CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046428	Bacteroides dorei strain JR05 chromosome, complete genome	2 crisprs	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL,PD-DExK,RT,PrimPol,DinG,DEDDh,csa3	4	4	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046428_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046428_1

946499-946799

TypeI

I-C:NA

Consensus_repeat	Method
AAGTCACACCCTACGTGGGTGTNNGTGGATTGAAAC	CRT
GTCACACCCTACGTGGGTGTGTGGATTGAAACT	CRISPRCasFinder

4 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP046428_1

>merge|NZ_CP046428|1|946499-946799|CRT,CRISPRCasFinder
GAGTCACACCCTACGTGGGTGTGTGGATTGAAACCAAGAAACTTGTTTTTTAAATAGATAGCTGTTAAGTCACACCCTACGTGGGTGTGTGGATTGAAACTATTTATGTCCATCTCTACATTGTCAACTAATACGAGGTCACACCCTACGTGGGTGTGTGGATTGAAACTCTTGGACAAGGAGAAAGACAAGCCCGACTCCAAAGTCACACCCTACGTGGGTGTGTGGATTGAAACTTTGATTACTTGTTTTACTTCTGCTTCCATAAAGTCACACCCTGCGTGGGAATATATGGATTGGA

>NZ_CP046428|1|1|946499-946799|CRT
GAGTCACACCCTACGTGGGTGTGTGGATTGAAAC	CAAGAAACTTGTTTTTTAAATAGATAGCTGTT
AAGTCACACCCTACGTGGGTGTGTGGATTGAAAC	TATTTATGTCCATCTCTACATTGTCAACTAATACG
AGGTCACACCCTACGTGGGTGTGTGGATTGAAAC	TCTTGGACAAGGAGAAAGACAAGCCCGACTCCA
AAGTCACACCCTACGTGGGTGTGTGGATTGAAAC	TTTGATTACTTGTTTTACTTCTGCTTCCATA
AAGTCACACCCTGCGTGGGAATATATGGATTGGA

>NZ_CP046428|1|1|946501-946735|CRISPRCasFinder
GTCACACCCTACGTGGGTGTGTGGATTGAAACC	AAGAAACTTGTTTTTTAAATAGATAGCTGTTAA
GTCACACCCTACGTGGGTGTGTGGATTGAAACT	ATTTATGTCCATCTCTACATTGTCAACTAATACGAG
GTCACACCCTACGTGGGTGTGTGGATTGAAACT	CTTGGACAAGGAGAAAGACAAGCCCGACTCCAAA
GTCACACCCTACGTGGGTGTGTGGATTGAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046428.1\|WP_038604774.1\|941746_943468_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP046428.1\|WP_038607545.1\|949921_950959_-\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE	unknown	unknown	gnl\|CDD\|274880
NZ_CP046428.1\|WP_038607542.1\|957579_958119_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239474
NZ_CP046428.1\|WP_038604771.1\|947250_948441_-\|[FeFe]-hydrogenase-H-cluster-maturation-GTPase-HydF	unknown	unknown	gnl\|CDD\|274853
NZ_CP046428.1\|WP_038607548.1\|941057_941750_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP046428.1\|WP_008655266.1\|935253_936102_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380625
NZ_CP046428.1\|WP_008655269.1\|945012_946035_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP046428.1\|WP_008655271.1\|951158_952622_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274983
NZ_CP046428.1\|WP_007831010.1\|956805_957390_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP046428.1\|WP_007843553.1\|943489_944341_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP046428.1\|WP_038604759.1\|958243_959659_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP046428.1\|WP_007855618.1\|946044_946335_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP046428.1\|WP_007843558.1\|940195_941056_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NZ_CP046428.1\|WP_038604780.1\|936262_937627_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP046428.1\|WP_007843550.1\|944350_945016_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP046428.1\|WP_005842327.1\|953316_954954_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP046428.1\|WP_038604777.1\|937959_940185_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP046428.1\|WP_005842331.1\|953002_953275_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP046428.1\|WP_007831003.1\|955417_956770_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP046428.1\|WP_038604768.1\|948490_949909_-\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG	unknown	unknown	gnl\|CDD\|274879

Protein	Function_ID	Function_description	E-value
NZ_CP046428.1\|WP_038604774.1\|941746_943468_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP046428.1\|WP_038607545.1\|949921_950959_-\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE	gnl\|CDD\|274880	TIGR03956, iron-only_hydrogenase_maturation_rSAM_protein_HydE, [FeFe] hydrogenase H-cluster radical SAM maturase HydE. This model describes the radical SAM protein HydE, one of a pair of radical SAM proteins, along with GTP-binding protein HydF, for maturation of [Fe] hydrogenase in Chlamydomonas reinhardtii and numerous bacteria. [Protein fate, Protein modification and repair].	0
NZ_CP046428.1\|WP_038607542.1\|957579_958119_+\|carbonic-anhydrase	gnl\|CDD\|239474	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.64668e-59
NZ_CP046428.1\|WP_038604771.1\|947250_948441_-\|[FeFe]-hydrogenase-H-cluster-maturation-GTPase-HydF	gnl\|CDD\|274853	TIGR03918, hydrogenase_maturation_GTPase_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF. This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity. [Protein fate, Protein modification and repair].	0
NZ_CP046428.1\|WP_038607548.1\|941057_941750_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	6.40743e-83
NZ_CP046428.1\|WP_008655266.1\|935253_936102_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380625	cd19970, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	3.08486e-99
NZ_CP046428.1\|WP_008655269.1\|945012_946035_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	7.00337e-169
NZ_CP046428.1\|WP_008655271.1\|951158_952622_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	0
NZ_CP046428.1\|WP_007831010.1\|956805_957390_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.21416e-14
NZ_CP046428.1\|WP_007843553.1\|943489_944341_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.17062e-151
NZ_CP046428.1\|WP_038604759.1\|958243_959659_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.41122e-19
NZ_CP046428.1\|WP_007855618.1\|946044_946335_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.94761e-26
NZ_CP046428.1\|WP_007843558.1\|940195_941056_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	7.56054e-18
NZ_CP046428.1\|WP_038604780.1\|936262_937627_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	8.92584e-146
NZ_CP046428.1\|WP_007843550.1\|944350_945016_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.59196e-24
NZ_CP046428.1\|WP_005842327.1\|953316_954954_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP046428.1\|WP_038604777.1\|937959_940185_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.21741e-50
NZ_CP046428.1\|WP_005842331.1\|953002_953275_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.52028e-44
NZ_CP046428.1\|WP_007831003.1\|955417_956770_+\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	1.01859e-111
NZ_CP046428.1\|WP_038604768.1\|948490_949909_-\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG	gnl\|CDD\|274879	TIGR03955, iron-only_hydrogenase_maturation_rSAM_protein_HydG, [FeFe] hydrogenase H-cluster radical SAM maturase HydG. This model describes the radical SAM protein HydG. It is part of an enzyme metallocenter maturation system, working together with GTP-binding protein HydF and another radical SAM enzyme, HydE, in H-cluster maturation in [FeFe] hydrogenases. [Protein fate, Protein modification and repair].	0

>NZ_CP046428.1|WP_007855618.1|946044_946335_+|CRISPR-associated-endonuclease-Cas2
MYILVTYDVDTTSKEGARRLRCVAKACLDYGQRVQNSVFECVVTEAQYSLLKGRVRDIIDMSLDSVRFYILSKNENKRVEVIGVETAYKVEEALII
>NZ_CP046428.1|WP_008655269.1|945012_946035_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTTPEAYLSKDGLNVVISVQQEEVFRIPVINIEGIVTFGYMGASPGVMKLCSDNGISLTFLSPQGRFISRVQGATKGNVLLRKKQYQLSDDASWSLHVVRLMIGGKIQNYRNILRRYIRDYGENEDINRAVQVLERAKRDVLKAQDKTELIGYEGMASNAYFEVLPILILNQKTDFPFHGRNRRPPKDAVNAMLSFAYTLIANDVAAALETVGLDPYVGFLHTLRPGRTSLALDMMEELRAYLGDRFILSLINKRQISVKDFLFQGDNGVVMTDKGKKTFITAWQARKREVIIHPYLNEKVEIGLLPYVQAMLMARYIRQDIDDYPVFLIK
>NZ_CP046428.1|WP_007843550.1|944350_945016_+|CRISPR-associated-protein-Cas4
MYNEDDMLMLSGIQHFRFCPRQWALIHIEQQWGDNRLTIEGQILHKHVDDPFYRQKCGDQITLRAVNIASRELGLYGISDAIELFPSSSLENTILHPNYPGRWQPVAVEYKHGKPKRNEVDEVQLAAQIMCIEEMYAIHIPYGAFFYGELRHRVNVDITEELRDIVRQCARDMHDIFSKAVIPKAEYGKHCDKCSLKDICMPEMVNNCTSVDNYLTKNLYL
>NZ_CP046428.1|WP_007843553.1|943489_944341_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSELKNRIDFVYIFDVKDGNPNGDPDAGNLPRVDAETGMGLVTDVCLKRKVRNYVQIAKGLVNGFDIFIKEKAVLNTLIDNAHDDSEVKNAKDKIEAARRFMCNNYFDIRTFGAVMSTGKNAGQVRGPIQFTFARSIDPIAVAEHSITRMAVATEKEAEKQDGGNRTMGRKATIPYGLYVCHGFISANLAQQTGFSEEDLELFWNALKNMFDVDRSAARGLMSAQKLIVFKHDSILGNAPANKLFELVKVEKVCDGAPRSFIDYSVTIDKENAPSNVTIEELI
>NZ_CP046428.1|WP_038604774.1|941746_943468_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILKALYDYYHRSGDDVAPFGLEYKEIGFIIVIDRCGNFLRFEDRRIDKKSAQQFLVKKSVSRSSAPVANYLYDNCKYVFGYSDKGDMEKIRKYFEVFKAKVKDIYDAFPDNEDIKAVYAFYQQDHSFIVGAMQKDSLWDDIAKNLNKKYSTFSFLIEGDTKIVASKTELINLFEENHGVVGNLCLITGRYSKVVEITTATKILGSQETAKLVAFQVNSGYDSYGKSKGYNAPISEEAEFAYTTALNHLLRSDSHNRFMVGSRTYLFWASSNSEASKESENSLFSLLGRIEEENDDPNRRIKLVYDTFQSIYNGKLSANDDDKFFILGLAPNSARIAVVYWNEMPLREFAGLISKHFTDMEMVDTRKDKKPYLGLHSILGNVTLGGKSSDATPNLPDAVVRSIFQGLPYPASLFQACIRRIRTEQSVNIVRAAIIKAYLNRLNENNNHKKLDVMLDKENQNQGYLCGRLFAVLDKIQEDANGIHSIRERYMNAASATPSMVFATVLNLSTHHIEKLNPGGQVFYEKLKQEIISKLDAKGFPPHLNLQDQGRFFVGYYHQRQDLFMNKENKEME
>NZ_CP046428.1|WP_038607548.1|941057_941750_+|type-I-C-CRISPR-associated-protein-Cas5
MEYTDKEYCLEVWGDWACFTRPELKVERVSYDVITPSAARAIFEAILFKRYAMRWQITKIEVLRPIKWATIRRNEVGAVVNSSMKPIYIDDGKTRQQKNTLLLLDVRYRIYAKLVFIPVKDRPKEAFAKHQPSADENPMKYYQMFERRASQGQCFTQPYLGCREFSANWKYIESTDNLDNPLAEDRDFGIMLYDMDFEENPQKPNAMFYRAQMKKGVIVVPDKDSEEVLR
>NZ_CP046428.1|WP_007843558.1|940195_941056_+|Bro-N-domain-containing-protein
MTKKETLKLFEERKVRTVWDDEKEKWYFSIVDVVSVLTDSVDATAYWRKLKQRLKEEGNETVTNCHGLKMKAADGKMRLTDVADTEQLLRIIQSIPSPKAEPFKQWMAHVASERLDQMQDPELSIEQAMMDYKRLGYSDNWINQRLKSIEIRKDLTDQWKLHNVEEGVQYATLTDIIYQQWAGKSAKEYKQFKGLKKENLRDNMTNEELVLNMLAELSTTSITKAKNPQTLGENMQCAADGGDVARVAREQLEQKTGREVVTPLSAKRFFEGQKPEDLLENKENDE
>NZ_CP046428.1|WP_038604777.1|937959_940185_+|CRISPR-associated-helicase/endonuclease-Cas3
MIDEKQLISHLYQNRENGQWMIQTNDEHQKGVADMAASFAGQFGLPSWGRALGLLHDKGKERAAFQQYIRKMNGLPTSDKKRYDDHTHAFVGGILAKELMGKDVSHLLVNQIISHHTGLHNFGDVENILKERLLSEEINEGDISINKPLLFQEFIDSPFSKSKVEWKHFHHLSRMLFSCLVDADRLDTERFMDVESWRKRGNLATLVDLLPQLEVYMQKLQSNAADTKVNRIRRQVKEQCSRTSSSEKGFYSLTVPTGGGKTLSSLLWAMKHAVSHSMNRIIIAIPYTSIIVQTAGLLKEIFGEENVLEHHSNFDPDDIKDEENREKAKLATENWNYPIIVTTNVQLFESMFSNKTSDCRKLHNMANSILVLDEVQMLPTGFLQPIVDALKAYQEMFGISVLFTTASQPVLSGLIEGTNPKADFKGIEHIKEIIPEEFALHDQLRRVKLAIDDTGRTYDEIAAKMSEYNKVLCIVNTRKDAKELYDRLPNDGVKLHLSRMMCPAHLHETIGKIKTLLKDESLPIVRVIATQLVEAGVDIDFPVVFRQEAGLDSVLQAAGRCNREGRSAMGHTFVFSLAAEKRNPFGSMADSNNARLNLPEDSDWFAPSTMKAYFCQLYSRKQTFDEKDIKHWLYKPTELCFETASKEFRLIDDTSINVIVNWENSMELIEQLKESGCTYSLVKQLAKFTVGIRSYDFKQLKGYGLVEEILEGIYVLADRSQYNKATGLSLDNHWLEEVLMI
>NZ_CP046428.1|WP_038604780.1|936262_937627_+|histidine--tRNA-ligase
MAAKPGIPKGTRDFSPVEMAKRNYIFNTIRDVFHLFGYQQIETPSMENLSTLMGKYGDEGDKLLFKIQNSGDYFNGITDEELLSRNAVKLASKFCEKGLRYDLTVPFARYVVMHRDEISFPFKRYQIQPVWRADRPQKGRYREFYQCDADVVGSNSLLNEVELVQMIDRVFGKFGVRVSIKINNRKILTGIAEIIGEADKIVDITVAIDKLDKIGLENVNAELASKGIPQEAIDKLQPIILLSGSNEEKLETLKTVLAASETGMKGVEESEFILKTVSTLGVKSEVELDLTLARGLNYYTGAIFEVKALDVQIGSISGGGRYDNLTGVFGMDGMSGVGISFGADRIFDVLNQLDLYPKEAVNGTELLFVNFGDKEAAYCLPILAKVRETGVRAEIYPDAAKMKKQMGYANDKQIPFVAIVGENEMNEGKLTLKNMATGEQSLVTPDELLAVVKA
>NZ_CP046428.1|WP_008655266.1|935253_936102_+|substrate-binding-domain-containing-protein
MKRNYKIGLVMKSLQADFFKVMKEGAIQYAAPLPFLDLVCVGTATQTEVKEQIDLMYSLIHQQVDAIVLVPIDSKALVQPAVEAVRKGIPVINIDIQLDAQLLEQAGVEVAFVGPDNFAAAYEVGKLLGKKLRNEDKVAIIEGLAAADNARQRKRGFIKAIEEKGLRLVASEPADWETEKAAEVFQAMWMRYPDLKAVYCSNDAMALGVLQQMQEKKCYLPVVGFDNDAVMKEFLSTGKLVATADIFSSQMAVRGIEFALDVLEGRIENRGVHSTAYEIIKQ
>NZ_CP046428.1|WP_038604771.1|947250_948441_-|[FeFe]-hydrogenase-H-cluster-maturation-GTPase-HydF
MSLNNTPSANRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPGFDDEGELGEMRIIRTLKAIERTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKADIRKDIASTLLRIEKDCGQKPLVISAKERTGIKKIHQAILEKLPADFGQQTITGNLAKEGDLVLLVMPQDIQAPKGRLILPQVQTMRELLDKKCLVVSCTTDQIASTLQALSRPPKLIITDSQVFHTVYEQKPADSLLTSFSVLMAGYKGDIHHYIEGASAIDCLTPQSRVLIAEACTHAPATEDIGRVKLPRMLRKKIGEELQIDIVAGTDFPEDLTPYHLIIHCGACMFNRKYVLNRIDNARKQQIPMTNYGVAIAHLNGILDKIAY
>NZ_CP046428.1|WP_038604768.1|948490_949909_-|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG
MYKADSKIAEEFIDHQEILETLEYARSNKSNRALIEQLIDKAARCKGLSHREAALLLECDQPDLIERIFHLAQEIKHKFYGNRIVMFAPLYLSNYCVNGCVYCPYHLKNKTIARKKLTQEEIRKEVIALQDMGHKRLALEAGEDPLRNPIEYILESIRTIYSIKHKNGAIRRVNVNIAATTVENYRKLKDAGIGTYILFQETYHKENYEALHPTGPKSKYAYHTEAMDRAMEAGIDDVGLGVLFGLNTYRYDFVGLLMHAEHLEATFGVGPHTISVPRICPADDIATQDFPDAISDEIFCKIVAVIRIAVPYTGMIISTRESAATRRKVLNLGISQISGGSRTSVGGYAIPETPEENSAQFDISDTRTLDEVVNWLLDLGHIPSFCTACYREGRTGDRFMSLVKSGQIANCCAPNALMTLKEYLEDYATADTRAKGIQLIKKELEHIPNPKIKEIATRNLKKIEEGKRDFRF
>NZ_CP046428.1|WP_038607545.1|949921_950959_-|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE
MKQLIDKLRHKHSLTGEEYAILLTCQDADTLMYLQQQAQEVTLAHFGNAIFIRGLIEVGNRCRNNCYYCGIRKGNPAVARYALKRETILECCREGYALGFRTFVMQGGEDPALTDEWIEATVAAIRNEFSDCAITLSLGEKSREAYERFFRAGANRYLLRHETHNEQHYRKLHPEEMSLKHRLQCLQWLKEIGYQTGTGIMVGSPGQTLPHLVEDLLFIEQFHPQMIGIGPFIPHHETPFGMEPAGSVEMTLKLLSLFRLMHPSALIPSTTALATLSPDGREKGILAGANVVMPNLSPREQREKYALYDNKAAFGAEAAEGLRNLAQRLETIGYRISTDRGDYNH
>NZ_CP046428.1|WP_008655271.1|951158_952622_-|4Fe-4S-dicluster-domain-containing-protein
MAFTNNIMIVRHRLLTELVKLWKNGELTTDKIDRLPLELSPRRSKHAGRCCVHKERAVWKYKSLPLLGLDMDDETDELTPLSEYAARAIERANNGKPKDNIMCVIDEACSACVQINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCMNACPFGAIFEISQTFDVLQRIRKGEQVVAIVAPSILGQFSTTIEQVYGAFRQIGFTDIIEVAQGAMSTVEHEAHELIEKLEEGQKFMTTSCCPSYIELVNKYIPDMKKYVSGTGSPMYYAARIAKEKYPDAKIVFVGPCVAKRKEAQRDEAVDFVMTFEEVSSIFDAFEVNLEIVQPYAMEFSSVREAHGFAQAGGVMGAVKAFLKMEADKINAIQVSDLNKKNIGTLRAYAKSGKAPGQFIEVMACEGGCITGPSTHSGSNGKRQLVQELAKQEKTY
>NZ_CP046428.1|WP_005842331.1|953002_953275_+|co-chaperone-GroES
MNIKPLADRVLILPAPAEEKTIGGIIIPDTAKEKPLQGEVVAIGNGTKDEEMVLHVGDQVLYGKYSGTELEHDGKKYLIMRQSDVLAVLG
>NZ_CP046428.1|WP_005842327.1|953316_954954_+|chaperonin-GroEL
MAKDIKFNIDARDELKKGVDELANAVKVTLGPKGRNVIIEKKFGAPHITKDGVTVAKEVELADAFQNTGAQLVKSVASKTGDDAGDGTTTATVLAQSIVGVGLKNVTAGANPMDLKRGIDKAVAKVVESIKSQAEMVGDNYDKIEQVAAVSANNDPTIGKLIADAMRKVSKDGVITIEEAKGTDTTIGVVEGMQFDRGYLSAYFVTDTEKMECVMEHPYILIYDKKISNLKDFLPILEPAVQSGRPLLVIAEDVDSEALTTLVVNRLRSQLKICAVKAPGFGDRRKAMLEDIAVLTGGIVISEEKGLKLEQATLEMLGTCDKVTVSKDNTTIVNGAGAKENIQERINQIKAEIKNTTSDYDKEKLQERLAKLSGGVAVLYVGAASEVEMKEKKDRVDDALCATRAAIEEGIVPGGGVAYIRASEALEGLKGDNEDETTGIEIIKRAIEEPLRQIVANAGKEGAVVVQKVREGKGDFGYNARTDVYENLHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAPGMGGMGGMM
>NZ_CP046428.1|WP_007831003.1|955417_956770_+|MATE-family-efflux-transporter
MKDSIDFGSMEIPKLFRKLLIPTVLGMVFSAVFVITDGIFVGQGIGSDALAAVNITAPLFLISTGIGLMFGVGASVVASIHLSQGKLKAARINVTQAVVVSSLFLAVLWGVVCLFAPQVAVWLGSSERLLPLAVEYMYWFLPFLVFSALLSSGMFFVRLDGSPNYAMLCNAIPAVVNILLDYVFIFIFKWGMMGAALATSLGYILGAGMIVVYLSRRKNVIHFCRVKLSKKSMRLTWRNVRYMCHLGASTFLCEAAIACMMFAGNYVFIHYLGEDGVAAFSIACYFFPIIFMVYNAIGQSAQPILSYNFGAGDAMRVRSAFRLALGTAVTCGLVFFALTALFNHQIVAMFIDRSYPAYDIAVAGLPLFASGFIFFAVNIVSIGYFQSVERARPAMMITVLRGFVFMVLCLFGLPLLLKVPGIWLAVPLAEILTFLVIMAIYYRKHQWVRR
>NZ_CP046428.1|WP_007831010.1|956805_957390_+|Crp/Fnr-family-transcriptional-regulator
MDAFIQKFCEKYSLPIALSLQLLDNMEKFTFRKGDFLVQEGGRNSNFYIVSKGIWRGHYLNDGVDVSVWFASEGEAIFSSWGYVENTASLVSIEAMCDSELYGISKAKLEVLYAESVELANFGRRLFEQQLLGLESWMITGGSPRAKERYLTLLEENPELLQYVPLKHIASYLWITPQSLSRIRAELGRRKKDQ
>NZ_CP046428.1|WP_038607542.1|957579_958119_+|carbonic-anhydrase
MIDDILEFNKKFIESKGYEKYITNKYPDKKIAILSCMDTRLTELLPAALGIKNGDVKIIKNAGGVISHPFGSVIRSLMVAIYELGVKEVMVVAHSDCGACHMNSNEMIEHMKARGIKQETIDMIRFCGVDFGAWLDGFEDTEKSVKGTVRAIMEHPLIPEDIMVRGFIIDSVTGELTKV
>NZ_CP046428.1|WP_038604759.1|958243_959659_-|Gfo/Idh/MocA-family-oxidoreductase
MIKNLSTFFVGIALLCLAGCTPIPKETTATKEYTPLEVPVPERPAGQQDVIELITPKLDTVRVGFIGLGMRGPSAVERWTHIPGTKIVALCDLLPENAEKAQKIVTNAGMEAPALYSGSEDAWKQLCERNDIDLVYIATDWKHHAEMGIYAMEHGKHAAIEVPAAMSLDEIWALINTSEKTRKHCMQLENCVYDFFELTTLNMAQKGLFGEVLHVEGSYIHNLEEFWPYYWNNWRLDYNREFRGDIYATHGLGPACQLLNIHRGDRMKTLVAMDTKAVTGPELVKQYQKEEAPDFQNGDHTMTFIRTENGKTIHIQHDVMNPRPYSRMYQLTGTKGFANKYPIEQYCFRPDQIDSTSIPDHENLSMHSAVPEKVKETLMSQYKHPIHQELEETAKKIGGHGGMDFIMDYRLVYCLRNGLPLDMDVYDLAEWCCMADLTRLSIENGNAPVAVPDFTRGNWNKVDGYHHAFAQ

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Crispr_ID: NZ_CP046428_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046428_2

1908362-1908453

Orphan

Consensus_repeat	Method
TTGCTTATTCATTTGGTTATTCATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046428_2

>merge|NZ_CP046428|2|1908362-1908453|CRISPRCasFinder
AAGGTTATTCACTTGCTTATTCATTTGGTTATTCATTTAAGCTATTACAAAAACGAAATGTTTTGATTGCTTATTCATTTGGTTATTCATTT

>NZ_CP046428|2|2|1908362-1908453|CRISPRCasFinder
AAGGTTATTCACTTGCTTATTCATTT	GGTTATTCATTTAAGCTATTACAAAAACGAAATGTTTTGA
TTGCTTATTCATTTGGTTATTCATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046428.1\|WP_004325648.1\|1913276_1913954_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223543
NZ_CP046428.1\|WP_004327294.1\|1908029_1908242_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_005932418.1\|1909697_1909919_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_004326986.1\|1914190_1915096_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_004327295.1\|1908641_1909061_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP046428.1\|WP_004326987.1\|1913950_1914187_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_005851535.1\|1901721_1902765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_005851538.1\|1902987_1904265_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_005851529.1\|1899827_1900037_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_007832427.1\|1897315_1897609_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224583
NZ_CP046428.1\|WP_005932412.1\|1912875_1913274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_004327296.1\|1909196_1909388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_005851541.1\|1904252_1904975_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NZ_CP046428.1\|WP_038608099.1\|1898336_1899434_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|223328
NZ_CP046428.1\|WP_004327297.1\|1909507_1909708_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_005851526.1\|1899550_1899772_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046428.1\|WP_004326989.1\|1912009_1912879_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NZ_CP046428.1\|WP_038607317.1\|1900122_1901595_+\|flippase	unknown	unknown	gnl\|CDD\|240533
NZ_CP046428.1\|WP_170267689.1\|1905977_1907675_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|133014
NZ_CP046428.1\|WP_004327299.1\|1909934_1911974_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366234

Protein	Function_ID	Function_description	E-value
NZ_CP046428.1\|WP_007832427.1\|1897315_1897609_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	2.7447e-18
NZ_CP046428.1\|WP_170267689.1\|1905977_1907675_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|133014	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide.	1.13206e-65
NZ_CP046428.1\|WP_038608099.1\|1898336_1899434_+\|transcriptional-regulator	gnl\|CDD\|223328	COG0250, NusG, Transcription antiterminator [Transcription].	4.287e-05
NZ_CP046428.1\|WP_004327295.1\|1908641_1909061_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.40092e-10
NZ_CP046428.1\|WP_004326989.1\|1912009_1912879_+\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	4.14451e-17
NZ_CP046428.1\|WP_038607317.1\|1900122_1901595_+\|flippase	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.27518e-56
NZ_CP046428.1\|WP_004327299.1\|1909934_1911974_+\|hypothetical-protein	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	0.000799149
NZ_CP046428.1\|WP_005851541.1\|1904252_1904975_+\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.23979e-61
NZ_CP046428.1\|WP_004325648.1\|1913276_1913954_+\|hypothetical-protein	gnl\|CDD\|223543	COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].	0.000951718

>NZ_CP046428.1|WP_004327294.1|1908029_1908242_+|hypothetical-protein
MSKVIHVHLIFEKKNIYFGSISAIFETLTEKQVGITKSSLLHAGLVDDIAKYTKRAMIIQSRLITCTRKG
>NZ_CP046428.1|WP_170267689.1|1905977_1907675_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MQAIILAAGMGKRLGELTKNNTKCMVEVNGIRLIDRMITQLSKFNLNRLVIVVGYEGKKLIDYIGHRYDDILKIEYINNPIYDRTNNIYSLALAKEELCKDDTILLESDLIFEDRMLELLINHRDPDLALVAKYETWMDGTMVCVDNDRNITNFVPKEAFCYENADVYYKTVNIYKFSSEFSKYQYVPFLEAYCRVMGNNEYYEQVLRILLHLHSSTLKALPITNEKWYEIDDVQDLDIASTIFSDKDIKWKEYHKRYGGYWRFPQMLDYCYLVNPFFPPKRMKDELRANFDTLLENYPSGMQINSLLAGKYFGVKQDYIVVGNGAAELIKVVMEEHSGDKVGIIYPTFDEYPNRLRKEQIVPFFPQNKNFEYTAEDLMAYFEDKNISLMMLINPDNPSGHFMPKNDVLQLAEWCAIKGIRLLVDESFVDFTYGAVDNSLLYDDILTAYPHMMVMKSISKSYGVPGLRLGILATADIDLIVRMKKEVSIWNINSFAEFYLQIYGKYEKDYIKACAKFIAERETFYTELQSIPYLRVIPSQANYFLCEVIAKYKGGETMRVKVRSV
>NZ_CP046428.1|WP_005851541.1|1904252_1904975_+|glycosyltransferase
MCKLSIIIATYNSAKTIADALKSVCAQTYQNWECIVVDGASTDNTVCIVNDFILMNSQIRCVSKKDNGIYDAFNKGWRMAKGEWIHYLGSDDKLTEDGMERLMKYAEDADLVGGGVYLCRENEVPKPQYTNGIGGCHQGFVIKRSVIEELGGFDEQYRIFADKDLLIRLEQARYKVRNYPIIIAYFYIGGISQNIRSLYSLTKERYRSYQCTGYSKYPLISSAYSYIYAILVFLKHKIIG
>NZ_CP046428.1|WP_005851538.1|1902987_1904265_+|hypothetical-protein
MDSTNISYKEKADKRIILVFIIQLIALGGAVDGFMSHSVKMNSWENCILPIALLYYLSFSNIDLKKIKALYFVLSVITISQIAVIYKYGTGNILIGRYYDVIIAFVLLRSLGIDRFFFYFENSVTILVKISLLLWGVCLLFPMLCNILVPLSLPIGFPTCSFTWGFVGLANLDSTEGLVLRNLGFAWEPGRFSSILVVTLMIHLFRNRFNLFRKNFVPLLLGIISSQATTGYMAFSVCLLGLLVNSDKKRSSKLVKYSLCGIFCIVLFCSPFMLEKMKQILDPEYFLNSNNIERLERTGEQYVPQRAEGLLMEFMNVADSPWIGYGDFKGESYISRELFPTIDIALSNGILQIFAMLGIPIGLLLYWALYKSSTLLASHFKVKGGYLFFLVICAVNVSYNFFVEPFFMVIILYCLFERKDRLCVN
>NZ_CP046428.1|WP_005851535.1|1901721_1902765_+|hypothetical-protein
MRRGYKVVCNTAAGRHRYMNLLIPYVLDNDIVDRYDIWVNTLNPVDLRFFELLAQKYSKIKLVYIEDNKFSGLKSLFEFYKYCTEEDTIYVKLDDDLIWFEPDAITRMVDFRIDNPDYFIVSPLVINNCSGTYLLQNGGKIRLKKYLSPTMTWESAWCSATFAYQLLDWFQKKVRDDSYKELHMGKKPIGMLRFSINMIVWFGATFKEFGGVCPKGENDEEYFSVIKPTQLGVANCINADVLVAHFAFTYQREDLDKTDMLLKYENLIRSKKDKVCSLYEEIKCLTLMAKENVNIEIPHYDDCRSKKNGFREFLRTRRIPGTFYDLGRIYCRLKEHKIEFDDILFSK
>NZ_CP046428.1|WP_038607317.1|1900122_1901595_+|flippase
MAKSVKANYLFNLINSASQLLFPLITFPYASRIMMADGIGQVNFFQSIISYISLFTCLGIPMYAIREVAKVRDNPEKMTRITVEILLLHAFLTLLGYMAVAVICLTVTKVQTDIPLFLLLSATIFFTAIGCEWFYQGIEDFKYVAIRGMVVKTISVILLFLLVKSKEDILWYGAYSVLGVLGGNIFNFVRLRKYLHKDMIEFRALHPFSHLKPAIHIFAFNVIVSIYLQLNNVLLGFMKDAEAVGYFTAATKILVITMSLSSSLGAVIMPRTSNLIAENKMDEFKVLIQKSYDFILALAMPLTVGLIFTSPSVILLLSGESFAPAILTSQIVALNILMVGISGVMGLQVLYPMGRINIVILCTFIGAVVNVVLNVLLIPVYGHNGTAVAYMLAEVAVTVSMFIIGRRHIPIQFFKKEHLHYVLGSVCMGICLYWVLLLELDDFMTLITMLIVGLMMYISVILILKDTMGMLFWKIIKSYLDKCQYKKKLG
>NZ_CP046428.1|WP_005851529.1|1899827_1900037_+|hypothetical-protein
MNTLKGLGSDIKLRSIKQVSASLLADDDVPDTLLDWTSEFAGQWEDDRTADEVIEDIRGARTSNREIQQ
>NZ_CP046428.1|WP_005851526.1|1899550_1899772_+|hypothetical-protein
MKSEPFNPVQLHLLKMFSYAKDERALEEIRKSLTAYFAQRVEEDMDKLWDEGLWDQDKNEAILKEHLRVPYND
>NZ_CP046428.1|WP_038608099.1|1898336_1899434_+|transcriptional-regulator
MKKLSHQFDKPKRSVASPEALEALRNNNAVRWYVLSLPDCHRGGVRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPLLFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTLPVYIPQPDGLRKGDRIRITEGRFKGVEATVVIQPGAGRKDVMVCVENWMWVPLLRVMPGEYEVIALNDEDKHVYTRLDNDCMLNGLHSALQRYHSAEGVSEEDRSLAARALKEYGNLQMDTDVMRCKLYAILLPAYTILGMEEEAAKLVGVMQTMLPLVKAEQSRALAVVTLYGCTDSSIYYHLAHEAVDPWKKEEKPKKSKQQLINRLDDYDRWLRH
>NZ_CP046428.1|WP_007832427.1|1897315_1897609_+|nucleotidyltransferase-domain-containing-protein
MLCLNECKAKLVSFKQCFGHEFGIKSIGIFGSVARQENREDSDLDIVVDIDNPTLSTMYTLKTVLTEMFHCEIDLVRFRSSLSPFLKQNIEKEAIYV
>NZ_CP046428.1|WP_004327295.1|1908641_1909061_-|helix-turn-helix-transcriptional-regulator
MSVFSKNLRYLRESRGLKLDEFEFLGIKKGTMSNYELGNTEPKLSLLCEISKFFRISIDDFLLKDIEAEKITPVVTETAPPETANNNFRELLDVLREKDSTIREMAEEIGMLKQTITQLKQDKSGRVSDASDSTVANAI
>NZ_CP046428.1|WP_004327296.1|1909196_1909388_+|hypothetical-protein
MEVKFKKGQSVRITKRNGEIIDGIVRDWDYNICTFVREYNIDYMKNGQVWTVICVPEDAIKEL
>NZ_CP046428.1|WP_004327297.1|1909507_1909708_+|hypothetical-protein
MKERIVVEYGEVNKIAELMGCTNVMVSHALAFRKNSKLARSIRKLAIERGGSKVGGNPQNTSSHEK
>NZ_CP046428.1|WP_005932418.1|1909697_1909919_+|hypothetical-protein
MKNDLMTLFSDQLHWFARLKRKQRFCVLYFCMSFGILLSIFFINPLLELLVVLNFGISVRLLKKHVPLNDLED
>NZ_CP046428.1|WP_004327299.1|1909934_1911974_+|hypothetical-protein
MEYFDNILCVTYKELLDIMPKGTLNSQLSREKLDVVSRGGGENNPALYAYSSLPEKYKKRWVERHGEPEKQMRQEMIRNIVKKDEKAENFFEDYRYDKNGEMVALPEDVKKEYTWNASVLNALMEEFKRLSSSNNKLTGFRRNLWELLLVTSEEWRPVYGHSLPGSVGRLKALINKFRPDNYGVLVSGKYGNSNTLKIEEDGGRYLVALKRSRVPVYTDMEIFEEYNRVAPERGWKPLKSPRSLREWFNSPRVEPLWYDAVYGEMKAHQRYDRKHRTILPGRRDSLWYGDGTKLNLYYRDENGNKCTTSVYEVVDAYSEVLLGYYISDNEDYIAQYHAFRMAIQTSRHKPYEIVCDNQGGHKKNAALGLFSKISRIHRPTAPYNGESKTIENIFYRFQSQVLKKRFGFTGQNITAKRDTSRPNLEFINANIDSLPTLEELKEQYAAAREQWNSMKHPATGISRIEMYNTSVNEATDAVSVSDMVEMFWYTTEKPSLFTANGIEITVQGKKYPYEVFSAPGEPDLEWRRRNTYKKFYVQYDPYDMSSVRLLYKDKGGAMRFECVASFPLMIHRAQQEQTEAEKRFIRAQQEAVINERINRQVVAKDIEYEHGVAPEQNGLRTPDLKGLGKEAQRQIDRRTRKYSQPARPSIGRDMKVISNVTWDSFEKKEVSIRKVVGKL
>NZ_CP046428.1|WP_004326989.1|1912009_1912879_+|ATP-binding-protein
MEITMKEKDAISESLRAYVAKYPSQTKAAGSLKGVSVGTVSNILNGRYENISDEMFRNVASQVGGVSATGWQIVETGAYQEITAVLSDAQRWRNVTWVTGEAGCGKSTTARVYLQEHKEVFYILCSEDMKKGDFVREIARTVGIRTEGYNIREVWGLILDDIIQMDAPLLVFDEADKLTEPVFHYFISLYNKLEEKCGVVFLSTDYIAKRISNGLRYQKPGYKEFYSRIGRKFYELEPTDVNDVFAICSANGVTDRKDIDKVIKEASTCDFDLRRVRKSIHKVKRMTGE
>NZ_CP046428.1|WP_005932412.1|1912875_1913274_+|hypothetical-protein
MTPVQIPFKRNFKDMENKFEYLKIDGREQLPAPWSDYPVLREYETVTVYRNGRDYLDALVGQQDGWWVAGVHMEVGGSGGGFNPGRKWGQFATRENALLWALGRMLCHEKLRGAARQAVLDRIDNIRQLTLF
>NZ_CP046428.1|WP_004325648.1|1913276_1913954_+|hypothetical-protein
MEEEKKDNKKAGMRRALNVRDILNKKYDVFPFEGKWKDAFDTPEVRGCWFVWGNSGNGKTSFVMQLCKELCKYDRVAFNSLEEGTSLTVQNNLRRFGMAEVSRHLAFIKEDIPTLKIRLRRHKSFNIVIIDSFQYTQMTYRDYIQLKEEFPDKLFVFISHARGKNPKGDAATSVMYDADLKIWVEGYVAFSKGRYQGATGEYTIWEKGAYDYWNVAGPKQKGGQA
>NZ_CP046428.1|WP_004326987.1|1913950_1914187_+|hypothetical-protein
MSRIKKQLEICPPAYMCKGPNRENFVSTGHKCGYCKGNGWFWGTEEGSREDVHVSCPVCGGSGELDAIITVDWKPSSK
>NZ_CP046428.1|WP_004326986.1|1914190_1915096_+|hypothetical-protein
MRKEYYNYVVKLPVLLHELFRGKVADYHFSDMTVVMNHLVKSYIRMTDGGRVSTATRRILLCMDRIPDMSFFFRRQEKSVLFFEMDPAVAGSLQRAIIAGGWGNRQRLVVRLVCAFCCGAGVTLNNLSMELASEEVFRRPEGYLIHTYVSNYQYVFLKETAAAQRMSVEGMLTAAAELLVGTDDEGSGYHIPESLGRIADRVFEVRGSTLKDFRRQCLVSIRTNTIGPDRIASFMEKHGIASAREFLRRVVLFFLEARYLIYRKEVELDEDDLPEEEETDWEETMYSQYQKRDFAISTYNY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP046428_1	1.1\|946533\|32\|NZ_CP046428\|CRT	946533-946564	32	NZ_CP046428.1	1973447-1973478	1.0
NZ_CP046428_1	1.2\|946599\|35\|NZ_CP046428\|CRT	946599-946633	35	NZ_CP046428.1	4725795-4725829	1.0
NZ_CP046428_1	1.5\|946534\|33\|NZ_CP046428\|CRISPRCasFinder	946534-946566	33	NZ_CP046428.1	1973448-1973480	1.0
NZ_CP046428_1	1.6\|946600\|36\|NZ_CP046428\|CRISPRCasFinder	946600-946635	36	NZ_CP046428.1	4725793-4725828	1.0

1. spacer 1.1|946533|32|NZ_CP046428|CRT matches to position: 1973447-1973478, mismatch: 0, identity: 1.0

caagaaacttgttttttaaatagatagctgtt	CRISPR spacer
caagaaacttgttttttaaatagatagctgtt	Protospacer
********************************

2. spacer 1.2|946599|35|NZ_CP046428|CRT matches to position: 4725795-4725829, mismatch: 0, identity: 1.0

tatttatgtccatctctacattgtcaactaatacg	CRISPR spacer
tatttatgtccatctctacattgtcaactaatacg	Protospacer
***********************************

3. spacer 1.5|946534|33|NZ_CP046428|CRISPRCasFinder matches to position: 1973448-1973480, mismatch: 0, identity: 1.0

aagaaacttgttttttaaatagatagctgttaa	CRISPR spacer
aagaaacttgttttttaaatagatagctgttaa	Protospacer
*********************************

4. spacer 1.6|946600|36|NZ_CP046428|CRISPRCasFinder matches to position: 4725793-4725828, mismatch: 0, identity: 1.0

atttatgtccatctctacattgtcaactaatacgag	CRISPR spacer
atttatgtccatctctacattgtcaactaatacgag	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046428_2	2.1\|1908388\|40\|NZ_CP046428\|CRISPRCasFinder	1908388-1908427	40	BK010646	TPA_exp: Bacteroides phage p00, complete sequence	756-795	0	1.0
NZ_CP046428_1	1.4\|946735\|31\|NZ_CP046428\|CRT	946735-946765	31	MN694639	Marine virus AFVG_250M766, complete genome	16844-16874	6	0.806
NZ_CP046428_1	1.4\|946735\|31\|NZ_CP046428\|CRT	946735-946765	31	AP013378	Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S23-C32	25103-25133	6	0.806
NZ_CP046428_1	1.1\|946533\|32\|NZ_CP046428\|CRT	946533-946564	32	MN856079	Bacteriophage sp. isolate 128, complete genome	11703-11734	8	0.75
NZ_CP046428_1	1.4\|946735\|31\|NZ_CP046428\|CRT	946735-946765	31	NZ_AP017563	Pseudanabaena sp. ABRG5-3 plasmid ABRG53c, complete sequence	42293-42323	8	0.742
NZ_CP046428_1	1.4\|946735\|31\|NZ_CP046428\|CRT	946735-946765	31	NC_041966	Acinetobacter phage WCHABP1, complete genome	34348-34378	8	0.742
NZ_CP046428_1	1.4\|946735\|31\|NZ_CP046428\|CRT	946735-946765	31	MH853788	Acinetobacter phage vB_KpnM_IME512, complete genome	14966-14996	8	0.742
NZ_CP046428_1	1.4\|946735\|31\|NZ_CP046428\|CRT	946735-946765	31	KY670595	Acinetobacter phage WCHABP12, complete genome	26517-26547	8	0.742
NZ_CP046428_1	1.4\|946735\|31\|NZ_CP046428\|CRT	946735-946765	31	MN166083	Acinetobacter phage Abp9, complete genome	333-363	8	0.742
NZ_CP046428_1	1.1\|946533\|32\|NZ_CP046428\|CRT	946533-946564	32	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	235309-235340	10	0.688
NZ_CP046428_1	1.5\|946534\|33\|NZ_CP046428\|CRISPRCasFinder	946534-946566	33	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	235307-235339	10	0.697
NZ_CP046428_1	1.1\|946533\|32\|NZ_CP046428\|CRT	946533-946564	32	MG945860	UNVERIFIED: Microviridae sp. isolate 17756-1502, complete genome	922-953	11	0.656
NZ_CP046428_1	1.1\|946533\|32\|NZ_CP046428\|CRT	946533-946564	32	AP013716	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S38-C22, * SEQUENCING IN PROGRESS *	16405-16436	11	0.656

1. spacer 2.1|1908388|40|NZ_CP046428|CRISPRCasFinder matches to BK010646 (TPA_exp: Bacteroides phage p00, complete sequence) position: , mismatch: 0, identity: 1.0

ggttattcatttaagctattacaaaaacgaaatgttttga	CRISPR spacer
ggttattcatttaagctattacaaaaacgaaatgttttga	Protospacer
****************************************

2. spacer 1.4|946735|31|NZ_CP046428|CRT matches to MN694639 (Marine virus AFVG_250M766, complete genome) position: , mismatch: 6, identity: 0.806

tttgattacttgttttacttctgcttccata	CRISPR spacer
atcttttactttttttatttctgcttccata	Protospacer
 *.  ****** *****.*************

3. spacer 1.4|946735|31|NZ_CP046428|CRT matches to AP013378 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S23-C32) position: , mismatch: 6, identity: 0.806

tttgattacttgttttacttctgcttccata	CRISPR spacer
tgtttttaatttttttacttctgcttccatt	Protospacer
* *  *** ** ******************

4. spacer 1.1|946533|32|NZ_CP046428|CRT matches to MN856079 (Bacteriophage sp. isolate 128, complete genome) position: , mismatch: 8, identity: 0.75

caagaaacttgttttttaaatagatagctgtt	CRISPR spacer
tataaaacttgtattttaaataggtagattct	Protospacer
.* .******** **********.*** * .*

5. spacer 1.4|946735|31|NZ_CP046428|CRT matches to NZ_AP017563 (Pseudanabaena sp. ABRG5-3 plasmid ABRG53c, complete sequence) position: , mismatch: 8, identity: 0.742

tttgattacttgttttacttctgcttccata	CRISPR spacer
ttcaggaacttgtcttatttctgcttccatt	Protospacer
**...  ******.***.************

6. spacer 1.4|946735|31|NZ_CP046428|CRT matches to NC_041966 (Acinetobacter phage WCHABP1, complete genome) position: , mismatch: 8, identity: 0.742

tttgattacttgttttacttctgcttccata	CRISPR spacer
ctctatgacttgctttacttctgcttcagtg	Protospacer
.*. ** *****.************** .*.

7. spacer 1.4|946735|31|NZ_CP046428|CRT matches to MH853788 (Acinetobacter phage vB_KpnM_IME512, complete genome) position: , mismatch: 8, identity: 0.742

tttgattacttgttttacttctgcttccata	CRISPR spacer
ctctatgacttgctttacttctgcttcagtg	Protospacer
.*. ** *****.************** .*.

8. spacer 1.4|946735|31|NZ_CP046428|CRT matches to KY670595 (Acinetobacter phage WCHABP12, complete genome) position: , mismatch: 8, identity: 0.742

tttgattacttgttttacttctgcttccata	CRISPR spacer
ctctatgacttgctttacttctgcttcagtg	Protospacer
.*. ** *****.************** .*.

9. spacer 1.4|946735|31|NZ_CP046428|CRT matches to MN166083 (Acinetobacter phage Abp9, complete genome) position: , mismatch: 8, identity: 0.742

tttgattacttgttttacttctgcttccata	CRISPR spacer
ctctatgacttgctttacttctgcttcagtg	Protospacer
.*. ** *****.************** .*.

10. spacer 1.1|946533|32|NZ_CP046428|CRT matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 10, identity: 0.688

caagaaacttgttttttaaatagatagctgtt	CRISPR spacer
ttagaaactggttttttaaaaagatacaaacc	Protospacer
. ******* ********** *****   ...

11. spacer 1.5|946534|33|NZ_CP046428|CRISPRCasFinder matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 10, identity: 0.697

aagaaacttgttttttaaatagatagctgttaa	CRISPR spacer
tagaaactggttttttaaaaagatacaaaccta	Protospacer
 ******* ********** *****   ... *

12. spacer 1.1|946533|32|NZ_CP046428|CRT matches to MG945860 (UNVERIFIED: Microviridae sp. isolate 17756-1502, complete genome) position: , mismatch: 11, identity: 0.656

caagaaacttgttttttaaatagatagctgtt	CRISPR spacer
tcttcaacttctttcttaaatagatagcgaaa	Protospacer
.    ***** ***.************* .

13. spacer 1.1|946533|32|NZ_CP046428|CRT matches to AP013716 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S38-C22, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.656

caagaaacttgttttttaaatagatagctgtt	CRISPR spacer
tgtgaaacttttgttttaaatagatataaacc	Protospacer
.. ******* * *************   ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2037543 : 2066059

unidentified_phage(60.0%)

integrase,transposase

attL 2042522:2042539|attR 2072869:2072886

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038607254.1\|2037543_2038779_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	9.0e-25	31.8
WP_038607251.1\|2038876_2039155_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038607248.1\|2039415_2040591_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	8.8e-14	34.6
WP_038608085.1\|2040710_2041001_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_051924169.1\|2041085_2042330_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	3.1e-33	32.7
2042522:2042539	attL	NA	NA	NA	NA
WP_004293839.1\|2043044_2044337_+	ATP-binding protein	NA	NA	NA	NA
WP_007851355.1\|2044344_2045067_+	RloB domain-containing protein	NA	NA	NA	NA
WP_007851353.1\|2045094_2046321_+	metallophosphoesterase family protein	NA	NA	NA	NA
WP_007851352.1\|2046317_2047280_+	hypothetical protein	NA	NA	NA	NA
WP_004293835.1\|2047290_2048223_+	hypothetical protein	NA	NA	NA	NA
WP_004293834.1\|2048227_2049052_+	hypothetical protein	NA	NA	NA	NA
WP_004293833.1\|2049051_2051043_+	hypothetical protein	NA	NA	NA	NA
WP_007851241.1\|2051295_2052018_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_007851243.1\|2052012_2053011_-	hypothetical protein	NA	NA	NA	NA
WP_005942649.1\|2053123_2054083_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	3.0e-20	26.3
WP_004312011.1\|2054907_2056581_-\|transposase	IS66-like element ISBf10 family transposase	A0A218MNE7	uncultured_virus	2.1e-37	28.9
WP_004312010.1\|2056656_2057022_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004319780.1\|2057025_2057382_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_170267554.1\|2057458_2058136_-	hypothetical protein	NA	NA	NA	NA
WP_007851220.1\|2058146_2059166_-	molecular chaperone DnaJ	NA	NA	NA	NA
WP_005802673.1\|2059179_2059389_-	hypothetical protein	NA	NA	NA	NA
WP_005637786.1\|2059364_2059664_-	hypothetical protein	NA	NA	NA	NA
WP_038607716.1\|2059660_2060260_-	hypothetical protein	NA	NA	NA	NA
WP_007219084.1\|2060307_2060805_-	DUF4313 domain-containing protein	NA	NA	NA	NA
WP_005637783.1\|2060855_2061107_-	hypothetical protein	NA	NA	NA	NA
WP_007851207.1\|2061176_2062064_-	hypothetical protein	NA	NA	NA	NA
WP_007851204.1\|2062067_2063210_-	hypothetical protein	NA	NA	NA	NA
WP_005634950.1\|2063194_2063491_-	hypothetical protein	NA	NA	NA	NA
WP_005640474.1\|2063903_2064311_+	hypothetical protein	NA	NA	NA	NA
WP_005640472.1\|2064823_2066059_+\|transposase	IS4 family transposase	NA	NA	NA	NA
2072869:2072886	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2898478 : 2960237

Planktothrix_phage(14.29%)

integrase,tRNA,transposase

attL 2900611:2900628|attR 2964591:2964608

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008673841.1\|2898478_2900941_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
2900611:2900628	attL	NA	NA	NA	NA
WP_005839937.1\|2900974_2901715_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_007835123.1\|2901716_2901962_+	TIGR03905 family TSCPD domain-containing protein	NA	NA	NA	NA
WP_032940937.1\|2902732_2903050_-	hypothetical protein	NA	NA	NA	NA
WP_007849427.1\|2903058_2903487_-	hypothetical protein	NA	NA	NA	NA
WP_038606859.1\|2903550_2905974_-	ABC transporter permease	NA	NA	NA	NA
WP_147542390.1\|2905970_2906657_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-35	40.3
WP_038606145.1\|2907496_2907808_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005650024.1\|2907816_2908281_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_005641938.1\|2908234_2908606_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_004295273.1\|2908830_2909052_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004295275.1\|2909864_2910401_-	methylglyoxal synthase	NA	NA	NA	NA
WP_004295276.1\|2910455_2911265_-	arginase family protein	NA	NA	NA	NA
WP_038606150.1\|2911281_2913840_-	alpha-glucan family phosphorylase	NA	NA	NA	NA
WP_005835662.1\|2913861_2916108_-	cation:proton antiporter	NA	NA	NA	NA
WP_004295279.1\|2916121_2917105_-	6-phosphofructokinase	NA	NA	NA	NA
WP_005641942.1\|2917170_2917626_-	RNA polymerase sigma factor	A0A076YQ50	Rhizobium_phage	9.0e-07	27.0
WP_004295281.1\|2917711_2918140_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_051924150.1\|2918160_2918958_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	A0A1X9IGJ2	Lactococcus_phage	5.1e-05	29.6
WP_004295283.1\|2918971_2920021_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_004295284.1\|2920049_2920532_-	ferritin	NA	NA	NA	NA
WP_005650034.1\|2920582_2921230_-	MarC family protein	NA	NA	NA	NA
WP_005641945.1\|2921332_2921785_-	ferritin	NA	NA	NA	NA
WP_004295287.1\|2921946_2922156_-	hypothetical protein	NA	NA	NA	NA
WP_038606154.1\|2924624_2925164_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_005641952.1\|2925206_2926238_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_004295292.1\|2926245_2927418_-	aldo/keto reductase	NA	NA	NA	NA
WP_005641953.1\|2927544_2928102_-	DUF296 domain-containing protein	NA	NA	NA	NA
WP_038606157.1\|2928954_2929143_+	hypothetical protein	NA	NA	NA	NA
WP_005835699.1\|2929247_2929850_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_005641955.1\|2929859_2931476_-	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_170267649.1\|2931488_2934185_-	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_038606159.1\|2935355_2936963_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_004295300.1\|2936987_2938142_-	lactonase family protein	NA	NA	NA	NA
WP_004295301.1\|2938421_2939342_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005641960.1\|2939410_2940337_-\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_004295303.1\|2940344_2941106_-	hypothetical protein	NA	NA	NA	NA
WP_004319780.1\|2941621_2941978_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_004312010.1\|2941981_2942347_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004312011.1\|2942422_2944096_+\|transposase	IS66-like element ISBf10 family transposase	A0A218MNE7	uncultured_virus	2.1e-37	28.9
WP_008652163.1\|2944495_2944993_+	N-acetylmuramoyl-L-alanine amidase	A0A0F7LBB1	uncultured_marine_virus	2.8e-25	43.0
WP_038606478.1\|2945249_2946212_-\|transposase	PD-(D/E)XK nuclease family transposase	NA	NA	NA	NA
WP_032933899.1\|2946289_2947099_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_008673472.1\|2947095_2948109_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_008673473.1\|2948124_2949252_-	hypothetical protein	NA	NA	NA	NA
WP_038607922.1\|2949248_2950382_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	1.6e-132	61.4
WP_008673475.1\|2950428_2951208_-	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_008673476.1\|2951242_2952133_-	glycosyltransferase	NA	NA	NA	NA
WP_038606474.1\|2952223_2953339_-	EpsG family protein	NA	NA	NA	NA
WP_008673478.1\|2953489_2954650_-	glycosyltransferase	NA	NA	NA	NA
WP_008673480.1\|2954695_2955406_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.7e-07	34.1
WP_008673484.1\|2956160_2957528_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_008673486.1\|2957721_2958555_-	transcriptional regulator	NA	NA	NA	NA
WP_008652199.1\|2959034_2960237_-\|integrase	site-specific integrase	NA	NA	NA	NA
2964591:2964608	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3371686 : 3422518

Bacillus_phage(25.0%)

integrase,transposase

attL 3365460:3365476|attR 3408700:3408716

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3365460:3365476	attL	NA	NA	NA	NA
WP_015532694.1\|3371686_3372898_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015532695.1\|3372894_3373842_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015532696.1\|3373825_3374881_+\|integrase	tyrosine-type recombinase/integrase	A0A0E3T6D9	Bacillus_phage	1.4e-05	24.0
WP_009017581.1\|3374992_3375514_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_008655066.1\|3375529_3376126_-	TIR domain-containing protein	NA	NA	NA	NA
WP_015532697.1\|3376134_3378102_-	TIR domain-containing protein	NA	NA	NA	NA
WP_117601594.1\|3378842_3380756_+	helicase	A0A223W0B5	Agrobacterium_phage	6.0e-68	29.6
WP_132140669.1\|3380901_3381111_-	hypothetical protein	NA	NA	NA	NA
WP_117601596.1\|3381510_3383232_+	ParB/RepB/Spo0J family partition protein	A0A1B0VME2	Pseudomonas_phage	2.9e-05	27.9
WP_004319482.1\|3384015_3384300_+	hypothetical protein	NA	NA	NA	NA
WP_004319480.1\|3384313_3384556_+	hypothetical protein	NA	NA	NA	NA
WP_117601597.1\|3384552_3384858_+	hypothetical protein	NA	NA	NA	NA
WP_117601598.1\|3384952_3385543_-	recombinase family protein	NA	NA	NA	NA
WP_117601599.1\|3385910_3387026_+	hypothetical protein	NA	NA	NA	NA
WP_004319473.1\|3387043_3387490_+	hypothetical protein	NA	NA	NA	NA
WP_117601600.1\|3387490_3387841_+	hypothetical protein	NA	NA	NA	NA
WP_004319469.1\|3387854_3388370_+	hypothetical protein	NA	NA	NA	NA
WP_170267617.1\|3388425_3389250_+	hypothetical protein	NA	NA	NA	NA
WP_004319463.1\|3389475_3390936_+	plasmid recombination protein	NA	NA	NA	NA
WP_005836222.1\|3391087_3392521_+	OmpA family protein	NA	NA	NA	NA
WP_004319459.1\|3392748_3393846_-	hypothetical protein	NA	NA	NA	NA
WP_005836221.1\|3393910_3394564_-	NYN domain-containing protein	NA	NA	NA	NA
WP_004319454.1\|3394984_3395509_+	hypothetical protein	NA	NA	NA	NA
WP_170267615.1\|3395563_3396025_+	hypothetical protein	NA	NA	NA	NA
WP_117601603.1\|3396073_3397858_-	DUF1738 domain-containing protein	M1ID37	Pelagibacter_phage	9.0e-18	47.0
WP_117601604.1\|3397873_3398488_-	hypothetical protein	NA	NA	NA	NA
WP_117601605.1\|3398534_3400049_-	glucosaminidase domain-containing protein	A0A0A7RUS8	Clostridium_phage	7.1e-16	36.8
WP_117601607.1\|3402766_3404548_-	hypothetical protein	NA	NA	NA	NA
WP_004319445.1\|3404544_3404841_-	hypothetical protein	NA	NA	NA	NA
WP_004319442.1\|3404852_3405680_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_117601608.1\|3405691_3406954_-	DNA (cytosine-5-)-methyltransferase	W8CQF4	Croceibacter_phage	7.4e-67	41.6
WP_004319438.1\|3406931_3407885_-	radical SAM protein	A0A0A7S0B8	Clostridium_phage	7.6e-48	38.4
WP_117601609.1\|3407939_3408581_-	antitoxin	NA	NA	NA	NA
WP_004319434.1\|3408623_3409310_-	hypothetical protein	NA	NA	NA	NA
3408700:3408716	attR	NA	NA	NA	NA
WP_117601610.1\|3409328_3410021_-	hypothetical protein	NA	NA	NA	NA
WP_005836202.1\|3410001_3410487_-	PH domain-containing protein	NA	NA	NA	NA
WP_117601611.1\|3410501_3412187_-	toprim domain-containing protein	NA	NA	NA	NA
WP_117601612.1\|3412224_3413826_-	hypothetical protein	NA	NA	NA	NA
WP_008667075.1\|3413853_3414090_-	hypothetical protein	NA	NA	NA	NA
WP_004319423.1\|3414095_3414851_-	DUF4099 domain-containing protein	NA	NA	NA	NA
WP_117601613.1\|3415127_3415766_+	M23 family metallopeptidase	S5M424	Bacillus_phage	1.5e-12	39.2
WP_117889373.1\|3416075_3417083_+	Abi family protein	NA	NA	NA	NA
WP_117601705.1\|3417539_3418157_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005836193.1\|3418257_3418866_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_117601704.1\|3418980_3420123_+	beta-ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_153837237.1\|3420362_3420506_-	hypothetical protein	NA	NA	NA	NA
WP_005836189.1\|3420565_3420847_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_005836188.1\|3421146_3421308_+	hypothetical protein	NA	NA	NA	NA
WP_005836186.1\|3421497_3422124_+\|transposase	transposase	NA	NA	NA	NA
WP_080597322.1\|3422160_3422403_+\|transposase	transposase	NA	NA	NA	NA
WP_157447735.1\|3422356_3422518_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_4

3431361 : 3478380

unidentified_phage(25.0%)

integrase,tRNA

attL 3427615:3427629|attR 3481400:3481414

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3427615:3427629	attL	NA	NA	NA	NA
WP_005837664.1\|3431361_3433974_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	9.1e-152	39.8
WP_005837665.1\|3434111_3434873_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_005837668.1\|3435163_3435394_-	hypothetical protein	NA	NA	NA	NA
WP_170267611.1\|3435422_3435695_-	hypothetical protein	NA	NA	NA	NA
WP_005836165.1\|3439672_3441346_+	hypothetical protein	NA	NA	NA	NA
WP_005836163.1\|3441356_3441761_+	hypothetical protein	NA	NA	NA	NA
WP_005836161.1\|3441974_3442511_+	hypothetical protein	NA	NA	NA	NA
WP_005836159.1\|3442516_3443383_+	WG repeat-containing protein	NA	NA	NA	NA
WP_117601535.1\|3443568_3445752_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_117601542.1\|3445770_3446430_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_117601534.1\|3446588_3447131_-	hypothetical protein	NA	NA	NA	NA
WP_005836155.1\|3447120_3447966_-	conjugative transposon protein TraN	NA	NA	NA	NA
WP_117601533.1\|3448020_3449271_-	conjugative transposon protein TraM	NA	NA	NA	NA
WP_117601532.1\|3449248_3449590_-	hypothetical protein	NA	NA	NA	NA
WP_117601531.1\|3449591_3450206_-	conjugative transposon protein TraK	NA	NA	NA	NA
WP_170267845.1\|3450285_3450630_-	hypothetical protein	NA	NA	NA	NA
WP_057256683.1\|3450828_3451995_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	4.1e-11	27.8
WP_170267610.1\|3452019_3453174_+\|integrase	site-specific integrase	Q7Y5X7	Haemophilus_phage	4.6e-07	29.8
WP_005680006.1\|3453340_3453547_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_170267608.1\|3453613_3456010_+	DEAD/DEAH box helicase family protein	A0A0S0N4Y4	Pseudomonas_phage	2.3e-08	25.1
WP_060451265.1\|3456024_3457536_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_170267607.1\|3457573_3458599_+	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	1.2e-38	30.4
WP_170267605.1\|3458639_3459146_+	hypothetical protein	NA	NA	NA	NA
WP_170267603.1\|3459161_3460715_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_170267602.1\|3460711_3461302_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_170267843.1\|3461280_3461850_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_170267600.1\|3461829_3463146_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_170267597.1\|3463206_3464013_+\|integrase	tyrosine-type recombinase/integrase	A0A0H4TI16	Erysipelothrix_phage	1.3e-21	29.8
WP_170267596.1\|3464061_3465093_+	hypothetical protein	NA	NA	NA	NA
WP_170267594.1\|3465082_3466519_-	plasmid recombination protein	NA	NA	NA	NA
WP_170267592.1\|3466793_3467402_-	hypothetical protein	NA	NA	NA	NA
WP_118201256.1\|3467446_3467755_-	hypothetical protein	NA	NA	NA	NA
WP_032837977.1\|3467757_3468048_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004292635.1\|3468893_3470036_+\|integrase	site-specific integrase	A0A1Y0T0H2	Sinorhizobium_phage	3.9e-06	24.7
WP_004292636.1\|3470050_3471196_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.1e-13	30.3
WP_004292637.1\|3471505_3472936_+	ATP-binding protein	NA	NA	NA	NA
WP_004312206.1\|3472941_3473562_+	hypothetical protein	NA	NA	NA	NA
WP_004312207.1\|3473558_3473972_+	hypothetical protein	NA	NA	NA	NA
WP_004292639.1\|3474205_3474448_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004292640.1\|3474478_3474952_+	hypothetical protein	NA	NA	NA	NA
WP_005942618.1\|3475063_3475579_+	hypothetical protein	NA	NA	NA	NA
WP_170267590.1\|3475720_3476158_+	metalloproteinase	NA	NA	NA	NA
WP_004292643.1\|3476154_3477387_+	hypothetical protein	NA	NA	NA	NA
WP_004292644.1\|3477393_3477930_+	hypothetical protein	NA	NA	NA	NA
WP_004312210.1\|3477957_3478380_+\|integrase	integrase	NA	NA	NA	NA
3481400:3481414	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4858965 : 4922833

Moumouvirus(16.67%)

integrase,tRNA,transposase

attL 4869067:4869083|attR 4910981:4910997

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007831288.1\|4858965_4860369_-\|tRNA	asparagine--tRNA ligase	H2EDM5	Moumouvirus	3.7e-91	39.3
WP_038605531.1\|4860391_4861849_-	pseudouridine synthase	NA	NA	NA	NA
WP_007831283.1\|4861924_4863271_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-144	58.1
WP_007831282.1\|4863364_4864714_-	MATE family efflux transporter	NA	NA	NA	NA
WP_007831281.1\|4864876_4866370_+	M28 family peptidase	NA	NA	NA	NA
WP_007842164.1\|4866461_4866827_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_007842163.1\|4866823_4867714_-	hypothetical protein	NA	NA	NA	NA
WP_134770932.1\|4867726_4868569_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	7.5e-15	29.7
WP_007831271.1\|4868754_4870170_-	tetratricopeptide repeat protein	NA	NA	NA	NA
4869067:4869083	attL	NA	NA	NA	NA
WP_007831269.1\|4870186_4871134_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_007831267.1\|4871143_4871956_-	energy transducer TonB	NA	NA	NA	NA
WP_007831266.1\|4871985_4872636_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_007831265.1\|4872648_4873254_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_007831264.1\|4873282_4874098_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_007831263.1\|4874206_4874611_-	hypothetical protein	NA	NA	NA	NA
WP_038605525.1\|4881624_4884465_-	fucokinase	NA	NA	NA	NA
WP_038605522.1\|4885278_4887060_+	signal peptide peptidase SppA	NA	NA	NA	NA
WP_007851185.1\|4887067_4888168_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_007834966.1\|4888130_4888940_+	purine-nucleoside phosphorylase	Q5YBA4	Grouper_iridovirus	9.9e-57	42.3
WP_007834965.1\|4888944_4889985_+	thiamine-phosphate kinase	NA	NA	NA	NA
WP_005864602.1\|4890640_4891876_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.4e-33	36.3
WP_005640453.1\|4892054_4893344_-\|transposase	IS1380-like element ISBvu1 family transposase	NA	NA	NA	NA
WP_005640456.1\|4893450_4893618_-	hypothetical protein	NA	NA	NA	NA
WP_005640468.1\|4894065_4895433_-	hypothetical protein	NA	NA	NA	NA
WP_005640470.1\|4895700_4896906_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_005640472.1\|4896979_4898215_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_005640474.1\|4898727_4899135_-	hypothetical protein	NA	NA	NA	NA
WP_005634950.1\|4899547_4899844_+	hypothetical protein	NA	NA	NA	NA
WP_007851204.1\|4899828_4900971_+	hypothetical protein	NA	NA	NA	NA
WP_007851207.1\|4900974_4901862_+	hypothetical protein	NA	NA	NA	NA
WP_005637783.1\|4901931_4902183_+	hypothetical protein	NA	NA	NA	NA
WP_007219084.1\|4902233_4902731_+	DUF4313 domain-containing protein	NA	NA	NA	NA
WP_038607716.1\|4902778_4903378_+	hypothetical protein	NA	NA	NA	NA
WP_005637786.1\|4903374_4903674_+	hypothetical protein	NA	NA	NA	NA
WP_005802673.1\|4903649_4903859_+	hypothetical protein	NA	NA	NA	NA
WP_007851220.1\|4903872_4904892_+	molecular chaperone DnaJ	NA	NA	NA	NA
WP_170267554.1\|4904902_4905580_+	hypothetical protein	NA	NA	NA	NA
WP_004319780.1\|4905656_4906013_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_004312010.1\|4906016_4906382_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004312011.1\|4906457_4908131_+\|transposase	IS66-like element ISBf10 family transposase	A0A218MNE7	uncultured_virus	2.1e-37	28.9
WP_005636958.1\|4908638_4909118_-	hypothetical protein	NA	NA	NA	NA
WP_005636957.1\|4909114_4909576_-	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_005636956.1\|4909597_4910185_-	conjugal transfer protein TraO	NA	NA	NA	NA
WP_005636955.1\|4910181_4911096_-	conjugative transposon protein TraN	NA	NA	NA	NA
4910981:4910997	attR	NA	NA	NA	NA
WP_005636954.1\|4911145_4912453_-	conjugative transposon protein TraM	NA	NA	NA	NA
WP_005656892.1\|4912403_4912703_-	DUF3989 domain-containing protein	NA	NA	NA	NA
WP_005636947.1\|4912699_4913323_-	conjugative transposon protein TraK	NA	NA	NA	NA
WP_005636943.1\|4913446_4914460_-	conjugative transposon protein TraJ	NA	NA	NA	NA
WP_005636941.1\|4914462_4915092_-	DUF4141 domain-containing protein	NA	NA	NA	NA
WP_005636939.1\|4915088_4915445_-	DUF3876 domain-containing protein	NA	NA	NA	NA
WP_005636936.1\|4915441_4917976_-	TraG family conjugative transposon ATPase	NA	NA	NA	NA
WP_005636934.1\|4917972_4918299_-	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_080707039.1\|4918304_4918691_-	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_005636926.1\|4919247_4920258_+	hypothetical protein	NA	NA	NA	NA
WP_005636924.1\|4920290_4921430_+	hypothetical protein	NA	NA	NA	NA
WP_005636919.1\|4921669_4922833_-\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

4997147 : 5042140

Prochlorococcus_phage(14.29%)

tail,capsid,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038604979.1\|4997147_4998083_+\|transposase	transposase	NA	NA	NA	NA
WP_007841291.1\|4998496_4999489_-	aldo/keto reductase	NA	NA	NA	NA
WP_007839091.1\|4999512_5000853_-	argininosuccinate lyase	NA	NA	NA	NA
WP_007839093.1\|5000868_5001273_-	hypothetical protein	NA	NA	NA	NA
WP_007839094.1\|5001370_5002009_-	orotate phosphoribosyltransferase	Q58MW1	Prochlorococcus_phage	8.2e-06	29.3
WP_008654381.1\|5002108_5002804_-	ComF family protein	NA	NA	NA	NA
WP_007839108.1\|5002784_5003270_-	RecX family transcriptional regulator	NA	NA	NA	NA
WP_008654379.1\|5003271_5004108_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_007839112.1\|5004152_5005220_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	7.2e-39	34.5
WP_007839114.1\|5005332_5006730_+	hypothetical protein	NA	NA	NA	NA
WP_007841298.1\|5006763_5007495_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	7.4e-27	48.1
WP_007839118.1\|5007506_5010146_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_007839119.1\|5010166_5010682_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_007839120.1\|5010739_5011243_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_007839121.1\|5011345_5012191_+	glutamate racemase	NA	NA	NA	NA
WP_008654376.1\|5012247_5013120_+	pyridoxamine kinase	NA	NA	NA	NA
WP_007841308.1\|5013504_5014743_-	ABC transporter permease	NA	NA	NA	NA
WP_005844486.1\|5014752_5015088_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_007839133.1\|5015161_5015800_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005850571.1\|5015815_5017279_-	pyruvate kinase	NA	NA	NA	NA
WP_007841313.1\|5017311_5017734_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_007841315.1\|5017800_5018727_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	3.7e-31	28.7
WP_007839136.1\|5018885_5020562_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_007839137.1\|5020714_5021782_+	DUF4369 domain-containing protein	NA	NA	NA	NA
WP_038605407.1\|5022519_5024391_+	recombinase family protein	NA	NA	NA	NA
WP_038605404.1\|5024430_5024838_+	hypothetical protein	NA	NA	NA	NA
WP_134770179.1\|5025231_5025708_+	hypothetical protein	NA	NA	NA	NA
WP_038605398.1\|5025757_5026411_-	recombinase family protein	A0A0F7L6S1	uncultured_marine_virus	5.1e-27	40.4
WP_134770178.1\|5026740_5027532_+	hypothetical protein	NA	NA	NA	NA
WP_170267553.1\|5027567_5027738_-	hypothetical protein	NA	NA	NA	NA
WP_134770177.1\|5028474_5029197_-	hypothetical protein	NA	NA	NA	NA
WP_117596114.1\|5029255_5029561_-	hypothetical protein	NA	NA	NA	NA
WP_117596113.1\|5029709_5029916_-	hypothetical protein	NA	NA	NA	NA
WP_134770176.1\|5029912_5030200_-	hypothetical protein	NA	NA	NA	NA
WP_134770175.1\|5030232_5031342_-	hypothetical protein	NA	NA	NA	NA
WP_134771010.1\|5031343_5034469_-\|tail	tail fiber domain-containing protein	A0A172Q098	Acinetobacter_phage	1.2e-09	27.7
WP_170267552.1\|5034470_5036030_-	hypothetical protein	NA	NA	NA	NA
WP_134770173.1\|5036539_5038318_-	hypothetical protein	NA	NA	NA	NA
WP_117856097.1\|5038320_5038560_-	hypothetical protein	NA	NA	NA	NA
WP_022192721.1\|5038628_5038922_-	hypothetical protein	NA	NA	NA	NA
WP_134770172.1\|5038986_5039442_-\|tail	phage tail protein	NA	NA	NA	NA
WP_134770171.1\|5039422_5039824_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_134770170.1\|5039820_5040321_-	hypothetical protein	NA	NA	NA	NA
WP_134770169.1\|5040313_5040631_-\|head	phage head closure protein	NA	NA	NA	NA
WP_117678206.1\|5040627_5040930_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_134770168.1\|5040958_5042140_-\|capsid	phage major capsid protein	K7XS73	uncultured_Mediterranean_phage	4.1e-35	32.5

Anti-CRISPR protein detection

Acr_ID: NZ_CP046428.1|WP_004291533.1|5354881_5355298_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP046428.1|WP_004291533.1|5354881_5355298_+|hypothetical-protein

5354881_5355298_+

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5571428571428572	0.9855072463768116	0.9929078014184397

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046428

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information