_000212253.1\|3406009_3406732_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.25513e-165
NZ_CP052877.1\|WP_001331011.1\|3409517_3410333_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.13102e-37
NZ_CP052877.1\|WP_000703909.1\|3413596_3414646_+\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP052877.1\|WP_000729154.1\|3402208_3403075_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP052877.1\|WP_000912345.1\|3403953_3405339_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP052877.1\|WP_000006887.1\|3419352_3420714_-\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP052877.1\|WP_001297442.1\|3417994_3419296_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP052877.1\|WP_001295318.1\|3406849_3407359_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP052877.1\|WP_001143552.1\|3403396_3403918_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.06651e-30
NZ_CP052877.1\|WP_000988379.1\|3400273_3400966_-\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	5.99265e-148
NZ_CP052877.1\|WP_000190288.1\|3403076_3403289_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP052877.1\|WP_000815510.1\|3407355_3408423_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.42693e-179
NZ_CP052877.1\|WP_073461547.1\|3410343_3411603_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.22899e-131

>NZ_CP052877.1|WP_000815510.1|3407355_3408423_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQNVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFERLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNSPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP052877.1|WP_001295318.1|3406849_3407359_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP052877.1|WP_000212253.1|3406009_3406732_+|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP052877.1|WP_000255997.1|3405512_3406007_+|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP052877.1|WP_000912345.1|3403953_3405339_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP052877.1|WP_001143552.1|3403396_3403918_+|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>NZ_CP052877.1|WP_000190288.1|3403076_3403289_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP052877.1|WP_000729154.1|3402208_3403075_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP052877.1|WP_000776555.1|3401185_3401728_-|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP052877.1|WP_000988379.1|3400273_3400966_-|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASTHAAGGIALGATRIIYPADAQQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>NZ_CP052877.1|WP_000855388.1|3408627_3409521_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP052877.1|WP_001331011.1|3409517_3410333_-|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP052877.1|WP_073461547.1|3410343_3411603_-|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNQGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAMLEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLRAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP052877.1|WP_000580856.1|3411612_3413280_-|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLSDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAATPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDSQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSSATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP052877.1|WP_000703909.1|3413596_3414646_+|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGLIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFFSSKLFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP052877.1|WP_001301144.1|3414667_3415903_+|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLSGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP052877.1|WP_000540946.1|3415913_3416699_+|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYRDDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP052877.1|WP_000706355.1|3416827_3417973_-|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLVANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP052877.1|WP_001297442.1|3417994_3419296_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTVLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP052877.1|WP_000006887.1|3419352_3420714_-|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ

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Crispr_ID: NZ_CP052877_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052877_9

3713348-3713441

Orphan

Consensus_repeat	Method
GGGGACTGATTTGTGCGCGTTGTTACATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052877_9

>merge|NZ_CP052877|9|3713348-3713441|CRISPRCasFinder
GGGGACTGATTTGTGCGCGTTGTTACATCGCGCACCGCTTTTCTCCCTCTCCCCAAAGGAGCCTGGGGACTGATCTGTGCGCGTTGTTACATCG

>NZ_CP052877|9|8|3713348-3713441|CRISPRCasFinder
GGGGACTGATTTGTGCGCGTTGTTACATCG	CGCACCGCTTTTCTCCCTCTCCCCAAAGGAGCCT
GGGGACTGATCTGTGCGCGTTGTTACATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052877.1\|WP_001093687.1\|3716504_3717218_-\|flagellar-hook-capping-protein	unknown	unknown	gnl\|CDD\|181996
NZ_CP052877.1\|WP_000010949.1\|3717217_3717649_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|180702
NZ_CP052877.1\|WP_000867179.1\|3711165_3711465_-\|rod-binding-protein	unknown	unknown	gnl\|CDD\|139168
NZ_CP052877.1\|WP_032296869.1\|3714480_3715218_-\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP052877.1\|WP_000367229.1\|3709600_3710977_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|180871
NZ_CP052877.1\|WP_000119527.1\|3715217_3716420_-\|flagellar-basal-body-protein-FlgE	unknown	unknown	gnl\|CDD\|235862
NZ_CP052877.1\|WP_001181878.1\|3711464_3712565_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP052877.1\|WP_000027811.1\|3719177_3719606_+\|flagellar-protein-FlgN	unknown	unknown	gnl\|CDD\|377465
NZ_CP052877.1\|WP_000009752.1\|3718068_3718806_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|235863
NZ_CP052877.1\|WP_001195944.1\|3707662_3708640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052877.1\|WP_032296870.1\|3706765_3707608_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP052877.1\|WP_000800868.1\|3712579_3713245_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|183507
NZ_CP052877.1\|WP_000512952.1\|3717651_3717987_-\|flagellar-biosynthesis-protein-FlgB	unknown	unknown	gnl\|CDD\|183682
NZ_CP052877.1\|WP_000609679.1\|3703842_3705159_-\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|236141
NZ_CP052877.1\|WP_000949083.1\|3705365_3706280_-\|lateral-flagellin-LafA	unknown	unknown	gnl\|CDD\|380229
NZ_CP052877.1\|WP_000990540.1\|3713516_3714302_-\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP052877.1\|WP_000285319.1\|3703427_3703820_-\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|376819
NZ_CP052877.1\|WP_000705401.1\|3718886_3719165_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP052877.1\|WP_000008066.1\|3719732_3720662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052877.1\|WP_001266808.1\|3708656_3709586_-\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|235956

Protein	Function_ID	Function_description	E-value
NZ_CP052877.1\|WP_001093687.1\|3716504_3717218_-\|flagellar-hook-capping-protein	gnl\|CDD\|181996	PRK09619, flgD, flagellar hook assembly protein FlgD.	3.89862e-60
NZ_CP052877.1\|WP_000010949.1\|3717217_3717649_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|180702	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed.	1.22302e-83
NZ_CP052877.1\|WP_000867179.1\|3711165_3711465_-\|rod-binding-protein	gnl\|CDD\|139168	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed.	7.76803e-23
NZ_CP052877.1\|WP_000285319.1\|3703427_3703820_-\|flagellar-export-chaperone-FliS	gnl\|CDD\|376819	pfam02561, FliS, Flagellar protein FliS. FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.	1.6531e-37
NZ_CP052877.1\|WP_000367229.1\|3709600_3710977_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|180871	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated.	2.8332e-152
NZ_CP052877.1\|WP_000119527.1\|3715217_3716420_-\|flagellar-basal-body-protein-FlgE	gnl\|CDD\|235862	PRK06803, flgE, flagellar basal body protein FlaE.	5.62437e-163
NZ_CP052877.1\|WP_001181878.1\|3711464_3712565_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP052877.1\|WP_000027811.1\|3719177_3719606_+\|flagellar-protein-FlgN	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	1.52237e-11
NZ_CP052877.1\|WP_000009752.1\|3718068_3718806_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|235863	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA.	1.93843e-57
NZ_CP052877.1\|WP_000705401.1\|3718886_3719165_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	4.49385e-09
NZ_CP052877.1\|WP_032296870.1\|3706765_3707608_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	2.49051e-18
NZ_CP052877.1\|WP_000800868.1\|3712579_3713245_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|183507	PRK12407, flgH, flagellar basal body L-ring protein FlgH.	4.51802e-161
NZ_CP052877.1\|WP_000512952.1\|3717651_3717987_-\|flagellar-biosynthesis-protein-FlgB	gnl\|CDD\|183682	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed.	1.90374e-48
NZ_CP052877.1\|WP_000609679.1\|3703842_3705159_-\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|236141	PRK08032, fliD, flagellar capping protein; Reviewed.	6.25329e-38
NZ_CP052877.1\|WP_000949083.1\|3705365_3706280_-\|lateral-flagellin-LafA	gnl\|CDD\|380229	NF033376, flg_lateral_LafA, lateral flagellin LafA. This HMM describes rare second type of flagellin from E. coli and some closely related species, called LafA, where the familiar and common flagellin, FliC, is nearly universal and carries the H-antigen used for serotyping strains. In contrast to FliC, whose center region is highly variable, LafA shows little variability in sequence. In many E. coli strains, the Flag-2 locus either is absent or is cryptic, appearing degraded and non-functional.	1.60894e-115
NZ_CP052877.1\|WP_000990540.1\|3713516_3714302_-\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	9.70839e-141
NZ_CP052877.1\|WP_032296869.1\|3714480_3715218_-\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	2.96472e-117
NZ_CP052877.1\|WP_001266808.1\|3708656_3709586_-\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|235956	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed.	4.34657e-80

>NZ_CP052877.1|WP_000800868.1|3712579_3713245_-|flagellar-basal-body-L-ring-protein-FlgH
MKNYLWLVALLPLLSGCESQAILVKKDDAYFAPPKTEAPPPADGRAGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNTVDIGAPTIFGHTKDKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPLFPI
>NZ_CP052877.1|WP_001181878.1|3711464_3712565_-|flagellar-basal-body-P-ring-protein-FlgI
MQNWIKAAAIAVSLALPGVVLAQSLESLVNVQGVRENQLVGYSLVVGLDGTGDKNQVKFTNQTITNMLRQFGVQLPNKIDPKVKNVAAVAVSATLPPMYSRGQTIDVTVSSIGDAKSIRGGTLLLTQLHGADGEVYALAQGSVVVGGMNATGASGSSVTVNTPTAGLIPNGATVEREIPSDFQMGDTITLNLKRPSFKDANNIAAAINASFGGIATAQSSTNVTVRAPTSPGARVAFMSQLDDVQVQAEKIRARVVFNSRTGTVVMGDGVALHAAAVSHGSLTVSINETSNVSQPNAFAGGRTAVTPQSNIAVNHARPGVVSLPESSSLKTLVNALNSLGATPDDIMSILQALHEAGALDADLEVI
>NZ_CP052877.1|WP_000867179.1|3711165_3711465_-|rod-binding-protein
MKVNASGGIDGSDALMGPKVQANDIKQAAEQFEAIFLRNMLKEMRKTNELFDSKDNPFNSDSVRMMQGFYDDELCNTLAQQHGIGIAAMIVKQLSPKHK
>NZ_CP052877.1|WP_000367229.1|3709600_3710977_-|flagellar-hook-associated-protein-FlgK
MDMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDSIRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDDNSSLSGGFDNFFAALNEATTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYNQQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSSTIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMASQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSPDESGNSDNLQALINISTEPLEIANLGSVTVGQACSSIISNIGIYSQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDSVLEMCS
>NZ_CP052877.1|WP_001266808.1|3708656_3709586_-|flagellar-hook-associated-protein-FlgL
MRVTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQYQSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMVAALNYQDEDGHYVFGGTINDQPPIVAVDNDGDGVTDSYSYQGNSDHRQTTVSNGVEVDTNVAASDFFGSNLDVLNTLNSLSQELQDPNADPADPQVQSDIQNAVDVVDTASDDLNASIASLGETQNTMSMLSDAQTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNLFSVL
>NZ_CP052877.1|WP_001195944.1|3707662_3708640_-|hypothetical-protein
MQVGLTSSSLATGGAHSAAVSSSTVAPTQAVRQKLPATASEYPASPLITTRPQRYSVQLNDQLTTLQQADHYLGQLEQQLLDYRHSQRKGGQAQSTALMQMLDKRTALSGGAVDRQLQPVLQGEARVSFHSPELANLVHNPTPGTCMFSVSDGRQTQLSAVMLSEDDSAGQYQTRLTNALRRVGVQLHQQADGISFSTTEKQWPHIERTLSVRTDGDKSAFMPLKTFAEPSEADRLAQSLQQGGAGISQTLESINQQRAQMAVQQEKARQLIDGMSRFPQTENAVQASENLGGVLDSANHNYQVLLQAVNGQARISSQTVRNLLG
>NZ_CP052877.1|WP_032296870.1|3706765_3707608_+|winged-helix-turn-helix-domain-containing-protein
MSIIINNWRMDPSLNALIHCETGETRRLGEYHFILLETLAKNADVVLSRSYLCAEVWKNRIVGGNSLPTAIHALRVAIDDDGKQQNIIKTIPKKGYLCNKEYVSLPDSSPAKKLIITDQIQETVPEEISSTTPPVPVRKKHKVIMGLALAAAVIFIGSTVGYSHLKSTPDAPQLVKESINSPRIKIFHLSSGKENNPVPLLSQTLAPGKDKLDNLLSAHNMTMTTYYKYVRNRLESDIVLRNQCNGSWQLTFNVEGWQNSDINSAMYQNLEKLLNTLQKC
>NZ_CP052877.1|WP_000949083.1|3705365_3706280_-|lateral-flagellin-LafA
MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVGAESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ
>NZ_CP052877.1|WP_000609679.1|3703842_3705159_-|flagellar-filament-capping-protein-FliD
MINPRTIAQEIAYADVATQAANLQEKQTELDAESSGLDSLSSALSDFQSAVDALNSDTDGPVTFAATSNNDSATVSANSQAQAGSYSFFVEQLAQGQQTTFSMGDDAFSATGTFELTMGDSTMDIDLSAADQNGDGDGFIDASELVNAINDSDDNPGVSAALVKTDGTTTIMLTSDSTGAQSAFSVSVTGHDTSNDSASAPVATDVSSAQDAIIHLGSATGPAITNSSNTFDDVIPGVTMTFTEVSDSDSDLTTFNISEDSSASQEKVQTFVDAYNTLIDMVDSLTTHGDDSTSAGVFAGDAGLSSLANQLDDIAHASYNGVSIVDYGITLDSHGHLQIDSDQFNDEMAKNPDGLTSIFVGDNSMVAQMDDLINTYTDSSNGIITLRQQNIDDQMSKIQDEGDQLTDTYNANYDRYLEEYTNTLVEVYTMKASMAAFA
>NZ_CP052877.1|WP_000285319.1|3703427_3703820_-|flagellar-export-chaperone-FliS
MYQVQDGYSQYKEIDLAARTAAASPLELVLVLFSGLMDELERAKSHIEGRRFEKKAQSINKCIDILNALTSSLEFETGGELVVNLSRLYDHCVYRLYEASGELSAEKIDEVMLILSNLREGWEGLSGKLG
>NZ_CP052877.1|WP_000990540.1|3713516_3714302_-|flagellar-basal-body-rod-protein-FlgG
MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQYISQTL
>NZ_CP052877.1|WP_032296869.1|3714480_3715218_-|flagellar-basal-body-rod-protein-FlgF
MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRYMAQEGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLTIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNAEGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGNRLLRGS
>NZ_CP052877.1|WP_000119527.1|3715217_3716420_-|flagellar-basal-body-protein-FlgE
MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKVYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM
>NZ_CP052877.1|WP_001093687.1|3716504_3717218_-|flagellar-hook-capping-protein
MNTLALNAQSPQPTATQESSNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNLVGDDIMVQTTALQVSGQTINGRATLDDACTTADLHFTDAAGDDYTVSLIPQGSSSVGPGQVDFSVNPADYGIPPGDYDVSVVTNTGEEEVPIEVSGEVEDVRIPLDGSSPVLNVAGVGEVPFTMISQFGVPDADSDVA
>NZ_CP052877.1|WP_000010949.1|3717217_3717649_-|flagellar-basal-body-rod-protein-FlgC
MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPASSEAQAYKARSPVFAAVYHHSLLAGTHRHAIDGASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDFETNVDVLNNVKSMQQSLLKLGEA
>NZ_CP052877.1|WP_000512952.1|3717651_3717987_-|flagellar-biosynthesis-protein-FlgB
MGISFQQALGVHPQAVKLRLERTELLTANLANVDTPNFKAKDIDFAREMQRANNAVVDVQYRVPMQPSEDGNTVELNSEQARFSQNSMDYQSSLTFLNLQISGIREAIEGK
>NZ_CP052877.1|WP_000009752.1|3718068_3718806_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MSFQFCRRKFYFLLALALPGYAAVHPVQHSAREQVNAQVLNAASQKIESLAQQRQWHDYRYTFKIYIPSQIATAAPCTKTPGVTLTSPAEIALNRMNFTVSCPQSWQMNVAVRPDVLVPVVMTKSLVARDTPLTANDVELKPYNVSAQRRDVLMVLDDAIGFSSKHALQPGRPITKEELVSPVLVGRDQPVMIVYQSAGISASMPGVALKNGRKGEMVKVRNASSQRVISAMVAESGVVTTVSAE
>NZ_CP052877.1|WP_000705401.1|3718886_3719165_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MKITPTMPGNRPTATTAGSSQPRKTTATTTTTLSADDITQAGLQSAQQTLNDQQESDIDSDKVAQMQAMLASGSLQVDTEQLASDMLSFFQN
>NZ_CP052877.1|WP_000027811.1|3719177_3719606_+|flagellar-protein-FlgN
MSIRLQQVKALLQGIRDDDALYDSLRERLQRQRICMIRRASEELLAVNEEITHHYEQLHGHSHQRHSLLKMLGVSVNRDGLAQVFAWLPAVQKAAAQQLWQRLEQKAERCKAYNDKNGELLIRQYEFIQSFLGSEADFLYQE
>NZ_CP052877.1|WP_000008066.1|3719732_3720662_+|hypothetical-protein
MSFIECYEPEYVRKFLARHPGSPLYVRKVWKNEIRLSLSLTDIASCEAVLNDVRAFDLQLTYRPVEDNSAELSARDAIVNQVILSTLTLRDLTPELSLYAVGILLSRASKMPGRDGDILARLTTLPLALADHAKKGTLQAQYAQLPPVPQLARQLMTLLGGCAFDWSILPESPRKASLPLQVTLLTLHDANSEALLQQQLQTQWQTTWQQHFATAPWMMRNWLIYRVYHDVIGQTDGADYFPLVCDFYLLRTLISLWTLDGSPLRQEDIFALFAMFERWRASENALLVRQQIQSLCAADPLLSAFSLLT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP052877_6	6.1\|2859505\|40\|NZ_CP052877\|CRISPRCasFinder	2859505-2859544	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP052877_9	9.1\|3713378\|34\|NZ_CP052877\|CRISPRCasFinder	3713378-3713411	34	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	9856-9889	0	1.0
NZ_CP052877_5	5.1\|2176732\|38\|NZ_CP052877\|CRISPRCasFinder	2176732-2176769	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP052877_3	3.1\|1039328\|32\|NZ_CP052877\|PILER-CR,CRISPRCasFinder,CRT	1039328-1039359	32	AP014063	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C13-MedDCM-OCT-S32-C51, * SEQUENCING IN PROGRESS *	11148-11179	6	0.812
NZ_CP052877_2	2.9\|1013327\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013327-1013358	32	KR080197	Mycobacterium phage FlagStaff, complete genome	15476-15507	7	0.781
NZ_CP052877_2	2.4\|1013022\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013022-1013053	32	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	472466-472497	8	0.75
NZ_CP052877_2	2.5\|1013083\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013083-1013114	32	NC_049830	Escherichia phage PGN590, complete genome	44012-44043	8	0.75
NZ_CP052877_2	2.5\|1013083\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013083-1013114	32	NC_049825	Escherichia phage grams, complete genome	16276-16307	8	0.75
NZ_CP052877_2	2.8\|1013266\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013266-1013297	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
NZ_CP052877_2	2.9\|1013327\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013327-1013358	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15449	8	0.75
NZ_CP052877_9	9.1\|3713378\|34\|NZ_CP052877\|CRISPRCasFinder	3713378-3713411	34	NZ_CP010866	Marinovum algicola DG 898 plasmid pMaD11, complete sequence	5770-5803	8	0.765
NZ_CP052877_2	2.1\|1012839\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1012839-1012870	32	NZ_CP034939	Pectobacterium odoriferum strain JK2.1 plasmid p.Jk2_1, complete sequence	17839-17870	9	0.719
NZ_CP052877_2	2.4\|1013022\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013022-1013053	32	MH576962	Streptomyces phage Satis, complete genome	157162-157193	9	0.719
NZ_CP052877_2	2.4\|1013022\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013022-1013053	32	MK620894	Streptomyces phage Kradal, complete genome	156825-156856	9	0.719
NZ_CP052877_2	2.5\|1013083\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013083-1013114	32	LR606150	Rhizobium sp. Q54 genome assembly, plasmid: 7	59128-59159	9	0.719
NZ_CP052877_2	2.5\|1013083\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013083-1013114	32	NC_048097	Arthrobacter phage Yang, complete genome	6482-6513	9	0.719
NZ_CP052877_2	2.5\|1013083\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013083-1013114	32	NC_029046	Sinorhizobium phage phiLM21, complete genome	6616-6647	9	0.719
NZ_CP052877_2	2.6\|1013144\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013144-1013175	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224876-224907	9	0.719
NZ_CP052877_2	2.9\|1013327\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013327-1013358	32	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139210-139241	9	0.719
NZ_CP052877_3	3.1\|1039328\|32\|NZ_CP052877\|PILER-CR,CRISPRCasFinder,CRT	1039328-1039359	32	NZ_CP009572	Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence	30722-30753	9	0.719
NZ_CP052877_2	2.4\|1013022\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013022-1013053	32	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	170065-170096	10	0.688
NZ_CP052877_2	2.4\|1013022\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013022-1013053	32	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	167359-167390	10	0.688
NZ_CP052877_2	2.4\|1013022\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013022-1013053	32	NZ_CP015006	Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence	139933-139964	10	0.688
NZ_CP052877_2	2.9\|1013327\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1013327-1013358	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	14130-14161	10	0.688
NZ_CP052877_2	2.18\|1013326\|35\|NZ_CP052877\|PILER-CR	1013326-1013360	35	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139208-139242	11	0.686
NZ_CP052877_3	3.5\|1039573\|32\|NZ_CP052877\|CRISPRCasFinder,CRT	1039573-1039604	32	GU071094	Synechococcus phage S-SM1, complete genome	141567-141598	11	0.656

1. spacer 6.1|2859505|40|NZ_CP052877|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 9.1|3713378|34|NZ_CP052877|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 0, identity: 1.0

cgcaccgcttttctccctctccccaaaggagcct	CRISPR spacer
cgcaccgcttttctccctctccccaaaggagcct	Protospacer
**********************************

3. spacer 5.1|2176732|38|NZ_CP052877|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 3.1|1039328|32|NZ_CP052877|PILER-CR,CRISPRCasFinder,CRT matches to AP014063 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C13-MedDCM-OCT-S32-C51, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.812

gcattcttgccgccattcagcgacgtaatcaa	CRISPR spacer
gcctcagtgccgccattcagcaacgtaatcag	Protospacer
** *.  **************.*********.

5. spacer 2.9|1013327|32|NZ_CP052877|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gacgccggcgccgcgatgccgttcgccgggtt	Protospacer
******* ******** ******. * . ***

6. spacer 2.4|1013022|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 8, identity: 0.75

aagttatgccgggccgtccggtgccgaactcc	CRISPR spacer
tgaacatgccgggccggccggtgccgaagccc	Protospacer
 .. .*********** *********** .**

7. spacer 2.5|1013083|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NC_049830 (Escherichia phage PGN590, complete genome) position: , mismatch: 8, identity: 0.75

aacaggcagagcgcgacgctcagaaatgaaaa	CRISPR spacer
ttgaggcagagcgcgacgccctgaaaactaaa	Protospacer
   ****************.* ****   ***

8. spacer 2.5|1013083|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NC_049825 (Escherichia phage grams, complete genome) position: , mismatch: 8, identity: 0.75

aacaggcagagcgcgacgctcagaaatgaaaa	CRISPR spacer
ttgaggcagagcgcgacgccctgaaaactaaa	Protospacer
   ****************.* ****   ***

9. spacer 2.8|1013266|32|NZ_CP052877|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

10. spacer 2.9|1013327|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gtcgccgccgccgcgcagccctttccacagcc	Protospacer
* ************* **** *****.  *..

11. spacer 9.1|3713378|34|NZ_CP052877|CRISPRCasFinder matches to NZ_CP010866 (Marinovum algicola DG 898 plasmid pMaD11, complete sequence) position: , mismatch: 8, identity: 0.765

cgca-ccgcttttctccctctccccaaaggagcct	CRISPR spacer
-gcacccgcttttctccctcgccacaaagccggac	Protospacer
 *** *************** ** *****  *  .

12. spacer 2.1|1012839|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NZ_CP034939 (Pectobacterium odoriferum strain JK2.1 plasmid p.Jk2_1, complete sequence) position: , mismatch: 9, identity: 0.719

gaatagcatgaatgacgcgctagagcgggctt	CRISPR spacer
tgaaagcatgaatgacgcgataaagcgccgta	Protospacer
 .* *************** **.****   *

13. spacer 2.4|1013022|32|NZ_CP052877|CRISPRCasFinder,CRT matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 9, identity: 0.719

--aagttatgccgggccgtccggtgccgaactcc	CRISPR spacer
cctggt--tgccgggcagtccggtgctgaacgga	Protospacer
   .**  ******** *********.****

14. spacer 2.4|1013022|32|NZ_CP052877|CRISPRCasFinder,CRT matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 9, identity: 0.719

--aagttatgccgggccgtccggtgccgaactcc	CRISPR spacer
cctggt--tgccgggcagtccggtgctgaacgga	Protospacer
   .**  ******** *********.****

15. spacer 2.5|1013083|32|NZ_CP052877|CRISPRCasFinder,CRT matches to LR606150 (Rhizobium sp. Q54 genome assembly, plasmid: 7) position: , mismatch: 9, identity: 0.719

aacaggcagagcgcgacgctcagaaatgaaaa	CRISPR spacer
gtctggtagagcgcgacgctcaggaatagcac	Protospacer
. * **.****************.***.. *

16. spacer 2.5|1013083|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NC_048097 (Arthrobacter phage Yang, complete genome) position: , mismatch: 9, identity: 0.719

aacaggcagagcgcgacgctcagaaatgaaaa	CRISPR spacer
taaaggccgagcgcgacgctctgaaagtcgag	Protospacer
 * **** ************* ****   .*.

17. spacer 2.5|1013083|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NC_029046 (Sinorhizobium phage phiLM21, complete genome) position: , mismatch: 9, identity: 0.719

aacaggcagagcgcgacgctcagaaatgaaaa	CRISPR spacer
aacaggccgaacgcgacgctcaggctcgcatc	Protospacer
******* **.************.  .* *

18. spacer 2.6|1013144|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taaggccgtcgccggatcagcctggctatgcc	CRISPR spacer
cggggccgtcgccggatcagccggtctgctgc	Protospacer
...******************* * **..  *

19. spacer 2.9|1013327|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gaagccgccgccgcgaacccgtttttcccggg	Protospacer
** ************** ******..  .*

20. spacer 3.1|1039328|32|NZ_CP052877|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 9, identity: 0.719

gcattcttgccgccattcagcgacgtaatcaa	CRISPR spacer
gcattcaggccgccattcagcgatgatagtgt	Protospacer
******  ***************.*  * ..

21. spacer 2.4|1013022|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 10, identity: 0.688

aagttatgccgggccgtccggtgccgaactcc	CRISPR spacer
ccctgatcccgggccgtccggcgccgaagctg	Protospacer
   * ** *************.****** ..

22. spacer 2.4|1013022|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 10, identity: 0.688

aagttatgccgggccgtccggtgccgaactcc	CRISPR spacer
ccctgatcccgggccgtccggcgccgaagctg	Protospacer
   * ** *************.****** ..

23. spacer 2.4|1013022|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NZ_CP015006 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence) position: , mismatch: 10, identity: 0.688

aagttatgccgggccgtccggtgccgaactcc	CRISPR spacer
ccctcatcccgggccgtccggcgccgaagctg	Protospacer
   *.** *************.****** ..

24. spacer 2.9|1013327|32|NZ_CP052877|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
ttgcccgccgcggcgaagccgcttccgtcctc	Protospacer
    ******* *********.***** . *.

25. spacer 2.18|1013326|35|NZ_CP052877|PILER-CR matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 11, identity: 0.686

ggacgccgccgccgcgaagccgtttccgatgttga	CRISPR spacer
ggaagccgccgccgcgaacccgtttttcccgggcc	Protospacer
*** ************** ******..  .*

26. spacer 3.5|1039573|32|NZ_CP052877|CRISPRCasFinder,CRT matches to GU071094 (Synechococcus phage S-SM1, complete genome) position: , mismatch: 11, identity: 0.656

atgagaacggcaccagttatctgattgtaaat	CRISPR spacer
atgagaacgtcatcagttatctggcaacgttc	Protospacer
********* **.**********.. ...  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

688504 : 696056

Escherichia_phage(100.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169711480.1\|688504_689485_+\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	9.2e-182	98.2
WP_061424402.1\|689838_692274_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	0.0e+00	100.0
WP_000816147.1\|692287_692914_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.9e-128	100.0
WP_000544912.1\|692906_693683_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	5.8e-131	100.0
WP_001139856.1\|693737_694334_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.7e-114	100.0
WP_001327048.1\|694330_694861_+	4Fe-4S dicluster domain-containing protein	A0A077SLP0	Escherichia_phage	8.6e-102	100.0
WP_066019098.1\|695075_696056_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	5.2e-185	99.1

DBSCAN-SWA_2

1095496 : 1211874

119

Salmonella_phage(63.33%)

integrase,capsid,head,terminase,tail,lysis,plate,transposase,tRNA,portal

attL 1136979:1137023|attR 1173379:1173423

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000047176.1\|1095496_1098127_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	5.5e-80	38.6
WP_000906486.1\|1098361_1098547_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_000273309.1\|1100139_1100706_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_001287454.1\|1100702_1101131_+	DedA family protein	NA	NA	NA	NA
WP_000611804.1\|1101203_1102760_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_001130210.1\|1102909_1103425_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_001295176.1\|1103488_1105027_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001295175.1\|1105043_1106216_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_073461731.1\|1106342_1106873_-	multidrug efflux transporter EmrAB transcriptional repressor EmrR	NA	NA	NA	NA
WP_048265082.1\|1106843_1106945_+	hypothetical protein	NA	NA	NA	NA
WP_000119763.1\|1106963_1107299_-	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_000445658.1\|1107288_1108026_-	L-valine exporter subunit YgaZ	NA	NA	NA	NA
WP_000165699.1\|1108149_1109334_-	MFS transporter	NA	NA	NA	NA
WP_001216527.1\|1109625_1110618_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000774996.1\|1110674_1111739_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_000985494.1\|1111731_1112934_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.9e-28	39.4
WP_000777969.1\|1113288_1114248_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.5e-133	71.8
WP_073461730.1\|1114257_1116402_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.5e-194	48.0
WP_000080947.1\|1116374_1116785_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	4.6e-18	44.4
WP_001223227.1\|1116781_1117027_-	glutaredoxin-like protein NrdH	Q5K5J3	Oenococcus_phage	1.8e-06	35.3
WP_073461729.1\|1117274_1117604_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000281320.1\|1117755_1118100_+	YgaC family protein	NA	NA	NA	NA
WP_000492656.1\|1118136_1118586_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_000115383.1\|1119253_1119658_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_001229467.1\|1119704_1120229_-	thiosulfate sulfurtransferase YgaP	NA	NA	NA	NA
WP_000137280.1\|1120238_1120538_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000508177.1\|1120720_1120879_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000522424.1\|1120962_1121412_+	potassium binding protein Kbp	A0A090DBR9	Clostridium_phage	2.0e-06	39.5
WP_000156811.1\|1121412_1122075_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_001295173.1\|1122095_1123496_-	GABA permease	NA	NA	NA	NA
WP_000097662.1\|1123733_1125014_-	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	1.4e-33	30.1
WP_000772876.1\|1125027_1126476_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000271948.1\|1126498_1127767_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_001330895.1\|1127786_1128764_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_087530468.1\|1130272_1131434_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.4e-51	40.6
WP_000577254.1\|1131586_1133305_+	ATP-binding protein	A0A1B5FPD5	Escherichia_phage	3.2e-307	99.8
WP_000448925.1\|1135128_1135545_-	hypothetical protein	A0A1B5FPM5	Escherichia_phage	1.1e-72	100.0
WP_001341819.1\|1135583_1136813_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.5e-234	100.0
1136979:1137023	attL	NA	NA	NA	NA
WP_001083625.1\|1137108_1137777_-	hypothetical protein	NA	NA	NA	NA
WP_000155494.1\|1137787_1138804_-\|integrase	site-specific integrase	E5G6L0	Salmonella_phage	8.0e-189	94.1
WP_000052557.1\|1138807_1139440_-	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	5.0e-64	57.1
WP_000102105.1\|1139556_1139799_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.8e-38	97.5
WP_000460856.1\|1139831_1140341_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-83	95.3
WP_000956192.1\|1140348_1140645_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.9e-21	88.5
WP_073461711.1\|1140762_1141104_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	5.1e-55	97.3
WP_001244216.1\|1141171_1141405_+	DUF2732 family protein	E5G6L6	Salmonella_phage	9.2e-32	96.1
WP_000752613.1\|1141404_1141632_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_052935163.1\|1141628_1142486_+	DNA adenine methylase	E5G6L8	Salmonella_phage	1.4e-162	97.9
WP_073461710.1\|1142482_1144897_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.4
WP_001154434.1\|1145049_1145238_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001217583.1\|1145248_1145482_+	DinI family protein	E5G6M1	Salmonella_phage	6.1e-36	98.7
WP_073461709.1\|1145740_1146400_-	hypothetical protein	NA	NA	NA	NA
WP_124842052.1\|1146404_1146878_-	hypothetical protein	NA	NA	NA	NA
WP_073461745.1\|1147339_1148335_+	hypothetical protein	A0A1S6KZY1	Salmonella_phage	6.0e-181	90.9
WP_077625619.1\|1148391_1148904_-	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	2.0e-79	86.5
WP_139289628.1\|1149065_1149365_-	hypothetical protein	A0A1S6KZY3	Salmonella_phage	1.8e-35	86.0
WP_077625620.1\|1149422_1150451_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	4.9e-178	91.3
WP_073461747.1\|1150450_1152217_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000216247.1\|1152359_1153193_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.1e-122	90.6
WP_000742511.1\|1153209_1154268_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.9e-181	93.4
WP_000059191.1\|1154271_1154922_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_077625621.1\|1155017_1155482_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	9.3e-76	88.3
WP_000868175.1\|1155481_1155685_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000171568.1\|1155688_1155904_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_073461749.1\|1155884_1156400_+	lysozyme	E5G6N1	Salmonella_phage	6.9e-88	90.6
WP_073461750.1\|1156396_1156825_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.1e-58	88.7
WP_114142375.1\|1156920_1157352_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	6.4e-71	92.3
WP_073461752.1\|1157344_1157791_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.1e-54	79.1
WP_073461753.1\|1157866_1159642_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_049091890.1\|1159920_1160499_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	8.0e-93	85.9
WP_049091891.1\|1160495_1160855_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	2.8e-51	85.7
WP_049091892.1\|1160841_1161750_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.9e-141	89.7
WP_073461754.1\|1161742_1162348_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.5e-110	92.0
WP_000064420.1\|1164082_1164349_+\|tail	phage tail protein	NA	NA	NA	NA
WP_001236016.1\|1164317_1164515_-	hypothetical protein	NA	NA	NA	NA
WP_001439518.1\|1164501_1164882_-	hypothetical protein	I3PGW0	Xanthomonas_phage	5.8e-07	30.6
WP_000905039.1\|1164912_1165479_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
WP_069916669.1\|1165621_1166794_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.6e-204	90.8
WP_001207656.1\|1166803_1167319_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_001281009.1\|1167373_1167676_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_000763311.1\|1167690_1167810_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_073461704.1\|1167802_1170880_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	67.7
WP_001710138.1\|1170876_1171362_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.1e-66	80.6
WP_073461703.1\|1171358_1172459_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.5e-177	88.8
WP_000980501.1\|1172527_1172746_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-28	77.8
WP_000391794.1\|1172772_1173255_-	hypothetical protein	Q19UP0	Mannheimia_phage	1.6e-17	34.3
WP_000162574.1\|1173955_1174438_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
1173379:1173423	attR	NA	NA	NA	NA
WP_000600190.1\|1174569_1175046_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_001117838.1\|1175035_1175326_+	RnfH family protein	NA	NA	NA	NA
WP_001203437.1\|1175387_1175729_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880910.1\|1175877_1177539_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059169.1\|1177624_1178503_-	NAD(+) kinase	NA	NA	NA	NA
WP_001296310.1\|1178625_1179219_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_010723175.1\|1179273_1180560_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001338897.1\|1180580_1181372_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460035.1\|1181538_1182900_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256450.1\|1183148_1183397_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043335.1\|1183415_1183964_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000264777.1\|1183994_1184762_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065253.1\|1184803_1185151_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_000589828.1\|1185227_1185710_-	OmpA family protein	NA	NA	NA	NA
WP_000969042.1\|1185725_1186952_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_001212391.1\|1186941_1187460_-	YfiR family protein	NA	NA	NA	NA
WP_001168054.1\|1188212_1189283_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.3e-90	51.2
WP_000225221.1\|1189293_1190415_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_072661174.1\|1190457_1191618_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_001386991.1\|1191716_1191764_-	hypothetical protein	NA	NA	NA	NA
WP_000178456.1\|1191867_1192209_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197686.1\|1192479_1193217_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079107.1\|1193351_1194332_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000040115.1\|1194328_1195060_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235102.1\|1195189_1197763_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000230376.1\|1203618_1204917_+	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_001300818.1\|1204913_1205237_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949265.1\|1205282_1206638_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000082949.1\|1206751_1209412_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_001307345.1\|1209443_1210142_-	DTW domain-containing protein	NA	NA	NA	NA
WP_073461602.1\|1210210_1210630_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.8e-14	37.5
WP_000997403.1\|1210836_1211874_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1692624 : 1702066

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569361.1\|1692624_1693551_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8
WP_000783120.1\|1693555_1694287_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1694267_1694375_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|1694434_1695166_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001295431.1\|1695387_1697073_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1697069_1697789_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1697835_1698306_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1698346_1698808_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001331478.1\|1698932_1700933_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.0
WP_001292767.1\|1700929_1702066_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.6e-161	97.1

DBSCAN-SWA_4

1804363 : 1811886

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001115981.1\|1804363_1805758_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.3e-19	33.5
WP_053882441.1\|1805915_1806911_+	SDR family oxidoreductase	A0A1V0QG29	Shearwaterpox_virus	4.2e-09	26.3
WP_000183060.1\|1807153_1808047_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_033870517.1\|1808418_1809504_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.3e-100	53.9
WP_044863830.1\|1809503_1810403_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.3e-29	35.2
WP_033870519.1\|1810460_1811339_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.0e-107	64.5
WP_033870520.1\|1811343_1811886_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.7e-44	57.9

DBSCAN-SWA_5

2479139 : 2540418

Escherichia_phage(44.0%)

terminase,tail,lysis,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000837924.1\|2479139_2480273_+	porin OmpN	Q1MVN1	Enterobacteria_phage	8.3e-118	58.8
WP_001082294.1\|2480413_2480848_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.0e-28	52.8
WP_001157926.1\|2481112_2481286_-	hypothetical protein	NA	NA	NA	NA
WP_120795384.1\|2481625_2481739_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|2481807_2482041_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000086527.1\|2482357_2482948_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_001698950.1\|2483045_2483621_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.8
WP_073461631.1\|2483620_2486983_-\|tail	prophage tail fiber N-terminal domain-containing protein	X2KTY7	Enterobacteria_phage	8.1e-12	36.4
WP_001230375.1\|2487047_2487647_-	Ail/Lom family protein	A0A291AWV3	Escherichia_phage	5.7e-110	98.5
WP_061355519.1\|2487716_2491130_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	98.0
WP_000741591.1\|2491190_2491838_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.4e-109	94.9
WP_001379783.1\|2491735_2492479_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.0e-146	96.7
WP_001152422.1\|2492484_2493183_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.6e-125	93.1
WP_000024051.1\|2493182_2493521_-\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
WP_072686787.1\|2493513_2496747_-\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	6.4e-115	34.9
WP_012565075.1\|2497220_2497580_-	hypothetical protein	NA	NA	NA	NA
WP_000094292.1\|2497730_2498693_-	hypothetical protein	A0A059VG08	Pseudomonas_phage	4.5e-56	39.2
WP_073461629.1\|2498719_2499112_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_001029815.1\|2499108_2499489_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.1e-18	44.4
WP_000524260.1\|2499489_2499873_-	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_000634214.1\|2499872_2500268_-	hypothetical protein	NA	NA	NA	NA
WP_000908084.1\|2500271_2500448_-	hypothetical protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
WP_000918487.1\|2500490_2501630_-	hypothetical protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
WP_073461628.1\|2501728_2502493_-	hypothetical protein	G8C7P6	Escherichia_phage	9.0e-84	64.2
WP_001351715.1\|2502597_2503710_-	hypothetical protein	I6PD76	Cronobacter_phage	4.2e-114	54.5
WP_000763704.1\|2503693_2505100_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	3.0e-186	69.0
WP_000625348.1\|2505102_2506404_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.6
WP_000089447.1\|2506384_2507479_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	5.9e-113	80.5
WP_000613571.1\|2507482_2507734_-	hypothetical protein	NA	NA	NA	NA
WP_001204037.1\|2507669_2508602_-	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.4e-83	54.9
WP_001291094.1\|2508594_2509386_-	ParB N-terminal domain-containing protein	R4TG31	Halovirus	2.8e-48	40.2
WP_001097895.1\|2509523_2510981_-	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
WP_001228688.1\|2511177_2511363_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	3.6e-15	96.5
WP_001135310.1\|2511579_2512077_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	9.3e-90	96.4
WP_000839565.1\|2512076_2512292_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_001348108.1\|2512543_2512918_-	hypothetical protein	NA	NA	NA	NA
WP_000506936.1\|2513089_2513518_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000640161.1\|2514562_2515105_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.9e-76	75.7
WP_000247763.1\|2515101_2515392_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5
WP_000940319.1\|2515391_2515991_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
WP_000149055.1\|2516804_2517143_+	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_001117227.1\|2517866_2519066_+	MFS transporter	NA	NA	NA	NA
WP_000957774.1\|2519077_2519770_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_000019009.1\|2519766_2520648_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000625667.1\|2520778_2522056_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001676522.1\|2522119_2524117_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.3e-21	26.2
WP_001151151.1\|2524457_2524880_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	88.5
WP_001262393.1\|2524920_2525991_-	hypothetical protein	A0A088CD36	Shigella_phage	4.2e-63	65.2
WP_000693853.1\|2526062_2526488_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001072337.1\|2526484_2526739_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.8e-18	60.3
WP_000233320.1\|2526818_2527238_+	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
WP_001169151.1\|2527669_2527825_+	YdaF family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_001312793.1\|2527821_2528310_-	superinfection exclusion protein B	NA	NA	NA	NA
WP_000560225.1\|2528751_2528973_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	4.9e-35	97.3
WP_001352098.1\|2528972_2529143_+	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000632297.1\|2529217_2529493_+	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
WP_001532611.1\|2529594_2532195_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	3.9e-248	63.5
WP_000166319.1\|2532187_2532997_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_001317028.1\|2533053_2533248_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_000276809.1\|2533240_2533450_+	double-strand break reduction protein RcbA	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
WP_000079604.1\|2533528_2533744_+	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000040852.1\|2533745_2534981_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
WP_001153728.1\|2535032_2535968_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.0e-145	98.4
WP_000123738.1\|2536096_2537470_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_000387388.1\|2537947_2538931_-	zinc transporter ZntB	NA	NA	NA	NA
WP_000628065.1\|2539185_2540418_+	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5

DBSCAN-SWA_6

2986309 : 3035163

Bacillus_phage(11.11%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000886683.1\|2986309_2987602_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067755.1\|2987692_2989036_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|2989046_2989658_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077012.1\|2989812_2993880_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_073461694.1\|2994014_2994509_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537418.1\|2995053_2996019_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
WP_001043618.1\|2996141_2997908_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	5.4e-23	24.3
WP_001202188.1\|2997908_2999630_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.9e-20	25.2
WP_001241678.1\|2999671_3000376_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3000660_3000879_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_001274547.1\|3001369_3002212_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000839253.1\|3002296_3002494_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001054233.1\|3002510_3002999_-	hypothetical protein	NA	NA	NA	NA
WP_000854686.1\|3002995_3003379_-	toxin	NA	NA	NA	NA
WP_001360163.1\|3003455_3003836_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086769.1\|3003846_3004530_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	3.1e-27	35.6
WP_000692298.1\|3004548_3004770_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_001186726.1\|3004832_3005309_-	RadC family protein	NA	NA	NA	NA
WP_000214307.1\|3005324_3005810_-	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.5
WP_001234732.1\|3005901_3006720_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.0e-45	39.3
WP_000820472.1\|3007046_3009893_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_072649097.1\|3010264_3011137_-	GTPase family protein	NA	NA	NA	NA
WP_000200811.1\|3011400_3012972_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.2e-104	42.7
WP_000019443.1\|3013829_3014822_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	3.2e-182	99.4
WP_000183578.1\|3015935_3016745_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_000721956.1\|3016842_3019065_+	glycosyltransferase	NA	NA	NA	NA
WP_000019443.1\|3019263_3020256_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	3.2e-182	99.4
WP_162842843.1\|3020703_3021917_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	3.9e-166	97.6
WP_089578733.1\|3021909_3023039_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.5e-47	40.6
WP_000654812.1\|3023035_3024004_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	2.1e-186	99.7
WP_160379547.1\|3025287_3026433_-	glycosyltransferase	NA	NA	NA	NA
WP_000683047.1\|3026433_3027324_-	glycosyltransferase	NA	NA	NA	NA
WP_000828112.1\|3027320_3028475_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	7.7e-79	41.6
WP_001084506.1\|3028493_3030386_-	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_000433876.1\|3030400_3031141_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.5e-08	27.2
WP_000876712.1\|3031140_3031908_-	ABC transporter permease	NA	NA	NA	NA
WP_012311662.1\|3033365_3033518_+	hypothetical protein	NA	NA	NA	NA
WP_012311606.1\|3033543_3035163_+\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

3758931 : 3821197

Enterobacteria_phage(12.5%)

plate,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000611738.1\|3758931_3759345_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000393845.1\|3759348_3761199_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000348806.1\|3761162_3762245_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001113725.1\|3762269_3763550_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001080149.1\|3763546_3764071_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000246437.1\|3764073_3765405_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_000343302.1\|3765409_3766171_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_072649719.1\|3766179_3769017_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	5.9e-80	27.7
WP_000088859.1\|3769013_3769757_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_001240530.1\|3769761_3771174_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_122985538.1\|3771282_3774717_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001087745.1\|3774727_3776080_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_001284199.1\|3776103_3776586_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000908052.1\|3776629_3777544_+	hypothetical protein	NA	NA	NA	NA
WP_001236649.1\|3777553_3778033_+	hypothetical protein	NA	NA	NA	NA
WP_001086142.1\|3778169_3778955_-	aminopeptidase	NA	NA	NA	NA
WP_001297205.1\|3779494_3780226_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
WP_000917883.1\|3780290_3780758_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001297210.1\|3780754_3781477_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001052710.1\|3781510_3782266_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000644685.1\|3782337_3783696_+	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_000211690.1\|3783743_3784514_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001230983.1\|3784591_3785392_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000648606.1\|3785632_3786547_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000997010.1\|3786543_3787347_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.4e-39	36.2
WP_073461787.1\|3793104_3793677_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000593994.1\|3793864_3794896_+	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001294600.1\|3794888_3795542_+	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000874224.1\|3795581_3796397_+	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001202329.1\|3796514_3796919_+	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000094011.1\|3796915_3797623_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001260712.1\|3797734_3799453_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000399647.1\|3800533_3801514_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000239192.1\|3801763_3802474_-	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_000635316.1\|3802487_3802910_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_001185290.1\|3802906_3803452_-	YaeQ family protein	NA	NA	NA	NA
WP_000417058.1\|3803617_3803818_+	YaeP family protein	NA	NA	NA	NA
WP_000062312.1\|3803804_3804065_+	Rho-binding antiterminator	NA	NA	NA	NA
WP_000176578.1\|3804113_3805412_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000901098.1\|3805476_3805866_-	VOC family protein	NA	NA	NA	NA
WP_001020973.1\|3805922_3808064_-	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000055741.1\|3808162_3809122_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001294757.1\|3809134_3812617_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000569430.1\|3812653_3813250_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
WP_000139667.1\|3813246_3814395_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000565966.1\|3814394_3815183_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|3815186_3815642_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_001139279.1\|3815746_3816772_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000758956.1\|3816775_3817261_-	molecular chaperone Skp	NA	NA	NA	NA
WP_001240896.1\|3817382_3819815_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_001295561.1\|3819844_3821197_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP052879

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052879_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052879_1

61104-61223

Orphan

Consensus_repeat	Method
TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052879_1

>merge|NZ_CP052879|1|61104-61223|CRISPRCasFinder
TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCAGTGCGCAGCCATCCACCTTTCATGAAAATTACAGTGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA

>NZ_CP052879|1|1|61104-61223|CRISPRCasFinder
TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	GTGCGCAGCCATCCACCTTTCATGAAAATTACAG
TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052879.1\|WP_000435064.1\|59148_59991_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP052879.1\|WP_001074384.1\|58698_59145_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052879.1\|WP_024129959.1\|60011_60851_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP052879.1\|WP_000220561.1\|62326_62608_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP052879.1\|WP_000347021.1\|54046_54226_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052879.1\|WP_000121743.1\|62085_62337_+\|plasmid-stabilization-protein	unknown	unknown	gnl\|CDD\|179484
NZ_CP052879.1\|WP_000203199.1\|54341_54986_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239736
NZ_CP052879.1\|WP_000051066.1\|55952_56183_+\|partitioning-protein	unknown	unknown	gnl\|CDD\|117819
NZ_CP052879.1\|WP_001067858.1\|52276_52981_+\|IS6-like-element-IS26-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP052879.1\|WP_024129958.1\|58208_58562_-\|DNA-distortion-protein-3	unknown	unknown	unknown
NZ_CP052879.1\|WP_012291478.1\|56606_57671_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP052879.1\|WP_000864788.1\|55280_55901_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760

Protein	Function_ID	Function_description	E-value
NZ_CP052879.1\|WP_000435064.1\|59148_59991_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	6.74541e-13
NZ_CP052879.1\|WP_000203199.1\|54341_54986_-\|recombinase-family-protein	gnl\|CDD\|239736	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.	3.98678e-71
NZ_CP052879.1\|WP_000051066.1\|55952_56183_+\|partitioning-protein	gnl\|CDD\|117819	pfam09274, ParG, ParG. Members of this family of plasmid partition proteins adopt a ribbon-helix-helix fold, with a core of four alpha-helices. They are an essential component of the DNA partition complex of the multidrug resistance plasmid TP228.	4.81797e-42
NZ_CP052879.1\|WP_001067858.1\|52276_52981_+\|IS6-like-element-IS26-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.07441e-69
NZ_CP052879.1\|WP_024129959.1\|60011_60851_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.05812e-22
NZ_CP052879.1\|WP_000220561.1\|62326_62608_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	2.37215e-20
NZ_CP052879.1\|WP_012291478.1\|56606_57671_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.38468e-29
NZ_CP052879.1\|WP_000121743.1\|62085_62337_+\|plasmid-stabilization-protein	gnl\|CDD\|179484	PRK02854, PRK02854, primosomal protein DnaT.	2.40816e-08
NZ_CP052879.1\|WP_000864788.1\|55280_55901_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.18908e-34

>NZ_CP052879.1|WP_024129959.1|60011_60851_-|replication-initiation-protein
MNLLSVTKKTKIRHRNEINSTFSSLPLSARRILFMAMAQIDSREELSEGATFRITAREYAFIADIDVTGAYRQLKEGAEELQASVIRIPRNQLLTAQGNQSSGHTKKRGKLPSDAVRLMNLTAFCDYVESEGYIDIAFSHVIEPYITMLKDSYTTQVLISSVRLADQNSNMLYQFIRKQYSSGKKTFFDIEVDVLKDELELFRIDNGEKVYLYQNFKDFNKVFLQKNIEKINQYTEINHLEVKIVKRVARRASKLRFSYKIDKESEGLDTRIPYGFRGA
>NZ_CP052879.1|WP_000435064.1|59148_59991_-|replication-initiation-protein
MEQIKLHKQGGAAVIIIPASMIENTGWEDGTLLEVLEINETLHIRRKTESGALATKACPSLFSSTMRHVNYDKIIRYNSGLNLLVNELSFSARRVFFICLYYYFENKLESDKSLLIRADKYAEFVGVERSVAYKQMKDAADFFSRNKNLITHCDYISNEGLLRVMFSSKTINYITAIDSRKYQVTELPLKSALSLQGRYSWPLYQLIKFSHLKSFTIGVDELKKEIGYIQNQKFSFFKRDGINIAIDEITERTDVKNIKCVNAERQGRRVSKVRFEIEMR
>NZ_CP052879.1|WP_001074384.1|58698_59145_-|hypothetical-protein
MAKIYQFPQGEERAKFRKEIARERKKRFAVKTGSTFVKWLGWGWFYLRLLAASVLHFIFVFVLAILGAFKWAVFWLGGILCVITWYHLDHQLWTPQNLTIPVITATWILGLLAEPLMELLNKTMPWHKLLVPEPADESTENSSEISQQ
>NZ_CP052879.1|WP_024129958.1|58208_58562_-|DNA-distortion-protein-3
MKYLVKEFINEKYSKAVNILKDNLKEHYHVFYGVRLSEILFPTSEYGTDAFFKEFELINSVILPLVIFDFIDRKPIMVIGFEEAPGIDSLIDSGMEVVLLDGLSDLLLVEKLMPLFD
>NZ_CP052879.1|WP_012291478.1|56606_57671_+|AAA-family-ATPase
MKTISLFNNKGGVGKTTLTWNLSVSLSAKGKSVLLIDFDPQCNLSIALLGETGFSDLLKKDANNPYGKTIRAFCQPFIQQDILPVVHTFPPQFPMEPGSGRLDIAPGDFWLNNLSDVISVGTDLIAGNAVNRFLIPSLIASKAQELNNCEYDYVLIDVPPSFNTIVRSALYCSDYFLVPCTADIFSAYCIGLIGETLPKFRDDWEQGIRRTSAQNNSLISQKGSPKFAGWVFNGFDKRKNPGQQNSSEIAADAAHRDKIIDSVKNDLRPKLASIKTYSAVASFTPDTPVAKVEDLNVMAPDSILQGVPLRYLSTVAPTRGVLARGAWSGPQKALMQTMSAEHDVLADYIIQNFV
>NZ_CP052879.1|WP_000051066.1|55952_56183_+|partitioning-protein
MSLEKAHTSVKKMTFGENRDLERVVTAPVSSGKIKRVNVNFDEEKHTRFKAACARKGTSITDVVNQLVDNWLKENE
>NZ_CP052879.1|WP_000864788.1|55280_55901_+|ParA-family-protein
MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEIVRMFE
>NZ_CP052879.1|WP_000203199.1|54341_54986_-|recombinase-family-protein
MTSNAPTNFVRAYLRASTAEQDASRALETIEAFARERGLIICSYYIENESGSRLDRPELFRLLRDCQQNDILLIEDVDRLSRLSGEDWNTLKKMIRQKDIRVMAVNVPTTWINSGMSEFDSRLFAAINDMLLDMLAAVARRDYEQRRERQKQGIEKARKDGKYKGRKPNQARHDAIIRLIESGSSWTQVQKVLGCSRGTISSAIKRKSLQSSGE
>NZ_CP052879.1|WP_000347021.1|54046_54226_+|hypothetical-protein
MDFMSILGRCLLLPFPVAMFVGCLFPGIDDRFTGMFMSFIVGCLSWYITKPKPQKAEVA
>NZ_CP052879.1|WP_001067858.1|52276_52981_+|IS6-like-element-IS26-family-transposase
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>NZ_CP052879.1|WP_000121743.1|62085_62337_+|plasmid-stabilization-protein
MSYQILTTTAASITDLKKNPMGTVAEGEGDAVAILNRNEPAFYCVPPKLYAYYRELAEDAELNAVADERMKNPEIVKVNLDDL
>NZ_CP052879.1|WP_000220561.1|62326_62608_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MTYELAFDRRALKEWQKLGHTIREQFKKKLAERLENPRVPAARLHGHADRYKIKLRASGYRLVYQVIDEKVVLLVIAVGRRESSEVYQIADMR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_KX518744	Escherichia coli strain HYEC7 plasmid pHYEC7-110, complete sequence	63874-63907	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP041286	Escherichia coli strain 54 plasmid p54-tetX, complete sequence	64169-64202	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_KU321583	Escherichia coli strain E80 plasmid pE80, complete sequence	38215-38248	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_KT990220	Escherichia coli strain 42-2 plasmid p42-2, complete sequence	37006-37039	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP010164	Escherichia coli strain H2 plasmid A, complete sequence	20751-20784	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP019647	Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm6 plasmid pSTM6-275, complete sequence	239581-239614	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP022964	Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal1, complete sequence	30266-30299	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP024467	Shigella dysenteriae strain BU53M1 plasmid unnamed1, complete sequence	17630-17663	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_LS999563	Escherichia coli isolate EC-TO143 plasmid 4, complete sequence	16611-16644	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_LS999563	Escherichia coli isolate EC-TO143 plasmid 4, complete sequence	53074-53107	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP019284	Escherichia coli strain 13P484A plasmid p13P484A-4, complete sequence	32601-32634	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP047093	Salmonella sp. S13 plasmid pS13-4, complete sequence	1762-1795	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP051432	Escherichia sp. SCLE84 plasmid pSCLE2, complete sequence	23725-23758	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP046002	Escherichia coli strain 1916D6 plasmid p1916D6-2, complete sequence	35337-35370	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP045188	Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence	26770-26803	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	41390-41423	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	60962-60995	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032386	Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence	39391-39424	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032389	Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_2, complete sequence	9889-9922	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_LT904873	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 plasmid 2	5696-5729	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_KT754163	Shigella dysenteriae 1 strain A5468 plasmid pA5468, complete sequence	12265-12298	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP033383	Salmonella enterica subsp. enterica strain CFSA300 plasmid pCFSA300-2, complete sequence	7366-7399	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP020836	Escherichia coli strain CFSAN051542 plasmid pCFSAN051542, complete sequence	20407-20440	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP038140	Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence	93494-93527	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP043216	Salmonella enterica subsp. enterica serovar Heidelberg strain SL-312 plasmid pET8.2-IncX1, complete sequence	32193-32226	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP042617	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-2, complete sequence	25537-25570	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP031361	Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p2, complete sequence	27033-27066	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP044153	Shigella flexneri strain AR-0425 plasmid pAR-0425-1, complete sequence	25749-25782	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP040929	Escherichia coli strain YY76-1 plasmid pYY76-1-2, complete sequence	2187-2220	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP033386	Salmonella enterica subsp. enterica strain CFSA1007 plasmid pCFSA1007-2, complete sequence	34721-34754	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP041177	Salmonella enterica subsp. enterica serovar Enteritidis strain SJTUF12367v2 plasmid p12367A, complete sequence	4942-4975	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP034761	Klebsiella pneumoniae strain NB5306 plasmid unnamed2, complete sequence	47580-47613	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050707	Salmonella enterica subsp. enterica serovar Enteritidis strain SE124 plasmid pSE124-1, complete sequence	14631-14664	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP047339	Klebsiella pneumoniae strain 2019036D plasmid p2019036D-35kb, complete sequence	28949-28982	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_010860	Salmonella enterica subsp. enterica serovar Enteritidis plasmid pSE34, complete sequence	32623-32656	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP022453	Salmonella enterica subsp. enterica serovar Indiana strain D90 plasmid pD90-3, complete sequence	5893-5926	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP024153	Escherichia coli strain 14EC033 plasmid p14EC033f, complete sequence	53536-53569	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP030208	Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence	39815-39848	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP005994	Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064 plasmid unnamed, complete sequence	30028-30061	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032450	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence	29110-29143	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP010155	Escherichia coli strain D9 plasmid C, complete genome	14497-14530	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050174	Escherichia coli strain STB20-1 plasmid pSTB20-1T, complete sequence	58667-58700	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP029061	Escherichia coli strain FORC_081 plasmid pFORC_081_4, complete sequence	10786-10819	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP042589	Escherichia coli strain PK6 plasmid pRHEcCUB-1, complete sequence	29459-29492	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP025677	Escherichia albertii strain ChinaSP140150 plasmid pEA-1, complete sequence	79278-79311	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP041453	Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence	54169-54202	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MN816373	Escherichia coli strain A127 plasmid pA127-X1, complete sequence	29459-29492	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP052879	Escherichia coli strain C21 plasmid pC21-2, complete sequence	61147-61180	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP033379	Escherichia coli strain L73 plasmid pL73-2, complete sequence	99797-99830	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	88012-88045	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050724	Salmonella enterica subsp. enterica serovar Enteritidis strain SE74 plasmid pSE74-1, complete sequence	41949-41982	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP047573	Escherichia coli strain 2EC1 plasmid p2EC1-2, complete sequence	53619-53652	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_019106	Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence	32551-32584	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP010127	Escherichia coli strain C8 plasmid B, complete genome	33248-33281	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP027138	Escherichia coli strain AR_0369 plasmid unnamed2	85971-86004	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP022072	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 plasmid unnamed2, complete sequence	18650-18683	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP043935	Klebsiella pneumoniae strain 555 plasmid pSCKLB555-3, complete sequence	20398-20431	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP043935	Klebsiella pneumoniae strain 555 plasmid pSCKLB555-3, complete sequence	147056-147089	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP045998	Escherichia coli strain 1916D18 plasmid p1916D18-1, complete sequence	35339-35372	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032394	Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence	32800-32833	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_019256	Shigella sp. LN126 plasmid pLN126_33, complete sequence	2112-2145	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MH884649	Salmonella sp. strain Sa21 plasmid pSa21-IncX1-28K, complete sequence	16816-16849	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MH884651	Salmonella sp. strain Sa21 plasmid pSa21-TC-CIP, complete sequence	68260-68293	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MH229869	Escherichia coli plasmid pKANJ7, complete sequence	90-123	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050713	Salmonella enterica subsp. enterica serovar Enteritidis strain SE104 plasmid pSE104-1, complete sequence	33434-33467	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP041439	Escherichia coli strain YPE12 plasmid pYPE12-106k, complete sequence	96892-96925	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP041443	Escherichia coli strain YPE12 plasmid pYPE12-101k-tetX4, complete sequence	63333-63366	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MK461931	Escherichia coli strain F2_14D plasmid pF2_14D_HI2, complete sequence	238663-238696	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MK656937	Escherichia coli strain T3 plasmid pT3, complete sequence	37880-37913	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MK731977	Escherichia coli strain ENV103 plasmid pSGMCR103, complete sequence	22155-22188	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MK673546	Salmonella enterica subsp. enterica serovar Typhimurium strain GDD27-24 plasmid pGDD27-24, complete sequence	28203-28236	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032447	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence	18380-18413	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MH179305	Salmonella enterica subsp. enterica serovar Indiana strain JT01 plasmid pJT01, complete sequence	118004-118037	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MH179305	Salmonella enterica subsp. enterica serovar Indiana strain JT01 plasmid pJT01, complete sequence	151970-152003	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MH287085	Escherichia coli strain F2_12B plasmid pSDC-F2_12BHI2, complete sequence	243053-243086	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MH287084	Escherichia coli O157 strain SvETEC plasmid pSDE-SvHI2, complete sequence	241163-241196	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP025558	Salmonella enterica subsp. enterica serovar Enteritidis strain PIR00532 plasmid p2PIR00532, complete sequence	11939-11972	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	90443-90476	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219826	Escherichia coli strain RW8-1 plasmid pRW8-1_122k_tetX, complete sequence	43726-43759	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MG904998	Escherichia coli strain 15OD0495 plasmid p15ODTXV, complete sequence	48918-48951	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MG197491	Escherichia coli strain FKU92 plasmid pHNFKU92, complete sequence	33352-33385	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MG197498	Escherichia coli strain HZMCC14 plasmid pHNMCC14, complete sequence	58347-58380	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MG197503	Escherichia coli strain ZYTM118 plasmid pHNZY118, complete sequence	61256-61289	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MG197495	Escherichia coli strain AHC24 plasmid pHNAH24, complete sequence	61256-61289	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MF589339	Escherichia coli strain 2271 plasmid pCTXM-2271, complete sequence	27964-27997	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MG197502	Escherichia coli strain ZYTF32 plasmid pHNZY32, complete sequence	61256-61289	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219818	Escherichia coli strain RF148-1 plasmid pRF148-1_119k_tetX, complete sequence	43736-43769	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219820	Escherichia coli strain RF108-2 plasmid pRF108-2_97k_tetX, complete sequence	80789-80822	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219822	Escherichia coli strain RF14-1 plasmid pRF14-1_50k_tetX, complete sequence	38970-39003	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219823	Escherichia coli strain RF10-1 plasmid pRF10-1_119k_tetX, complete sequence	73817-73850	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_023323	Escherichia coli ACN001 plasmid pACN001-A, complete sequence	18865-18898	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MF554637	uncultured bacterium clone AA-100 plasmid pPIMMR, complete sequence	14942-14975	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP016575	Salmonella enterica subsp. enterica serovar Heidelberg strain AMR588-04-00435 plasmid pAMR588-04-00435_37, complete sequence	296-329	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP020060	Escherichia coli strain AR_0061 plasmid unitig_2, complete sequence	30572-30605	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032994	Escherichia coli strain W5-6 plasmid p2_W5-6, complete sequence	10049-10082	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MN783746	Escherichia coli plasmid pIncX1_p1, complete sequence	5290-5323	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_KX815983	Salmonella enterica subsp. enterica serovar Dublin strain N13-01125 plasmid pN13-01125, complete sequence	40397-40430	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_KU254580	Escherichia coli strain YD786 plasmid pYD786-3, complete sequence	25507-25540	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP042633	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-6, complete sequence	38916-38949	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032392	Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence	67739-67772	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP019272	Escherichia coli strain 13P460A plasmid p13P460A-1, complete sequence	35028-35061	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP053728	Escherichia coli strain CP61_Sichuan plasmid pCP61-IncN, complete sequence	69102-69135	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP037995	Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww281 plasmid psg_ww281	7255-7288	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP053740	Escherichia coli strain CP8-3_Sichuan plasmid pCP8-3-IncX1, complete sequence	9971-10004	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP016580	Salmonella enterica subsp. enterica serovar Heidelberg strain SH13-006 plasmid pSH13-006_37, complete sequence	23703-23736	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP046001	Escherichia coli strain 1916D6 plasmid p1916D6-1, complete sequence	49989-50022	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP021103	Escherichia coli strain 13P477T plasmid p13P477T-7, complete sequence	56470-56503	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP029182	Escherichia coli strain H9Ecoli plasmid p3-H9, complete sequence	2302-2335	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MN086778	Escherichia coli plasmid p16EC-IncN, complete sequence	90173-90206	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP053047	Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-tetX4, complete sequence	9874-9907	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP014974	Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 isolate ST073 plasmid pSTY3-1898, complete sequence	295-328	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032397	Salmonella enterica subsp. enterica serovar Dublin strain CVM 22429 plasmid p22429, complete sequence	220331-220364	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP035774	Klebsiella pneumoniae strain R46 plasmid pR46-27, complete sequence	12757-12790	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP044182	Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 plasmid pAR-0404-1, complete sequence	25543-25576	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP042608	Escherichia coli strain NCYU-29-19 plasmid pNCYU-29-19-2_MCR3, complete sequence	7171-7204	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MK461930	Escherichia coli strain 2009_36 plasmid p2009_36_HI2, complete sequence	45261-45294	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_019046	Escherichia coli plasmid pNMEC31_31, complete sequence	31361-31394	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP047460	Escherichia coli strain ZF31 plasmid pZF31-tetX-119kb, complete sequence	89191-89224	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP047466	Escherichia coli strain ZF34 plasmid pZF34-tetX-114kb, complete sequence	30748-30781	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP035315	Escherichia coli strain D72 plasmid pD72-IncX1, complete sequence	28493-28526	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050748	Salmonella enterica subsp. enterica serovar Typhimurium strain ST53 plasmid pST53-3, complete sequence	5878-5911	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_024961	Escherichia coli plasmid pIS15_43, strain ISI5, complete sequence	905-938	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_021842	Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069 plasmid pCFSAN002069_02, complete sequence	4017-4050	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_LT985261	Escherichia coli strain 657 plasmid RCS50_p, complete sequence	42585-42618	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_AP019678	Escherichia coli strain GSH8M-2 plasmid pGSH8M-2-3, complete sequence	49115-49148	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP009074	Escherichia coli ATCC 25922 plasmid unnamed, complete sequence	21137-21170	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP010168	Escherichia coli strain H3 plasmid A, complete genome	25682-25715	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_010378	Escherichia coli plasmid pOLA52, complete sequence	34562-34595	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	CP016512	Salmonella enterica subsp. enterica serovar Heidelberg strain SH14-028 plasmid pSH14-028_37, complete sequence	23704-23737	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP016529	Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_42, complete sequence	23704-23737	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP016518	Salmonella enterica subsp. enterica serovar Heidelberg strain CE-R2-11-0435 plasmid pCE-R2-11-0435_37, complete sequence	23705-23738	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032988	Escherichia coli strain BE2-5 plasmid p2_BE2-5, complete sequence	50710-50743	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP017633	Escherichia coli strain SLK172 plasmid pSLK172-2, complete sequence	23885-23918	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP012922	Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701 plasmid pSA02DT10168701_37, complete sequence	23704-23737	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP033093	Escherichia coli strain CP53 plasmid pCP53-38k, complete sequence	19532-19565	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP012926	Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_37, complete sequence	37369-37402	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP023360	Escherichia coli strain 1943 plasmid p54, complete sequence	52726-52759	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	CP043734	Escherichia coli strain CVM N17EC1164 plasmid pN17EC1164-1, complete sequence	37807-37840	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP039600	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014867 plasmid p12-6334.1, complete sequence	32872-32905	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP030283	Escherichia coli strain E308 plasmid pLKSZ02, complete sequence	49947-49980	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_011204	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence	70648-70681	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_017624	Salmonella enterica subsp. enterica serovar Heidelberg str. B182 plasmid pB182_37, complete sequence	23689-23722	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050710	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-1, complete sequence	15569-15602	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP024290	Escherichia coli O178:H19 strain 2012C-4431 plasmid unnamed1, complete sequence	33653-33686	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP048777	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-X, complete sequence	1446-1479	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP041631	Escherichia coli strain PE15 plasmid pPE15-27K, complete sequence	4799-4832	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050773	Salmonella enterica subsp. enterica serovar Indiana strain SI102 plasmid pSI102-2, complete sequence	30707-30740	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP041444	Escherichia coli strain YPE10 plasmid pYPE10-78k, complete sequence	38005-38038	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP019180	Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence	24566-24599	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050765	Salmonella enterica subsp. enterica serovar Indiana strain SI111 plasmid pSI111-1, complete sequence	6593-6626	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_010422	Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence	59434-59467	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050759	Salmonella enterica subsp. enterica serovar Indiana strain SI173 plasmid pSI173-2, complete sequence	5734-5767	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_AP022652	Escherichia coli strain 09-02E plasmid p2-09-02E, complete sequence	295-328	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP024136	Escherichia coli strain 14EC017 plasmid p14EC017b, complete sequence	79478-79511	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_LT985315	Escherichia coli strain ECOR 70 plasmid RCS99_p, complete sequence	47119-47152	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MN436006	Escherichia coli strain JS1-EC05 plasmid pEC05-X4, complete sequence	27492-27525	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MN436007	Escherichia coli strain JS3-EC12 plasmid pEC12-X4, complete sequence	27131-27164	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MK360096	Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence	44664-44697	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP045839	Citrobacter sp. H12-3-2 plasmid pH12-2, complete sequence	48284-48317	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP032381	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence	12454-12487	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MG825381	Escherichia coli strain 1108 plasmid p1108-NDM, complete sequence	43402-43435	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT197111	Escherichia coli strain RB3-1 plasmid pRB3-1_31K_tetX, complete sequence	12897-12930	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219817	Escherichia coli strain RF148-2 plasmid pRF148-2_101k_tetX, complete sequence	59284-59317	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219819	Escherichia coli strain RF52-1 plasmid pRF52-1_119k_tetX, complete sequence	118931-118964	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	MT219821	Escherichia coli strain RF45-1 plasmid pRF45-1_31k_tetX, complete sequence	3734-3767	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MG288677	Klebsiella pneumoniae strain F160070 plasmid p160070-CTXM, complete sequence	29004-29037	0	1.0
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP030195	Salmonella enterica strain SA20080453 plasmid pSA20080453.1, complete sequence	159-192	1	0.971
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP033353	Salmonella enterica subsp. enterica strain CFSA664 plasmid pCFSA664-1, complete sequence	78450-78483	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP050780	Salmonella enterica subsp. enterica serovar Indiana strain SI85 plasmid pSI85-1, complete sequence	203947-203980	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP022061	Salmonella enterica strain FDAARGOS_312 plasmid unnamed2, complete sequence	1711-1744	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	CP048927	Salmonella enterica subsp. enterica serovar Saintpaul strain NY-N14748 plasmid pN14748, complete sequence	45611-45644	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP029841	Salmonella enterica subsp. enterica serovar Typhimurium strain 01ST04081 plasmid p01ST04081A, complete sequence	98434-98467	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP028313	Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 plasmid pSH-04-2, complete sequence	41569-41602	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP018662	Salmonella enterica subsp. enterica serovar Enteritidis strain 95-0621 plasmid pSE95-0621-1, complete sequence	41992-42025	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	CP049987	Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N16S133 plasmid pN16S133, complete sequence	41386-41419	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	CP049982	Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N52030 plasmid pN52030, complete sequence	42740-42773	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NC_010421	Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1114, complete sequence	27662-27695	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_MK625201	Salmonella enterica subsp. enterica serovar Pullorum strain S9804 plasmid pSPUR, complete sequence	41824-41857	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP023476	Salmonella enterica subsp. enterica serovar Enteritidis strain FORC_075 plasmid pFORC75_2, complete sequence	33473-33506	2	0.941
NZ_CP052879_1	1.1\|61147\|34\|NZ_CP052879\|CRISPRCasFinder	61147-61180	34	NZ_CP044292	Escherichia coli strain P43A plasmid pP43A-1, complete sequence	44259-44292	4	0.882

1. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_KX518744 (Escherichia coli strain HYEC7 plasmid pHYEC7-110, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

2. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP041286 (Escherichia coli strain 54 plasmid p54-tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

3. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_KU321583 (Escherichia coli strain E80 plasmid pE80, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

4. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_KT990220 (Escherichia coli strain 42-2 plasmid p42-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

5. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP010164 (Escherichia coli strain H2 plasmid A, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

6. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP019647 (Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm6 plasmid pSTM6-275, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

7. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP022964 (Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

8. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP024467 (Shigella dysenteriae strain BU53M1 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

9. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_LS999563 (Escherichia coli isolate EC-TO143 plasmid 4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

10. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_LS999563 (Escherichia coli isolate EC-TO143 plasmid 4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

11. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP019284 (Escherichia coli strain 13P484A plasmid p13P484A-4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

12. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP047093 (Salmonella sp. S13 plasmid pS13-4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

13. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP051432 (Escherichia sp. SCLE84 plasmid pSCLE2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

14. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP046002 (Escherichia coli strain 1916D6 plasmid p1916D6-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

15. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP045188 (Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

16. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP031548 (Escherichia coli strain cq9 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

17. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP031548 (Escherichia coli strain cq9 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

18. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032386 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

19. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032389 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

20. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_LT904873 (Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 plasmid 2) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

21. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_KT754163 (Shigella dysenteriae 1 strain A5468 plasmid pA5468, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

22. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP033383 (Salmonella enterica subsp. enterica strain CFSA300 plasmid pCFSA300-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

23. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP020836 (Escherichia coli strain CFSAN051542 plasmid pCFSAN051542, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

24. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP038140 (Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

25. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP043216 (Salmonella enterica subsp. enterica serovar Heidelberg strain SL-312 plasmid pET8.2-IncX1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

26. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP042617 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

27. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP031361 (Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

28. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP044153 (Shigella flexneri strain AR-0425 plasmid pAR-0425-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

29. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP040929 (Escherichia coli strain YY76-1 plasmid pYY76-1-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

30. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP033386 (Salmonella enterica subsp. enterica strain CFSA1007 plasmid pCFSA1007-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

31. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP041177 (Salmonella enterica subsp. enterica serovar Enteritidis strain SJTUF12367v2 plasmid p12367A, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

32. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP034761 (Klebsiella pneumoniae strain NB5306 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

33. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050707 (Salmonella enterica subsp. enterica serovar Enteritidis strain SE124 plasmid pSE124-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

34. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP047339 (Klebsiella pneumoniae strain 2019036D plasmid p2019036D-35kb, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

35. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_010860 (Salmonella enterica subsp. enterica serovar Enteritidis plasmid pSE34, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

36. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP022453 (Salmonella enterica subsp. enterica serovar Indiana strain D90 plasmid pD90-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

37. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP024153 (Escherichia coli strain 14EC033 plasmid p14EC033f, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

38. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP030208 (Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

39. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP005994 (Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

40. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032450 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

41. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP010155 (Escherichia coli strain D9 plasmid C, complete genome) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

42. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050174 (Escherichia coli strain STB20-1 plasmid pSTB20-1T, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

43. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP029061 (Escherichia coli strain FORC_081 plasmid pFORC_081_4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

44. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP042589 (Escherichia coli strain PK6 plasmid pRHEcCUB-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

45. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP025677 (Escherichia albertii strain ChinaSP140150 plasmid pEA-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

46. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP041453 (Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

47. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MN816373 (Escherichia coli strain A127 plasmid pA127-X1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

48. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP052879 (Escherichia coli strain C21 plasmid pC21-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

49. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP033379 (Escherichia coli strain L73 plasmid pL73-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

50. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

51. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050724 (Salmonella enterica subsp. enterica serovar Enteritidis strain SE74 plasmid pSE74-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

52. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP047573 (Escherichia coli strain 2EC1 plasmid p2EC1-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

53. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_019106 (Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

54. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP010127 (Escherichia coli strain C8 plasmid B, complete genome) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

55. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP027138 (Escherichia coli strain AR_0369 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

56. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP022072 (Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

57. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP043935 (Klebsiella pneumoniae strain 555 plasmid pSCKLB555-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

58. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP043935 (Klebsiella pneumoniae strain 555 plasmid pSCKLB555-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

59. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP045998 (Escherichia coli strain 1916D18 plasmid p1916D18-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

60. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032394 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

61. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_019256 (Shigella sp. LN126 plasmid pLN126_33, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

62. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MH884649 (Salmonella sp. strain Sa21 plasmid pSa21-IncX1-28K, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

63. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MH884651 (Salmonella sp. strain Sa21 plasmid pSa21-TC-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

64. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MH229869 (Escherichia coli plasmid pKANJ7, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

65. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050713 (Salmonella enterica subsp. enterica serovar Enteritidis strain SE104 plasmid pSE104-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

66. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP041439 (Escherichia coli strain YPE12 plasmid pYPE12-106k, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

67. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP041443 (Escherichia coli strain YPE12 plasmid pYPE12-101k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

68. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MK461931 (Escherichia coli strain F2_14D plasmid pF2_14D_HI2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

69. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MK656937 (Escherichia coli strain T3 plasmid pT3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

70. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MK731977 (Escherichia coli strain ENV103 plasmid pSGMCR103, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

71. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MK673546 (Salmonella enterica subsp. enterica serovar Typhimurium strain GDD27-24 plasmid pGDD27-24, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

72. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032447 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

73. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MH179305 (Salmonella enterica subsp. enterica serovar Indiana strain JT01 plasmid pJT01, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

74. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MH179305 (Salmonella enterica subsp. enterica serovar Indiana strain JT01 plasmid pJT01, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

75. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MH287085 (Escherichia coli strain F2_12B plasmid pSDC-F2_12BHI2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

76. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MH287084 (Escherichia coli O157 strain SvETEC plasmid pSDE-SvHI2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

77. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP025558 (Salmonella enterica subsp. enterica serovar Enteritidis strain PIR00532 plasmid p2PIR00532, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

78. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

79. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219826 (Escherichia coli strain RW8-1 plasmid pRW8-1_122k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

80. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MG904998 (Escherichia coli strain 15OD0495 plasmid p15ODTXV, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

81. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MG197491 (Escherichia coli strain FKU92 plasmid pHNFKU92, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

82. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MG197498 (Escherichia coli strain HZMCC14 plasmid pHNMCC14, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

83. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MG197503 (Escherichia coli strain ZYTM118 plasmid pHNZY118, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

84. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MG197495 (Escherichia coli strain AHC24 plasmid pHNAH24, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

85. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MF589339 (Escherichia coli strain 2271 plasmid pCTXM-2271, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

86. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MG197502 (Escherichia coli strain ZYTF32 plasmid pHNZY32, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

87. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219818 (Escherichia coli strain RF148-1 plasmid pRF148-1_119k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

88. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219820 (Escherichia coli strain RF108-2 plasmid pRF108-2_97k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

89. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219822 (Escherichia coli strain RF14-1 plasmid pRF14-1_50k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

90. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219823 (Escherichia coli strain RF10-1 plasmid pRF10-1_119k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

91. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_023323 (Escherichia coli ACN001 plasmid pACN001-A, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

92. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MF554637 (uncultured bacterium clone AA-100 plasmid pPIMMR, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

93. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP016575 (Salmonella enterica subsp. enterica serovar Heidelberg strain AMR588-04-00435 plasmid pAMR588-04-00435_37, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

94. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP020060 (Escherichia coli strain AR_0061 plasmid unitig_2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

95. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032994 (Escherichia coli strain W5-6 plasmid p2_W5-6, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

96. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MN783746 (Escherichia coli plasmid pIncX1_p1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

97. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_KX815983 (Salmonella enterica subsp. enterica serovar Dublin strain N13-01125 plasmid pN13-01125, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

98. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_KU254580 (Escherichia coli strain YD786 plasmid pYD786-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

99. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP042633 (Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-6, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

100. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032392 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

101. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP019272 (Escherichia coli strain 13P460A plasmid p13P460A-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

102. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP053728 (Escherichia coli strain CP61_Sichuan plasmid pCP61-IncN, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

103. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP037995 (Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww281 plasmid psg_ww281) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

104. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP053740 (Escherichia coli strain CP8-3_Sichuan plasmid pCP8-3-IncX1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

105. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP016580 (Salmonella enterica subsp. enterica serovar Heidelberg strain SH13-006 plasmid pSH13-006_37, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

106. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP046001 (Escherichia coli strain 1916D6 plasmid p1916D6-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

107. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP021103 (Escherichia coli strain 13P477T plasmid p13P477T-7, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

108. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP029182 (Escherichia coli strain H9Ecoli plasmid p3-H9, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

109. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MN086778 (Escherichia coli plasmid p16EC-IncN, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

110. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP053047 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

111. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP014974 (Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 isolate ST073 plasmid pSTY3-1898, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

112. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032397 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 22429 plasmid p22429, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

113. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP035774 (Klebsiella pneumoniae strain R46 plasmid pR46-27, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

114. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP044182 (Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 plasmid pAR-0404-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

115. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP042608 (Escherichia coli strain NCYU-29-19 plasmid pNCYU-29-19-2_MCR3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

116. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MK461930 (Escherichia coli strain 2009_36 plasmid p2009_36_HI2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

117. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_019046 (Escherichia coli plasmid pNMEC31_31, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

118. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP047460 (Escherichia coli strain ZF31 plasmid pZF31-tetX-119kb, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

119. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP047466 (Escherichia coli strain ZF34 plasmid pZF34-tetX-114kb, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

120. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP035315 (Escherichia coli strain D72 plasmid pD72-IncX1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

121. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050748 (Salmonella enterica subsp. enterica serovar Typhimurium strain ST53 plasmid pST53-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

122. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_024961 (Escherichia coli plasmid pIS15_43, strain ISI5, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

123. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_021842 (Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069 plasmid pCFSAN002069_02, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

124. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_LT985261 (Escherichia coli strain 657 plasmid RCS50_p, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

125. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_AP019678 (Escherichia coli strain GSH8M-2 plasmid pGSH8M-2-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

126. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP009074 (Escherichia coli ATCC 25922 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

127. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP010168 (Escherichia coli strain H3 plasmid A, complete genome) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

128. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_010378 (Escherichia coli plasmid pOLA52, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

129. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to CP016512 (Salmonella enterica subsp. enterica serovar Heidelberg strain SH14-028 plasmid pSH14-028_37, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

130. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP016529 (Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_42, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

131. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP016518 (Salmonella enterica subsp. enterica serovar Heidelberg strain CE-R2-11-0435 plasmid pCE-R2-11-0435_37, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

132. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032988 (Escherichia coli strain BE2-5 plasmid p2_BE2-5, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

133. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP017633 (Escherichia coli strain SLK172 plasmid pSLK172-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

134. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP012922 (Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701 plasmid pSA02DT10168701_37, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

135. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP033093 (Escherichia coli strain CP53 plasmid pCP53-38k, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

136. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP012926 (Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_37, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

137. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP023360 (Escherichia coli strain 1943 plasmid p54, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

138. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to CP043734 (Escherichia coli strain CVM N17EC1164 plasmid pN17EC1164-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

139. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP039600 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014867 plasmid p12-6334.1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

140. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP030283 (Escherichia coli strain E308 plasmid pLKSZ02, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

141. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_011204 (Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

142. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_017624 (Salmonella enterica subsp. enterica serovar Heidelberg str. B182 plasmid pB182_37, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

143. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050710 (Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

144. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP024290 (Escherichia coli O178:H19 strain 2012C-4431 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

145. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP048777 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-X, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

146. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP041631 (Escherichia coli strain PE15 plasmid pPE15-27K, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

147. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050773 (Salmonella enterica subsp. enterica serovar Indiana strain SI102 plasmid pSI102-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

148. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP041444 (Escherichia coli strain YPE10 plasmid pYPE10-78k, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

149. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP019180 (Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

150. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050765 (Salmonella enterica subsp. enterica serovar Indiana strain SI111 plasmid pSI111-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

151. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_010422 (Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

152. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050759 (Salmonella enterica subsp. enterica serovar Indiana strain SI173 plasmid pSI173-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

153. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_AP022652 (Escherichia coli strain 09-02E plasmid p2-09-02E, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

154. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP024136 (Escherichia coli strain 14EC017 plasmid p14EC017b, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

155. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_LT985315 (Escherichia coli strain ECOR 70 plasmid RCS99_p, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

156. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MN436006 (Escherichia coli strain JS1-EC05 plasmid pEC05-X4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

157. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MN436007 (Escherichia coli strain JS3-EC12 plasmid pEC12-X4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

158. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MK360096 (Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

159. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP045839 (Citrobacter sp. H12-3-2 plasmid pH12-2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

160. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP032381 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

161. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MG825381 (Escherichia coli strain 1108 plasmid p1108-NDM, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

162. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT197111 (Escherichia coli strain RB3-1 plasmid pRB3-1_31K_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

163. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219817 (Escherichia coli strain RF148-2 plasmid pRF148-2_101k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

164. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219819 (Escherichia coli strain RF52-1 plasmid pRF52-1_119k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

165. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to MT219821 (Escherichia coli strain RF45-1 plasmid pRF45-1_31k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

166. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MG288677 (Klebsiella pneumoniae strain F160070 plasmid p160070-CTXM, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaattacag	Protospacer
**********************************

167. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP030195 (Salmonella enterica strain SA20080453 plasmid pSA20080453.1, complete sequence) position: , mismatch: 1, identity: 0.971

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgcagccatccacctttcatgaaaatcacag	Protospacer
*****************************.****

168. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP033353 (Salmonella enterica subsp. enterica strain CFSA664 plasmid pCFSA664-1, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gcccgcagccatccacctttcatgaaaattacag	Protospacer
*. *******************************

169. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP050780 (Salmonella enterica subsp. enterica serovar Indiana strain SI85 plasmid pSI85-1, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gcccgcagccatccacctttcatgaaaattacag	Protospacer
*. *******************************

170. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP022061 (Salmonella enterica strain FDAARGOS_312 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

171. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to CP048927 (Salmonella enterica subsp. enterica serovar Saintpaul strain NY-N14748 plasmid pN14748, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

172. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP029841 (Salmonella enterica subsp. enterica serovar Typhimurium strain 01ST04081 plasmid p01ST04081A, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

173. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP028313 (Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 plasmid pSH-04-2, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

174. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP018662 (Salmonella enterica subsp. enterica serovar Enteritidis strain 95-0621 plasmid pSE95-0621-1, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

175. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to CP049987 (Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N16S133 plasmid pN16S133, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

176. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to CP049982 (Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N52030 plasmid pN52030, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

177. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NC_010421 (Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1114, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

178. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_MK625201 (Salmonella enterica subsp. enterica serovar Pullorum strain S9804 plasmid pSPUR, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

179. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP023476 (Salmonella enterica subsp. enterica serovar Enteritidis strain FORC_075 plasmid pFORC75_2, complete sequence) position: , mismatch: 2, identity: 0.941

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
gtgcgtacccatccacctttcatgaaaattacag	Protospacer
*****.* **************************

180. spacer 1.1|61147|34|NZ_CP052879|CRISPRCasFinder matches to NZ_CP044292 (Escherichia coli strain P43A plasmid pP43A-1, complete sequence) position: , mismatch: 4, identity: 0.882

gtgcgcagccatccacctttcatgaaaattacag	CRISPR spacer
tcgaacagccatccacctttcatgaaaattacag	Protospacer
 .* .*****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

171 : 52981

Escherichia_phage(31.25%)

transposase,integrase

attL 10211:10270|attR 52213:53033

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000948429.1\|171_1371_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000957857.1\|1380_1569_-	hypothetical protein	NA	NA	NA	NA
WP_000572405.1\|3147_3942_+	aminoglycoside O-phosphotransferase APH(3')-IIa	Q75ZG1	Hepacivirus	9.5e-153	100.0
WP_001067858.1\|4248_4953_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000888203.1\|5054_5534_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_000347934.1\|5603_8756_-	multidrug efflux RND transporter permease subunit OqxB	NA	NA	NA	NA
WP_002914189.1\|8779_9955_-	multidrug efflux RND transporter periplasmic adaptor subunit OqxA	NA	NA	NA	NA
10211:10270	attL	NA	NA	NA	NA
WP_001067858.1\|10274_10979_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_096098411.1\|10988_11447_+	replication initiation protein	NA	NA	NA	NA
WP_001067858.1\|14403_15108_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000274934.1\|15786_16071_-	hypothetical protein	NA	NA	NA	NA
WP_000545925.1\|16203_16500_-	hypothetical protein	NA	NA	NA	NA
WP_000932975.1\|17384_17624_-	hypothetical protein	NA	NA	NA	NA
WP_000881513.1\|17633_18038_-	hypothetical protein	NA	NA	NA	NA
WP_000447669.1\|18095_18521_-	antirestriction protein	NA	NA	NA	NA
WP_000861760.1\|18932_19373_+	translesion error-prone DNA polymerase V autoproteolytic subunit MucA	A0A1W6JNS2	Morganella_phage	1.2e-27	48.8
WP_013188477.1\|19360_20626_+	translesion error-prone DNA polymerase V subunit MucB	F1C5A5	Cronobacter_phage	2.0e-120	54.0
WP_001452808.1\|20776_21568_+	SprT-like domain-containing protein	NA	NA	NA	NA
WP_000057569.1\|21582_21924_-	hypothetical protein	NA	NA	NA	NA
WP_000359511.1\|22483_23203_+	replication initiation protein	I3WF20	Macacine_betaherpesvirus	1.1e-19	28.0
WP_000583523.1\|24479_25076_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.4e-36	43.7
WP_000845039.1\|25467_26481_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|26625_27123_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|27234_27525_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|27530_28322_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_073461727.1\|28485_28833_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
WP_000259031.1\|28826_29666_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|30070_31612_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_012372818.1\|32204_32960_-	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_000027057.1\|33129_33990_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_014342213.1\|34544_34670_+	hypothetical protein	NA	NA	NA	NA
WP_000971921.1\|34811_36182_-\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
WP_000080861.1\|36296_37433_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_000248278.1\|37483_37711_-	hypothetical protein	NA	NA	NA	NA
WP_000951934.1\|37734_37926_+	hypothetical protein	NA	NA	NA	NA
WP_000587837.1\|38407_38950_-	AAA family ATPase	NA	NA	NA	NA
WP_000557454.1\|38962_39823_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_001067855.1\|40055_40760_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|40765_40906_+	hypothetical protein	NA	NA	NA	NA
WP_001366550.1\|41391_42129_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|42125_42350_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|42560_44054_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_021598067.1\|44084_44969_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_023300759.1\|45185_46400_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7
WP_001255015.1\|46427_46733_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_032153701.1\|46999_48199_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_001493764.1\|48304_48955_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000844627.1\|48986_49229_-\|transposase	transposase	NA	NA	NA	NA
WP_000480972.1\|49534_50371_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082320.1\|50370_51174_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001043260.1\|51234_52050_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_001067858.1\|52276_52981_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
52213:53033	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP052881

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2155 : 16708

Escherichia_phage(53.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001285362.1\|2155_3352_+	ParA family protein	A0A077SL49	Escherichia_phage	1.6e-225	100.0
WP_000038866.1\|3368_4370_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.7e-178	100.0
WP_000067710.1\|4595_6302_+	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	100.0
WP_023156142.1\|6362_7952_+	hypothetical protein	A0A077SLN8	Escherichia_phage	2.8e-305	99.6
WP_124842093.1\|7961_8777_+	hypothetical protein	A0A1B0V835	Salmonella_phage	1.4e-111	98.5
WP_000035301.1\|8812_9394_+	hypothetical protein	Q1MVJ8	Enterobacteria_phage	7.3e-102	97.4
WP_000509939.1\|9405_9915_+	hypothetical protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
WP_001313475.1\|10031_10187_-	type I toxin-antitoxin system toxin HokD	A0A1I9LJU7	Stx_converting_phage	1.0e-15	92.2
WP_029401368.1\|10368_10614_-	hypothetical protein	A0A1B0VDM5	Salmonella_phage	1.2e-13	46.2
WP_001379176.1\|10664_11510_-	hypothetical protein	Q1MVK3	Enterobacteria_phage	5.9e-153	100.0
WP_001187876.1\|11539_12340_-	phage antirepressor KilAC domain-containing protein	A0A077SL47	Escherichia_phage	1.4e-148	100.0
WP_000743164.1\|12503_13547_-	phage antirepressor Ant	Q71TN2	Escherichia_phage	2.0e-171	92.5
WP_169711502.1\|13521_13764_-	host cell division inhibitor Icd-like protein	Q38414	Enterobacteria_phage	3.4e-37	98.6
WP_001033469.1\|14900_15440_+	DUF5384 family protein	A0A077SL46	Escherichia_phage	1.8e-46	100.0
WP_000523978.1\|16096_16708_+	hypothetical protein	A0A077SLH8	Escherichia_phage	5.8e-110	100.0

DBSCAN-SWA_2

21077 : 93519

Escherichia_phage(71.21%)

terminase,holin,tail,portal,plate,integrase

attL 44965:44981|attR 93493:93509

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000002800.1\|21077_21434_+	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
WP_001189838.1\|22862_23699_+	hypothetical protein	A0A077SLH5	Escherichia_phage	5.8e-153	99.3
WP_001286326.1\|23777_24212_+	hypothetical protein	A0A077SLL3	Escherichia_phage	3.3e-75	100.0
WP_169711501.1\|24223_25630_+\|tail	tail fiber protein	Q71TP5	Escherichia_phage	1.2e-222	94.2
WP_072658107.1\|26052_27243_+\|tail	tail fiber protein	A0A1B0VFW4	Salmonella_phage	5.9e-42	58.9
WP_063117167.1\|27242_27821_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.9e-95	88.5
WP_124842119.1\|27864_28437_-	serine acetyltransferase	NA	NA	NA	NA
WP_024235795.1\|28925_29459_-\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	3.5e-95	98.3
WP_169711504.1\|29461_30763_-\|tail	phage tail protein	Q1MVL8	Enterobacteria_phage	7.7e-245	93.1
WP_029401675.1\|31029_31590_-	recombinase family protein	Q71TD8	Escherichia_phage	4.7e-98	99.5
WP_000332810.1\|31717_31999_+	hypothetical protein	Q71TD9	Escherichia_phage	1.8e-45	98.9
WP_000887652.1\|32066_32396_+\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
WP_000580776.1\|32392_32836_+	hypothetical protein	A0A077SK09	Escherichia_phage	1.3e-82	100.0
WP_001369351.1\|32822_33425_+	hypothetical protein	Q1MVM6	Enterobacteria_phage	3.5e-99	99.0
WP_047649461.1\|33426_35346_+	hypothetical protein	A0A077SLK4	Escherichia_phage	0.0e+00	97.0
WP_029401678.1\|35342_35708_+	hypothetical protein	A0A077SK35	Escherichia_phage	2.3e-45	99.2
WP_063117182.1\|35720_38708_+	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.2
WP_001165932.1\|38697_39009_+	hypothetical protein	A0A077SLG5	Escherichia_phage	1.8e-46	100.0
WP_000724558.1\|39751_40864_+	porin OmpC	Q1MVN1	Enterobacteria_phage	4.6e-198	96.0
WP_000068862.1\|41097_41586_-	single-stranded DNA-binding protein	Q1MVN2	Enterobacteria_phage	2.5e-87	98.8
WP_001345478.1\|41755_42313_+	lysozyme	Q71TF3	Escherichia_phage	4.2e-107	100.0
WP_169711503.1\|43617_45357_-\|portal	phage portal protein	Q1MVN6	Enterobacteria_phage	0.0e+00	99.6
44965:44981	attL	NA	NA	NA	NA
WP_169711505.1\|46679_52172_+	helicase	Q1MVN7	Enterobacteria_phage	0.0e+00	99.0
WP_000224043.1\|52205_52646_+	hypothetical protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
WP_000747846.1\|52642_52891_+	hypothetical protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
WP_016246528.1\|52973_53984_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_072104142.1\|54081_54834_-	hypothetical protein	Q71TG2	Escherichia_phage	1.1e-115	91.1
WP_012817933.1\|55316_55538_+	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	6.2e-30	80.8
WP_001260622.1\|55534_56650_+	phage antirepressor Ant	A0A077SLR9	Escherichia_phage	1.3e-192	93.3
WP_001224234.1\|56888_57200_-	hypothetical protein	A0A077SK03	Escherichia_phage	1.0e-46	100.0
WP_029396411.1\|57250_58282_-\|integrase	tyrosine-type recombinase/integrase	A0A077SLE7	Escherichia_phage	1.3e-194	100.0
WP_000542332.1\|58289_58511_-	hypothetical protein	A0A077SLI9	Escherichia_phage	3.4e-36	100.0
WP_032305379.1\|59115_59325_+	hypothetical protein	Q5XLQ8	Enterobacteria_phage	1.4e-31	98.6
WP_029401409.1\|59435_60287_+	hypothetical protein	A0A077SLM8	Escherichia_phage	2.3e-157	99.3
WP_000124150.1\|60311_61796_-\|terminase	terminase	Q71T61	Escherichia_phage	1.5e-292	100.0
WP_000219604.1\|61795_62989_-\|terminase	terminase	Q5QBP3	Enterobacteria_phage	5.7e-210	100.0
WP_032305380.1\|63075_63528_-	hypothetical protein	Q71T63	Escherichia_phage	3.3e-78	98.7
WP_000648833.1\|63616_64660_-	DUF968 domain-containing protein	A0A077SLM1	Escherichia_phage	1.1e-206	99.7
WP_000113018.1\|64687_64867_-	hypothetical protein	Q71TH5	Escherichia_phage	1.2e-23	98.3
WP_001216030.1\|64871_65252_-	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.9e-63	99.2
WP_001190712.1\|65251_65473_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_029401414.1\|65655_67212_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.1e-104	42.9
WP_029401415.1\|67208_68477_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_029401417.1\|68598_71715_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	8.3e-27	23.9
WP_029401419.1\|71979_72486_-	hypothetical protein	A0A077SK53	Escherichia_phage	1.6e-92	98.2
WP_029401421.1\|72558_73821_-	hypothetical protein	A0A1B0V7L1	Salmonella_phage	6.6e-233	99.0
WP_000684869.1\|74122_74824_-	hypothetical protein	Q71TJ0	Escherichia_phage	4.3e-141	97.0
WP_024262884.1\|74820_75498_-	metallophosphoesterase	Q71TJ1	Escherichia_phage	6.2e-129	96.4
WP_000484111.1\|75494_76121_-	norphogenetic protein	A0A077SK52	Escherichia_phage	1.0e-122	99.5
WP_032288828.1\|76018_76681_-	hypothetical protein	A0A077SL54	Escherichia_phage	5.9e-124	99.5
WP_000095380.1\|76622_76778_-	hypothetical protein	A0A077SK20	Escherichia_phage	1.2e-19	100.0
WP_029401427.1\|76844_77423_-	VRR-NUC domain-containing protein	A0A077SLK0	Escherichia_phage	1.3e-106	99.0
WP_000840930.1\|77425_77671_-	hypothetical protein	A0A1B0VDU5	Salmonella_phage	1.5e-40	100.0
WP_000235786.1\|77817_78195_+	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
WP_001141901.1\|78204_79422_+	hypothetical protein	A0A077SL53	Escherichia_phage	1.9e-224	99.8
WP_000896801.1\|79425_80154_+	hypothetical protein	A0A077SK19	Escherichia_phage	9.3e-139	100.0
WP_029401429.1\|80140_80926_+	hypothetical protein	A0A077SLJ8	Escherichia_phage	6.1e-144	98.9
WP_000212018.1\|80927_81944_+	hypothetical protein	A0A077SLQ1	Escherichia_phage	3.5e-192	100.0
WP_000535202.1\|81936_82569_+\|plate	baseplate protein	Q71TK2	Escherichia_phage	6.9e-90	100.0
WP_001198667.1\|82615_83614_-	hypothetical protein	A0A077SL52	Escherichia_phage	1.6e-194	99.7
WP_001276602.1\|83613_84978_-	replicative DNA helicase	O80281	Escherichia_phage	3.6e-253	99.6
WP_000234829.1\|85449_85614_-	DUF3927 family protein	A0A1B0VDU8	Salmonella_phage	1.2e-17	100.0
WP_000900640.1\|85613_86039_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.8e-70	100.0
WP_124842104.1\|87792_90057_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	68.4
WP_000472526.1\|90053_90959_-	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	4.5e-159	99.3
WP_001177860.1\|90951_91236_-	hypothetical protein	Q71TA2	Escherichia_phage	3.5e-49	100.0
WP_029401362.1\|91698_92487_+	hypothetical protein	A0A1B0V830	Salmonella_phage	2.4e-116	96.2
WP_001514466.1\|92526_92949_+	hypothetical protein	A0A1B0VCB0	Salmonella_phage	6.1e-58	99.3
WP_029401364.1\|93126_93519_+	hypothetical protein	Q1MVJ1	Enterobacteria_phage	2.0e-71	98.5
93493:93509	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP052877

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP052879

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP052881

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection