CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047302	Vibrio cholerae O1 biovar El Tor strain DRC-193A chromosome 2, complete sequence	0 crisprs	csa3,cas3	0	0	0	0
NZ_CP047301	Vibrio cholerae O1 biovar El Tor strain DRC-193A chromosome 1, complete sequence	1 crisprs	cas3,RT,DEDDh,DinG,csx1,WYL,csa3	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047301_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047301_1

2694113-2694356

Orphan

Consensus_repeat	Method
AAAATGTGCCTCCTTAGCTCAGTCGGTAGAGCAACGGACTGATAATCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP047301_1

>merge|NZ_CP047301|1|2694113-2694356|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGATTCCGGCAGCCGGCACCACTTAAAATTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCACTATTAAAAGTTGTGCCATAGACACAATAAAAATTGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCG

>NZ_CP047301|1|1|2694113-2694356|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGG	TCGCCAGTTCGATTCCGGCAGCCGGCACCACTTAAAA
TTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTG	TCGGTGGTTCGATTCCGCCTCGAGGCACCACTATTAAAAGTTGTGCCATAGACACAATAAAAAT
TGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047301.1\|WP_001233674.1\|2686822_2687254_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_CP047301.1\|WP_000124738.1\|2692380_2692653_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP047301.1\|WP_000383338.1\|2703912_2704293_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP047301.1\|WP_000957351.1\|2687919_2689095_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP047301.1\|WP_000954087.1\|2705771_2706245_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|182143
NZ_CP047301.1\|WP_000035032.1\|2704303_2705113_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
NZ_CP047301.1\|WP_000095773.1\|2702019_2703012_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP047301.1\|WP_001890075.1\|2691305_2692367_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP047301.1\|WP_000769920.1\|2694645_2696271_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP047301.1\|WP_000718491.1\|2686486_2686777_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP047301.1\|WP_000780524.1\|2700734_2702030_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP047301.1\|WP_001230176.1\|2692754_2693882_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_CP047301.1\|WP_001087263.1\|2685929_2686487_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NZ_CP047301.1\|WP_000725019.1\|2687323_2687926_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP047301.1\|WP_001243262.1\|2703025_2703841_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP047301.1\|WP_001277601.1\|2698330_2700682_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP047301.1\|WP_000546924.1\|2697317_2698172_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP047301.1\|WP_000005584.1\|2690346_2691066_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP047301.1\|WP_000973535.1\|2705261_2705759_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP047301.1\|WP_000805043.1\|2689315_2690236_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880

Protein	Function_ID	Function_description	E-value
NZ_CP047301.1\|WP_001233674.1\|2686822_2687254_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	6.80534e-67
NZ_CP047301.1\|WP_000124738.1\|2692380_2692653_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	5.47988e-59
NZ_CP047301.1\|WP_000383338.1\|2703912_2704293_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	1.16069e-74
NZ_CP047301.1\|WP_000957351.1\|2687919_2689095_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP047301.1\|WP_000954087.1\|2705771_2706245_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	7.45224e-67
NZ_CP047301.1\|WP_000035032.1\|2704303_2705113_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	1.41419e-169
NZ_CP047301.1\|WP_000095773.1\|2702019_2703012_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP047301.1\|WP_001890075.1\|2691305_2692367_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP047301.1\|WP_000769920.1\|2694645_2696271_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.35326e-58
NZ_CP047301.1\|WP_000718491.1\|2686486_2686777_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	2.12816e-59
NZ_CP047301.1\|WP_000780524.1\|2700734_2702030_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	9.94454e-157
NZ_CP047301.1\|WP_001230176.1\|2692754_2693882_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	9.42926e-157
NZ_CP047301.1\|WP_001087263.1\|2685929_2686487_+\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	1.96316e-12
NZ_CP047301.1\|WP_000725019.1\|2687323_2687926_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	4.099e-127
NZ_CP047301.1\|WP_001243262.1\|2703025_2703841_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.27746e-146
NZ_CP047301.1\|WP_001277601.1\|2698330_2700682_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP047301.1\|WP_000546924.1\|2697317_2698172_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.60415e-153
NZ_CP047301.1\|WP_000005584.1\|2690346_2691066_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	6.01203e-111
NZ_CP047301.1\|WP_000973535.1\|2705261_2705759_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	1.40644e-92
NZ_CP047301.1\|WP_000805043.1\|2689315_2690236_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0

>NZ_CP047301.1|WP_001230176.1|2692754_2693882_+|membrane-bound-lytic-murein-transglycosylase-MltC
MRKLVLCITALLLSGCSREFIEKIYDVDYEPTNRFAKNLAELPGQFQKDTAALDALINSFSGNIEKRWGRRELKIAGKNNYVKYIDNYLSRSEVNFTEGRIIVETVSPIDPKAHLRNAIITTLLTPDDPAHVDLFSSKDIELKGQPFLYQQVLDQDGQPIQWSWRANRYADYLIANHLKVKQVDFKKAYYVEIPMVKDQIDIRGYKYASIVRKASRKYDIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGEPSPEYLFNPENNIDTGTAYFYILKNRYLKEVRHPTSLEYSMISAYNGGTGGVLSTFSSDRQRAMRDLNALQPNQVYWALTKKHPNAEARRYLEKVTKFKKEFNAG
>NZ_CP047301.1|WP_000124738.1|2692380_2692653_+|oxidative-damage-protection-protein
MARTVFCTRLQKEADGLDFQLYPGELGKRIFDNICKEAWAQWQTKQTMLINEKKLNMMDPEHRKLLEQEMVNFLFEGKEVHIEGYTPPAK
>NZ_CP047301.1|WP_001890075.1|2691305_2692367_+|A/G-specific-adenine-glycosylase
MTPFAQAILTWYDAYGRKNLPWQQNKNAYRVWLSEIMLQQTQVATVIPYFERFLERFPTVHALAAAPQDEVLHFWTGLGYYARARNLHKAAQMVVSEYGGEFPTDLEQMNALPGVGRSTAAAVLSSVYKKPHAILDGNVKRTLARCFAVEGWPGQKSVENQLWHYAEMHTPKVDVDKYNQAMMDMGAMICTRSKPKCSLCPVESFCLAKQQGNPQEYPGKKPKTDKPVKATWFVMLYHDNAVWLEQRPQSGIWGGLYCFPQSEIANIQTTIDQRAIGDSTITSQKTLIAFRHTFSHYHLDITPILLQLSRKPDIVMEGSKGLWYNLSHPDEIGLAAPVKQLLHTLPFDIDSHI
>NZ_CP047301.1|WP_000005584.1|2690346_2691066_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVITQEYTEDGKVLRRIRSFVRREGRLTKGQEAAMKECWPTMGIDYQPELLDWQQVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASAREAGVTNLRVMCHDAVEVFAHMIPDNSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLMIGSGVFHMATDWENYAEHMVEVMNQAPGFANLATDGDYVPRPDERPLTKFEQRGHRLGHGVWDIKYQRTA
>NZ_CP047301.1|WP_000805043.1|2689315_2690236_-|glutaminase-B
MKPTADILASIIEEVRPLTSKGIVADYIPALAKVPSDKLGIAVFTNQGEVITAGDAQEGFSIQSISKVLSLTLAMGLYQPDELWSRVGKEPSGQAFNSLIQLEMEQGIPRNPFINAGAIVVCDMLQSRLSAPRQRLLEFVRQLSGEPQIAYDKVVAASEMMHSDRNAAIAYLMRSFGNFHNEVIPVLHNYFHACALKMSCVELAKTFSYLANKGVSVVTGETVITPTQSKQTNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPALDQSGNSLAGTRALELLAQRIGRSIF
>NZ_CP047301.1|WP_000957351.1|2687919_2689095_+|radical-SAM-family-heme-chaperone-HemW
MLTPPSLSLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDALLQDLDRDIERYQLKGDPRLLHSIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYRTAGVTRISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQALADLDQAIALNPPHLSWYQLTIEPNTLFYSKPPKLPDEDALWDIFELGHQKLSDAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLAALNNLAKAYLDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWALSEGYLSEDDQHWQITEKGKLFLNDLLEAFMADEEE
>NZ_CP047301.1|WP_000725019.1|2687323_2687926_+|XTP/dITP-diphosphatase
MKKIVLATGNQGKVREMADLLSDFGFDVVAQSEFNVPEAAETGTTFIENAIIKARHAAQITGLPTIADDSGLEVDYLNGAPGIYSARYAGEHASDGDNLNKLLMAMQDVPDDQRSARFHCVLVLMRHADDPTPIVCHGKWEGKILTAPHGSNGFGYDPIFWVPEENCASAELEPVRKKQLSHRGKALQKLFKAIEEQRTC
>NZ_CP047301.1|WP_001233674.1|2686822_2687254_+|DUF4426-domain-containing-protein
MRKWMMSLLLTLLALPASAEQQKTIKDIEVHYSAFNSTFLTPKVASSYQLTRNGYTAILNISVLDRASLGKPATEAKLTGHAKNLIGNLRELSFKQVKEGNAIYYLAEVPISNEEMLTFDIDVDAGLKGAGKLTFSQKFYTEQ
>NZ_CP047301.1|WP_000718491.1|2686486_2686777_+|YggU-family-protein
MAAAWREGDDLLLRLYIQPKASRDSIVGLHGEELKVAITAPPIDGKANAHLSKYLAKLCKVAKGSVVVEKGELGRHKQVRILQPSQIPAEIAALIE
>NZ_CP047301.1|WP_001087263.1|2685929_2686487_+|YggT-family-protein
MNSLSFLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLATIVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAILSWVSQGRSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSVLVLFIVLQFANFLMGDVIGPIWYQL
>NZ_CP047301.1|WP_000769920.1|2694645_2696271_+|methyl-accepting-chemotaxis-protein
MKLKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEVTR
>NZ_CP047301.1|WP_000546924.1|2697317_2698172_-|co-chaperone-DjlA
MHIFGKILGAFFGFLFGGPFGAIFGIFLGHQFDKARRLNQAGFQSGTFGAGPSQAERQEEFFKSAFSVMGHVAKAKGQVTKEEIQLATIMMDRMNLTLEQKRAAQDAFRDGKESDFPLEQVLERVKIATGGRFDLLQFFLELQVSSAFADGDVHPSERQVLHRIARGLGFSSEQLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPSSRHQLADAYEVLGVSESASAQEVKRAYRKLMNEHHPDKLMAKGLPPEMMNVAKEKSQQIQHAYELIRKEKGIK
>NZ_CP047301.1|WP_001277601.1|2698330_2700682_+|LPS-assembly-protein-LptD
MSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN
>NZ_CP047301.1|WP_000780524.1|2700734_2702030_+|peptidylprolyl-isomerase-SurA
MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQPLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASVAQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSTAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEVLKDEKDEQ
>NZ_CP047301.1|WP_000095773.1|2702019_2703012_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MSSKRIIVTAGEPAGIGPDLVLALSAQDWPHQLVVCADKALLAQRATQLGIQVKLLDYQRDNPVQAQQAGTLLVEHIPLAEPVVAGQLNPANGHYVLKTLERAAKGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSKTPLVVMMLATEGLRTALVTTHLPLAEVPQAITCERLEQIVHILHKDLVEKFAIAEPKIYVCGLNPHAGEDGVLGMDEIETITPTLQRLREQYGMQLVGPLPADTIFSEKYLQQADAVLGMYHDQVLPVLKYKGFGRSVNITLGLPFIRTSVDHGTALDLAGTGQADAGSFWTALAYAIELVDKKAQ
>NZ_CP047301.1|WP_001243262.1|2703025_2703841_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWLDATHKTHA
>NZ_CP047301.1|WP_000383338.1|2703912_2704293_+|Co2+/Mg2+-efflux-protein-ApaG
MDVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLMIDEQGESFTVEIEPFRLAVPHVLN
>NZ_CP047301.1|WP_000035032.1|2704303_2705113_+|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MANYIVGDIQGCFDELQQLLKQAEFNSQLDTLWFAGDLVARGPKSLETLRFVYQLGDAARVVLGNHDLHLLSVALGHHSAKRRDQTQAVLDAPDAAPLLDWLRQQPLLAEHQEFVLCHAGISPQWDLATARQAAQEVESVLRSPEWSTLIEQMYSDQPDAWHPTLQGIDRLRYIVNAFTRMRFCFPDGRLDMQCKLPPKEVTDGSLLPWFQLPQRIALEKTVIFGHWAALEGYVSETVIGLDTGCVWGGTLTMLRWEDKHYFSQAALPA
>NZ_CP047301.1|WP_000973535.1|2705261_2705759_-|type-3-dihydrofolate-reductase
MMISMIAAMADQRIIGKDNQMPWHLPADFAWFKRCTLGKPVVMGRKTYQSIGRPLPGRHNIVISRDASLQIEGVDVVTSIEAALAKAGEVDEVMIIGGGSLYAACLPMAHKLYITEIHAKLDGDTQFPEWGSDWLERSREHYPADEKNAYGMDFVIFERQYPLPT
>NZ_CP047301.1|WP_000954087.1|2705771_2706245_-|threonine/serine-exporter-family-protein
MLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCALGGALGHGSRYLMMHFGVPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVPGVFAFKAMIALVEINHVGFSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPII

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047301_1	1.1\|2694162\|37\|NZ_CP047301\|PILER-CR	2694162-2694198	37	NC_049942	Escherichia phage JLK-2012, complete sequence	23524-23560	4	0.892
NZ_CP047301_1	1.1\|2694162\|37\|NZ_CP047301\|PILER-CR	2694162-2694198	37	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35428-35464	4	0.892

1. spacer 1.1|2694162|37|NZ_CP047301|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*********************.***********. *

2. spacer 1.1|2694162|37|NZ_CP047301|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
******.***************.*********** *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

648851 : 655468

Staphylococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000210573.1\|648851_649985_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	40.4
WP_000366574.1\|649996_651247_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.0e-100	49.5
WP_000543544.1\|651346_651796_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_001131994.1\|651821_652925_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.3e-43	33.1
WP_000493874.1\|652929_653583_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-31	38.2
WP_001122865.1\|653623_654733_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_000864130.1\|654997_655468_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7

DBSCAN-SWA_2

1132105 : 1183471

Vibrio_phage(50.0%)

transposase,integrase,tail

attL 1176583:1176597|attR 1190563:1190577

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000992438.1\|1132105_1133863_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q5ZR04	Pseudomonas_phage	1.6e-91	34.5
WP_001064711.1\|1134946_1135408_+	hypothetical protein	NA	NA	NA	NA
WP_001059182.1\|1135404_1135638_+	hypothetical protein	NA	NA	NA	NA
WP_000879671.1\|1136217_1136592_+	middle operon regulator	NA	NA	NA	NA
WP_000035502.1\|1136578_1136899_+	transcriptional regulator	NA	NA	NA	NA
WP_000059473.1\|1136917_1137496_+	hypothetical protein	NA	NA	NA	NA
WP_000401420.1\|1137556_1137928_+	hypothetical protein	NA	NA	NA	NA
WP_000290080.1\|1137976_1138336_+\|tail	phage tail assembly protein	A0A2I7S9E0	Vibrio_phage	3.7e-40	67.8
WP_001909624.1\|1138551_1139511_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	2.3e-116	73.1
WP_086010879.1\|1139553_1140730_+\|transposase	IS3-like element ISVch4 family transposase	Q716C2	Shigella_phage	1.5e-117	65.1
WP_000213836.1\|1140727_1141423_+	hypothetical protein	A0A2I7S9D9	Vibrio_phage	1.2e-18	35.4
WP_000148675.1\|1141652_1142129_-	DNA repair protein RadC	NA	NA	NA	NA
WP_001211490.1\|1142272_1142449_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	2.8e-09	51.9
WP_001211290.1\|1142595_1144941_-	sialidase	NA	NA	NA	NA
WP_001185226.1\|1145364_1146501_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_001259414.1\|1146504_1147368_-	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_001889711.1\|1147355_1148078_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_000849284.1\|1148292_1149258_+	sialic acid TRAP transporter solute-binding subunit SiaP	NA	NA	NA	NA
WP_001889698.1\|1149308_1149830_+	sialic acid TRAP transporter small permease SiaQ	NA	NA	NA	NA
WP_000233105.1\|1149837_1151121_+	sialic acid TRAP transporter large permease SiaM	NA	NA	NA	NA
WP_000736956.1\|1151158_1152055_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_001052933.1\|1152183_1153020_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001056548.1\|1153201_1154356_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_001008007.1\|1154370_1155441_+	YjhT family mutarotase	NA	NA	NA	NA
WP_001277248.1\|1155505_1156366_-	YafY family transcriptional regulator	NA	NA	NA	NA
WP_000251914.1\|1156438_1160056_+	hypothetical protein	NA	NA	NA	NA
WP_000258536.1\|1160037_1162101_+	hypothetical protein	NA	NA	NA	NA
WP_000350101.1\|1162241_1164623_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	5.6e-23	29.0
WP_001122813.1\|1165829_1167041_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.2e-51	51.4
WP_000301909.1\|1167281_1168694_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000502257.1\|1168686_1170678_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000253901.1\|1170714_1173774_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.5e-22	24.0
WP_001996894.1\|1173818_1175939_+	anti-phage defense ZorAB system ZorA	NA	NA	NA	NA
WP_001252511.1\|1175931_1176666_+	flagellar motor protein MotB	NA	NA	NA	NA
1176583:1176597	attL	NA	NA	NA	NA
WP_000055826.1\|1176662_1178114_+	transcriptional regulator	NA	NA	NA	NA
WP_000424158.1\|1178104_1181554_+	restriction endonuclease	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	7.0e-27	25.9
WP_001881542.1\|1181684_1182140_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	7.8e-43	58.4
WP_000002768.1\|1182235_1183471_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.2e-146	62.2
1190563:1190577	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1500541 : 1533029

Vibrio_phage(52.63%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001161489.1\|1500541_1500709_+	hypothetical protein	E3U9J0	Vibrio_phage	2.3e-13	100.0
WP_000005769.1\|1501907_1502459_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001881266.1\|1502635_1504204_+	replication protein	A7BJY2	Enterobacteria_phage	2.7e-58	32.3
WP_000512956.1\|1504223_1504493_+	hypothetical protein	NA	NA	NA	NA
WP_001052672.1\|1504622_1505315_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001161489.1\|1505392_1505560_+	hypothetical protein	E3U9J0	Vibrio_phage	2.3e-13	100.0
WP_000170634.1\|1505552_1506137_+	DNA-binding protein	E3U9I9	Vibrio_phage	6.4e-114	100.0
WP_000693566.1\|1506626_1506965_-	helix-turn-helix transcriptional regulator	U5TNA1	Satellite_phage	7.3e-54	100.0
WP_000743997.1\|1507090_1508170_+	replication initiation factor domain-containing protein	U5TQR3	Satellite_phage	2.2e-213	100.0
WP_001911551.1\|1508171_1508522_+	hypothetical protein	U5TMH5	Satellite_phage	1.0e-63	100.0
WP_000053920.1\|1508615_1508840_+	RstC protein	U5TMI6	Satellite_phage	1.1e-34	100.0
WP_000693566.1\|1509351_1509690_-	helix-turn-helix transcriptional regulator	U5TNA1	Satellite_phage	7.3e-54	100.0
WP_000743997.1\|1509815_1510895_+	replication initiation factor domain-containing protein	U5TQR3	Satellite_phage	2.2e-213	100.0
WP_001911548.1\|1510896_1511256_+	hypothetical protein	A0A0N9HE73	Vibrio_phage	4.4e-65	100.0
WP_000493022.1\|1511390_1511639_+	colonization factor	A0A0N7F140	Vibrio_phage	8.8e-33	100.0
WP_001268534.1\|1511745_1512933_+\|coat	minor coat protein pIII	A0A142I701	Vibrio_phage	1.4e-200	100.0
WP_000979342.1\|1512929_1513223_+	accessory cholera enterotoxin	A0A0F6YNQ7	Vibrio_phage	3.7e-46	100.0
WP_000021616.1\|1513219_1514419_+	zonula occludens toxin ZOT	A0A142I6Z1	Vibrio_phage	5.3e-240	100.0
WP_001881225.1\|1514510_1515287_+	cholera enterotoxin catalytic subunit CtxA	A0A142I6Y0	Vibrio_phage	1.3e-151	100.0
WP_000593519.1\|1515283_1515658_+	cholera enterotoxin binding subunit CtxB	A0A142I6Y1	Vibrio_phage	5.9e-65	100.0
WP_000517815.1\|1516115_1529639_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	B3Y8K3	Vibrio_virus	8.4e-07	100.0
WP_001881196.1\|1529662_1530124_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA
WP_001906284.1\|1530149_1530497_-	hypothetical protein	NA	NA	NA	NA
WP_149591715.1\|1530923_1533029_+	RTX toxin T1SS ABC transporter subunit RtxB	W8CYL7	Bacillus_phage	4.9e-39	27.1

DBSCAN-SWA_4

2271405 : 2278598

Anguillid_herpesvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162850.1\|2271405_2271834_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4
WP_000107237.1\|2272037_2273327_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.7e-34	34.3
WP_000872176.1\|2273546_2273741_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_001124187.1\|2273789_2274128_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_001196560.1\|2274141_2275992_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.3e-106	41.1
WP_001105747.1\|2276015_2276531_-	co-chaperone HscB	NA	NA	NA	NA
WP_000301571.1\|2276579_2276903_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_000331703.1\|2276963_2277347_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000775253.1\|2277383_2278598_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	30.5

DBSCAN-SWA_5

2405759 : 2465169

uncultured_virus(42.86%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001920874.1\|2405759_2407259_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_000546748.1\|2407248_2408004_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	5.5e-33	36.9
WP_001918292.1\|2408134_2409700_+	hypothetical protein	NA	NA	NA	NA
WP_000805082.1\|2409790_2413483_-	conjugal transfer protein TraN	NA	NA	NA	NA
WP_000735886.1\|2413485_2414514_-	TraU family protein	NA	NA	NA	NA
WP_001189235.1\|2414497_2415622_-	hypothetical protein	NA	NA	NA	NA
WP_001166558.1\|2415632_2416145_-	S26 family signal peptidase	NA	NA	NA	NA
WP_001044650.1\|2416128_2416476_-	hypothetical protein	NA	NA	NA	NA
WP_000648042.1\|2416468_2418868_-	type IV secretion system protein TraC	NA	NA	NA	NA
WP_001228926.1\|2418867_2419560_-	DsbC family protein	NA	NA	NA	NA
WP_000356587.1\|2419691_2420630_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_000095578.1\|2420622_2421414_-	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA
WP_000180223.1\|2421634_2422021_-	hypothetical protein	NA	NA	NA	NA
WP_001944091.1\|2422017_2422590_-	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA
WP_000647305.1\|2422664_2423954_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_001911237.1\|2423956_2424853_-	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_000667170.1\|2424836_2425463_-	hypothetical protein	NA	NA	NA	NA
WP_000433891.1\|2425459_2425741_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_001167482.1\|2426029_2426617_+	hypothetical protein	NA	NA	NA	NA
WP_000033757.1\|2426643_2427279_-	DUF4400 domain-containing protein	NA	NA	NA	NA
WP_000546514.1\|2427265_2427826_-	hypothetical protein	NA	NA	NA	NA
WP_000661888.1\|2427835_2429656_-	conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_000475916.1\|2429704_2431855_-	TraI domain-containing protein	NA	NA	NA	NA
WP_001125250.1\|2431976_2432792_-	abortive infection family protein	NA	NA	NA	NA
WP_000158025.1\|2432826_2433597_-	hypothetical protein	NA	NA	NA	NA
WP_000279702.1\|2433623_2435675_-\|protease	protease Lon-related BREX system protein BrxL	NA	NA	NA	NA
WP_000567536.1\|2435713_2438017_-	PglZ domain-containing protein	NA	NA	NA	NA
WP_000779609.1\|2438029_2441770_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_000152592.1\|2441774_2445464_-	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_001115853.1\|2445476_2446025_-	hypothetical protein	NA	NA	NA	NA
WP_000653856.1\|2446008_2446809_-	DUF1819 family protein	NA	NA	NA	NA
WP_000180270.1\|2446826_2447747_-	WYL domain-containing protein	NA	NA	NA	NA
WP_000284114.1\|2448064_2448364_-	hypothetical protein	NA	NA	NA	NA
WP_000196209.1\|2448451_2449357_-	DNA polymerase III subunit epsilon	A0A2H4P6W5	Pseudomonas_phage	3.1e-06	26.4
WP_000182836.1\|2449740_2449998_-	hypothetical protein	NA	NA	NA	NA
WP_000116661.1\|2449996_2450446_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	4.1e-36	57.1
WP_001883756.1\|2450453_2450723_+	hypothetical protein	A0A218MNF2	uncultured_virus	9.3e-28	76.3
WP_001122813.1\|2451436_2452648_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.2e-51	51.4
WP_001043260.1\|2454462_2455278_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_001082316.1\|2455338_2456142_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	3.8e-24	34.3
WP_000480968.1\|2456141_2456978_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001120891.1\|2456949_2457489_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001255015.1\|2457600_2457906_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000214119.1\|2457933_2459148_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	4.2e-19	28.7
WP_001447541.1\|2459364_2460249_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_001120888.1\|2460279_2461773_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000985631.1\|2462190_2465169_-\|transposase	Tn3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2608056 : 2615280

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279365.1\|2608056_2608944_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	4.1e-56	41.1
WP_001894770.1\|2609211_2611800_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.2e-33	23.0
WP_000116737.1\|2611892_2612900_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.0e-35	34.2
WP_000177568.1\|2612973_2613909_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.8e-05	34.7
WP_000002982.1\|2613908_2614535_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	52.1
WP_000698379.1\|2614527_2615280_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.0e-69	53.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage