CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046425	Bacteroides dorei strain JR02 chromosome, complete genome	0 crisprs	PrimPol,RT,PD-DExK,DEDDh,cas3,DinG,WYL	0	0	4	4

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

456019 : 495369

Croceibacter_phage(25.0%)

transposase,integrase

attL 448275:448289|attR 496878:496892

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
448275:448289	attL	NA	NA	NA	NA
WP_005636919.1\|456019_457183_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_170272886.1\|457422_458562_-	hypothetical protein	NA	NA	NA	NA
WP_005636926.1\|458594_459605_-	hypothetical protein	NA	NA	NA	NA
WP_080707039.1\|460161_460548_+	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_005636934.1\|460553_460880_+	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_035450349.1\|460876_463411_+	TraG family conjugative transposon ATPase	NA	NA	NA	NA
WP_005636939.1\|463407_463764_+	DUF3876 domain-containing protein	NA	NA	NA	NA
WP_005636941.1\|463760_464390_+	DUF4141 domain-containing protein	NA	NA	NA	NA
WP_005636943.1\|464392_465406_+	conjugative transposon protein TraJ	NA	NA	NA	NA
WP_005636947.1\|465529_466153_+	conjugative transposon protein TraK	NA	NA	NA	NA
WP_005656892.1\|466149_466449_+	DUF3989 domain-containing protein	NA	NA	NA	NA
WP_005636954.1\|466399_467707_+	conjugative transposon protein TraM	NA	NA	NA	NA
WP_005636955.1\|467756_468671_+	conjugative transposon protein TraN	NA	NA	NA	NA
WP_005636956.1\|468667_469255_+	conjugal transfer protein TraO	NA	NA	NA	NA
WP_005636957.1\|469276_469738_+	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_005636958.1\|469734_470214_+	hypothetical protein	NA	NA	NA	NA
WP_005636594.1\|470282_471437_-	hypothetical protein	I6S2L4	Croceibacter_phage	6.1e-76	42.2
WP_005636596.1\|471465_472347_-	hypothetical protein	S0A100	Cellulophaga_phage	3.6e-36	35.0
WP_005656889.1\|472359_473595_-	hypothetical protein	NA	NA	NA	NA
WP_007851225.1\|473627_474368_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_005636601.1\|474354_475176_-	DUF4121 family protein	NA	NA	NA	NA
WP_170272867.1\|475162_475345_-	hypothetical protein	NA	NA	NA	NA
WP_004312011.1\|475666_477340_-\|transposase	IS66-like element ISBf10 family transposase	A0A218MNE7	uncultured_virus	2.1e-37	28.9
WP_004312010.1\|477415_477781_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004319780.1\|477784_478141_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_170272868.1\|478217_478388_-	hypothetical protein	NA	NA	NA	NA
WP_005942846.1\|478669_478960_-	DUF4120 domain-containing protein	NA	NA	NA	NA
WP_005636608.1\|479290_479635_+	hypothetical protein	NA	NA	NA	NA
WP_005840921.1\|479693_480404_-	hypothetical protein	NA	NA	NA	NA
WP_005636610.1\|480405_481107_-	hypothetical protein	NA	NA	NA	NA
WP_008778735.1\|481117_482137_-	molecular chaperone DnaJ	NA	NA	NA	NA
WP_005802673.1\|482150_482360_-	hypothetical protein	NA	NA	NA	NA
WP_005637786.1\|482335_482635_-	hypothetical protein	NA	NA	NA	NA
WP_170272887.1\|482631_483231_-	hypothetical protein	NA	NA	NA	NA
WP_005864587.1\|483278_483776_-	DUF4313 domain-containing protein	NA	NA	NA	NA
WP_005634966.1\|483826_484078_-	hypothetical protein	NA	NA	NA	NA
WP_005828696.1\|484147_485035_-	hypothetical protein	NA	NA	NA	NA
WP_007851204.1\|485038_486181_-	hypothetical protein	NA	NA	NA	NA
WP_005634950.1\|486165_486462_-	hypothetical protein	NA	NA	NA	NA
WP_005640474.1\|486874_487282_+	hypothetical protein	NA	NA	NA	NA
WP_005640472.1\|487794_489030_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_005828681.1\|489103_490309_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_005640468.1\|490576_491944_+	hypothetical protein	NA	NA	NA	NA
WP_005640453.1\|492665_493955_+\|transposase	IS1380-like element ISBvu1 family transposase	NA	NA	NA	NA
WP_005864602.1\|494133_495369_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.4e-33	36.3
496878:496892	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3100532 : 3136292

Helicobacter_phage(33.33%)

integrase,protease

attL 3099252:3099266|attR 3137455:3137469

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3099252:3099266	attL	NA	NA	NA	NA
WP_008665036.1\|3100532_3101666_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_022219044.1\|3101669_3102836_+\|integrase	site-specific integrase	A0A1S5RH00	Helicobacter_phage	5.2e-06	23.8
WP_008665039.1\|3103174_3104608_+	ATP-binding protein	NA	NA	NA	NA
WP_008665040.1\|3104613_3105234_+	hypothetical protein	NA	NA	NA	NA
WP_008665041.1\|3105230_3105644_+	hypothetical protein	NA	NA	NA	NA
WP_008665042.1\|3105891_3106134_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_008665043.1\|3106162_3106636_+	hypothetical protein	NA	NA	NA	NA
WP_157463314.1\|3106603_3106837_-	hypothetical protein	NA	NA	NA	NA
WP_157463313.1\|3106872_3107544_+	hypothetical protein	NA	NA	NA	NA
WP_022219048.1\|3107533_3108751_+	hypothetical protein	NA	NA	NA	NA
WP_008665046.1\|3108761_3109340_+	hypothetical protein	NA	NA	NA	NA
WP_082431359.1\|3110115_3110463_+	PcfJ domain-containing protein	NA	NA	NA	NA
WP_005807974.1\|3110351_3110648_-	hypothetical protein	NA	NA	NA	NA
WP_008665050.1\|3110654_3111416_-\|protease	serine protease	NA	NA	NA	NA
WP_005807978.1\|3111417_3112065_-	hypothetical protein	NA	NA	NA	NA
WP_008665053.1\|3112070_3113711_-	hypothetical protein	NA	NA	NA	NA
WP_005807981.1\|3113714_3114533_-	hypothetical protein	NA	NA	NA	NA
WP_005807983.1\|3114536_3115400_-	hypothetical protein	NA	NA	NA	NA
WP_005807985.1\|3115392_3118875_-	hypothetical protein	NA	NA	NA	NA
WP_005807987.1\|3118877_3120296_-	hypothetical protein	NA	NA	NA	NA
WP_005807989.1\|3120307_3120724_-	hypothetical protein	NA	NA	NA	NA
WP_005807991.1\|3120725_3121907_-	hypothetical protein	NA	NA	NA	NA
WP_005807993.1\|3121932_3122667_-	UpxY family transcription antiterminator	NA	NA	NA	NA
WP_007219414.1\|3123468_3123720_+	hypothetical protein	NA	NA	NA	NA
WP_004289359.1\|3125583_3125751_+	hypothetical protein	NA	NA	NA	NA
WP_004289356.1\|3126164_3126680_+	DUF4313 domain-containing protein	NA	NA	NA	NA
WP_170273017.1\|3126806_3127061_-	hypothetical protein	NA	NA	NA	NA
WP_170272952.1\|3127836_3129135_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_004289352.1\|3129131_3129446_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005776149.1\|3129815_3130013_+	hypothetical protein	NA	NA	NA	NA
WP_008666811.1\|3130024_3130297_+	hypothetical protein	NA	NA	NA	NA
WP_004289349.1\|3130307_3130580_+	hypothetical protein	NA	NA	NA	NA
WP_004289348.1\|3130620_3130998_+	hypothetical protein	NA	NA	NA	NA
WP_004289347.1\|3131233_3131419_+	hypothetical protein	NA	NA	NA	NA
WP_149941956.1\|3132728_3134342_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	6.7e-12	22.1
WP_154577496.1\|3134344_3135286_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_149941957.1\|3135278_3136292_+\|integrase	tyrosine-type recombinase/integrase	S6C485	Thermus_phage	2.0e-06	23.2
3137455:3137469	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3326721 : 3356455

unidentified_phage(44.44%)

transposase,integrase,tRNA

attL 3334103:3334116|attR 3360472:3360485

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032536584.1\|3326721_3327702_-\|transposase	IS982-like element IS1187 family transposase	NA	NA	NA	NA
WP_087336888.1\|3327792_3329022_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.5e-32	36.3
WP_132040141.1\|3329050_3329293_-	hypothetical protein	NA	NA	NA	NA
WP_132040699.1\|3329685_3330045_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_132040139.1\|3330034_3332077_+	bifunctional DNA primase/helicase	NA	NA	NA	NA
WP_132040137.1\|3332089_3332443_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_132040135.1\|3332974_3334300_+	AAA family ATPase	NA	NA	NA	NA
3334103:3334116	attL	NA	NA	NA	NA
WP_170272960.1\|3334330_3335614_+	serine/threonine protein kinase	I6PD73	Cronobacter_phage	1.6e-16	30.4
WP_132040697.1\|3335703_3335850_-	DNA methylase	NA	NA	NA	NA
WP_132040131.1\|3336198_3336666_+	TraG family conjugative transposon ATPase	NA	NA	NA	NA
WP_132040129.1\|3336671_3336944_+	DUF3876 domain-containing protein	NA	NA	NA	NA
WP_170272961.1\|3337027_3337261_+	DUF4141 domain-containing protein	NA	NA	NA	NA
WP_162614061.1\|3337300_3337462_+	hypothetical protein	NA	NA	NA	NA
WP_032535361.1\|3337811_3339617_+	maturase	A0A0U4J920	Pseudomonas_phage	5.0e-32	29.7
WP_170272962.1\|3339609_3340146_+	conjugal transfer protein TraI	NA	NA	NA	NA
WP_132040125.1\|3340147_3341155_+	conjugative transposon protein TraJ	NA	NA	NA	NA
WP_132040123.1\|3341184_3341808_+	conjugative transposon protein TraK	NA	NA	NA	NA
WP_132040121.1\|3342093_3343416_+	conjugative transposon protein TraM	NA	NA	NA	NA
WP_132040695.1\|3343463_3344474_+	conjugative transposon protein TraN	NA	NA	NA	NA
WP_170272963.1\|3344475_3345060_+	conjugal transfer protein TraO	NA	NA	NA	NA
WP_132040119.1\|3345063_3345945_+	DNA (cytosine-5-)-methyltransferase	A0A1B1IVS4	uncultured_Mediterranean_phage	3.4e-34	41.3
WP_132040117.1\|3345959_3346403_+	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_132040115.1\|3346399_3346969_+\|tRNA	tRNA (adenine-N(6)-)-methyltransferase	A0A0K0KVF7	Prochlorococcus_phage	4.2e-46	50.9
WP_132040113.1\|3347086_3347311_-	DUF3873 family protein	NA	NA	NA	NA
WP_132040111.1\|3347339_3347927_-	hypothetical protein	NA	NA	NA	NA
WP_132040109.1\|3347946_3348204_-	hypothetical protein	NA	NA	NA	NA
WP_132040107.1\|3348222_3348441_-	hypothetical protein	NA	NA	NA	NA
WP_170272964.1\|3348447_3348936_-	DUF1273 family protein	A0A1P8L625	Pectobacterium_phage	1.1e-13	35.1
WP_132040103.1\|3348947_3349211_-	hypothetical protein	NA	NA	NA	NA
WP_132040101.1\|3349786_3350059_+	hypothetical protein	NA	NA	NA	NA
WP_132040097.1\|3350647_3350839_+	hypothetical protein	NA	NA	NA	NA
WP_132040093.1\|3351077_3351416_-	hypothetical protein	NA	NA	NA	NA
WP_132040091.1\|3351418_3352336_-	ribonucleotide-diphosphate reductase subunit beta	NA	NA	NA	NA
WP_132040089.1\|3352419_3352833_-	hypothetical protein	NA	NA	NA	NA
WP_170272965.1\|3352871_3353489_-\|integrase	integrase catalytic domain-containing protein	NA	NA	NA	NA
WP_132040085.1\|3353506_3353761_-\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	3.1e-09	51.5
WP_007831920.1\|3353988_3355218_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.9e-23	31.1
WP_132040083.1\|3355237_3356455_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.1e-14	26.9
3360472:3360485	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4698387 : 4770603

Bacillus_phage(33.33%)

integrase

attL 4698275:4698334|attR 4771663:4772781

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4698275:4698334	attL	NA	NA	NA	NA
WP_149941957.1\|4698387_4699401_-\|integrase	tyrosine-type recombinase/integrase	S6C485	Thermus_phage	2.0e-06	23.2
WP_154577496.1\|4699393_4700335_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_149941956.1\|4700337_4701951_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	6.7e-12	22.1
WP_007840925.1\|4702418_4705589_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_007832961.1\|4705608_4707564_+	SusD/RagB family nutrient-binding outer membrane lipoprotein	NA	NA	NA	NA
WP_008654582.1\|4708946_4712102_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_005841087.1\|4712123_4714094_+	SusD/RagB family nutrient-binding outer membrane lipoprotein	NA	NA	NA	NA
WP_005841085.1\|4714405_4714870_-	hypothetical protein	NA	NA	NA	NA
WP_007832955.1\|4714914_4716567_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	8.8e-60	31.9
WP_007832953.1\|4716651_4717206_-	cupin domain-containing protein	NA	NA	NA	NA
WP_087338733.1\|4717452_4717944_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_087338730.1\|4718204_4718621_-	DUF1893 domain-containing protein	NA	NA	NA	NA
WP_087338728.1\|4718633_4720160_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_007832943.1\|4721756_4722653_-	alkaline phosphatase	NA	NA	NA	NA
WP_007832942.1\|4722924_4723698_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_007832940.1\|4723882_4725007_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_005841042.1\|4725020_4725989_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_007832937.1\|4725994_4727203_-	argininosuccinate synthase	NA	NA	NA	NA
WP_007832935.1\|4727310_4727868_-	N-acetyltransferase	NA	NA	NA	NA
WP_007832933.1\|4727891_4728368_-	arginine repressor	NA	NA	NA	NA
WP_007832931.1\|4728675_4730154_+	rhamnulokinase	NA	NA	NA	NA
WP_085930143.1\|4730193_4731450_+	L-rhamnose isomerase	NA	NA	NA	NA
WP_007832930.1\|4731543_4732563_+	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_008654569.1\|4732648_4733458_+	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_007832928.1\|4733816_4734314_+	DUF4251 domain-containing protein	NA	NA	NA	NA
WP_007832927.1\|4734414_4735929_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_007841057.1\|4736096_4737716_-	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_008654568.1\|4737727_4740799_-	TonB-dependent receptor	NA	NA	NA	NA
WP_007832924.1\|4740939_4745100_-	response regulator	W8CYM9	Bacillus_phage	2.2e-11	32.5
WP_007832923.1\|4745247_4746168_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_007855245.1\|4746175_4747174_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_008654565.1\|4747199_4748057_-	ion transporter	NA	NA	NA	NA
WP_008654564.1\|4748172_4751268_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	5.5e-148	34.3
WP_087338725.1\|4751667_4754235_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_087338722.1\|4754289_4754817_+	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_087338720.1\|4754813_4755824_+	FecR domain-containing protein	NA	NA	NA	NA
WP_007832913.1\|4755945_4757187_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_008672805.1\|4757389_4757611_+\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_007832909.1\|4757680_4758610_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_087338718.1\|4758633_4759482_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.2e-50	42.9
WP_007848826.1\|4759525_4760389_+	aldo/keto reductase	A0A1V0SKP9	Klosneuvirus	9.3e-29	27.9
WP_007832903.1\|4760395_4761145_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.9e-22	32.8
WP_087338740.1\|4761171_4761729_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_007832896.1\|4762341_4763343_-	glycosidase	NA	NA	NA	NA
WP_007841087.1\|4763375_4764674_-	MFS transporter	NA	NA	NA	NA
WP_007832894.1\|4764797_4766813_-	glycoside hydrolase family 97 protein	NA	NA	NA	NA
WP_149941956.1\|4768045_4769659_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	6.7e-12	22.1
WP_154577496.1\|4769661_4770603_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
4771663:4772781	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP046425.1|WP_004291533.1|687541_687958_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP046425.1|WP_004289410.1|3064204_3064630_+|hypothetical-protein

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Acr_ID: NZ_CP046425.1|WP_004295434.1|3498092_3498548_+|hypothetical-protein

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Acr_ID: NZ_CP046425.1|WP_004310304.1|5050938_5051358_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP046425.1|WP_004291533.1|687541_687958_+|hypothetical-protein

687541_687958_+

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5571428571428572	0.9855072463768116	0.9929078014184397

NZ_CP046425.1|WP_004289410.1|3064204_3064630_+|hypothetical-protein

3064204_3064630_+

141 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	1.0	1	1.0

NZ_CP046425.1|WP_004295434.1|3498092_3498548_+|hypothetical-protein

3498092_3498548_+

151 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5819672131147541	0.8145695364238411	0.8652482269503546

NZ_CP046425.1|WP_004310304.1|5050938_5051358_-|hypothetical-protein

5050938_5051358_-

139 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.574468085106383	0.9928057553956835	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046425

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information