CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP044336	Enterobacter hormaechei strain AKB48 plasmid unnamed1, complete sequence	0 crisprs	DEDDh	2
NZ_CP044337	Enterobacter hormaechei strain AKB48 plasmid unnamed2, complete sequence	0 crisprs	DEDDh	1
NZ_CP044335	Enterobacter hormaechei strain AKB48 chromosome, complete genome	1 crisprs	DEDDh,cas3,DinG,WYL	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4086 : 11863

Salmonella_phage(83.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169724835.1\|4086_4422_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	4.8e-58	95.5
WP_016051624.1\|4511_5210_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	3.7e-137	100.0
WP_080112972.1\|5202_6000_+	C40 family peptidase	J9Q7R4	Salmonella_phage	1.2e-155	95.8
WP_169724836.1\|5987_6575_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	9.0e-100	90.8
WP_169724837.1\|6596_11228_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.5
WP_169724905.1\|11245_11863_+	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	2.5e-28	38.3

DBSCAN-SWA_2

16301 : 122903

123

Salmonella_phage(91.89%)

holin,tail,terminase,capsid,integrase

attL 22724:22742|attR 86546:86564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169724838.1\|16301_17090_+	receptor-recognizing protein	E5DHZ0	Enterobacter_phage	2.8e-56	62.4
WP_000064173.1\|17164_17488_+	hypothetical protein	J9Q6E7	Salmonella_phage	1.4e-46	92.5
WP_169724839.1\|17501_18194_+	hypothetical protein	J9Q7Y7	Salmonella_phage	6.2e-124	95.2
WP_000147960.1\|18195_18447_+	hypothetical protein	J9Q7R6	Salmonella_phage	1.9e-30	89.2
WP_080332520.1\|18397_18604_+	hypothetical protein	J9Q7G2	Salmonella_phage	8.1e-24	80.0
WP_169724906.1\|18631_19135_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016582626.1\|19159_19429_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_160859104.1\|20516_20870_+	hypothetical protein	J9Q7G3	Salmonella_phage	2.2e-45	100.0
WP_169724840.1\|20911_21709_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.2e-11	26.1
WP_006812583.1\|21972_22698_+	hypothetical protein	J9Q7R8	Salmonella_phage	3.8e-140	99.2
22724:22742	attL	NA	NA	NA	NA
WP_169724841.1\|22758_24099_+	AAA family ATPase	J9Q7G4	Salmonella_phage	2.9e-247	99.6
WP_169724907.1\|24257_25373_+	DNA primase	J9Q720	Salmonella_phage	2.5e-215	97.6
WP_169724842.1\|25428_25848_+	hypothetical protein	A0A0M4QWT0	Salmonella_phage	8.8e-25	54.9
WP_169724843.1\|25969_26764_+	hypothetical protein	J9Q7Z0	Salmonella_phage	3.2e-140	97.0
WP_169724908.1\|27064_27322_+	hypothetical protein	J9Q7R9	Salmonella_phage	2.2e-34	94.1
WP_169724844.1\|27356_28679_+	DNA ligase	J9Q7G5	Salmonella_phage	2.4e-257	99.1
WP_022649968.1\|28838_29051_+	hypothetical protein	J9Q6I3	Salmonella_phage	5.8e-33	98.6
WP_116325911.1\|29197_29503_+	C-type natriuretic protein	J9Q7S1	Salmonella_phage	4.1e-48	98.0
WP_169724845.1\|30567_31293_+	hypothetical protein	NA	NA	NA	NA
WP_169724846.1\|31436_32363_-	DUF4238 domain-containing protein	A0A0F7LBR6	Escherichia_phage	4.0e-86	53.7
WP_048228581.1\|32440_32998_-	hypothetical protein	NA	NA	NA	NA
WP_169724847.1\|33207_33981_+	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	1.6e-88	65.1
WP_169724848.1\|33991_34213_+	hypothetical protein	A0A0B6VT64	Edwardsiella_phage	7.4e-07	50.8
WP_169724849.1\|34209_34575_+	hypothetical protein	K7PH35	Enterobacteria_phage	4.3e-36	65.6
WP_063137490.1\|34574_34820_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.0e-12	44.9
WP_169724850.1\|34915_35524_+	hypothetical protein	NA	NA	NA	NA
WP_060458864.1\|35533_35944_+	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
WP_169724851.1\|36116_37223_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.2e-25	32.6
WP_022649892.1\|37214_37601_-	transcriptional regulator	NA	NA	NA	NA
WP_004110118.1\|37864_38077_+	hypothetical protein	NA	NA	NA	NA
WP_169724852.1\|38186_40553_+	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	93.3
WP_169724853.1\|40649_41885_+	AAA family ATPase	J9Q733	Salmonella_phage	2.5e-237	99.0
WP_169724854.1\|42065_45584_+	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	98.9
WP_165447193.1\|45598_46024_+	hypothetical protein	J9Q7S4	Salmonella_phage	2.8e-71	99.3
WP_169724855.1\|46052_46616_-	DNA-binding protein	J9Q7G7	Salmonella_phage	9.9e-64	65.1
WP_169724856.1\|47160_47592_+	hypothetical protein	J9Q6I8	Salmonella_phage	3.4e-72	98.6
WP_169724857.1\|47711_48740_+	regulator	J9Q7Z3	Salmonella_phage	2.2e-162	98.5
WP_169724858.1\|48800_49745_+	exonuclease	J9Q7S6	Salmonella_phage	8.3e-180	98.4
WP_169724834.1\|49744_50011_+	hypothetical protein	J9Q7G8	Salmonella_phage	4.0e-39	98.9
WP_169724909.1\|50058_51090_+	recombinase	J9Q736	Salmonella_phage	7.6e-195	98.8
WP_000589750.1\|51180_51381_+	hypothetical protein	J9Q6J0	Salmonella_phage	9.3e-25	93.9
WP_004110049.1\|51384_52215_+	hypothetical protein	J9Q7Z4	Salmonella_phage	1.1e-127	99.3
WP_169724859.1\|52377_52749_+	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	2.0e-68	97.6
WP_004110038.1\|53211_53487_+	hypothetical protein	J9Q738	Salmonella_phage	4.1e-47	97.8
WP_004110036.1\|53526_53706_+	hypothetical protein	J9Q6J1	Salmonella_phage	7.3e-21	98.3
WP_169724860.1\|53702_54038_+	hypothetical protein	J9Q7Z5	Salmonella_phage	3.5e-56	99.1
WP_006812558.1\|54037_54250_+	hypothetical protein	J9Q7S8	Salmonella_phage	3.1e-34	98.6
WP_169724861.1\|54818_55883_-	replication protein RepA	J9Q7H0	Salmonella_phage	2.4e-188	98.9
WP_022649908.1\|56627_57272_+	hypothetical protein	J9Q739	Salmonella_phage	2.2e-123	99.1
WP_169724862.1\|57347_57842_+	N-acetyltransferase	J9Q6J3	Salmonella_phage	1.5e-87	97.0
WP_169724863.1\|58018_59104_+	metallophosphoesterase	J9Q7S9	Salmonella_phage	2.7e-206	98.6
WP_169724864.1\|60746_61250_+	SMC family ATPase	J9Q741	Salmonella_phage	2.4e-85	98.8
WP_169724865.1\|61239_61986_+	hypothetical protein	J9Q6J5	Salmonella_phage	3.2e-134	97.6
WP_169724866.1\|61998_62568_+	hypothetical protein	J9Q7Z7	Salmonella_phage	2.9e-103	98.9
WP_169724867.1\|62645_64961_+	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	99.5
WP_169724868.1\|65068_66211_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.4e-218	99.5
WP_169724869.1\|66293_67163_+	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	3.3e-159	98.3
WP_169724870.1\|67351_68455_+	thymidylate synthase	J9Q6J6	Salmonella_phage	1.2e-214	98.4
WP_160956520.1\|68474_68870_+	hypothetical protein	J9Q7Z8	Salmonella_phage	3.6e-68	97.7
WP_169724871.1\|68872_69343_+	dihydrofolate reductase	J9Q7T1	Salmonella_phage	1.5e-86	98.7
WP_169724872.1\|69342_69987_+	AAA family ATPase	J9Q7H4	Salmonella_phage	9.8e-116	99.1
WP_004109992.1\|70050_70470_+	hypothetical protein	J9Q743	Salmonella_phage	6.4e-68	97.8
WP_169724873.1\|70479_71037_+	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.3e-100	98.4
WP_169724874.1\|71165_72008_+	hypothetical protein	J9Q7Z9	Salmonella_phage	3.2e-106	92.1
WP_169724875.1\|72193_72787_+	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	1.9e-110	99.0
WP_058671987.1\|72990_73221_+	hypothetical protein	J9Q7H5	Salmonella_phage	6.1e-36	98.7
WP_169724876.1\|74061_76059_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	4.8e-20	26.5
WP_169724877.1\|76123_77401_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_052768126.1\|78150_78753_-	hypothetical protein	NA	NA	NA	NA
WP_169724878.1\|79147_79642_+	hypothetical protein	J9Q6J9	Salmonella_phage	6.9e-77	94.5
WP_047055012.1\|79651_79840_+	hypothetical protein	J9Q800	Salmonella_phage	6.7e-25	95.2
WP_071692168.1\|79957_80530_+	hypothetical protein	J9Q7H6	Salmonella_phage	9.0e-97	98.4
WP_169724879.1\|80671_82357_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	98.6
WP_169724880.1\|82415_83105_+	hypothetical protein	J9Q6K2	Salmonella_phage	1.2e-122	97.8
WP_006812541.1\|83101_83383_+	hypothetical protein	J9Q801	Salmonella_phage	6.5e-48	100.0
WP_169724881.1\|83385_83757_+	hypothetical protein	J9Q7T4	Salmonella_phage	4.7e-62	98.4
WP_169724882.1\|83848_84490_+	HD domain-containing protein	J9Q7H7	Salmonella_phage	1.6e-110	97.2
WP_116325928.1\|84486_85038_+	hypothetical protein	J9Q748	Salmonella_phage	2.2e-100	95.6
WP_072105590.1\|85076_85775_+	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	1.1e-115	93.1
WP_169724883.1\|85830_86034_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	4.4e-30	95.5
WP_042863533.1\|86573_86810_+	DUF1380 domain-containing protein	J9Q7H8	Salmonella_phage	1.6e-39	97.4
86546:86564	attR	NA	NA	NA	NA
WP_040110257.1\|86806_87127_+	hypothetical protein	J9Q750	Salmonella_phage	1.3e-57	93.4
WP_169724884.1\|87139_87538_+	hypothetical protein	NA	NA	NA	NA
WP_165501436.1\|88967_89210_-	hypothetical protein	J9Q751	Salmonella_phage	2.0e-37	93.8
WP_169724885.1\|89199_89514_-	DUF4084 domain-containing protein	NA	NA	NA	NA
WP_169724886.1\|89581_89800_+	hypothetical protein	J9Q804	Salmonella_phage	1.2e-33	95.8
WP_016051706.1\|89940_90252_+	hypothetical protein	J9Q7T7	Salmonella_phage	6.5e-49	100.0
WP_100151356.1\|90378_90774_+	hypothetical protein	J9Q7I1	Salmonella_phage	9.7e-66	97.7
WP_160859095.1\|90984_91182_+	hypothetical protein	J9Q753	Salmonella_phage	1.6e-32	98.5
WP_169724887.1\|91387_91870_+	hypothetical protein	J9Q805	Salmonella_phage	5.7e-84	95.6
WP_016051712.1\|92512_92716_-	hypothetical protein	J9Q7I3	Salmonella_phage	1.3e-29	100.0
WP_105625583.1\|92766_93417_-	hypothetical protein	J9Q754	Salmonella_phage	6.0e-113	98.6
WP_169724888.1\|93740_94268_-	transcriptional regulator	J9Q6L0	Salmonella_phage	9.9e-82	98.6
WP_000683475.1\|94272_94695_-	hypothetical protein	J9Q806	Salmonella_phage	8.2e-63	85.7
WP_169724889.1\|94754_95033_-	hypothetical protein	J9Q7T9	Salmonella_phage	7.1e-39	96.7
WP_169724890.1\|95035_96595_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	2.2e-294	99.2
WP_169724891.1\|96659_97358_+	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	6.2e-124	98.3
WP_169724892.1\|97357_98026_+	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	4.0e-112	96.8
WP_006812519.1\|98022_98661_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	1.1e-111	99.5
WP_169724893.1\|98653_98908_+	hypothetical protein	J9Q7U0	Salmonella_phage	7.7e-40	96.4
WP_169724894.1\|98913_99804_+	hypothetical protein	J9Q7I6	Salmonella_phage	6.4e-166	98.3
WP_000176291.1\|99813_100080_+	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_169724895.1\|100275_100917_+	DNA-binding protein	J9Q6D4	Salmonella_phage	3.7e-107	97.7
WP_002211787.1\|100919_102176_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_169724896.1\|102209_103784_+	hypothetical protein	J9Q7R1	Salmonella_phage	1.2e-297	98.5
WP_169724897.1\|103806_104703_+	hypothetical protein	J9Q7F4	Salmonella_phage	3.6e-148	96.6
WP_169724898.1\|104729_105605_+\|capsid	phage major capsid protein	J9Q710	Salmonella_phage	5.5e-162	99.3
WP_169724899.1\|105679_106345_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	3.0e-99	93.5
WP_000801184.1\|106388_106823_+	hypothetical protein	J9Q7Y3	Salmonella_phage	2.1e-74	100.0
WP_045339227.1\|106822_107656_+	hypothetical protein	J9Q7R2	Salmonella_phage	1.3e-152	99.6
WP_001027662.1\|107753_108098_+	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_000523626.1\|108088_108562_+	hypothetical protein	J9Q711	Salmonella_phage	2.3e-82	100.0
WP_169724900.1\|108563_108947_+	hypothetical protein	J9Q6D8	Salmonella_phage	2.9e-67	99.2
WP_006812510.1\|109021_109768_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	6.8e-129	98.4
WP_000163862.1\|109827_110145_+	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_169724901.1\|110270_110495_+	hypothetical protein	J9Q7F7	Salmonella_phage	1.2e-33	98.6
WP_169724902.1\|110502_115086_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	90.6
WP_169724835.1\|115127_115463_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	4.8e-58	95.5
WP_169724903.1\|115552_116251_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.1e-136	99.6
WP_080112972.1\|116243_117041_+	C40 family peptidase	J9Q7R4	Salmonella_phage	1.2e-155	95.8
WP_169724836.1\|117028_117616_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	9.0e-100	90.8
WP_169724904.1\|117637_122269_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.5
WP_169724905.1\|122285_122903_+	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	2.5e-28	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP044337

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26971 : 65180

Escherichia_phage(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151316232.1\|26971_27676_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_151317919.1\|27908_28769_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_000587837.1\|28781_29324_+	AAA family ATPase	NA	NA	NA	NA
WP_156660299.1\|29805_29997_-	hypothetical protein	NA	NA	NA	NA
WP_000248278.1\|30020_30248_+	hypothetical protein	NA	NA	NA	NA
WP_169724928.1\|30298_31435_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_169724929.1\|31549_32920_+\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
WP_014342213.1\|33061_33187_-	hypothetical protein	NA	NA	NA	NA
WP_169724930.1\|34163_34868_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.2e-137	98.7
WP_151292574.1\|35906_36404_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	4.1e-21	40.1
WP_001336345.1\|36515_36806_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|36811_37603_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_134906484.1\|37767_38115_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
WP_169724931.1\|38108_38948_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	6.5e-11	27.8
WP_000050481.1\|39352_40894_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_169724932.1\|41130_41967_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	4.3e-87	58.1
WP_000359986.1\|42292_43066_+	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_077252464.1\|43046_43328_-	hypothetical protein	NA	NA	NA	NA
WP_002026779.1\|43547_43733_-	hypothetical protein	NA	NA	NA	NA
WP_169724933.1\|43781_44966_+\|transposase	IS4-like element ISEc29 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.5e-48	34.8
WP_000052512.1\|45364_46840_+	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_000155092.1\|46895_47780_+	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_169724934.1\|48021_49425_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_130952409.1\|49453_49777_-	hypothetical protein	NA	NA	NA	NA
WP_169724935.1\|49832_50813_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.0e-184	98.8
WP_169722059.1\|51761_52730_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.8e-183	98.4
WP_004896925.1\|53281_53824_-	hypothetical protein	NA	NA	NA	NA
WP_169724936.1\|54708_55413_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.9e-137	98.7
WP_169724937.1\|58638_59148_-	MucR family transcriptional regulator	NA	NA	NA	NA
WP_169724938.1\|59195_61283_-	conjugal transfer protein TrbC	NA	NA	NA	NA
WP_169724939.1\|61295_62246_-	DsbC family protein	NA	NA	NA	NA
WP_169724940.1\|62256_63519_-	conjugal transfer protein TrbA	NA	NA	NA	NA
WP_169724941.1\|63563_63839_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_045626302.1\|64063_64447_-	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_169724942.1\|64526_65180_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP044335

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044335_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044335_1

18099-18200

Orphan

Consensus_repeat	Method
TGGCGCTGACGCTTACCGGGCCTACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044335_1

>merge|NZ_CP044335|1|18099-18200|CRISPRCasFinder
TGGCGCTGACGCTTACCGGGCCTACAGGAGTGCCAAAGGCAAATGAGCTGGCCTGCACGGACAAAAAAGCCCGGTGGCGCTGATGCTTACCGGGCCTACAGG

>NZ_CP044335|1|1|18099-18200|CRISPRCasFinder
TGGCGCTGACGCTTACCGGGCCTACAGG	AGTGCCAAAGGCAAATGAGCTGGCCTGCACGGACAAAAAAGCCCGG
TGGCGCTGATGCTTACCGGGCCTACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044335.1\|WP_169721655.1\|23057_24716_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP044335.1\|WP_169721651.1\|16182_17901_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP044335.1\|WP_017384854.1\|10094_10535_+\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP044335.1\|WP_169721649.1\|13695_15132_-\|DUF2867-domain-containing-protein	unknown	unknown	gnl\|CDD\|187556
NZ_CP044335.1\|WP_063135295.1\|18214_19183_-\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP044335.1\|WP_169721659.1\|28950_29172_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP044335.1\|WP_169721646.1\|7289_9992_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|119365
NZ_CP044335.1\|WP_169721644.1\|5752_6238_+\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP044335.1\|WP_169721656.1\|24712_25669_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP044335.1\|WP_169721643.1\|4622_5756_+\|type-II-secretion-system-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP044335.1\|WP_006174393.1\|29439_29760_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP044335.1\|WP_169721652.1\|19193_20846_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP044335.1\|WP_169721653.1\|20990_21890_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP044335.1\|WP_169721650.1\|15142_16144_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP044335.1\|WP_169721648.1\|12589_13603_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP044335.1\|WP_169721647.1\|10669_12451_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
NZ_CP044335.1\|WP_169721658.1\|26940_28881_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP044335.1\|WP_169721645.1\|6234_7032_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP044335.1\|WP_169721654.1\|22070_22766_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP044335.1\|WP_169721657.1\|25828_26944_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
NZ_CP044335.1\|WP_169721655.1\|23057_24716_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP044335.1\|WP_169721651.1\|16182_17901_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP044335.1\|WP_017384854.1\|10094_10535_+\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	5.32861e-87
NZ_CP044335.1\|WP_169721649.1\|13695_15132_-\|DUF2867-domain-containing-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.74117e-136
NZ_CP044335.1\|WP_063135295.1\|18214_19183_-\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP044335.1\|WP_169721659.1\|28950_29172_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.73071e-46
NZ_CP044335.1\|WP_169721646.1\|7289_9992_+\|glycoside-hydrolase	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	8.65779e-124
NZ_CP044335.1\|WP_169721644.1\|5752_6238_+\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	4.54011e-28
NZ_CP044335.1\|WP_169721656.1\|24712_25669_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	5.34831e-126
NZ_CP044335.1\|WP_169721643.1\|4622_5756_+\|type-II-secretion-system-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	2.1889e-37
NZ_CP044335.1\|WP_006174393.1\|29439_29760_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP044335.1\|WP_169721652.1\|19193_20846_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP044335.1\|WP_169721653.1\|20990_21890_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.04098e-117
NZ_CP044335.1\|WP_169721650.1\|15142_16144_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP044335.1\|WP_169721648.1\|12589_13603_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	2.14553e-52
NZ_CP044335.1\|WP_169721647.1\|10669_12451_+\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	1.9845e-70
NZ_CP044335.1\|WP_169721658.1\|26940_28881_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP044335.1\|WP_169721645.1\|6234_7032_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	4.23198e-40
NZ_CP044335.1\|WP_169721654.1\|22070_22766_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	8.19535e-144
NZ_CP044335.1\|WP_169721657.1\|25828_26944_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>NZ_CP044335.1|WP_169721651.1|16182_17901_-|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFASKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDHKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP044335.1|WP_169721650.1|15142_16144_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANPVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKAITHYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>NZ_CP044335.1|WP_169721649.1|13695_15132_-|DUF2867-domain-containing-protein
MPQRILVLGASGYIGQHLTTALNQQGHQVLAAARNTERLQKLHLPGVTCHNVDLSWPKALTALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALLQTPVKQVIFLSSLRAPEHEQSDHLRARQLTAETLRSARIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLAHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRHRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIRGLKHDLLADDRALRALIPRELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASPAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPRLKVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEEKRENN
>NZ_CP044335.1|WP_169721648.1|12589_13603_-|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTRKAFDLANVRATRRLGEWAVACGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>NZ_CP044335.1|WP_169721647.1|10669_12451_+|PKD-domain-containing-protein
MNKRTLLSVLIAGACVAPLMAQAANLKETSSEPYTIKASDLAKKEKELTDFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFARETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWRGQTSPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNPASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDEGSSETPDETPVTPTPTPSDDETPVVVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDPDGNTLTYTWRSRDGQTVTGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNAPTYYEPGAGLAWAEARTAL
>NZ_CP044335.1|WP_017384854.1|10094_10535_+|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWNKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>NZ_CP044335.1|WP_169721646.1|7289_9992_+|glycoside-hydrolase
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFAPVEVDQAARDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAAGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTSLKENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTIEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSGWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIENVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHRAALRAPAWRPDTDYTTENGVNALLSRGVQPRKIVVGAGMYGRGWTGVHGYTGNNPFTGTATGMVKGTREPGVVDYRQIVNEYKGKPGWEYGYDADAEAPYVFNKTTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGDATPVDPEVTNHAPIASSADQNVSGPVTVTLDGSASSDPDGDAITYKWTPVSGPSVTITNSTKAKATFNVAAATSDQTMVFRLTVTDAKGLSNAIDVQVVNKAPKANRAPVLNPMEAITLESGETYALHARAADPDGDALTYARSVPADMHATGTDSANVNITAPEVSSTSTYTLSVVVSDGKTSVQSNVQVTVNPKAAPAPVPDDEDTNPADDVTPPADDVTPPSDKGSCDAPVDANASKYAAWESSKIYNGGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDTVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>NZ_CP044335.1|WP_169721645.1|6234_7032_+|prepilin-peptidase
MNTFSLMRDACPVGFPIMSAIPGGIVGSFLGVVAERVPGMVMDEGGSGNLLFPASHCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLLLVELISALFFGITARCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGARCGWQALPSIELAAALSGIVGYFAVNNSNKNNLTISFGPYLAFAGIGVFMSQQFAFTF
>NZ_CP044335.1|WP_169721644.1|5752_6238_+|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSTREKIILKICAVAIVGAAVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRREGQTLSFVVNRVNVYELKSWLREINQTTGVRLQKINLTPVDHLSDVKAQVQLTWSRNA
>NZ_CP044335.1|WP_169721643.1|4622_5756_+|type-II-secretion-system-protein-GspL
MKQVLFVRPDSREGGKIMWCESGSERVEVVDSPEMLAEHPLATRFCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDKLHWTVLHKKGADVDAVVIDADRLRAALTRCQEAGLNVIQALPDARLLPVTTGGSTLVAQDDSYWLRLSPHVAGEMEATLLPLLMQKAGVGEVWCYGDAPAKVHVDVQHAWQHPLALIQPQWQTCRVNLLHGEFSLKAGHGRAAKSMKAAMVAAGVLSVGLLLGPRIAMARMLVQQENRVQEEIVRVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLDELENARQSVPAMEIELLEYDAQQNTLTLSVSAQNQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK
>NZ_CP044335.1|WP_063135295.1|18214_19183_-|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSCELLQSVPDIANRIVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP044335.1|WP_169721652.1|19193_20846_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSARAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMARLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPRPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRPVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>NZ_CP044335.1|WP_169721653.1|20990_21890_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISPAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSPAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGTVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP044335.1|WP_169721654.1|22070_22766_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIARVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPCGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFRGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKHD
>NZ_CP044335.1|WP_169721655.1|23057_24716_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENARGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFSDDEGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRTDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRPVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRRGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP044335.1|WP_169721656.1|24712_25669_-|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFILRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGIMLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYAPLDSLIQQVSQATAR
>NZ_CP044335.1|WP_169721657.1|25828_26944_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKARFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLEMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP044335.1|WP_169721658.1|26940_28881_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTTDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSISRALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMARLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVIPVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSRLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP044335.1|WP_169721659.1|28950_29172_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHRGQKSNHASLIVPVEAETVA
>NZ_CP044335.1|WP_006174393.1|29439_29760_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1397572 : 1464022

Enterobacteria_phage(25.0%)

transposase,capsid,lysis,tRNA,integrase

attL 1394293:1394340|attR 1408692:1408739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1394293:1394340	attL	NA	NA	NA	NA
WP_169722553.1\|1397572_1398610_-\|capsid	major capsid protein E	NA	NA	NA	NA
WP_169722554.1\|1398633_1399011_-	hypothetical protein	NA	NA	NA	NA
WP_127341375.1\|1399013_1399229_-	hypothetical protein	NA	NA	NA	NA
WP_169722555.1\|1399789_1400122_-	hypothetical protein	NA	NA	NA	NA
WP_169722556.1\|1400338_1400719_-	hypothetical protein	NA	NA	NA	NA
WP_169722557.1\|1404194_1404755_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_169722558.1\|1404765_1404966_+	hypothetical protein	NA	NA	NA	NA
WP_169724736.1\|1406589_1407225_-	hypothetical protein	NA	NA	NA	NA
WP_169722559.1\|1407302_1408607_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_169722560.1\|1409516_1410635_+	YadA-like family protein	NA	NA	NA	NA
1408692:1408739	attR	NA	NA	NA	NA
WP_071524132.1\|1410831_1411056_+	hypothetical protein	NA	NA	NA	NA
WP_033487338.1\|1411064_1411502_+	hypothetical protein	NA	NA	NA	NA
WP_169722561.1\|1411812_1413189_+	diaminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	4.8e-27	26.4
WP_169722562.1\|1413207_1414674_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_169722563.1\|1414718_1416917_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_169722564.1\|1416916_1417378_-	protein tyrosine phosphatase	NA	NA	NA	NA
WP_169722565.1\|1417365_1418505_-	polysaccharide export protein	NA	NA	NA	NA
WP_047636951.1\|1418987_1419320_+	RcnB family protein	NA	NA	NA	NA
WP_169722566.1\|1419270_1419750_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_169722567.1\|1419839_1420949_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_169722568.1\|1421086_1423120_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	3.6e-55	28.3
WP_015572337.1\|1423227_1423698_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.4e-65	79.4
WP_169722569.1\|1423744_1424464_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_169722570.1\|1424457_1426143_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	7.9e-266	84.8
WP_169722571.1\|1426361_1427102_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	5.6e-91	82.4
WP_017383372.1\|1427171_1427285_+	protein YohO	NA	NA	NA	NA
WP_169722572.1\|1427259_1427997_-	ABC transporter permease	NA	NA	NA	NA
WP_169722573.1\|1427980_1428931_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.3e-07	27.1
WP_062938288.1\|1428923_1430081_-	ABC transporter permease	NA	NA	NA	NA
WP_169722574.1\|1430093_1431011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_169722575.1\|1431147_1433445_-	beta-glucosidase BglX	NA	NA	NA	NA
WP_169722576.1\|1433634_1435392_+	D-lactate dehydrogenase	NA	NA	NA	NA
WP_169722577.1\|1435494_1436049_+	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	3.6e-18	37.2
WP_169722578.1\|1436154_1437078_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_003859296.1\|1437245_1437833_-	YIP1 family protein	NA	NA	NA	NA
WP_169722579.1\|1437990_1438563_+	DedA family protein	NA	NA	NA	NA
WP_169722580.1\|1438657_1439422_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_169722581.1\|1439472_1440891_-	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_015572323.1\|1441223_1442159_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_169722582.1\|1442327_1442723_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_169722583.1\|1442719_1443415_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_169722584.1\|1443543_1444428_+	cytidine deaminase	NA	NA	NA	NA
WP_169722585.1\|1444555_1445266_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_169722586.1\|1446746_1447184_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_169722587.1\|1447222_1448233_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_169722588.1\|1448248_1449769_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.3e-09	31.9
WP_169722589.1\|1449848_1450847_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_169722590.1\|1451141_1452164_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_169722591.1\|1452319_1453477_-	DUF418 family protein	NA	NA	NA	NA
WP_169722592.1\|1453495_1454164_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	1.2e-55	55.8
WP_169722593.1\|1454266_1455415_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_169722594.1\|1455552_1456380_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_169722595.1\|1456647_1458633_+	ligand-gated channel protein	A0A0P0I887	Acinetobacter_phage	2.9e-09	31.9
WP_169722596.1\|1460326_1461589_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.1e-38	97.6
WP_011091026.1\|1461876_1462134_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_015243648.1\|1462066_1462468_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_000608644.1\|1462759_1464022_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044336

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP044337

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP044335

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection