CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019930	Bordetella avium strain Ba002 chromosome, complete genome	2 crisprs	csa3,cas3,DinG,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019930_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019930_1

2109751-2109972

Orphan

Consensus_repeat	Method
AGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019930_1

>merge|NZ_CP019930|1|2109751-2109972|CRISPRCasFinder
GACGCGCGCCCTCGGGGGCAGCAAGCGCCCCGGGCGCACGCAGCGTGGGGGGCTTGCCCCGCCGCCGAGCCGTCCCGAGGCGGGCAGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTTGCCCCGCCGCCGGGCCGCCCCAAGGCGGGTAGCGCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT

>NZ_CP019930|1|1|2109751-2109972|CRISPRCasFinder
GACGCGCGCCCTCGGGGGCAGCAAGCGCCCCGGGCGCACGCAGCGTGGGGGGCT	TGCCCCGCCGCCGAGCCGTCCCGAGGCGGGCAGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTTGCCCCGCCGCCGGGCCGCCCCAAGGCGGG
TAGCGCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019930.1\|WP_012417672.1\|2109210_2109678_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP019930.1\|WP_012417673.1\|2110030_2110660_+\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NZ_CP019930.1\|WP_012417667.1\|2100342_2100687_-\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
NZ_CP019930.1\|WP_012417676.1\|2113366_2114128_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP019930.1\|WP_012417682.1\|2118276_2119098_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP019930.1\|WP_012417677.1\|2114156_2115758_+\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_CP019930.1\|WP_012417680.1\|2117216_2117657_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NZ_CP019930.1\|WP_012417664.1\|2097958_2098240_-\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NZ_CP019930.1\|WP_012417675.1\|2111903_2113205_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP019930.1\|WP_012417665.1\|2098239_2098722_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NZ_CP019930.1\|WP_012417668.1\|2100688_2103610_-\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NZ_CP019930.1\|WP_012417669.1\|2103996_2106618_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|378817
NZ_CP019930.1\|WP_012417671.1\|2107770_2109072_-\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP019930.1\|WP_012417679.1\|2116318_2117086_+\|NRDE-family-protein	unknown	unknown	gnl\|CDD\|377554
NZ_CP019930.1\|WP_012417663.1\|2097608_2097962_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|183670
NZ_CP019930.1\|WP_039052185.1\|2115828_2116317_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239828
NZ_CP019930.1\|WP_012417670.1\|2106614_2107730_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277319
NZ_CP019930.1\|WP_012417674.1\|2110743_2111874_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235109
NZ_CP019930.1\|WP_012417666.1\|2098723_2100346_-\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NZ_CP019930.1\|WP_012417681.1\|2117749_2118139_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211

Protein	Function_ID	Function_description	E-value
NZ_CP019930.1\|WP_012417672.1\|2109210_2109678_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.09021e-63
NZ_CP019930.1\|WP_012417673.1\|2110030_2110660_+\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	4.07046e-27
NZ_CP019930.1\|WP_012417667.1\|2100342_2100687_-\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	1.73102e-70
NZ_CP019930.1\|WP_012417676.1\|2113366_2114128_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.72325e-86
NZ_CP019930.1\|WP_012417682.1\|2118276_2119098_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	8.2427e-11
NZ_CP019930.1\|WP_012417677.1\|2114156_2115758_+\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	7.55618e-162
NZ_CP019930.1\|WP_012417680.1\|2117216_2117657_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.00316822
NZ_CP019930.1\|WP_012417664.1\|2097958_2098240_-\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	1.13843e-36
NZ_CP019930.1\|WP_012417675.1\|2111903_2113205_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	1.04189e-103
NZ_CP019930.1\|WP_012417665.1\|2098239_2098722_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	1.29263e-57
NZ_CP019930.1\|WP_012417668.1\|2100688_2103610_-\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP019930.1\|WP_012417669.1\|2103996_2106618_-\|AAA-family-ATPase	gnl\|CDD\|378817	pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.	4.79243e-13
NZ_CP019930.1\|WP_012417671.1\|2107770_2109072_-\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP019930.1\|WP_012417679.1\|2116318_2117086_+\|NRDE-family-protein	gnl\|CDD\|377554	pfam05742, TANGO2, Transport and Golgi organisation 2. In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation. In plants this family includes Solanum habrochaites Cwp, which is involved in water permeability in the cuticles of fruit. Mouse Tango2 has been found to be expressed during early embryogenesis in mice. This protein contains a conserved NRDE motif. This gene has been characterized in Drosophila melanogaster and named as transport and Golgi organisation 2, hence the name Tango2.	8.67362e-83
NZ_CP019930.1\|WP_012417663.1\|2097608_2097962_-\|cation:proton-antiporter	gnl\|CDD\|183670	PRK12671, PRK12671, putative monovalent cation/H+ antiporter subunit G; Reviewed.	1.27927e-52
NZ_CP019930.1\|WP_039052185.1\|2115828_2116317_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239828	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	1.24304e-77
NZ_CP019930.1\|WP_012417670.1\|2106614_2107730_-\|metallophosphoesterase	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.5023e-32
NZ_CP019930.1\|WP_012417674.1\|2110743_2111874_+\|hypothetical-protein	gnl\|CDD\|235109	PRK03187, tgl, transglutaminase; Provisional.	1.17046e-08
NZ_CP019930.1\|WP_012417666.1\|2098723_2100346_-\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP019930.1\|WP_012417681.1\|2117749_2118139_-\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	2.66067e-15

>NZ_CP019930.1|WP_012417672.1|2109210_2109678_+|winged-helix-turn-helix-transcriptional-regulator
MRELDRTDRKILDILQRNGRISITELAEQVNLSATPCSERVKRLERDGVIAGYHARLNPVALGKNLLVFLEIRLSAKSGDVFDKVKKELMYVPEVMECHLVSGDFDYLVKARLTEMAEYRRLLGEILKRLPASAESHSYVVMEEIKESLYLPLDP
>NZ_CP019930.1|WP_012417671.1|2107770_2109072_-|D-amino-acid-dehydrogenase
MHIIVLGSGVIGTTTAFYLARQGAQVTVLDRQPGPADETSYANAGQVSPGYSTPWAAPGIPLKALKWLFQKHAPLALRADGSLWQWRWMAAMLANCTADRYTVNKERMLRLAEYSRDCLRELRDSTGIQYEQRTQGTLQLFRTEAQLEAARRDIAVLEEVGVPYEVLDRDALPGAEPALARSLHKLAGGLRLPNDETGDCRLFTRALAEAAANLGARFHFNQAVEGMVLENGRVTGVRVGGEPMQADAYVAAFGSYTRGFLGPLGLDLPVYPVKGYSLTIPMRDAQASPVSTVLDETYKIAITRFDQRIRVGGMAELAGFDLTLRPQRRATLEMVVQDLFPGCGDVAAAEFWTGLRPMTPDSTPIVGATRYDNLFLNTGHGTLGWTMACGSGKLMADIVMGHQPAIRADDLALSRYQGKASPAGGLDLKQGRA
>NZ_CP019930.1|WP_012417670.1|2106614_2107730_-|metallophosphoesterase
MSSRPPSFLHTADWQIGRQYGQFDDDDAAVLAEARLEAVARLAAIARERGVCAVLVAGDVFDTQAVSDRLIRRLFGALEGYAGPWVMIPGNHDAALAESVWTRARKLACIPANVHLALEPGVVLLPELAVLAAPLTQRHTYDDVTRGFDSLETPAGLPRVGLAHGSVTGRLPDSADAANPIAPDRADTARLDYLALGDWHGCLRVTDRCWYAGTPETDRFRGNEPGYALHVRLGGAQPEVEAVRVGRYRWQAWDVDLELPADAEMLEARLQTLQADDVLRLTLRGRVSLAAWERLTQSIGRAEAHLRALRLEPDALSLEPDDADFSLLDGGGYLSDVAARLRAMQADPQTAPVAREAMQLLLRMAREEGGA
>NZ_CP019930.1|WP_012417669.1|2103996_2106618_-|AAA-family-ATPase
MRLHRIALQEFRKFREPVVLDGLDAGLNIIAGPNEAGKSTYAMALRAAFLERYNTSKVADLAPYGMAGARPTVCIEFEHGGRHYALQKHFLHKARCELRIDGSRLEGEEAEQTLARLLGFEIPGRGQSKPEHAGVPGLLWITQGSGQDIAEPARHADGQVREALTQISGELASTDGDRLFAQVQEARAALLDARGGKPKGVYKAAEEAYVRLGEAREALLRERAELDADVDRLAQWRAEYERAEREAPWVALEQQAAQARAQLQALAIEQERVQRLRQEANEAARLAQALRDQAARDRRDEEELRHLHAQSQAAARELAQHNDTGARMAQARVHAEAALQSARAALEAVQEQQRLRQARDWLRQACAEEERLGAALAAVQTGESQVAALLAEWQEVRIDAQAVTALRQLQREEEALRLRLEAGATRIRHLLDAGVSLSLGQQMLQGEGETLLAEAAELSLPGLGRLIIEPGGQDLPALRRERAEVQARLEQGLTALAAGSLAQAEARLAHATQLERELAQAKQALHALAPQGGAALQAALAQARQTRERLQAQLHGADLGGEADLDARLPAAKDAVQRATAAAQAAERQAREADAGQAQASSRAALLQEQYQSRQSAFDDAAQAARRALRAAQFAQAEQTEQERALQAREAESALAAHRPELLKQDAERYARSAELARQAQQERHARLLSLQGKLEQAGAQAVGEQLAETEAAWQRAGRLRADYERRAAALDLLWRLLGEQRDTATRRLLRPLSERLAHYLALLFPGADLSLDEQLQPLALVRGGTHDALEALSFGTREQLGLLARLAYADLLREAGRPTLLVLDDALVHADSRRRDLVKRALFDAATRHQILLFTCHADAWQDMGVVLRELP
>NZ_CP019930.1|WP_012417668.1|2100688_2103610_-|monovalent-cation/H+-antiporter-subunit-A
MSLILILALPFVGSLCAALLPANARNAEAWLAGLVALGSTLLVASLYPQIAAGEVIRVDIPWAPALGLQFALRMDGFAWLFSLIVSLIGTLVVLYARYYMSPQDPVPRFFSFFQAFMAAMLGVVLSGNLIQLVLFWEMTSLASFMLIAYWHHRADARRGARMALTVTGAGGLCLLGGVLLLGHIVGSYDMDVVLRAGDIVRAHPWYPAALALVALGALTKSAQFPFQFWLPNAMAAPTPVSAYLHSATMVKAGVFLLARFWPLLAGTDAWFWIIGGAGLISLVLGAYAAIFQQDMKGVLAYSTISHLGLITLLLGLNSPLALVAAVFHMVNHAIFKASLFMAAGIVDHETGTRDISRLSGLYSAMPLTATMAMVAAASMAGVPLLNGFLSKEMFFAETTFITGDRFLEYGLPLMATIAGAFSVAYSLRFIVQVFFGPPATDLPRAPHEPPRWMLLPSALLVLLCLVIGVLPGLTVGPVLHIAAQSILGPGMPQFSLAVWHGFNLPLVMSLVAMSAGVLLYLVLRAHQAANPGKVPFIYRLDGRRTFEYLLEVSAMGARWLLRRASSPRLQVQMLVIVSATLLVAWMPLRVSGWLDGMGPRTPADPVFLILWLAGGACALGAAYQAKYHRLASLTLSGGAGIVTCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIVSESDDERPDWKARARRTRDLGLAALAGISMSAITYAMLTRPVGDTISSFFVEQALPEGGGTNVVNVLLVDFRGFDTLGEITVLGIVALTVYALLRRFRPAQESIEMPRQQREQDGLEPGQPPASPDVKAPLPQGVMRIPAVLVRLLLPVAVLISVYLLLRGHNLPGGGFVGGLVMATSVILQYMVGGVYWVESRSRLNPQRWVGLGLLAAGAAAMSSWFALRPFMSALAWDVHVPLIGEVHLSSVLLFDLGVYMLVVGATVLVLVALAHQSLRAQRKLVSEAQAEAAMKGV
>NZ_CP019930.1|WP_012417667.1|2100342_2100687_-|Na+/H+-antiporter-subunit-C
MEWIYAVAVGVLVGSGVWLLLRPRTFQVIMGLSLISYAVNLFIFGMGRLTVGRPPVVDPLAPPDPGAYADPLPQALVLTAIVIGFATTALFLVVLLASRGFRGTDHVDGREPES
>NZ_CP019930.1|WP_012417666.1|2098723_2100346_-|monovalent-cation/H+-antiporter-subunit-D
MIDWQQHLPIYPIAVPLVAGALMLLLADTRRRERAFIAVASTLVQLLSAIALLALAAGAYDIWPDGIGVYLPGDWPAPFGIVLVVDRLAAIMLTLTATLGLATLVYSLARWDRAGVHFHSLFQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLLLHGSGGARVSAGLQYIAVNLVASFLLLISIALIYGVTGTLNMADLAVRAGQLVGSDRRLFEAGAAILGVAFLVKAGAWPLNFWLVSGYGSACPPVAAMFSIMTKVGIYSLLRIGSLLLPTGAPAAFSLDWMFAVGLATLIFGGVGILASQQLEKLVGYCVIVSAGTLLTALGMPGVTLTGPALFYLISSVLGTSAFFLLVELIERTRSFGANVLAVTMDNFDLDDPASRSDDVVGVAIPAAMAFLGLAFVACALLVTGLPPLSGFVAKFSLLSAAVSAANTSAPPMDAWLLVAGVLLSGLAGLIALGRTGIRVFWSSEDRSTPRLRLLEAGPVAVLILLCVALAAGAGPVSAYLDAAAQSLDAPADYVNAVLSKQPVRVLGGGH
>NZ_CP019930.1|WP_012417665.1|2098239_2098722_-|Na+/H+-antiporter-subunit-E
MRDVFSKMLLPLGMFFLWLLLNQSLSLGQIAFGAALAIWLGWASTRLRPLKSRPRRFYLLPGLFCRVLIDIIRSNWAVTLLIWRPRAEMSPGFLTIPLTMRDPHGIAMLACILTYTPGTVLVDISDSKGLTLHVLDLQNEDEWVALVKGRYERTLMEVFE
>NZ_CP019930.1|WP_012417664.1|2097958_2098240_-|K+/H+-antiporter-subunit-F
MDVLLYWSASFALICFAVGLGCAVIRVLRGPTAQDRVLGLDAVYIQAMLIMLVFGIRVGTGVYFDIALLIALFGFVGSTAMAKFLLRGEVIEP
>NZ_CP019930.1|WP_012417663.1|2097608_2097962_-|cation:proton-antiporter
MIPADIPWWIAVPASLLLIAGGMLALTGAVGLLRFGHFYARIHAPTLANTLGACSVLLASMLVFSYQASRPVFHEVVIVILLVLTSPVTGMLLMRAAVYRNRDAEVGPNSPHNSSEP
>NZ_CP019930.1|WP_012417673.1|2110030_2110660_+|DUF502-domain-containing-protein
MTRRLYRYFFLGLITILPIALTLYLLFVFLAWTEAIALTFVRPFIGDFYIPGLGLLLGILVILAIGYLVSKERVQRLLLLVEMPFTNLPVIKSIYSSIKSFADYFSSGSKATSQQVVILRIPGQALELVGLVTRRGMEGLPAGFLPGERVAVYLPMGYMIGGYTVFVPTEWVVPINMSVEEAMRSSLIAWMARAEHQTPPTPPHTDQPS
>NZ_CP019930.1|WP_012417674.1|2110743_2111874_+|hypothetical-protein
MQHNDVSSFRDAGGIRIFPSSPAALSQAQAFLYSRDLQAYATSRLAPDGAVCIQALPDFARQHLPQGDTTGLVHDLKLDTAGSDAALETEIVLAMLACPVAFPFPDVAELEAALRIRRNIVRAATRTALAFDTEKAERPADYWAYDEATGFTIVPGRSLIDGLTLATQPQVSGQTYSFSCYRATEYVTVLGIALEVRDSHPALYTRLQRQWETRAVMSGRFHEAFLREYGSMDAPLPPRFYVPGDRLWFRNPDAHSSNVEGYEGSWVFYLGSGLFNNFWKRDQPYTLTHKCLEIFHWRDGAQVDAGGKLFINEDIVEARVRETQADPAARQAVLERMLRIRDPQGVYAEGGCIDATRECARWVLPGHAEIALPEFP
>NZ_CP019930.1|WP_012417675.1|2111903_2113205_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MSNLIVHGGTPLRGKIVPSANKNAVLPILCATLLTDQPLRLIGVPEITDVKKILDIFRMLGSEVSVDYATGVLELHHRDTCFDPAQHHLPEEMRSSIMLVPPLLARFGVARLENDVKGCTLGVREIDPHVEVFERFGARVERAPDSLIARADGQMRANQHWLDYASVTTTENFALCAASAAGVSTLVNAASEPHVQEFCRFLEMLGVPIEGIGTSHLRIEGGRKLKGGEFRFDEDFHEIATFLALGAITGGSIIVKNSAPAQFPLIDRTFAKFGVEVEHRDGWSQAHSDGPLRVRRPFTQNILTKVEAAPWPYLPVDLLPIFIALGVRAEGSAMFWNKVYDGAMGWSVELSKFGAHVFLSDPHRLITFGGLPLSPAKVESPYIIRVAIALLMLAASIEGRSEITNALPIRRAHPNFVENLCSVGARVEWTHGD
>NZ_CP019930.1|WP_012417676.1|2113366_2114128_+|DeoR/GlpR-transcriptional-regulator
MTLNPRQSALLEQVRSQGSASIEELARAFDVTLQTVRRDVNLLAEAGMLSRFHGGVRSEPSTIENITYRQRQGLHAEGKRRIAEAVARQVPDGCSLLINIGTTTEAIARALLQHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGITGEATIDFIRQLKVDIGLIGISGIEADGTLRDYDFREVLVARTIIEQSREVWLAADSSKFQRQAMVELAPISRISRFFTDAEPAPQLAQVLHDAGVHVSVS
>NZ_CP019930.1|WP_012417677.1|2114156_2115758_+|glycerol-3-phosphate-dehydrogenase/oxidase
MNSTTSAAMPPRADLLARMDAADSWDVIVIGGGATGLGTAVDAAARGFRTLLIEAADFAKGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLSRNAPHLAWPLGFVVPAYTLLDQPFYGIGLKMYDLLAGKLNLASSRLLSRIETLRHASTLAPVVQGKRLRGGVLYYDGQFDDARLAVALMRTLFDLGGTAVNYVRVTGLTRDAQGKIDGVETEDTLSGARHTLHAKCVVNATGVWVDAVRRMDDPAAQAIVSPSQGVHLTLPRDFLPGDDAILVPKTDDGRVLFMVPWNGHTIVGTTDTARQDLPTDPRPLPGEVDFILETAGRYLTRQPTRADVTSVWAGLRPLVKASGDASTKSLSREHTILVAQSGLITVTGGKWTTYRRMAQDVVDTAIEKRLLPQAACRSAELPLHGAPAPGAGLLAPQGTPDSYYGTDLPVLRALPGADRILVQASGLSEAHVRYAARYELARTVEDVLARRNRALFLDAAAAQAAAPEVTRILAEELGHDADWQTRTLADFQAIAESFKLA
>NZ_CP019930.1|WP_039052185.1|2115828_2116317_+|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein
MDVFQQLQNLLSAQAADFRLLRHPAAGKSVEVAAIRGTEVSQGAKALVCRVKISAKQRKHVLAVFPADGQADLDAIALAAGGKKAALATHELARELTGCEIGAIPPFSFNTELHLIVDPSLRQRHDEIVFNAGRLDASIIMRTEDYFRIAQPELARFVRTAD
>NZ_CP019930.1|WP_012417679.1|2116318_2117086_+|NRDE-family-protein
MCLAVLALNALPGLPVLIAANRDEFHARPAAPAAAWPSGIYAGRDLLAGGTWMGAARNGHYAILTNYREVGRHLPDAPSRGKLAEHFLAGDLPARDYIASVAREGGRYNGFNLIVGDRQDAWYYGNRGGEPRLLKDGLYALSNHLLDSPWPKSLRLKHAVRQTFEHGLDLPALFAALGDRTVAEDASLPDTGLPRERERLLSSPFIVSADYGTRCSTVLLWRANGQGELVERRFDSAARLTGETALHFHLPGTVS
>NZ_CP019930.1|WP_012417680.1|2117216_2117657_+|carboxypeptidase-regulatory-like-domain-containing-protein
MKKIHERSLLAALLMAGAMTVSGAALAQDLPLLPQTQQQGDVQFLSGGIGDGQSGAIKAAASKYRLMLTFVQRGPGGVGEYLADIPVDIVNAKGQSVLKTVAQGPFLLANLPAGSYTVKASSNGAEKSTRVTIGKSGTARAIFEWR
>NZ_CP019930.1|WP_012417681.1|2117749_2118139_-|MAPEG-family-protein
MIHIVALMVAAALLPLVASISSKLGGEGFDNREPRLWLQAQKGWRARANAAQANSYEALPFFYAAVLFALYAQAPLAHLAVLMGAWVTVRLVYLALYVGGYGSLRSLSWVAAFALNLLILYAGLQAAGG
>NZ_CP019930.1|WP_012417682.1|2118276_2119098_+|CPBP-family-intramembrane-metalloprotease
MTDSLTWIFIFCAYALLWWPAARKAGLALLICGLGLAATQSALTLPSLLAFALLIASGWLVRGTRQAWLGHLIFIITAIALALHLLPGFHNPLIIDSTALKPGSTPMRLYFNLDKPLIAWWVLLVMAPPFLRFGWQDSLRTGLQAGIAAAICCLGLAWVLGALAWSPGWPSQGWPWLLNNALLVTMAEEAFFRAYIQRGLALRLGPAPACLLAALLFGLAHFAGGPALIGLAALAGLFYGWAFHRGGLAAAVLAHLLLNTLHLALFSYPALAH

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Crispr_ID: NZ_CP019930_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019930_2

3414181-3414402

Orphan

Consensus_repeat	Method
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019930_2

>merge|NZ_CP019930|2|3414181-3414402|CRISPRCasFinder
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCGGGGGGCAGCAAGCAGGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCAGAGAACAGCAAGCAAGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGTCCCTAGGCGGGACAGCCCCCTC

>NZ_CP019930|2|2|3414181-3414402|CRISPRCasFinder
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	GGGGGGCAGCAAGCAGGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCAGAGAACAGCAAGCAAGCGACAAGCCTGCG
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGTCCCTAGGCGGGACAGCCCCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019930.1\|WP_012418816.1\|3411108_3412641_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP019930.1\|WP_039051319.1\|3423088_3424675_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP019930.1\|WP_012418814.1\|3409525_3410569_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP019930.1\|WP_012418824.1\|3420821_3421433_-\|methionine-biosynthesis-protein-MetW	unknown	unknown	gnl\|CDD\|273958
NZ_CP019930.1\|WP_012418809.1\|3403883_3404936_+\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NZ_CP019930.1\|WP_012418820.1\|3416482_3417820_+\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NZ_CP019930.1\|WP_039051317.1\|3417871_3418510_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP019930.1\|WP_012418818.1\|3414447_3415110_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP019930.1\|WP_012418819.1\|3415208_3415991_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP019930.1\|WP_012418810.1\|3404972_3406109_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP019930.1\|WP_086935808.1\|3419493_3420726_-\|muropeptide-transporter	unknown	unknown	gnl\|CDD\|183369
NZ_CP019930.1\|WP_012418813.1\|3408556_3409441_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP019930.1\|WP_012418817.1\|3412643_3414101_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP019930.1\|WP_012418827.1\|3424708_3425227_+\|lipocalin-family-protein	unknown	unknown	gnl\|CDD\|381213
NZ_CP019930.1\|WP_012418822.1\|3418637_3419492_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP019930.1\|WP_012418811.1\|3406105_3408004_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP019930.1\|WP_049794180.1\|3408015_3408576_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP019930.1\|WP_012418815.1\|3410796_3411105_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP019930.1\|WP_039051316.1\|3402382_3403873_+\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NZ_CP019930.1\|WP_012418825.1\|3421429_3422677_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678

Protein	Function_ID	Function_description	E-value
NZ_CP019930.1\|WP_012418816.1\|3411108_3412641_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP019930.1\|WP_039051319.1\|3423088_3424675_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP019930.1\|WP_012418814.1\|3409525_3410569_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP019930.1\|WP_012418824.1\|3420821_3421433_-\|methionine-biosynthesis-protein-MetW	gnl\|CDD\|273958	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. [Amino acid biosynthesis, Aspartate family].	6.65817e-109
NZ_CP019930.1\|WP_012418809.1\|3403883_3404936_+\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	1.36949e-114
NZ_CP019930.1\|WP_012418820.1\|3416482_3417820_+\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_CP019930.1\|WP_039051317.1\|3417871_3418510_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.85822e-75
NZ_CP019930.1\|WP_012418818.1\|3414447_3415110_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.96785e-83
NZ_CP019930.1\|WP_012418819.1\|3415208_3415991_-\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	1.37289e-138
NZ_CP019930.1\|WP_012418810.1\|3404972_3406109_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	2.39417e-155
NZ_CP019930.1\|WP_086935808.1\|3419493_3420726_-\|muropeptide-transporter	gnl\|CDD\|183369	PRK11902, ampG, muropeptide transporter; Reviewed.	0
NZ_CP019930.1\|WP_012418813.1\|3408556_3409441_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	8.29804e-92
NZ_CP019930.1\|WP_012418817.1\|3412643_3414101_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP019930.1\|WP_012418827.1\|3424708_3425227_+\|lipocalin-family-protein	gnl\|CDD\|381213	cd19438, lipocalin_Blc-like, bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins. Escherichia coli bacterial lipocalin (Blc, also known as YjeL) is an outer membrane lipoprotein involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Blc has a binding preference for lysophospholipids. This group includes eukaryotic lipocalins such as Arabidopsis thaliana temperature-induced lipocalin-1 (TIL) which is involved in thermotolerance, oxidative, salt, drought and high light stress tolerance, and is needed for seed longevity by ensuring polyunsaturated lipids integrity. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	2.27722e-75
NZ_CP019930.1\|WP_012418822.1\|3418637_3419492_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	1.47285e-26
NZ_CP019930.1\|WP_012418811.1\|3406105_3408004_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP019930.1\|WP_049794180.1\|3408015_3408576_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.98743e-19
NZ_CP019930.1\|WP_012418815.1\|3410796_3411105_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.36957e-31
NZ_CP019930.1\|WP_039051316.1\|3402382_3403873_+\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.5303e-116
NZ_CP019930.1\|WP_012418825.1\|3421429_3422677_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0

>NZ_CP019930.1|WP_012418817.1|3412643_3414101_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MEWEIVIGLETHVQLATESKIFSGSSTRFGAAPNTQANEVDLALPGSLPVMNRGAAERAILFGLAIGAKIAPRSVFARKNYFYPDLPKGYQISQYELPVVVGGTLSFFVGEEEKTINLTRAHLEEDAGKSLHDEFHLANGAPASGIDLNRAGTPLLEIVTEPEMRSAAEAVAYARALHGLVVWLGICDGNMQEGSFRCDANVSVRPRGQVEFGTRAEIKNVNSFRFLERAIQYEVRRQIELIEDGGKVVQETRLYDAERDETRSMRSKEDAHDYRYFPDPDLPTLVIGQDWVEAVRATMPELPSAMRARFEADFGLPAYDAAQLTISRKLAAYFEAVARALPAGQAKLAANWIMGEVTATLNREEKDIADTPVQAAQLAALINRIIDGTISNKIARDVFAAMWAGENGGEPDAIIEARGLKQISDTGTISAMIDEVLAANPAIVAEYRAGKEKAFNSLVGQIMKAARGKANPQQVNDLLKAKLSA
>NZ_CP019930.1|WP_012418816.1|3411108_3412641_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSQSALHTEFGDIAGLRAALAERRVSAVELAESGLAAAQAAAGLNAFLHIDPELTLVQARAADAALAAGTAGPLAGIPIAHKDAFVTRGWRSTAGSKMLRDYLSPFDATVVERLQAAGAVSLGKLNCDEFAMGSGNENSAFGPARNPWDLAAVPGGSSGGSAAAVAARLVAGATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAGPLAPSSRDLLELLDVMSGFDPRDATSLERCDDAANAPGRIRAAFDAAQNGYQAAGSQPLKGLRIGVPAEFFGAGLTPDVAAAVEAALRQFEALGAERVAISLPRTELAIPAYYVIAPAEASSNLARFDGVRYGHRAAEYSDLNEMISRSRAEGFGDEVKRRILIGAYVLSHGYYDAYYLQAQRLRRLIAQDFQRAFAGQCDVIMGPVAPSVAKNIGENRDDPTADWLADVYTLGVSLAGLPAMSVPCGFGAAGRPVGLQIIGNYFDEGRLLAIADRYQQVTDWHQRTPATQDA
>NZ_CP019930.1|WP_012418815.1|3410796_3411105_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MALNQQDVARIARLARIELTPEQQSRAQDELNGILHLIERLQAVDTQGVEPLAHPLSAHEDIPLRLRQDAVTETASAERRAELLANAPEQSAGLFLVPKVIE
>NZ_CP019930.1|WP_012418814.1|3409525_3410569_-|rod-shape-determining-protein
MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEGGPNGKKVIQAVGQEAKQMLGRVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHPRNMLAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDASGSMVVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKQIGSAFPGSEVREIEVKGRNLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPPELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVADDPLTCVVRGCGEALEHLEKLGAIFIND
>NZ_CP019930.1|WP_012418813.1|3408556_3409441_-|rod-shape-determining-protein-MreC
MQRQGTPPLFRRGPPAEVRLVILVALALALIVVDSQLRILEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAANLVRSENEALQRQRIELSQVATHAVQLAAENAQLRRLLGVTDTVGQPATVVEVLYEPPNAFHPRLVFNKGSKAGIAPGMPVIDEGGVVGQIVRVTPMTAEAAMVTDERVSIPVQVLRNGLRLIAFGGHTPGTIDVRYLAANADIKPGDTIVTSGVGGLFPAGLPVAKISSVERDTASGFARAIAEPLAHPERYRHFLVLQVDVAKAEANQEEADGGTTQ
>NZ_CP019930.1|WP_049794180.1|3408015_3408576_-|rod-shape-determining-protein-MreD
MVAPRNNAAQRRLGTPSNVHPERLMRPARGFFVWGTLLLVWLLSLLPWRQWPASPDILLLVIAFWSAYEPRRVGMFTAFIFGLLLDVHDASLLGGHALTFTLVAYGALALHRRLQRFDLWSQAMHMLPVFFLSQLLTQIIMAWLAGRWAGWDWAYGVLLTTALWPVFGWVLQLPQRLHDDVESSAS
>NZ_CP019930.1|WP_012418811.1|3406105_3408004_-|penicillin-binding-protein-2
MFEFKKTSQQQKQRFRLRAWVGGLFALACFGVLIGRFWYLQVDRYEGFSERADRNRIAVQPIPPRRGEVLDRNGVVLARNYRTYTLEVVPARAGPVDELFARLTPVVYISPADQRRFKRRVSESGRYANLVLRNNLNETEAAWFSAHAFEFPGVELRARWVREYPQGEAAAHVVGYIGRIAENDLEDLEKSGQLGNYRGTDVIGKKGIEKTWEQALHGRTGLEEVEVTAGGRPVRTLRRIDPVPGSDIMLSIDLGLQRVAEKAFEGHRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLSGTYPIGSTYKPFVGLAALELGKRRATDRLPDPGYYEFGGQKFRNAGGAVFGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGERAGVLPSTDWKRRAYKDRERQRWYAGETISVAVGQGYNAFTLLQLAQGTSTLANNGLYRRPHLVHAVRDSRTGELTATPSTPDYRIPLKQANIDVIKSAMADVVRSGTARRAFANTAYQAAGKTGTAQVFSLRGGQYRAAALDERLRDHALFMGFAPVEHPRIAVALIVENAGWGASVAAPIAREVFDYWLTPKREDKIVRPQQVAAGEKAQ
>NZ_CP019930.1|WP_012418810.1|3404972_3406109_-|rod-shape-determining-protein-RodA
MKRIGLVLLRVFTAFDWPLLLVLVLFAALGLTVMHSAVGSTDWRFAEQARNFTIAFFAMWIVALVSPQTLMKLALPFYILGVVLLLGVEFVGETSKGATRWLNLGFTRIQPSEMMKIAVPMMLAWYFQRHEGQVRVRDFLVAVLMLGLPFGLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLIPAVLIGVIGIGTLVYYEDQLCEPDVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLLIARGLAIASRSVSQFGRLLAGSMTMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGVAFGIMMSISRAKPVKA
>NZ_CP019930.1|WP_012418809.1|3403883_3404936_+|Ldh-family-oxidoreductase
MKIAIPDAIAYGEALLVAQGVPQDIAFDVAEHLVESDRVGYTSHGLSILPNYARVLKEGFLQADGRLQLLTDNGGFLAYDGNNGFGQHVGKMAVQAAIERTTQQGSCVLTLRRSHHLGRMGYYGEMAASAGFILLAFTNVINRAPTVAPFGGARACLTTNPLCFAGPLPGGRPPLIVDMATSSIAVNKARVLATNGEQAPPGSLIDAEGNPTTDPNALFTNPPGALLPFGGHKGYAMGVVAELLAGVLSGGGTIQPENPRQGVATNNMFAVLLDPQVDFNASWRSHEVAAFIDYLHDCPPQPGVDGVQYPGEYEAANRARNGDAISFAPAIWHKLAELGQKLGVSAPAAA
>NZ_CP019930.1|WP_039051316.1|3402382_3403873_+|DASS-family-sodium-coupled-anion-symporter
MTAQAAVPAPQAPKKKIPIGLVAGFIALILVLLIPTPAELPVAGHRMLAILVFAVVVWITEAVSYEASAIMVTTLMAFLLGTAPSIKNPDVLIGTSAAITMALQGFANSALALVAGALFIAAAMTFTGLDRRIALVTLSLIGTTTRRILIGAIAVTIVLSLVVPSATARSAAVVPIMMGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVSWAEWLIAGAPWAIIMSVILILIVLKMLPPESNEIAGGKEAVERELREMGPMTPPQKRLLAVSIFLLMCWSTEKVLHNFDTTSTTYLGLVLLMLPRFGVMTWKDVQSRIPWGTVIVFGVGISLGSALLSTQAGQWLGNQVVTHTGLDNLGPLSIFAILGAFLILIHLGFASATALTSAMLPILISVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVCLGTETFTARQFAKVGILITIIGFALMIVMGMTYWRWLGLL
>NZ_CP019930.1|WP_012418818.1|3414447_3415110_-|orotate-phosphoribosyltransferase
MSNTATDFVRFALDEGVLRFGSFKVKSGRMSPYFFNAGLFNSGRSVGKLAAFYAQALLDSGLNFDMLFGPAYKGIPLATATAVALAGHPQASGDIPFAYNRKEAKDHGEGGTLVGAPLAGRVVIIDDVITAGTSVRESVEIIRAAGAQPAAVLIAMDRMERAGPDEALSPHSAVQDVAKTYGIPVISIASLADILQLLQDDEQFAAHRDSVLAYREQYGV
>NZ_CP019930.1|WP_012418819.1|3415208_3415991_-|exodeoxyribonuclease-III
MLRVISANLNGIRSANTKGFFDWLHQQNADFVCVQELKAQEADLSPAMKAPAPLQGYFHYAEKKGYSGVGIYTPHEPESVVIGLGVPDIDAEGRYIELVYPKLSVVSVYLPSGSSGDHRQTAKYRFMEHFYRHLADLIGRGREVVICGDWNIAHKEADLKNWKGNLKNSGFLPEERAWLTQVFDELKWVDVYRRLAPDATGEGYTWWSNRGQAWAKNVGWRIDYHIASGALAATAQQAAIYKDVRFSDHAPLTIDYDFSL
>NZ_CP019930.1|WP_012418820.1|3416482_3417820_+|NADP-specific-glutamate-dehydrogenase
MQSLNDFLGRVASRDPHQPEFMQAVQEVMGSLWPFIEKNPSYGQQALLERLVEPERVIQFRVCWTDDQGRAQVNRAFRIQHNSAIGPFKGGMRFHPSVNLSVLKFLAFEQTLKNALTTLPMGGGKGGSDFDPKGKSDGEVMRFCQALMVELYRHLGPDTDVPAGDIGVGAREVGYMAGMMKKLSNSAASVFTGKGLSFGGSLIRPEATGFGTVYFAEQMLRRVSMSFEGLRVSVSGSGNVAQYAIEKAMALGARVLTASDSGGTVVDEAGFTPEKLQALMHIKNVQRGRVEDYAKQFGLRFLPGARPWQIPVDVALPCATQNELDEADARILIANGVKCVAEGANMPATLAAAQAFIDAHVLYAPGKASNAGGVAVSGLEMSQNAARLSWTREEVDQRLFAIMCDIHENCVRHGHAESGYVNYLDGANIAGFVKVADAMLQQGLY
>NZ_CP019930.1|WP_039051317.1|3417871_3418510_-|trimeric-intracellular-cation-channel-family-protein
MPSETSTLLLHTLYLIAIVAEAMTAALAAGRREMDWVGVCVIACVTALGGGSLRDVLLGHYPLTWVSHPEYLAMTAGAALLTALCAPMLRHLRKVFLLLDALGLVAFSIIGCKVAQQMDLPLSIVIISGVITGCAGGVLRDVLCNDIPLLFRSELYASVSLVTGGLYLALDHYTGTVNVAVPIALAVGLAFRLLALRFNWQMPKFVYRGDWH
>NZ_CP019930.1|WP_012418822.1|3418637_3419492_+|universal-stress-protein
MTETILLATDLSARSDRALDRALMLARQHHDRLLALHVMEPPSASTLATPAWRRLTPDHKALAEQRLAEDLAEAGVPTEAVVVSGHPLDVILDTVQHFNCSLIVTGVARETTVGRLLLGTTVERLARHASTPVLVVKARPRKPYQDVVIATDFSEGSRQALTAALKLAADARITLFHAYSTPAGQDDLPQDAEVRSLYNDALQKAQAFLAATPELAGRAMPEIVLEAGLPEHMLSEFVFKRRCDLVVTGTHGLTGILRTAIGSVAEKLLEALPCDVLIVRQAAA
>NZ_CP019930.1|WP_086935808.1|3419493_3420726_-|muropeptide-transporter
MYFSRRVAPLLALGFASGLPLALTSGTLQAWATVEGASLQDIGFLTLVGSAYTLKFLWAPLIDRYAPPFLGRRRGWMLLTQLLLAVTIMLMGLLSPEQSLLPLAMLAVLVAFLSASQDIAFDAYSTDVLHKNERGAGAAVKVLGYRLAMLVSGGLALVLADHWLGWGTTYVLMGFLMLAGVAGTFWAPEPEQPSAAPRSLGRAVVEPFREFFSRRGAIIFLALIVLYKLGDAFAGALSTTFLIRGAGFTPTEVGTVNKILGLAATIVGALAGGAIMSRWGLYRSLMAFGALQAVSNLGYWLISVAPKSIGLMALAVGIENLCGGLGTAAFVALLMSMCNRAFSATQFALLSALSAVGRTYLAGPLTPVLVGYMGWPGFFMATVFIALPGLVLLWLRKSDIESLEREGLRL
>NZ_CP019930.1|WP_012418824.1|3420821_3421433_-|methionine-biosynthesis-protein-MetW
MSPAINALAPVVLRPDLERIANWIAPASRVLDLGCADGALLAYLRDYRQVRGAGVEIDDASVIACVGRGVEVIQQNLEDGLALFDDKQFDTVVLSQTLQSMHRTEHILREMARVSRFGIVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTLRDFEDLARDVGVRILERATFNDRREVKVLPGWRSTLAVYRFEA
>NZ_CP019930.1|WP_012418825.1|3421429_3422677_-|homoserine-O-acetyltransferase
MTSPALTAASVTPSRNTTSPDTTSHRPASVGVVSPVFLRFDEPLPLASGQSLNAYELAVETYGTLNAERSNAVLICHALNASHHVAGVAAGNPKDVGWWDNMVGPGKPVDTDVFFVIGINNLGSCFGSTGPASTNPETGLPWGAAFPVLTVEDWVRAQARVADHFGIQRFAAVMGGSLGGMQALSWAITLPERVAHCVVIASTPRLSAQNIGFNEVARRAIITDPGFHGGNYYAHDTVPHRGLAVARMIGHITYLSDDDMAEKFGRTQREPAENGAYRYGYDVEFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARATGGDLARALSSAQADFLLVSFTTDWRFPPERSRDIVRALLKNGSPVTYAEIDAPHGHDAFLLEDARYHAVVSAYYERIARNLGLTRQAEESAA
>NZ_CP019930.1|WP_039051319.1|3423088_3424675_+|glutamate--cysteine-ligase
MTAHSNSRLALVQAHPDLLAQTLRGVEKEGLRVDAQGVLARTPHPAGLGSALTNEQVTTDYSEALLELITGTHSRVESLLQELRDTHRFVYGVLDGELIWNQSMPAYLPAEADIPIAWYGHSNTGMLKHVYRRGLAERYGKTMQCIAGVHYNFSLPDALWPLLEPDAASLQESRSRGYIALIRNFTRYSWLLMYLFGAAPALSREFMRGREHPLQSLGADTLYLPYATSLRMSDLGYQNKAQSQLKLCYNDLSTFLGRLYEAVTQPWPAYQAIGTQRDGAWIQLNTNVLQIENEYYSSIRPKRTTGRCERPITALAERGVQYVEVRCLDIDPQEPTGLAPDTARFVDAFLLFCAVSESRFFDQNGYCQRSADNFSTVVKEGRKPGLMLDHDGQPVSLAQWGEALLDQVTQYAALYDAALGGTAYVAAVEQQRAKLLDPDLTPSARLLADLRASGQSFHDYTLAQSQRHADTLRAEALPAATAQAYADAVQDSLAQQQQIEQSDTVDFDTYVARYHAALKNPLPARDAS
>NZ_CP019930.1|WP_012418827.1|3424708_3425227_+|lipocalin-family-protein
MRRLILSLVLLASGLGLAQAQPAAVRTVDHVDLDRYMGRWYEIAHLPMFFQRNCVGDTTAEYSQNTDGTVSVTNRCRTKNGSIDAATGTATVVADSGNAKLEVSFFRPFKGDYWIIGLDPEYRWAVVGSPNRKTLWVLARTPELAPADLQQALNIAKSQGYDLSELKYTEQR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

417206 : 437440

Bordetella_phage(73.68%)

tail,protease,head,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169512549.1\|417206_418019_+	YdaU family protein	A0A2I7RHJ6	Vibrio_phage	8.2e-19	47.7
WP_039052172.1\|418005_418704_+	hypothetical protein	NA	NA	NA	NA
WP_039052171.1\|418700_419072_+	endonuclease	NA	NA	NA	NA
WP_169512550.1\|419232_419499_+	hypothetical protein	Q775B7	Bordetella_phage	1.2e-27	84.2
WP_041937482.1\|419517_420093_+	hypothetical protein	Q775B8	Bordetella_phage	9.4e-78	85.0
WP_041937541.1\|420098_421631_+\|terminase	terminase	Q775B9	Bordetella_phage	6.3e-238	75.8
WP_041937483.1\|421674_422139_+	GNAT family N-acetyltransferase	Q775C0	Bordetella_phage	8.7e-74	93.5
WP_012416114.1\|422135_422594_+	hypothetical protein	Q775C1	Bordetella_phage	4.9e-69	90.8
WP_041937484.1\|422976_424644_+\|head,tail	phage head-tail connector protein	T1S9Z7	Salmonella_phage	1.1e-134	46.0
WP_012416117.1\|424730_425078_+	hypothetical protein	Q775C5	Bordetella_phage	3.1e-52	89.6
WP_039052163.1\|425052_425727_+\|protease	protease	Q775C6	Bordetella_phage	9.7e-90	85.7
WP_039052162.1\|425740_426736_+	phage protein	Q775C7	Bordetella_phage	4.5e-184	97.6
WP_012416120.1\|426754_427177_+	hypothetical protein	Q775C8	Bordetella_phage	3.3e-56	82.1
WP_039052161.1\|427189_427390_+	hypothetical protein	Q775C9	Bordetella_phage	3.5e-24	80.9
WP_012416122.1\|427464_428136_+	hypothetical protein	Q775D0	Bordetella_phage	2.1e-116	93.2
WP_039052159.1\|428135_430181_+	phage protein	Q775D1	Bordetella_phage	0.0e+00	93.8
WP_039052158.1\|430192_430786_+	phage protein	Q775D2	Bordetella_phage	4.2e-20	47.0
WP_152609399.1\|430797_432393_+	hypothetical protein	W6MYA2	Pseudomonas_phage	5.6e-19	29.0
WP_169512551.1\|432379_435769_+	hypothetical protein	M1IDU6	Pelagibacter_phage	2.1e-52	24.1
WP_119651456.1\|435929_437042_+\|tail	phage tail protein	Q775D5	Bordetella_phage	1.5e-50	67.3
WP_119651455.1\|437047_437440_+	hypothetical protein	L0MXF6	Edwardsiella_phage	1.1e-05	40.3

DBSCAN-SWA_2

1438943 : 1489649

Pseudomonas_phage(16.0%)

integrase,tRNA,terminase,portal,tail,protease,head,capsid

attL 1455125:1455141|attR 1460599:1460615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012417092.1\|1438943_1441805_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	2.8e-69	25.4
WP_039052066.1\|1441794_1442760_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_169507411.1\|1442658_1443477_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.8e-27	37.8
WP_039052075.1\|1443657_1444968_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_039052076.1\|1444974_1445250_-	hypothetical protein	NA	NA	NA	NA
WP_012417097.1\|1445590_1446799_+	fatty acid desaturase	NA	NA	NA	NA
WP_012417098.1\|1446795_1449048_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	4.5e-107	37.3
WP_086935778.1\|1449403_1451326_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.2e-65	31.7
WP_012417100.1\|1451322_1452213_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_012417101.1\|1452219_1453353_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_012417102.1\|1453352_1454174_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_012417103.1\|1454197_1455388_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
1455125:1455141	attL	NA	NA	NA	NA
WP_039052068.1\|1455719_1456928_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	6.3e-132	61.6
WP_041937512.1\|1457713_1458730_-	recombination protein RecT	Q858E1	Salmonella_phage	2.2e-61	47.8
WP_012416092.1\|1458741_1459596_-	exonuclease VIII	V5YTC9	Pseudomonas_phage	2.2e-38	32.2
WP_012416093.1\|1459599_1459785_-	hypothetical protein	NA	NA	NA	NA
WP_012417109.1\|1459781_1460069_-	hypothetical protein	NA	NA	NA	NA
WP_012416095.1\|1460138_1460888_-	hypothetical protein	Q7Y5V4	Haemophilus_phage	2.9e-34	43.5
1460599:1460615	attR	NA	NA	NA	NA
WP_012416096.1\|1461240_1461504_+	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_039052135.1\|1461681_1461906_-	hypothetical protein	NA	NA	NA	NA
WP_012417110.1\|1462457_1463012_-	ead/Ea22-like family protein	NA	NA	NA	NA
WP_012417112.1\|1463694_1464057_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012417115.1\|1464687_1465128_-	hypothetical protein	C7BGF7	Burkholderia_phage	8.1e-13	37.7
WP_012417116.1\|1465171_1465435_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_127812204.1\|1465766_1466132_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041937479.1\|1466480_1466729_-	hypothetical protein	NA	NA	NA	NA
WP_012416105.1\|1466958_1467423_+	hypothetical protein	NA	NA	NA	NA
WP_012417121.1\|1467667_1468612_+	YdaU family protein	A0A2H4FS76	Methylophilaceae_phage	6.4e-15	41.8
WP_012417122.1\|1468608_1469091_+	hypothetical protein	NA	NA	NA	NA
WP_012417123.1\|1469087_1469741_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	9.2e-29	48.7
WP_012417125.1\|1469967_1470339_-	DUF2513 domain-containing protein	Q3HQY9	Burkholderia_phage	1.2e-33	58.2
WP_082011720.1\|1470508_1470916_+	hypothetical protein	NA	NA	NA	NA
WP_012417127.1\|1470915_1471317_+	hypothetical protein	NA	NA	NA	NA
WP_012417129.1\|1471604_1472108_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_158308695.1\|1472217_1472400_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_082011721.1\|1472580_1473552_+	hypothetical protein	A0A2H4JG39	uncultured_Caudovirales_phage	1.1e-25	39.3
WP_012417132.1\|1473967_1474246_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	2.9e-08	57.1
WP_012417133.1\|1474232_1474499_-	BrnT family toxin	NA	NA	NA	NA
WP_012417134.1\|1474679_1475063_+	HNH endonuclease	Q8W6N0	Burkholderia_virus	7.0e-29	55.6
WP_012417135.1\|1475259_1475742_+\|terminase	phage terminase small subunit P27 family	A4JWZ6	Burkholderia_virus	2.7e-54	64.6
WP_039052220.1\|1475745_1477470_+\|terminase	terminase large subunit	A4JWZ7	Burkholderia_virus	7.0e-278	80.5
WP_012417137.1\|1477471_1477627_+	hypothetical protein	NA	NA	NA	NA
WP_012417138.1\|1477623_1478856_+\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	1.2e-154	66.8
WP_012417139.1\|1478864_1479482_+\|head,protease	HK97 family phage prohead protease	A0A1J0GUZ0	Halomonas_phage	5.1e-61	61.8
WP_012417140.1\|1479494_1480718_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	3.6e-135	59.3
WP_039052222.1\|1480755_1481076_+\|head,tail	phage head-tail connector protein	K7PKT4	Enterobacteria_phage	3.8e-12	36.5
WP_012417142.1\|1481086_1481425_+\|head	phage head closure protein	Q3HQT3	Burkholderia_phage	9.3e-09	39.3
WP_012417143.1\|1481421_1481916_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_012417144.1\|1481908_1482259_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_039052219.1\|1482258_1482699_+	hypothetical protein	NA	NA	NA	NA
WP_012417146.1\|1482770_1483418_+\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	3.9e-56	52.1
WP_012417147.1\|1483451_1483769_+	hypothetical protein	A0A0S2SYT8	Pseudomonas_phage	5.6e-24	48.6
WP_119649675.1\|1483831_1484077_+	DUF1799 domain-containing protein	NA	NA	NA	NA
WP_041937514.1\|1484111_1489649_+\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	8.8e-72	34.0

DBSCAN-SWA_3

2078359 : 2089393

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012417642.1\|2078359_2079790_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.4e-29	26.4
WP_012417643.1\|2079902_2080451_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_012417644.1\|2080554_2081334_-	3'-5' exonuclease	NA	NA	NA	NA
WP_012417645.1\|2081330_2082182_-	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	9.2e-13	40.3
WP_012417646.1\|2082199_2082994_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-32	45.7
WP_012417647.1\|2082978_2083737_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	52.0
WP_012417648.1\|2083906_2084545_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_012417649.1\|2084697_2085735_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.5e-94	52.9
WP_169512567.1\|2085833_2087126_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	7.6e-67	36.3
WP_012417651.1\|2087279_2088293_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_012417652.1\|2088404_2088788_+	thioredoxin	V9SJ74	Achromobacter_phage	1.0e-11	28.6
WP_012417653.1\|2088790_2089393_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	7.4e-17	48.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019930

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection