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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047299 Vibrio cholerae O1 biovar El Tor strain P27459 chromosome 1, complete sequence 1 crisprs cas3,RT,DEDDh,DinG,csx1,WYL,csa3 0 1 4 0
NZ_CP047300 Vibrio cholerae O1 biovar El Tor strain P27459 chromosome 2, complete sequence 0 crisprs PD-DExK,csa3,cas3 0 0 0 0

Results visualization

1. NZ_CP047299
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047299_1 2598292-2598535 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047299_1 1.1|2598341|37|NZ_CP047299|PILER-CR 2598341-2598377 37 NC_049942 Escherichia phage JLK-2012, complete sequence 23524-23560 4 0.892
NZ_CP047299_1 1.1|2598341|37|NZ_CP047299|PILER-CR 2598341-2598377 37 NC_021742 Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence 35428-35464 4 0.892

1. spacer 1.1|2598341|37|NZ_CP047299|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*********************.***********. *

2. spacer 1.1|2598341|37|NZ_CP047299|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
******.***************.*********** *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 647253 : 653870 7 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_2 1497639 : 1532974 28 Satellite_phage(43.48%) coat NA
DBSCAN-SWA_3 2271345 : 2278538 9 Anguillid_herpesvirus(16.67%) NA NA
DBSCAN-SWA_4 2510167 : 2517391 6 uncultured_Mediterranean_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage