CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019929	Bordetella avium strain 14-4061 chromosome, complete genome	3 crisprs	csa3,DinG,DEDDh,RT	0	0	7	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019929_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019929_1

147995-148100

Orphan

Consensus_repeat	Method
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019929_1

>merge|NZ_CP019929|1|147995-148100|CRISPRCasFinder
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTGTCGCCTGCTTGCTGCCCCCCCGCCTTGGGGCGGCCCGGCGGCGGGTGTGTTGCCCCCTACGCTGCGCAGGCTTG

>NZ_CP019929|1|1|147995-148100|CRISPRCasFinder
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTG	TCGCCTGCTTGCTGCCCCCCCGCCTTGGGGCGGCCCGGCGGC
GGGTGTGTTGCCCCCTACGCTGCGCAGGCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019929.1\|WP_012415843.1\|143881_144877_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP019929.1\|WP_039051819.1\|152548_153475_+\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238557
NZ_CP019929.1\|WP_012415855.1\|154097_155015_+\|nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225125
NZ_CP019929.1\|WP_012415847.1\|147397_147937_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP019929.1\|WP_012415838.1\|139789_140437_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP019929.1\|WP_012415851.1\|150954_151668_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_CP019929.1\|WP_012415848.1\|148218_148683_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NZ_CP019929.1\|WP_012415844.1\|144937_145501_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
NZ_CP019929.1\|WP_012415852.1\|151664_152546_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP019929.1\|WP_012415846.1\|146036_147371_-\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NZ_CP019929.1\|WP_039051820.1\|153435_154101_+\|DUF1007-family-protein	unknown	unknown	gnl\|CDD\|368801
NZ_CP019929.1\|WP_012415856.1\|155110_157141_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NZ_CP019929.1\|WP_012415845.1\|145623_145929_+\|copper-binding-protein	unknown	unknown	gnl\|CDD\|378683
NZ_CP019929.1\|WP_012415850.1\|150239_150731_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP019929.1\|WP_119536725.1\|157134_158112_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP019929.1\|WP_012415849.1\|148801_149899_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NZ_CP019929.1\|WP_012415839.1\|140569_141829_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP019929.1\|WP_012415841.1\|142898_143171_+\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179360
NZ_CP019929.1\|WP_012415842.1\|143174_143828_+\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|172825
NZ_CP019929.1\|WP_012415840.1\|141980_142847_+\|D-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|238799

Protein	Function_ID	Function_description	E-value
NZ_CP019929.1\|WP_012415843.1\|143881_144877_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP019929.1\|WP_039051819.1\|152548_153475_+\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	3.63823e-130
NZ_CP019929.1\|WP_012415855.1\|154097_155015_+\|nickel/cobalt-transporter	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.53898e-54
NZ_CP019929.1\|WP_012415847.1\|147397_147937_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.2869e-127
NZ_CP019929.1\|WP_012415838.1\|139789_140437_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	5.11582e-55
NZ_CP019929.1\|WP_012415851.1\|150954_151668_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	2.63155e-81
NZ_CP019929.1\|WP_012415848.1\|148218_148683_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	1.3819e-48
NZ_CP019929.1\|WP_012415844.1\|144937_145501_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	4.47822e-77
NZ_CP019929.1\|WP_012415852.1\|151664_152546_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	3.23273e-55
NZ_CP019929.1\|WP_012415846.1\|146036_147371_-\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP019929.1\|WP_039051820.1\|153435_154101_+\|DUF1007-family-protein	gnl\|CDD\|368801	pfam06226, DUF1007, Protein of unknown function (DUF1007). Family of conserved bacterial proteins with unknown function.	3.48672e-60
NZ_CP019929.1\|WP_012415856.1\|155110_157141_+\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	2.02119e-47
NZ_CP019929.1\|WP_012415845.1\|145623_145929_+\|copper-binding-protein	gnl\|CDD\|378683	pfam11604, CusF_Ec, Copper binding periplasmic protein CusF. CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein.	5.42886e-21
NZ_CP019929.1\|WP_012415850.1\|150239_150731_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.09365e-40
NZ_CP019929.1\|WP_119536725.1\|157134_158112_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.6107e-139
NZ_CP019929.1\|WP_012415849.1\|148801_149899_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	5.79359e-122
NZ_CP019929.1\|WP_012415839.1\|140569_141829_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.23282e-153
NZ_CP019929.1\|WP_012415841.1\|142898_143171_+\|YbeD-family-protein	gnl\|CDD\|179360	PRK02047, PRK02047, hypothetical protein; Provisional.	1.41556e-59
NZ_CP019929.1\|WP_012415842.1\|143174_143828_+\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|172825	PRK14349, PRK14349, lipoyl(octanoyl) transferase LipB.	4.45849e-137
NZ_CP019929.1\|WP_012415840.1\|141980_142847_+\|D-amino-acid-aminotransferase	gnl\|CDD\|238799	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.	1.92675e-121

>NZ_CP019929.1|WP_012415847.1|147397_147937_-|ATP-dependent-protease-subunit-HslV
MEQFHATTIVCVRRGNRVALGGDGQVTLGNIVIKGTARKIRRLYHDKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVADAEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPETIVKQSLEIAGDLCIYTNQNHVIETLGG
>NZ_CP019929.1|WP_012415846.1|146036_147371_-|ATP-dependent-protease-ATPase-subunit-HslU
MSASTMTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVADPLRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEFSIKQTRELEMRRVRSHAEDAAEDRILDVLVPPARNAMGEPQRDDGNTTRQTFRKRLREGSLDDLEIEIDIAQATPQLDVMTPPGMEEMAEQLRGMFAGLARDKTKPKKIKVKEAFKLIIEEEAAKRVNEDDLRAAAIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHILFIASGAFHLSRPSDLIPELQGRFPIRVELDSLSADDFVRILSETDASLVKQYTALLATEDVQLAFTEDGIKRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDAGASSGQSVTIDAAYVDAQLSEAASSQDLARYVL
>NZ_CP019929.1|WP_012415845.1|145623_145929_+|copper-binding-protein
MAFLRKHTMPAVMATAAAFVSLASPQVLAQTAQASGEVRRIDATAGTVTLKHDAIAALDLPAMTLVYQAAPALLTNIKPGDKVRFTATRQDGRYVVTAISK
>NZ_CP019929.1|WP_012415844.1|144937_145501_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MANRLSVITTRTGDDGSTGLGDGSRVPKDDPRIMALGDVDEFNSTLGLLRCEALPDEVSADLLTIQHDLFDMGAELCIPGHAALSDEQVAYLDARLAFYNAALPPLREFILPGGTRAAALAHLARTAARRAERSVIALAAQAAVNAPLCQYLNRSSDLMFVLARYLNQSQGQADIYWSSRHSRVSGA
>NZ_CP019929.1|WP_012415843.1|143881_144877_+|lipoyl-synthase
MSTQLDASQPSNDVASPAAYDPTQKQKSQAKTARIPIKVIPAERLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDAQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVECITKIRELSPITRIEVLVPDFRGRLDRALAILNAGPPDVMNHNLETVPRLYKQARPGSDYLHSLKLLAEFKALHPDVPTKSGLMLGLGETDEEILEVMRDMRAHNVDMITIGQYLQPSEHHLPVLRYVHPDTFAMFEREAYAMGFSHAAVGAMVRSSYHADEQAHAAGVN
>NZ_CP019929.1|WP_012415842.1|143174_143828_+|lipoyl(octanoyl)-transferase-LipB
MSMNVAWLSPGAAYADVWEAMKAFTASRGPATPDEIWLCEHAPVYTLGQAGLPQHVLNPADIAVVRSDRGGQVTYHGPGQIVVYCLFDLRRAGMYVRDYVALLEETAIAVLGRAGIVAQRKPGAPGVYVEQPGQTLAKIAALGIKIRKGCAYHGLSLNVAMDLTPFHGINPCGYEGLQTTDMASCGLSCSVHEVGQALADELVRRLSAYQGSLSSGE
>NZ_CP019929.1|WP_012415841.1|142898_143171_+|YbeD-family-protein
MQIPPEDSLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPDFDPAKLEMRPSKGGNYLGLTFTVRATSREQLDALYRALHGHPMVSIVL
>NZ_CP019929.1|WP_012415840.1|141980_142847_+|D-amino-acid-aminotransferase
MIPGMPGDSLVYLNGEYTRADQAKISVLDRGFIFGDGIYEVVPAYRGKAFRITEHLNRLERSLAAIRIAMPMDRAALTALIERLIAGATTPECMVYLQVTRGVYKRDHAFPAEAIAPTVFGMVTPMTPPSALQREQGVSVVSIKDERWLHCDIKSVSLLGNVLARQQAVEADADEVIQYRDGYLTEGSSSNIWIVRDGKLLAPPKNNLILEGIRYGLMAELAQEGGVVFEARPISRAEVETADEILITSATKEVLPVLKRDGQVVGDGKPGPVYRLLRAGYDARIAAL
>NZ_CP019929.1|WP_012415839.1|140569_141829_+|D-alanyl-D-alanine-carboxypeptidase
MKTLSQSAFAPSVFSRRVISSAVLAVMLAASLPAAAQQQAPAAAAPATSTPAPATAAVATVGELAAVPAPTIAARAWIAIDVNSGQVLAASNPDQKVEPASLTKVMTAYVVFNALDEKRLTLDQQVPVSQHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSETAFAALMNEQAERLGMKGTHFMNATGLPDPQHITTVRDLATLATHLVSDHPEYYHYYKQKGFTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLISTALRGDRRVLTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDKSQPGLDARVWEGKAENVKLGPPNPVWLAVPRGKGNEIKPIAQRTDPLVAPLAKGQQVGTLEFTLDGKVLRTEPLVVQEDVERAGFFGRMTDTVKRWFH
>NZ_CP019929.1|WP_012415838.1|139789_140437_+|alpha/beta-hydrolase
MSARTEILAFSGAAGRIDCAFDYPDGEPIGWALVLHPHPLHGGARDNKVVTTIARACANAGLIVVRPNFRGVGDSEGGFDRAVGETEDMLGLIPQIRQTLPELADAPWVLGGFSFGTAVAAQVYAMLAEQGAAPQALMLMGPAVARFQFRAVELPEDTLVVHGEVDEVVPLAEAMDWARPLKLPVVVIPGASHFFHGKLLSLRNLVAQRLKLALG
>NZ_CP019929.1|WP_012415848.1|148218_148683_-|RNA-polymerase-binding-protein-DksA
MATKAVTKKSSKSTSDTAIDLPSEEELLAMPESDYMNERQLAFFKERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQAIVRIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD
>NZ_CP019929.1|WP_012415849.1|148801_149899_-|GTP-binding-protein
MNTPRSLDKMVPVTILTGFLGAGKTTLLKRILTEFHGRRVAVIENEFGPESIDNDLLVQDSDEEIIELSNGCVCCTVRGDLMRTLNELRVKREAGQLSFERVIIETTGMANPGPVCQTFFMDDDIADYYRLDAVVTVVDAKHGMATLDAQEEAQKQVGFADRILVSKRDLVNDADYEALRARLLRINPRAPITPVHFGEVELKSIIDISGFNLNSILDIDPDFLADEHPDAKHAHDHDHDHHDHEHAGECGAHCDHAHHHHHHQHNDEIGAFVFRSNKPFDPARLEEFLGGVVQVYGPDLMRYKGILYMKGINRRMLFQGVHMMMGAEPGKPWTAAEKPSTKMVFIGRKLPQEIFTRGLEQCLVG
>NZ_CP019929.1|WP_012415850.1|150239_150731_-|transcriptional-repressor
MSAPARTSRADAVGEQLRLAESLCAERGRRLTPIRRKVLELLLTHGRSLKAYELLDAMRAVHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWTACHDAAGAPHDLLVVCTGCGAVAEISDPAMSRLLAERVAQTGFALATHETEIRALCPQCQKNAPAAHHHH
>NZ_CP019929.1|WP_012415851.1|150954_151668_+|metal-ABC-transporter-ATP-binding-protein
MGHVVTPAAIELESVTFGWRGQPAVRDVSGRFAPGCMTAIIGPNGAGKSTLVKGLAGVLAPMSGRLHRDSTSVAWLPQAAELDRDFPICVLDAVVLGGWRRIGALRAVDGDETARARLALRRVGLEQLAERPLQALSGGQLQRVLFARLLMQDAPVLVLDEPFAAVDGQTTRVLMALLCALQAEGRSIIAVLHDMALVKEYFAQALLLSGRVLAWGPTADVLSPERLAHGQLHLGYA
>NZ_CP019929.1|WP_012415852.1|151664_152546_+|metal-ABC-transporter-permease
MTLWQALCAPFFDFSFMRRALAGAVALAFGAAPLGVFLVLRRMSLMGDAMSHAILPGVAAGYLLAGLSLGAMMAGGIVTGLVVALLSGLVTRLTSLREDASFAAFYLISLALGVLLVSLRGSNVDLLHVLFGTVLGLGDDALLLAGLVSTLTLFSLALIYRLLVAECFDPGFLRAAGGRGWLAHFGFLALVVINLVAGFQILGTLMVVGMMMLPALAARFWARRVAAQLPLAVVLAALASWCGLLASFHFDLAASPAIILAAGLIYLLSMVLGPQGGLRTRLRWPRPALSKEV
>NZ_CP019929.1|WP_039051819.1|152548_153475_+|metal-ABC-transporter-substrate-binding-protein
MKLVWARCAAIAVLSILPAVAVWASPVKVVTSFSILQDMAREIGGPDVEVQTLVGPDGDAHGFEPSAADSRKLAGADLLVINGLGFEPWLPRLVEASGFKGREVRASDGVKPRAFAEALDHEDHDHGHDHHHDVQDPHAWQDLRNGMIYAQNIGRALEQLDPAHAAQYQQRTRAYVAKLEALQAKVEKTFAAIPAERRKVVSTHDAFAYFGEAYGVRFIPVAGLSTLSEPSASGFAEVVKRVKREHVPALFIENIGNPRLAEQIARETGAKVGGTLYSDALSAPGKPGATYLGMFEWNVQQLAAALQP
>NZ_CP019929.1|WP_039051820.1|153435_154101_+|DUF1007-family-protein
MERAAIGRCLAALTLVILPISALAHPHMWVDAQAEVMFDDQGRVAALRQVWLFDEMFGAYATQGLPRAADGGLAEDTRKTMAIDWMKALGEPISHYFTRVTREGATLAFGAPRDAQVQWDGQRLSLAFTLPLAQPVAPGPQGLAIDVFDPTYFVAYAFDAPKAWRLSNAPANCRQTYRPPQPLDWKTMQQLAAIPSNVDTLPDELFAITKGLTHRNELRCP
>NZ_CP019929.1|WP_012415855.1|154097_155015_+|nickel/cobalt-transporter
MRSAARIVPWMLVFALALAAGQVWAQSHPFAVPEAGGSPWLAQISVWQSHFYRQLTGAVRAWRDDGSWLLVGLSFAYGVFHALGPGHGKAVISAFVLANHQSARNGAVLALLSALVQALVAIALVALLAAVFNVTAQVMNAGTRWLEMASYLMIVALGVWLLWTKALRPWLRPGRRHLHHAACGCGHVPPLSLMSGRLDWRRAWTAVVAVGLRPCSGALIVLVFALSQGLFAAGVVATLAMGLGTGLTVALLAMTAVWTRNALTNSSYLSPKWAARLRYGIESVAALAVLLLGLLLLGGQVAGAA
>NZ_CP019929.1|WP_012415856.1|155110_157141_+|TonB-dependent-receptor
MRFTSRPSHAALAMAFAAAPVFAAEPEAVTLTPITISADPLGQNQNSTASPVTVLDGQALVERRQGTLGDTLNGLPGVHSDTFGAGASRPVIRGQTSPRVSVLSDGSSLLDASAISPDHAITIEPLLADRIEVLRGPATLRFGGGSIGGVVNVLDKRIPTEKPEGGLAAEAELRGATGTKERAGIIGITAGTDSFVVRVEGLKRRSSDYAVPHWSSGKLAGSYSESTQGSVGMSWIGPRGYIGLAFTHIESEYGLPGHNHEYEGCHPHGTHLHCGHHDHDHDHDDHAHEEGQVPYVRLRSNRTDLRAEYSDPLPGFSKLRLRGGFTDYQHDEIEGGQVGTTFKNQGFDTRLELEHKPWMGLRGVIGLQTAFSDFRAQGEEAFLPRSKTRSNGLFLLEEYRLNDWRFEAGARQDWQSISPEGGLKKSRLSGTSLSAAAIWDFAPSYSVALSLSRSQRMPSAQELYADGVHLATNTYEIGNAGLTRETSRNIDLTLRKHEGDTTFSLSAFHNRVNNYIYANTLDRFEDFRLIEYTQKDAEFVGIEGELKHQFTPILSAGVFGDYVRGKLTGGQGNLPRIPAARLGARANFKWQAWSGGLEYAYVFRQKDIASYESETPGYALVNAVLSYRFKAAGAQYDVYVRGNNLLDKLAYNHASFLSSVAPLPGRSVMLGVRMSY
>NZ_CP019929.1|WP_119536725.1|157134_158112_-|tyrosine-recombinase-XerC
MSLLAPPLEDWLQHLQTQRRYSSHTLAAYRHDLESLAALATQAGLALQDLSVSHIRQQIARLHAQGLGPRSLARRLAAWRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAMLDHAPAQLSTDPVGLRDHAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLNRAEAEVVVLGKGGKRRIVPVGSAALAALDKWLQARPTLLSAATPAADSYALFLGARGARISPRVVQLQLARLAQQAGVPAHVHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDQAHPRANRKPEDNSDQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP019929_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019929_2

2061767-2061988

Orphan

Consensus_repeat	Method
AGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019929_2

>merge|NZ_CP019929|2|2061767-2061988|CRISPRCasFinder
GACGCGCGCCCTCGGGGGCAGCAAGCGCCCCGGGCGCACGCAGCGTGGGGGGCTTGCCCCGCCGCCGAGCCGTCCCGAGGCGGGCAGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTTGCCCCGCCGCCGGGCCGCCCCAAGGCGGGTAGCGCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT

>NZ_CP019929|2|2|2061767-2061988|CRISPRCasFinder
GACGCGCGCCCTCGGGGGCAGCAAGCGCCCCGGGCGCACGCAGCGTGGGGGGCT	TGCCCCGCCGCCGAGCCGTCCCGAGGCGGGCAGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTTGCCCCGCCGCCGGGCCGCCCCAAGGCGGG
TAGCGCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019929.1\|WP_012417663.1\|2049618_2049972_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|183670
NZ_CP019929.1\|WP_114851969.1\|2052698_2055626_-\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NZ_CP019929.1\|WP_012417670.1\|2058630_2059746_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277319
NZ_CP019929.1\|WP_114851967.1\|2063919_2065221_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP019929.1\|WP_127815067.1\|2070292_2071114_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP019929.1\|WP_114851965.1\|2066172_2067774_+\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_CP019929.1\|WP_012417665.1\|2050249_2050732_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NZ_CP019929.1\|WP_039052185.1\|2067844_2068333_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239828
NZ_CP019929.1\|WP_012417673.1\|2062046_2062676_+\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NZ_CP019929.1\|WP_012417674.1\|2062759_2063890_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235109
NZ_CP019929.1\|WP_012417666.1\|2050733_2052356_-\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NZ_CP019929.1\|WP_012417671.1\|2059786_2061088_-\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP019929.1\|WP_012417680.1\|2069232_2069673_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NZ_CP019929.1\|WP_012417672.1\|2061226_2061694_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP019929.1\|WP_012417681.1\|2069765_2070155_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211
NZ_CP019929.1\|WP_012417664.1\|2049968_2050250_-\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NZ_CP019929.1\|WP_127815066.1\|2068334_2069102_+\|NRDE-family-protein	unknown	unknown	gnl\|CDD\|377554
NZ_CP019929.1\|WP_114851968.1\|2056012_2058634_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|378817
NZ_CP019929.1\|WP_012417667.1\|2052352_2052697_-\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
NZ_CP019929.1\|WP_164855666.1\|2065382_2066144_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827

Protein	Function_ID	Function_description	E-value
NZ_CP019929.1\|WP_012417663.1\|2049618_2049972_-\|cation:proton-antiporter	gnl\|CDD\|183670	PRK12671, PRK12671, putative monovalent cation/H+ antiporter subunit G; Reviewed.	1.27927e-52
NZ_CP019929.1\|WP_114851969.1\|2052698_2055626_-\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP019929.1\|WP_012417670.1\|2058630_2059746_-\|metallophosphoesterase	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.5023e-32
NZ_CP019929.1\|WP_114851967.1\|2063919_2065221_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	5.62583e-104
NZ_CP019929.1\|WP_127815067.1\|2070292_2071114_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.4633e-10
NZ_CP019929.1\|WP_114851965.1\|2066172_2067774_+\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	3.06994e-162
NZ_CP019929.1\|WP_012417665.1\|2050249_2050732_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	1.29263e-57
NZ_CP019929.1\|WP_039052185.1\|2067844_2068333_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239828	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	1.24304e-77
NZ_CP019929.1\|WP_012417673.1\|2062046_2062676_+\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	4.07046e-27
NZ_CP019929.1\|WP_012417674.1\|2062759_2063890_+\|hypothetical-protein	gnl\|CDD\|235109	PRK03187, tgl, transglutaminase; Provisional.	1.17046e-08
NZ_CP019929.1\|WP_012417666.1\|2050733_2052356_-\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP019929.1\|WP_012417671.1\|2059786_2061088_-\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP019929.1\|WP_012417680.1\|2069232_2069673_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.00316822
NZ_CP019929.1\|WP_012417672.1\|2061226_2061694_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.09021e-63
NZ_CP019929.1\|WP_012417681.1\|2069765_2070155_-\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	2.66067e-15
NZ_CP019929.1\|WP_012417664.1\|2049968_2050250_-\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	1.13843e-36
NZ_CP019929.1\|WP_127815066.1\|2068334_2069102_+\|NRDE-family-protein	gnl\|CDD\|377554	pfam05742, TANGO2, Transport and Golgi organisation 2. In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation. In plants this family includes Solanum habrochaites Cwp, which is involved in water permeability in the cuticles of fruit. Mouse Tango2 has been found to be expressed during early embryogenesis in mice. This protein contains a conserved NRDE motif. This gene has been characterized in Drosophila melanogaster and named as transport and Golgi organisation 2, hence the name Tango2.	4.09667e-82
NZ_CP019929.1\|WP_114851968.1\|2056012_2058634_-\|AAA-family-ATPase	gnl\|CDD\|378817	pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.	7.21099e-13
NZ_CP019929.1\|WP_012417667.1\|2052352_2052697_-\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	1.73102e-70
NZ_CP019929.1\|WP_164855666.1\|2065382_2066144_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	4.33362e-87

>NZ_CP019929.1|WP_012417672.1|2061226_2061694_+|winged-helix-turn-helix-transcriptional-regulator
MRELDRTDRKILDILQRNGRISITELAEQVNLSATPCSERVKRLERDGVIAGYHARLNPVALGKNLLVFLEIRLSAKSGDVFDKVKKELMYVPEVMECHLVSGDFDYLVKARLTEMAEYRRLLGEILKRLPASAESHSYVVMEEIKESLYLPLDP
>NZ_CP019929.1|WP_012417671.1|2059786_2061088_-|D-amino-acid-dehydrogenase
MHIIVLGSGVIGTTTAFYLARQGAQVTVLDRQPGPADETSYANAGQVSPGYSTPWAAPGIPLKALKWLFQKHAPLALRADGSLWQWRWMAAMLANCTADRYTVNKERMLRLAEYSRDCLRELRDSTGIQYEQRTQGTLQLFRTEAQLEAARRDIAVLEEVGVPYEVLDRDALPGAEPALARSLHKLAGGLRLPNDETGDCRLFTRALAEAAANLGARFHFNQAVEGMVLENGRVTGVRVGGEPMQADAYVAAFGSYTRGFLGPLGLDLPVYPVKGYSLTIPMRDAQASPVSTVLDETYKIAITRFDQRIRVGGMAELAGFDLTLRPQRRATLEMVVQDLFPGCGDVAAAEFWTGLRPMTPDSTPIVGATRYDNLFLNTGHGTLGWTMACGSGKLMADIVMGHQPAIRADDLALSRYQGKASPAGGLDLKQGRA
>NZ_CP019929.1|WP_012417670.1|2058630_2059746_-|metallophosphoesterase
MSSRPPSFLHTADWQIGRQYGQFDDDDAAVLAEARLEAVARLAAIARERGVCAVLVAGDVFDTQAVSDRLIRRLFGALEGYAGPWVMIPGNHDAALAESVWTRARKLACIPANVHLALEPGVVLLPELAVLAAPLTQRHTYDDVTRGFDSLETPAGLPRVGLAHGSVTGRLPDSADAANPIAPDRADTARLDYLALGDWHGCLRVTDRCWYAGTPETDRFRGNEPGYALHVRLGGAQPEVEAVRVGRYRWQAWDVDLELPADAEMLEARLQTLQADDVLRLTLRGRVSLAAWERLTQSIGRAEAHLRALRLEPDALSLEPDDADFSLLDGGGYLSDVAARLRAMQADPQTAPVAREAMQLLLRMAREEGGA
>NZ_CP019929.1|WP_114851968.1|2056012_2058634_-|AAA-family-ATPase
MRLHRIALQEFRKFREPVVLDGLDAGLNIIAGPNEAGKSTYAMALRAAFLERYNTSKVADLAPYGMAGARPTVCIEFEHGGRHYALQKHFLHKARCELRIDGSRLEGEEAEQTLARLLGFEIPGRGQSKPEHAGVPGLLWITQGSGQDIAEPARHADGQVREALTQISGELASTDGDRLFAQVQEARAALLDARGGKPKGVYKAAEEAYVRLGEAREALLRERAELDADVDRLAQWRAEYERAEREAPWVALEQQAAQARAQLQALAIEQERVQRLRQEANEAARLAQALRDQAARDRRDEEELRHLHAQSQAAARELAQHNDTGARMAQARVHAEAALQSARAALEAVQEQQRLRQARDWLRQACAEEERLGAALAAVQTGESQVAALLAEWQEVRIDAQAVTALRQLQREEEALRLRLEAGATRIRHLLDAGVSLSLGQQMLQGEGETLLAEAAELSLPGLGRLIIEPGGQDLPALRRERAEVQARLEQGLTALAAGSLAQAEARLAHATQLERELAQAKQALHALAPQGGAALQAALAQARQTRERLQAQLHGADLGGEADLDARLPAAKDAVQRTTAAAQAAERQAREADAGQAQASSRAALLQEQYQSRQSAFDDAAQAARRALRAAQFAQAEQTEQERALQAREAESALAAHRPELLKQDAERYARSAELARQAQQERHARLLSLQGKLEQAGAQAVGERLAETEAAWQRAGRLRADYERRAAALDLLWRLLGEQRDTATRRLLRPLSERLAHYLALLFPGADLSLDEQLQPLALVRGGTHDALEALSFGTREQLGLLARLAYADLLREAGRPTLLVLDDALVHADSRRRDLVKRALFDAATRHQILLFTCHADAWQDMGVVLRELP
>NZ_CP019929.1|WP_114851969.1|2052698_2055626_-|monovalent-cation/H+-antiporter-subunit-A
MSLILILALPFVGSLCAALLPANARNAEAWLAGLVALGSTLLVASLYPQIAAGEVIRVDIPWAPALGLQFALRMDGFAWLFSLIVSLIGTLVVLYARYYMSPQDPVPRFFSFFQAFMAAMLGVVLSGNLIQLVLFWEMTSLASFMLIAYWHHRADARRGARMALTVTGAGGLCLLGGVLLLGHIVGSYDMDVVLRAGDIVRAHPWYPAALALVALGALTKSAQFPFQFWLPNAMAAPTPVSAYLHSATMVKAGVFLLARFWPLLAGTDAWFWIIGGAGLISLVLGAYAAIFQQDMKGVLAYSTISHLGLITLLLGLNSPLALVAAVFHMVNHAIFKASLFMAAGIVDHETGTRDISRLSGLYSAMPLTATMAMVAAASMAGVPLLNGFLSKEMFFAETTFITGDRFLEYGLPLMATIAGAFSVAYSLRFIVQVFFGPPATDLPRAPHEPPRWMLLPSALLVLLCLVIGVLPGLTVGPVLHIAAQSILGPGMPQFSLAVWHGFNLPLVMSLVAMSAGVLLYLVLRAHQAANPGKVPFIYRLDGRRTFEYLLEVSAMGARWLLRRASSPRLQVQMLVIVSATLLVAWMPLRVSGWLDGMGPRTPADPVFLILWLAGGACALGAAYQAKYHRLASLTLSGGAGIVTCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIVSESDDERPDWKARARRTRDLGLAALAGISMSAITYAMLTRPVGDTISSFFVEQALPEGGGTNVVNVLLVDFRGFDTLGEITVLGIVALTVYALLRRFRPAQESIEMPRQQREQDGLEPGQPPASPDVKAPLPQGVMRIPAVLVRLLLPVAVLISVYLLLRGHNLPGGGFVGGLVMATSVILQYMVGGVYWVESRSRLNPQRWVGLGLLAAGAAAMSSWFALRPFMSALAWDVHVPLIGEVHLSSVLLFDLGVYMLVVGATVLVLVALAHQSLRAQRKLVSEAQAEAEAAMKGV
>NZ_CP019929.1|WP_012417667.1|2052352_2052697_-|Na+/H+-antiporter-subunit-C
MEWIYAVAVGVLVGSGVWLLLRPRTFQVIMGLSLISYAVNLFIFGMGRLTVGRPPVVDPLAPPDPGAYADPLPQALVLTAIVIGFATTALFLVVLLASRGFRGTDHVDGREPES
>NZ_CP019929.1|WP_012417666.1|2050733_2052356_-|monovalent-cation/H+-antiporter-subunit-D
MIDWQQHLPIYPIAVPLVAGALMLLLADTRRRERAFIAVASTLVQLLSAIALLALAAGAYDIWPDGIGVYLPGDWPAPFGIVLVVDRLAAIMLTLTATLGLATLVYSLARWDRAGVHFHSLFQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLLLHGSGGARVSAGLQYIAVNLVASFLLLISIALIYGVTGTLNMADLAVRAGQLVGSDRRLFEAGAAILGVAFLVKAGAWPLNFWLVSGYGSACPPVAAMFSIMTKVGIYSLLRIGSLLLPTGAPAAFSLDWMFAVGLATLIFGGVGILASQQLEKLVGYCVIVSAGTLLTALGMPGVTLTGPALFYLISSVLGTSAFFLLVELIERTRSFGANVLAVTMDNFDLDDPASRSDDVVGVAIPAAMAFLGLAFVACALLVTGLPPLSGFVAKFSLLSAAVSAANTSAPPMDAWLLVAGVLLSGLAGLIALGRTGIRVFWSSEDRSTPRLRLLEAGPVAVLILLCVALAAGAGPVSAYLDAAAQSLDAPADYVNAVLSKQPVRVLGGGH
>NZ_CP019929.1|WP_012417665.1|2050249_2050732_-|Na+/H+-antiporter-subunit-E
MRDVFSKMLLPLGMFFLWLLLNQSLSLGQIAFGAALAIWLGWASTRLRPLKSRPRRFYLLPGLFCRVLIDIIRSNWAVTLLIWRPRAEMSPGFLTIPLTMRDPHGIAMLACILTYTPGTVLVDISDSKGLTLHVLDLQNEDEWVALVKGRYERTLMEVFE
>NZ_CP019929.1|WP_012417664.1|2049968_2050250_-|K+/H+-antiporter-subunit-F
MDVLLYWSASFALICFAVGLGCAVIRVLRGPTAQDRVLGLDAVYIQAMLIMLVFGIRVGTGVYFDIALLIALFGFVGSTAMAKFLLRGEVIEP
>NZ_CP019929.1|WP_012417663.1|2049618_2049972_-|cation:proton-antiporter
MIPADIPWWIAVPASLLLIAGGMLALTGAVGLLRFGHFYARIHAPTLANTLGACSVLLASMLVFSYQASRPVFHEVVIVILLVLTSPVTGMLLMRAAVYRNRDAEVGPNSPHNSSEP
>NZ_CP019929.1|WP_012417673.1|2062046_2062676_+|DUF502-domain-containing-protein
MTRRLYRYFFLGLITILPIALTLYLLFVFLAWTEAIALTFVRPFIGDFYIPGLGLLLGILVILAIGYLVSKERVQRLLLLVEMPFTNLPVIKSIYSSIKSFADYFSSGSKATSQQVVILRIPGQALELVGLVTRRGMEGLPAGFLPGERVAVYLPMGYMIGGYTVFVPTEWVVPINMSVEEAMRSSLIAWMARAEHQTPPTPPHTDQPS
>NZ_CP019929.1|WP_012417674.1|2062759_2063890_+|hypothetical-protein
MQHNDVSSFRDAGGIRIFPSSPAALSQAQAFLYSRDLQAYATSRLAPDGAVCIQALPDFARQHLPQGDTTGLVHDLKLDTAGSDAALETEIVLAMLACPVAFPFPDVAELEAALRIRRNIVRAATRTALAFDTEKAERPADYWAYDEATGFTIVPGRSLIDGLTLATQPQVSGQTYSFSCYRATEYVTVLGIALEVRDSHPALYTRLQRQWETRAVMSGRFHEAFLREYGSMDAPLPPRFYVPGDRLWFRNPDAHSSNVEGYEGSWVFYLGSGLFNNFWKRDQPYTLTHKCLEIFHWRDGAQVDAGGKLFINEDIVEARVRETQADPAARQAVLERMLRIRDPQGVYAEGGCIDATRECARWVLPGHAEIALPEFP
>NZ_CP019929.1|WP_114851967.1|2063919_2065221_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MSNLIVHGGTPLSGKIVPSANKNAVLPILCATLLTDQPLRLIGVPEITDVKKILDIFRMLGSEVSVDYATGVLELHHRDTCFDPAQHHLPEEMRSSIMLVPPLLARFGVARLENDVKGCTLGVREIDPHVEVFERFGARVERAPDSLIARADGQMRANQHWLDYASVTTTENFALCAASAAGVSTLVNAASEPHVQEFCRFLEMLGVPIEGIGTSHLRIEGGRKLKGGEFRFDEDFHEIATFLALGAITGGSIIVKNSAPAQFPLIDRTFAKFGVEVEHRDGWSQAHSDGPLRVRRPFTQNILTKVEAAPWPYLPVDLLPIFIALGVRAEGSAMFWNKVYDGAMGWSVELSKFGAHVFLSDPHRLITFGGLPLSPAKVESPYIIRVAIALLMLAASIEGRSEITNALPIRRAHPNFVENLCSVGARVEWTHGD
>NZ_CP019929.1|WP_164855666.1|2065382_2066144_+|DeoR-family-transcriptional-regulator
MTLNPRQSALLEQVRSQGSASIEELARAFDVTLQTVRRDVNLLAEAGMLSRFHGGVRSEPSTIENITYRQRQGLHAEGKRRIAEAVARQVPDGCSLLINIGTTTEAIARALLQHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGITGEATIDFIRQFKVDIGLIGISGIEADGTLRDYDFREVLVARTIIEQSREVWLAADSSKFQRQAMVELAPISRISRFFTDAEPAPQLAQVLHDAGVHVSVS
>NZ_CP019929.1|WP_114851965.1|2066172_2067774_+|glycerol-3-phosphate-dehydrogenase/oxidase
MNSTTSAAMPPRADLLARMDAADSWDVIVIGGGATGLGTAVDAAARGFRTLLIEAADFAKGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLSRNAPHLAWPLGFVVPAYTLLDQPFYGIGLKMYDLLAGKLNLASSRLLSRIETLRHASTLAPVVQGKRLRGGVLYYDGQFDDARLAVALMRTLFDLGGTAVNYVRVTGLTRDAQGKIDGVETEDTLSGARHTLHAKCVVNATGVWVDAVRRMDDPAAQAIVSPSQGVHLTLPRDFLPGDDAILVPKTDDGRVLFMVPWNGHTIVGTTDTARQDLPTDPRPLPGEVDFILETAGRYLTRQPTRADVTSVWAGLRPLVKASGDASTKSLSREHTILVAQSGLITVTGGKWTTYRRMAQDVVDTAIEKRLLPQAACRSAELPLHGAPAPGAGLLAPQGTPDSYYGTDLPVLRALPGADRILVQASGLSEAHVRYAARYELARTVEDVLARRNRALFLDAAAAQAAAPEVARILAEELGHDADWQTRTLADFQAIAESFKLA
>NZ_CP019929.1|WP_039052185.1|2067844_2068333_+|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein
MDVFQQLQNLLSAQAADFRLLRHPAAGKSVEVAAIRGTEVSQGAKALVCRVKISAKQRKHVLAVFPADGQADLDAIALAAGGKKAALATHELARELTGCEIGAIPPFSFNTELHLIVDPSLRQRHDEIVFNAGRLDASIIMRTEDYFRIAQPELARFVRTAD
>NZ_CP019929.1|WP_127815066.1|2068334_2069102_+|NRDE-family-protein
MCLAVLALNALPGLPVLIAANRDEFHARPAAPAAAWPSGIYAGRDLLAGGTWMGAARNGHYAILTNYREVGRHLPDAPSRGKLAEHFLAGDLPARDYIASVAREGGRYNGFNLIVGDRQDAWYYGNRGGEPRLLKDELYALSNHLLDSPWPKSLRLKHAVRQTFEHGLDLPALFAALGDRTVAEDASLPDTGLPRERERLLSSPFIVSADYGTRCSTVLLWRANGQGELVERRFDSAARLTGETALHFHLPGTVS
>NZ_CP019929.1|WP_012417680.1|2069232_2069673_+|carboxypeptidase-regulatory-like-domain-containing-protein
MKKIHERSLLAALLMAGAMTVSGAALAQDLPLLPQTQQQGDVQFLSGGIGDGQSGAIKAAASKYRLMLTFVQRGPGGVGEYLADIPVDIVNAKGQSVLKTVAQGPFLLANLPAGSYTVKASSNGAEKSTRVTIGKSGTARAIFEWR
>NZ_CP019929.1|WP_012417681.1|2069765_2070155_-|MAPEG-family-protein
MIHIVALMVAAALLPLVASISSKLGGEGFDNREPRLWLQAQKGWRARANAAQANSYEALPFFYAAVLFALYAQAPLAHLAVLMGAWVTVRLVYLALYVGGYGSLRSLSWVAAFALNLLILYAGLQAAGG
>NZ_CP019929.1|WP_127815067.1|2070292_2071114_+|CPBP-family-intramembrane-metalloprotease
MTDSLTWIFIFCAYALLWWPAARKAGLALLICGLGLAAALSALTLPSLLAFALLIASGWLVRGTRQAWLGHLIFIITAIALALHLLPGFHNPLIIDSTALKPGSTPMRLYFNLDKPLIAWWVLLVMAPPFLRFGWQDSLRTGLQAGIAAAICCLGLAWVLGALAWSPGWPSQGWPWLLNNALLVTMAEEAFFRAYIQRGLALRLGPAPACLLAALLFGLAHFAGGPALIGLAALAGLFYGWAFHRGGLAAAVLAHLLLNTLHLALFSYPALAH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP019929_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019929_3

3559389-3559610

Orphan

Consensus_repeat	Method
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019929_3

>merge|NZ_CP019929|3|3559389-3559610|CRISPRCasFinder
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCGGGGGGCAGCAAGCAGGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCAGAGAACAGCAAGCAAGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC

>NZ_CP019929|3|3|3559389-3559610|CRISPRCasFinder
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	GGGGGGCAGCAAGCAGGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCAGAGAACAGCAAGCAAGCGACAAGCCTGCG
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019929.1\|WP_012418822.1\|3563929_3564784_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP019929.1\|WP_012418813.1\|3553764_3554649_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP019929.1\|WP_012418809.1\|3549091_3550144_+\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NZ_CP019929.1\|WP_012418819.1\|3560500_3561283_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP019929.1\|WP_012418814.1\|3554733_3555777_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP019929.1\|WP_049794180.1\|3553223_3553784_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP019929.1\|WP_012418824.1\|3566113_3566725_-\|methionine-biosynthesis-protein-MetW	unknown	unknown	gnl\|CDD\|273958
NZ_CP019929.1\|WP_039051319.1\|3568380_3569967_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP019929.1\|WP_039051316.1\|3547590_3549081_+\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NZ_CP019929.1\|WP_012418825.1\|3566721_3567969_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP019929.1\|WP_012418816.1\|3556316_3557849_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP019929.1\|WP_012418818.1\|3559739_3560402_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP019929.1\|WP_012418815.1\|3556004_3556313_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP019929.1\|WP_012418820.1\|3561774_3563112_+\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NZ_CP019929.1\|WP_012418827.1\|3570000_3570519_+\|lipocalin-family-protein	unknown	unknown	gnl\|CDD\|381213
NZ_CP019929.1\|WP_039051317.1\|3563163_3563802_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP019929.1\|WP_012418811.1\|3551313_3553212_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP019929.1\|WP_012418817.1\|3557851_3559309_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP019929.1\|WP_012418810.1\|3550180_3551317_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP019929.1\|WP_086935808.1\|3564785_3566018_-\|muropeptide-transporter	unknown	unknown	gnl\|CDD\|183369

Protein	Function_ID	Function_description	E-value
NZ_CP019929.1\|WP_012418822.1\|3563929_3564784_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	1.47285e-26
NZ_CP019929.1\|WP_012418813.1\|3553764_3554649_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	8.29804e-92
NZ_CP019929.1\|WP_012418809.1\|3549091_3550144_+\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	1.36949e-114
NZ_CP019929.1\|WP_012418819.1\|3560500_3561283_-\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	1.37289e-138
NZ_CP019929.1\|WP_012418814.1\|3554733_3555777_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP019929.1\|WP_049794180.1\|3553223_3553784_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.98743e-19
NZ_CP019929.1\|WP_012418824.1\|3566113_3566725_-\|methionine-biosynthesis-protein-MetW	gnl\|CDD\|273958	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. [Amino acid biosynthesis, Aspartate family].	6.65817e-109
NZ_CP019929.1\|WP_039051319.1\|3568380_3569967_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP019929.1\|WP_039051316.1\|3547590_3549081_+\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.5303e-116
NZ_CP019929.1\|WP_012418825.1\|3566721_3567969_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP019929.1\|WP_012418816.1\|3556316_3557849_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP019929.1\|WP_012418818.1\|3559739_3560402_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.96785e-83
NZ_CP019929.1\|WP_012418815.1\|3556004_3556313_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.36957e-31
NZ_CP019929.1\|WP_012418820.1\|3561774_3563112_+\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_CP019929.1\|WP_012418827.1\|3570000_3570519_+\|lipocalin-family-protein	gnl\|CDD\|381213	cd19438, lipocalin_Blc-like, bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins. Escherichia coli bacterial lipocalin (Blc, also known as YjeL) is an outer membrane lipoprotein involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Blc has a binding preference for lysophospholipids. This group includes eukaryotic lipocalins such as Arabidopsis thaliana temperature-induced lipocalin-1 (TIL) which is involved in thermotolerance, oxidative, salt, drought and high light stress tolerance, and is needed for seed longevity by ensuring polyunsaturated lipids integrity. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	2.27722e-75
NZ_CP019929.1\|WP_039051317.1\|3563163_3563802_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.85822e-75
NZ_CP019929.1\|WP_012418811.1\|3551313_3553212_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP019929.1\|WP_012418817.1\|3557851_3559309_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP019929.1\|WP_012418810.1\|3550180_3551317_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	2.39417e-155
NZ_CP019929.1\|WP_086935808.1\|3564785_3566018_-\|muropeptide-transporter	gnl\|CDD\|183369	PRK11902, ampG, muropeptide transporter; Reviewed.	0

>NZ_CP019929.1|WP_012418817.1|3557851_3559309_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MEWEIVIGLETHVQLATESKIFSGSSTRFGAAPNTQANEVDLALPGSLPVMNRGAAERAILFGLAIGAKIAPRSVFARKNYFYPDLPKGYQISQYELPVVVGGTLSFFVGEEEKTINLTRAHLEEDAGKSLHDEFHLANGAPASGIDLNRAGTPLLEIVTEPEMRSAAEAVAYARALHGLVVWLGICDGNMQEGSFRCDANVSVRPRGQVEFGTRAEIKNVNSFRFLERAIQYEVRRQIELIEDGGKVVQETRLYDAERDETRSMRSKEDAHDYRYFPDPDLPTLVIGQDWVEAVRATMPELPSAMRARFEADFGLPAYDAAQLTISRKLAAYFEAVARALPAGQAKLAANWIMGEVTATLNREEKDIADTPVQAAQLAALINRIIDGTISNKIARDVFAAMWAGENGGEPDAIIEARGLKQISDTGTISAMIDEVLAANPAIVAEYRAGKEKAFNSLVGQIMKAARGKANPQQVNDLLKAKLSA
>NZ_CP019929.1|WP_012418816.1|3556316_3557849_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSQSALHTEFGDIAGLRAALAERRVSAVELAESGLAAAQAAAGLNAFLHIDPELTLVQARAADAALAAGTAGPLAGIPIAHKDAFVTRGWRSTAGSKMLRDYLSPFDATVVERLQAAGAVSLGKLNCDEFAMGSGNENSAFGPARNPWDLAAVPGGSSGGSAAAVAARLVAGATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAGPLAPSSRDLLELLDVMSGFDPRDATSLERCDDAANAPGRIRAAFDAAQNGYQAAGSQPLKGLRIGVPAEFFGAGLTPDVAAAVEAALRQFEALGAERVAISLPRTELAIPAYYVIAPAEASSNLARFDGVRYGHRAAEYSDLNEMISRSRAEGFGDEVKRRILIGAYVLSHGYYDAYYLQAQRLRRLIAQDFQRAFAGQCDVIMGPVAPSVAKNIGENRDDPTADWLADVYTLGVSLAGLPAMSVPCGFGAAGRPVGLQIIGNYFDEGRLLAIADRYQQVTDWHQRTPATQDA
>NZ_CP019929.1|WP_012418815.1|3556004_3556313_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MALNQQDVARIARLARIELTPEQQSRAQDELNGILHLIERLQAVDTQGVEPLAHPLSAHEDIPLRLRQDAVTETASAERRAELLANAPEQSAGLFLVPKVIE
>NZ_CP019929.1|WP_012418814.1|3554733_3555777_-|rod-shape-determining-protein
MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEGGPNGKKVIQAVGQEAKQMLGRVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHPRNMLAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDASGSMVVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKQIGSAFPGSEVREIEVKGRNLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPPELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVADDPLTCVVRGCGEALEHLEKLGAIFIND
>NZ_CP019929.1|WP_012418813.1|3553764_3554649_-|rod-shape-determining-protein-MreC
MQRQGTPPLFRRGPPAEVRLVILVALALALIVVDSQLRILEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAANLVRSENEALQRQRIELSQVATHAVQLAAENAQLRRLLGVTDTVGQPATVVEVLYEPPNAFHPRLVFNKGSKAGIAPGMPVIDEGGVVGQIVRVTPMTAEAAMVTDERVSIPVQVLRNGLRLIAFGGHTPGTIDVRYLAANADIKPGDTIVTSGVGGLFPAGLPVAKISSVERDTASGFARAIAEPLAHPERYRHFLVLQVDVAKAEANQEEADGGTTQ
>NZ_CP019929.1|WP_049794180.1|3553223_3553784_-|rod-shape-determining-protein-MreD
MVAPRNNAAQRRLGTPSNVHPERLMRPARGFFVWGTLLLVWLLSLLPWRQWPASPDILLLVIAFWSAYEPRRVGMFTAFIFGLLLDVHDASLLGGHALTFTLVAYGALALHRRLQRFDLWSQAMHMLPVFFLSQLLTQIIMAWLAGRWAGWDWAYGVLLTTALWPVFGWVLQLPQRLHDDVESSAS
>NZ_CP019929.1|WP_012418811.1|3551313_3553212_-|penicillin-binding-protein-2
MFEFKKTSQQQKQRFRLRAWVGGLFALACFGVLIGRFWYLQVDRYEGFSERADRNRIAVQPIPPRRGEVLDRNGVVLARNYRTYTLEVVPARAGPVDELFARLTPVVYISPADQRRFKRRVSESGRYANLVLRNNLNETEAAWFSAHAFEFPGVELRARWVREYPQGEAAAHVVGYIGRIAENDLEDLEKSGQLGNYRGTDVIGKKGIEKTWEQALHGRTGLEEVEVTAGGRPVRTLRRIDPVPGSDIMLSIDLGLQRVAEKAFEGHRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLSGTYPIGSTYKPFVGLAALELGKRRATDRLPDPGYYEFGGQKFRNAGGAVFGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGERAGVLPSTDWKRRAYKDRERQRWYAGETISVAVGQGYNAFTLLQLAQGTSTLANNGLYRRPHLVHAVRDSRTGELTATPSTPDYRIPLKQANIDVIKSAMADVVRSGTARRAFANTAYQAAGKTGTAQVFSLRGGQYRAAALDERLRDHALFMGFAPVEHPRIAVALIVENAGWGASVAAPIAREVFDYWLTPKREDKIVRPQQVAAGEKAQ
>NZ_CP019929.1|WP_012418810.1|3550180_3551317_-|rod-shape-determining-protein-RodA
MKRIGLVLLRVFTAFDWPLLLVLVLFAALGLTVMHSAVGSTDWRFAEQARNFTIAFFAMWIVALVSPQTLMKLALPFYILGVVLLLGVEFVGETSKGATRWLNLGFTRIQPSEMMKIAVPMMLAWYFQRHEGQVRVRDFLVAVLMLGLPFGLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLIPAVLIGVIGIGTLVYYEDQLCEPDVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLLIARGLAIASRSVSQFGRLLAGSMTMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGVAFGIMMSISRAKPVKA
>NZ_CP019929.1|WP_012418809.1|3549091_3550144_+|Ldh-family-oxidoreductase
MKIAIPDAIAYGEALLVAQGVPQDIAFDVAEHLVESDRVGYTSHGLSILPNYARVLKEGFLQADGRLQLLTDNGGFLAYDGNNGFGQHVGKMAVQAAIERTTQQGSCVLTLRRSHHLGRMGYYGEMAASAGFILLAFTNVINRAPTVAPFGGARACLTTNPLCFAGPLPGGRPPLIVDMATSSIAVNKARVLATNGEQAPPGSLIDAEGNPTTDPNALFTNPPGALLPFGGHKGYAMGVVAELLAGVLSGGGTIQPENPRQGVATNNMFAVLLDPQVDFNASWRSHEVAAFIDYLHDCPPQPGVDGVQYPGEYEAANRARNGDAISFAPAIWHKLAELGQKLGVSAPAAA
>NZ_CP019929.1|WP_039051316.1|3547590_3549081_+|DASS-family-sodium-coupled-anion-symporter
MTAQAAVPAPQAPKKKIPIGLVAGFIALILVLLIPTPAELPVAGHRMLAILVFAVVVWITEAVSYEASAIMVTTLMAFLLGTAPSIKNPDVLIGTSAAITMALQGFANSALALVAGALFIAAAMTFTGLDRRIALVTLSLIGTTTRRILIGAIAVTIVLSLVVPSATARSAAVVPIMMGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVSWAEWLIAGAPWAIIMSVILILIVLKMLPPESNEIAGGKEAVERELREMGPMTPPQKRLLAVSIFLLMCWSTEKVLHNFDTTSTTYLGLVLLMLPRFGVMTWKDVQSRIPWGTVIVFGVGISLGSALLSTQAGQWLGNQVVTHTGLDNLGPLSIFAILGAFLILIHLGFASATALTSAMLPILISVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVCLGTETFTARQFAKVGILITIIGFALMIVMGMTYWRWLGLL
>NZ_CP019929.1|WP_012418818.1|3559739_3560402_-|orotate-phosphoribosyltransferase
MSNTATDFVRFALDEGVLRFGSFKVKSGRMSPYFFNAGLFNSGRSVGKLAAFYAQALLDSGLNFDMLFGPAYKGIPLATATAVALAGHPQASGDIPFAYNRKEAKDHGEGGTLVGAPLAGRVVIIDDVITAGTSVRESVEIIRAAGAQPAAVLIAMDRMERAGPDEALSPHSAVQDVAKTYGIPVISIASLADILQLLQDDEQFAAHRDSVLAYREQYGV
>NZ_CP019929.1|WP_012418819.1|3560500_3561283_-|exodeoxyribonuclease-III
MLRVISANLNGIRSANTKGFFDWLHQQNADFVCVQELKAQEADLSPAMKAPAPLQGYFHYAEKKGYSGVGIYTPHEPESVVIGLGVPDIDAEGRYIELVYPKLSVVSVYLPSGSSGDHRQTAKYRFMEHFYRHLADLIGRGREVVICGDWNIAHKEADLKNWKGNLKNSGFLPEERAWLTQVFDELKWVDVYRRLAPDATGEGYTWWSNRGQAWAKNVGWRIDYHIASGALAATAQQAAIYKDVRFSDHAPLTIDYDFSL
>NZ_CP019929.1|WP_012418820.1|3561774_3563112_+|NADP-specific-glutamate-dehydrogenase
MQSLNDFLGRVASRDPHQPEFMQAVQEVMGSLWPFIEKNPSYGQQALLERLVEPERVIQFRVCWTDDQGRAQVNRAFRIQHNSAIGPFKGGMRFHPSVNLSVLKFLAFEQTLKNALTTLPMGGGKGGSDFDPKGKSDGEVMRFCQALMVELYRHLGPDTDVPAGDIGVGAREVGYMAGMMKKLSNSAASVFTGKGLSFGGSLIRPEATGFGTVYFAEQMLRRVSMSFEGLRVSVSGSGNVAQYAIEKAMALGARVLTASDSGGTVVDEAGFTPEKLQALMHIKNVQRGRVEDYAKQFGLRFLPGARPWQIPVDVALPCATQNELDEADARILIANGVKCVAEGANMPATLAAAQAFIDAHVLYAPGKASNAGGVAVSGLEMSQNAARLSWTREEVDQRLFAIMCDIHENCVRHGHAESGYVNYLDGANIAGFVKVADAMLQQGLY
>NZ_CP019929.1|WP_039051317.1|3563163_3563802_-|trimeric-intracellular-cation-channel-family-protein
MPSETSTLLLHTLYLIAIVAEAMTAALAAGRREMDWVGVCVIACVTALGGGSLRDVLLGHYPLTWVSHPEYLAMTAGAALLTALCAPMLRHLRKVFLLLDALGLVAFSIIGCKVAQQMDLPLSIVIISGVITGCAGGVLRDVLCNDIPLLFRSELYASVSLVTGGLYLALDHYTGTVNVAVPIALAVGLAFRLLALRFNWQMPKFVYRGDWH
>NZ_CP019929.1|WP_012418822.1|3563929_3564784_+|universal-stress-protein
MTETILLATDLSARSDRALDRALMLARQHHDRLLALHVMEPPSASTLATPAWRRLTPDHKALAEQRLAEDLAEAGVPTEAVVVSGHPLDVILDTVQHFNCSLIVTGVARETTVGRLLLGTTVERLARHASTPVLVVKARPRKPYQDVVIATDFSEGSRQALTAALKLAADARITLFHAYSTPAGQDDLPQDAEVRSLYNDALQKAQAFLAATPELAGRAMPEIVLEAGLPEHMLSEFVFKRRCDLVVTGTHGLTGILRTAIGSVAEKLLEALPCDVLIVRQAAA
>NZ_CP019929.1|WP_086935808.1|3564785_3566018_-|muropeptide-transporter
MYFSRRVAPLLALGFASGLPLALTSGTLQAWATVEGASLQDIGFLTLVGSAYTLKFLWAPLIDRYAPPFLGRRRGWMLLTQLLLAVTIMLMGLLSPEQSLLPLAMLAVLVAFLSASQDIAFDAYSTDVLHKNERGAGAAVKVLGYRLAMLVSGGLALVLADHWLGWGTTYVLMGFLMLAGVAGTFWAPEPEQPSAAPRSLGRAVVEPFREFFSRRGAIIFLALIVLYKLGDAFAGALSTTFLIRGAGFTPTEVGTVNKILGLAATIVGALAGGAIMSRWGLYRSLMAFGALQAVSNLGYWLISVAPKSIGLMALAVGIENLCGGLGTAAFVALLMSMCNRAFSATQFALLSALSAVGRTYLAGPLTPVLVGYMGWPGFFMATVFIALPGLVLLWLRKSDIESLEREGLRL
>NZ_CP019929.1|WP_012418824.1|3566113_3566725_-|methionine-biosynthesis-protein-MetW
MSPAINALAPVVLRPDLERIANWIAPASRVLDLGCADGALLAYLRDYRQVRGAGVEIDDASVIACVGRGVEVIQQNLEDGLALFDDKQFDTVVLSQTLQSMHRTEHILREMARVSRFGIVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTLRDFEDLARDVGVRILERATFNDRREVKVLPGWRSTLAVYRFEA
>NZ_CP019929.1|WP_012418825.1|3566721_3567969_-|homoserine-O-acetyltransferase
MTSPALTAASVTPSRNTTSPDTTSHRPASVGVVSPVFLRFDEPLPLASGQSLNAYELAVETYGTLNAERSNAVLICHALNASHHVAGVAAGNPKDVGWWDNMVGPGKPVDTDVFFVIGINNLGSCFGSTGPASTNPETGLPWGAAFPVLTVEDWVRAQARVADHFGIQRFAAVMGGSLGGMQALSWAITLPERVAHCVVIASTPRLSAQNIGFNEVARRAIITDPGFHGGNYYAHDTVPHRGLAVARMIGHITYLSDDDMAEKFGRTQREPAENGAYRYGYDVEFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARATGGDLARALSSAQADFLLVSFTTDWRFPPERSRDIVRALLKNGSPVTYAEIDAPHGHDAFLLEDARYHAVVSAYYERIARNLGLTRQAEESAA
>NZ_CP019929.1|WP_039051319.1|3568380_3569967_+|glutamate--cysteine-ligase
MTAHSNSRLALVQAHPDLLAQTLRGVEKEGLRVDAQGVLARTPHPAGLGSALTNEQVTTDYSEALLELITGTHSRVESLLQELRDTHRFVYGVLDGELIWNQSMPAYLPAEADIPIAWYGHSNTGMLKHVYRRGLAERYGKTMQCIAGVHYNFSLPDALWPLLEPDAASLQESRSRGYIALIRNFTRYSWLLMYLFGAAPALSREFMRGREHPLQSLGADTLYLPYATSLRMSDLGYQNKAQSQLKLCYNDLSTFLGRLYEAVTQPWPAYQAIGTQRDGAWIQLNTNVLQIENEYYSSIRPKRTTGRCERPITALAERGVQYVEVRCLDIDPQEPTGLAPDTARFVDAFLLFCAVSESRFFDQNGYCQRSADNFSTVVKEGRKPGLMLDHDGQPVSLAQWGEALLDQVTQYAALYDAALGGTAYVAAVEQQRAKLLDPDLTPSARLLADLRASGQSFHDYTLAQSQRHADTLRAEALPAATAQAYADAVQDSLAQQQQIEQSDTVDFDTYVARYHAALKNPLPARDAS
>NZ_CP019929.1|WP_012418827.1|3570000_3570519_+|lipocalin-family-protein
MRRLILSLVLLASGLGLAQAQPAAVRTVDHVDLDRYMGRWYEIAHLPMFFQRNCVGDTTAEYSQNTDGTVSVTNRCRTKNGSIDAATGTATVVADSGNAKLEVSFFRPFKGDYWIIGLDPEYRWAVVGSPNRKTLWVLARTPELAPADLQQALNIAKSQGYDLSELKYTEQR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1392462 : 1443206

Pseudomonas_phage(21.74%)

head,tail,terminase,integrase,protease,tRNA,portal,capsid

attL 1402340:1402354|attR 1417144:1417158

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_119536594.1\|1392462_1395324_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	3.3e-70	25.5
WP_039052066.1\|1395313_1396279_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_119536631.1\|1396327_1396996_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.2e-27	37.3
WP_119536595.1\|1397035_1398499_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_169512726.1\|1398505_1398871_-	hypothetical protein	NA	NA	NA	NA
WP_012417097.1\|1399121_1400330_+	fatty acid desaturase	NA	NA	NA	NA
WP_119536596.1\|1400326_1402579_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	5.9e-107	37.3
1402340:1402354	attL	NA	NA	NA	NA
WP_119536597.1\|1402934_1404857_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	4.3e-66	31.9
WP_119653330.1\|1404853_1405744_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_119536599.1\|1405750_1406884_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_012417102.1\|1406883_1407705_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_012417103.1\|1407728_1408919_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_127815019.1\|1409250_1410459_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.8e-131	61.6
WP_127815020.1\|1410794_1411526_+	hypothetical protein	NA	NA	NA	NA
WP_127815021.1\|1411550_1412048_-	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	3.6e-57	63.0
WP_119651390.1\|1412047_1412326_-	hypothetical protein	NA	NA	NA	NA
WP_127815022.1\|1412322_1412907_-	hypothetical protein	NA	NA	NA	NA
WP_041937512.1\|1413039_1414056_-	recombination protein RecT	Q858E1	Salmonella_phage	2.2e-61	47.8
WP_127815328.1\|1414067_1414907_-	exonuclease VIII	V5YTC9	Pseudomonas_phage	1.6e-38	32.2
WP_012416093.1\|1414926_1415112_-	hypothetical protein	NA	NA	NA	NA
WP_119651373.1\|1415108_1415396_-	hypothetical protein	NA	NA	NA	NA
WP_127815023.1\|1415457_1415811_-	hypothetical protein	NA	NA	NA	NA
WP_127815024.1\|1417054_1417519_-	hypothetical protein	NA	NA	NA	NA
1417144:1417158	attR	NA	NA	NA	NA
WP_012417110.1\|1418053_1418608_-	ead/Ea22-like family protein	NA	NA	NA	NA
WP_012417112.1\|1419290_1419653_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_127812204.1\|1420278_1420644_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_127815025.1\|1420992_1421241_-	bssS family protein	NA	NA	NA	NA
WP_012416105.1\|1421470_1421935_+	hypothetical protein	NA	NA	NA	NA
WP_127815026.1\|1422179_1422998_+	YdaU family protein	A0A2I7RHJ6	Vibrio_phage	3.7e-19	47.7
WP_012416108.1\|1422984_1423683_+	hypothetical protein	NA	NA	NA	NA
WP_127812207.1\|1423816_1424179_+	hypothetical protein	R9TNL4	Vibrio_phage	1.0e-21	50.0
WP_127812208.1\|1424189_1424573_+	hypothetical protein	NA	NA	NA	NA
WP_127812209.1\|1424569_1425160_+	hypothetical protein	NA	NA	NA	NA
WP_127812210.1\|1425361_1425844_+	hypothetical protein	NA	NA	NA	NA
WP_127812211.1\|1426206_1426989_+	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	2.2e-114	74.6
WP_127815027.1\|1427526_1427805_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-08	59.2
WP_012417133.1\|1427791_1428058_-	BrnT family toxin	NA	NA	NA	NA
WP_012417134.1\|1428238_1428622_+	HNH endonuclease	Q8W6N0	Burkholderia_virus	7.0e-29	55.6
WP_012417135.1\|1428816_1429299_+\|terminase	phage terminase small subunit P27 family	A4JWZ6	Burkholderia_virus	2.7e-54	64.6
WP_039052220.1\|1429302_1431027_+\|terminase	terminase large subunit	A4JWZ7	Burkholderia_virus	7.0e-278	80.5
WP_012417137.1\|1431028_1431184_+	hypothetical protein	NA	NA	NA	NA
WP_012417138.1\|1431180_1432413_+\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	1.2e-154	66.8
WP_012417139.1\|1432421_1433039_+\|head,protease	HK97 family phage prohead protease	A0A1J0GUZ0	Halomonas_phage	5.1e-61	61.8
WP_012417140.1\|1433051_1434275_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	3.6e-135	59.3
WP_039052222.1\|1434312_1434633_+\|head,tail	phage head-tail connector protein	K7PKT4	Enterobacteria_phage	3.8e-12	36.5
WP_012417142.1\|1434643_1434982_+\|head	phage head closure protein	Q3HQT3	Burkholderia_phage	9.3e-09	39.3
WP_012417143.1\|1434978_1435473_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_012417144.1\|1435465_1435816_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_039052219.1\|1435815_1436256_+	hypothetical protein	NA	NA	NA	NA
WP_012417146.1\|1436327_1436975_+\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	3.9e-56	52.1
WP_012417147.1\|1437008_1437326_+	hypothetical protein	A0A0S2SYT8	Pseudomonas_phage	5.6e-24	48.6
WP_119649675.1\|1437388_1437634_+	DUF1799 domain-containing protein	NA	NA	NA	NA
WP_041937514.1\|1437668_1443206_+\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	8.8e-72	34.0

DBSCAN-SWA_2

1457421 : 1466163

Lake_Baikal_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012417171.1\|1457421_1457628_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-15	59.1
WP_012417172.1\|1457697_1458276_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	1.8e-23	34.3
WP_012417173.1\|1458455_1459766_+	trigger factor	NA	NA	NA	NA
WP_012417174.1\|1459768_1460422_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.5e-55	55.9
WP_012417175.1\|1460525_1461824_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.8e-129	56.2
WP_012417176.1\|1461998_1464431_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.5e-220	52.0
WP_012417177.1\|1464666_1466163_-	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	4.1e-16	28.5

DBSCAN-SWA_3

2030369 : 2041403

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114851977.1\|2030369_2031800_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.4e-29	26.4
WP_012417643.1\|2031912_2032461_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_012417644.1\|2032564_2033344_-	3'-5' exonuclease	NA	NA	NA	NA
WP_012417645.1\|2033340_2034192_-	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	9.2e-13	40.3
WP_012417646.1\|2034209_2035004_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-32	45.7
WP_012417647.1\|2034988_2035747_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	52.0
WP_012417648.1\|2035916_2036555_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_114851975.1\|2036707_2037745_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.0e-95	52.9
WP_114851974.1\|2037843_2039136_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.8e-67	36.3
WP_012417651.1\|2039289_2040303_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_114851972.1\|2040414_2040798_+	thioredoxin	V9SJ74	Achromobacter_phage	1.5e-10	27.6
WP_114852034.1\|2040800_2041403_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	7.4e-17	48.6

DBSCAN-SWA_4

2192997 : 2202519

Bordetella_phage(60.0%)

integrase

attL 2190718:2190732|attR 2201829:2201843

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2190718:2190732	attL	NA	NA	NA	NA
WP_127815071.1\|2192997_2194080_-\|integrase	site-specific integrase	A4PE72	Ralstonia_virus	3.4e-60	38.9
WP_127815072.1\|2194302_2194488_-	conjugal transfer protein TraR	A0A2D0W9R7	Bordetella_phage	1.7e-12	55.6
WP_127815073.1\|2194490_2194976_-	hypothetical protein	NA	NA	NA	NA
WP_169512731.1\|2194972_2196406_-	DEAD/DEAH box helicase	Q774Z8	Bordetella_phage	1.7e-184	68.2
WP_127815074.1\|2196402_2196876_-	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	6.2e-51	59.5
WP_127815075.1\|2196905_2197277_-	VRR-NUC domain-containing protein	Q775A2	Bordetella_phage	7.5e-28	56.1
WP_127815076.1\|2197367_2199536_-	DNA polymerase I	Q775A3	Bordetella_phage	2.9e-281	68.3
WP_127815331.1\|2199532_2199733_-	hypothetical protein	Q775A4	Bordetella_phage	2.2e-13	60.4
WP_127815077.1\|2199941_2200391_-	hypothetical protein	A0A2H4J3Y5	uncultured_Caudovirales_phage	2.4e-36	68.3
WP_127815078.1\|2200401_2200995_-	DUF2815 family protein	Q6J1N9	Burkholderia_virus	6.8e-31	45.3
WP_127815079.1\|2201008_2201215_-	hypothetical protein	NA	NA	NA	NA
WP_127815080.1\|2201211_2202519_-	DUF2800 domain-containing protein	Q775A7	Bordetella_phage	7.2e-150	65.2
2201829:2201843	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2205622 : 2239801

Bordetella_phage(58.62%)

head,protease,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127815087.1\|2205622_2206015_-	hypothetical protein	C7BGF7	Burkholderia_phage	1.1e-16	47.3
WP_127815088.1\|2206128_2206380_+	helix-turn-helix domain-containing protein	A0A0R6PJ81	Moraxella_phage	2.1e-05	43.8
WP_127815089.1\|2206376_2207411_+	DNA cytosine methyltransferase	W0LM09	Edwardsiella_phage	6.2e-104	58.7
WP_127815090.1\|2207407_2209681_+	replication protein	B6SD24	Bacteriophage	3.5e-123	55.6
WP_127815091.1\|2209868_2210108_+	hypothetical protein	Q775B7	Bordetella_phage	4.9e-12	45.5
WP_127815092.1\|2210168_2210705_+\|terminase	terminase	Q775B8	Bordetella_phage	1.3e-36	54.5
WP_164855667.1\|2210701_2212312_+\|terminase	terminase	Q775B9	Bordetella_phage	1.7e-257	78.9
WP_127815093.1\|2212352_2212817_+	GNAT family N-acetyltransferase	Q775C0	Bordetella_phage	1.5e-41	57.5
WP_127815094.1\|2212813_2213278_+	hypothetical protein	Q775C1	Bordetella_phage	7.7e-46	64.3
WP_127815095.1\|2213280_2213688_+	hypothetical protein	Q775C2	Bordetella_phage	1.0e-09	77.3
WP_127815096.1\|2213697_2215362_+\|head,tail	phage head-tail adapter protein	T1S9Z7	Salmonella_phage	7.6e-136	46.4
WP_127815097.1\|2215373_2215706_+	hypothetical protein	Q775C4	Bordetella_phage	1.2e-37	77.1
WP_127815098.1\|2215749_2216094_+	endopeptidase	Q775C5	Bordetella_phage	1.5e-22	52.2
WP_127815099.1\|2216053_2216737_+\|protease	protease	Q775C6	Bordetella_phage	5.4e-40	58.1
WP_127815100.1\|2216749_2217763_+	hypothetical protein	Q6J1R9	Burkholderia_virus	9.0e-140	71.4
WP_127815101.1\|2217783_2218227_+	hypothetical protein	K4NYY6	Pseudomonas_phage	2.4e-20	43.3
WP_127815102.1\|2218237_2218426_+	hypothetical protein	NA	NA	NA	NA
WP_127815103.1\|2218504_2219146_+	hypothetical protein	Q775D0	Bordetella_phage	7.1e-66	60.1
WP_127815104.1\|2219145_2221194_+	hypothetical protein	Q775D1	Bordetella_phage	0.0e+00	80.8
WP_127815105.1\|2221971_2224944_+	hypothetical protein	Q858G0	Salmonella_phage	1.4e-47	25.0
WP_127815106.1\|2224943_2226782_+	hypothetical protein	NA	NA	NA	NA
WP_127815107.1\|2226774_2229228_+	hypothetical protein	A0A2H4J9B2	uncultured_Caudovirales_phage	1.0e-176	42.8
WP_127815108.1\|2229287_2230808_+	hypothetical protein	Q775D5	Bordetella_phage	5.3e-43	46.3
WP_127815109.1\|2230823_2231984_+	hypothetical protein	G8CLA7	Synechococcus_phage	3.0e-46	38.6
WP_127815110.1\|2232012_2232387_+	diversity-generating retroelement protein Avd	Q775D7	Bordetella_phage	6.4e-59	87.9
WP_127815111.1\|2232671_2233658_+	Retron-type reverse transcriptase	Q775D8	Bordetella_phage	4.8e-130	64.5
WP_127815112.1\|2234138_2234387_+	hypothetical protein	Q775E0	Bordetella_phage	5.0e-28	74.7
WP_127815113.1\|2234386_2234884_+	glycoside hydrolase family 108 protein	Q775E1	Bordetella_phage	2.1e-65	71.8
WP_164855668.1\|2234886_2235510_+	hypothetical protein	Q775E2	Bordetella_phage	2.0e-65	80.5
WP_127812357.1\|2237240_2238398_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.8e-11	29.4
WP_082011639.1\|2238313_2239801_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.1e-20	39.6

DBSCAN-SWA_6

2466138 : 2493772

Bordetella_phage(63.64%)

head,tail,terminase,integrase,protease

attL 2459648:2459662|attR 2496355:2496369

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2459648:2459662	attL	NA	NA	NA	NA
WP_119647740.1\|2466138_2466531_-	hypothetical protein	L0MXF6	Edwardsiella_phage	1.1e-05	40.3
WP_119651456.1\|2466536_2467649_-\|tail	phage tail protein	Q775D5	Bordetella_phage	1.5e-50	67.3
WP_164855670.1\|2467809_2471199_-	hypothetical protein	M1IDU6	Pelagibacter_phage	2.8e-52	24.1
WP_127815127.1\|2471185_2472781_-	hypothetical protein	W6MYA2	Pseudomonas_phage	3.3e-19	28.6
WP_012416124.1\|2472792_2473386_-	phage protein	Q775D2	Bordetella_phage	3.5e-19	45.8
WP_012416123.1\|2473397_2475443_-	hypothetical protein	Q775D1	Bordetella_phage	0.0e+00	93.7
WP_012416122.1\|2475442_2476114_-	hypothetical protein	Q775D0	Bordetella_phage	2.1e-116	93.2
WP_012416121.1\|2476188_2476389_-	hypothetical protein	Q775C9	Bordetella_phage	7.9e-24	79.4
WP_012416120.1\|2476401_2476824_-	hypothetical protein	Q775C8	Bordetella_phage	3.3e-56	82.1
WP_039052162.1\|2476842_2477838_-	phage protein	Q775C7	Bordetella_phage	4.5e-184	97.6
WP_164855694.1\|2477851_2478526_-\|protease	protease	Q775C6	Bordetella_phage	2.1e-84	82.1
WP_012416117.1\|2478500_2478848_-	hypothetical protein	Q775C5	Bordetella_phage	3.1e-52	89.6
WP_127815129.1\|2478934_2480602_-\|head,tail	phage head-tail adapter protein	T1S9Z7	Salmonella_phage	2.4e-134	46.0
WP_127815130.1\|2480984_2481443_-	hypothetical protein	Q775C1	Bordetella_phage	8.3e-69	90.8
WP_041937483.1\|2481439_2481904_-	GNAT family N-acetyltransferase	Q775C0	Bordetella_phage	8.7e-74	93.5
WP_164855671.1\|2481947_2483480_-\|terminase	terminase	Q775B9	Bordetella_phage	2.7e-236	75.5
WP_119647729.1\|2483485_2484061_-\|terminase	terminase	Q775B8	Bordetella_phage	4.2e-78	85.6
WP_012416110.1\|2484079_2484346_-	hypothetical protein	Q775B7	Bordetella_phage	1.2e-27	84.2
WP_127815131.1\|2484506_2485136_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	2.8e-30	49.4
WP_012417122.1\|2485132_2485615_-	hypothetical protein	NA	NA	NA	NA
WP_127815132.1\|2485611_2486580_-	YdaU family protein	A0A2H4FS76	Methylophilaceae_phage	1.1e-14	41.8
WP_127815133.1\|2486579_2486789_-	hypothetical protein	NA	NA	NA	NA
WP_119647723.1\|2486790_2487105_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_164855672.1\|2487140_2487305_+	hypothetical protein	NA	NA	NA	NA
WP_114852948.1\|2487375_2487624_+	hypothetical protein	NA	NA	NA	NA
WP_119529931.1\|2488034_2488988_+	LexA family transcriptional regulator	B5TK58	Pseudomonas_phage	2.2e-10	26.1
WP_127815134.1\|2489221_2490049_+	hypothetical protein	NA	NA	NA	NA
WP_119536246.1\|2490340_2491132_+	hypothetical protein	NA	NA	NA	NA
WP_039052263.1\|2491830_2492157_+	hypothetical protein	NA	NA	NA	NA
WP_119529935.1\|2492257_2492542_+	hypothetical protein	NA	NA	NA	NA
WP_114852954.1\|2492538_2493024_+	HNH endonuclease	NA	NA	NA	NA
WP_114852955.1\|2493146_2493533_-	hypothetical protein	Q3LZN5	Bacteriophage	2.0e-07	57.4
WP_114852956.1\|2493580_2493772_-\|integrase	integrase	NA	NA	NA	NA
2496355:2496369	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2763505 : 2799178

Burkholderia_phage(26.92%)

head,plate,lysis,tail,terminase,integrase,holin,tRNA,portal,capsid

attL 2763293:2763317|attR 2793501:2793525

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2763293:2763317	attL	NA	NA	NA	NA
WP_127815158.1\|2763505_2764546_+	AAA family ATPase	Q7M293	Enterobacteria_phage	1.4e-71	41.4
WP_127815159.1\|2764547_2765174_+	hypothetical protein	NA	NA	NA	NA
WP_127815160.1\|2765743_2766814_-\|portal	phage portal protein	A4PE27	Ralstonia_virus	2.5e-116	60.1
WP_127815338.1\|2766813_2768562_-\|terminase	terminase	A4JWQ1	Burkholderia_virus	9.5e-214	64.9
WP_127815161.1\|2768720_2769578_+\|capsid	GPO family capsid scaffolding protein	A0A077K9W8	Ralstonia_phage	5.4e-53	45.1
WP_127815162.1\|2769607_2770648_+\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	1.8e-106	56.7
WP_127815163.1\|2770647_2771418_+\|integrase	integrase	A4PE31	Ralstonia_virus	5.4e-36	40.7
WP_127815164.1\|2771511_2771979_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	5.4e-31	52.2
WP_164855675.1\|2771978_2772185_+\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	8.1e-16	57.6
WP_127815165.1\|2772189_2772552_+	hypothetical protein	NA	NA	NA	NA
WP_127815166.1\|2772548_2772848_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_127815167.1\|2772840_2773647_+	DUF3380 domain-containing protein	E5E3R7	Burkholderia_phage	8.3e-72	57.1
WP_164855676.1\|2773643_2774090_+\|lysis	LysB family phage lysis regulatory protein	NA	NA	NA	NA
WP_127815169.1\|2774164_2774668_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-23	39.4
WP_127815170.1\|2774660_2775125_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	8.0e-35	51.7
WP_127815171.1\|2775186_2775813_+\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	5.1e-45	48.7
WP_127815340.1\|2775824_2776166_+	GPW/gp25 family protein	K4PAX6	Burkholderia_phage	2.5e-17	49.1
WP_127815172.1\|2776167_2777085_+\|plate	baseplate J/gp47 family protein	A0A077K9X9	Ralstonia_phage	2.8e-76	54.4
WP_164855677.1\|2777086_2777707_+\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	8.1e-51	57.0
WP_127815174.1\|2779084_2779267_+	hypothetical protein	NA	NA	NA	NA
WP_127815175.1\|2779390_2780572_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	2.1e-148	66.4
WP_127815176.1\|2780628_2781144_+\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	1.4e-51	57.9
WP_127815177.1\|2781168_2781537_+\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	6.6e-16	46.2
WP_127815178.1\|2781545_2781662_+\|tail	GpE family phage tail protein	E5FFG6	Burkholderia_phage	3.0e-07	78.8
WP_127815179.1\|2781665_2784404_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	1.1e-171	43.0
WP_127815180.1\|2784416_2784872_+\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	1.2e-32	50.4
WP_127815181.1\|2784871_2785975_+	phage late control D family protein	K4PAY4	Burkholderia_phage	4.9e-83	48.8
WP_127815182.1\|2786402_2786801_-	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	9.6e-13	56.6
WP_127815183.1\|2786903_2787128_+	hypothetical protein	NA	NA	NA	NA
WP_127815341.1\|2787133_2787406_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_127815184.1\|2787395_2787797_+	hypothetical protein	NA	NA	NA	NA
WP_127815185.1\|2787878_2788112_+	hypothetical protein	NA	NA	NA	NA
WP_127815186.1\|2788361_2788646_+	hypothetical protein	NA	NA	NA	NA
WP_127815187.1\|2788647_2791461_+	toprim domain-containing protein	K4NXL6	Burkholderia_phage	4.3e-248	48.7
WP_127815188.1\|2791776_2792034_-	hypothetical protein	NA	NA	NA	NA
WP_164855678.1\|2792043_2793423_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.9e-63	36.0
WP_012418211.1\|2793670_2794930_-	aspartate kinase	NA	NA	NA	NA
2793501:2793525	attR	NA	NA	NA	NA
WP_169512745.1\|2795022_2795997_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_012418213.1\|2796066_2797032_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_012418214.1\|2797068_2797713_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_012418215.1\|2797726_2799178_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	1.0e-35	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019929

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection