CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP038513	Aeromonas sp. 2692-1 chromosome, complete genome	15 crisprs	RT,WYL,csa3,cas3,DEDDh,DinG	6	2	9	0
NZ_CP038514	Aeromonas sp. 2692-1 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP038513_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_1

87909-88007

Orphan

Consensus_repeat	Method
CCAAAATGTCGAAACGAATGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_1

>merge|NZ_CP038513|1|87909-88007|CRISPRCasFinder
CCAAAATGTCGAAACGAATGCGGCACCTTACCAACCCGCTTTCAACGCCATGCCTGATAACGACTCATGTCACCACCAACATGTCGAAACGAATGCGGC

>NZ_CP038513|1|1|87909-88007|CRISPRCasFinder
CCAAAATGTCGAAACGAATGCGGC	ACCTTACCAACCCGCTTTCAACGCCATGCCTGATAACGACTCATGTCACCA
CCAACATGTCGAAACGAATGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_171281186.1\|83172_83889_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP038513.1\|WP_171279695.1\|91798_92224_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP038513.1\|WP_017411099.1\|81405_82719_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP038513.1\|WP_005304873.1\|91074_91392_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP038513.1\|WP_011707344.1\|86465_87029_+\|DUF2799-domain-containing-protein	unknown	unknown	gnl\|CDD\|378521
NZ_CP038513.1\|WP_102987980.1\|83889_85203_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP038513.1\|WP_101150572.1\|79758_81384_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381139
NZ_CP038513.1\|WP_171279691.1\|76886_78953_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279690.1\|76328_76793_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279697.1\|92895_93900_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP038513.1\|WP_005304871.1\|90509_90986_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP038513.1\|WP_123785047.1\|90176_90392_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279696.1\|92366_92813_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP038513.1\|WP_171279694.1\|91537_91765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225562
NZ_CP038513.1\|WP_043166132.1\|87079_87901_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523
NZ_CP038513.1\|WP_011707343.1\|85417_86257_-\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP038513.1\|WP_171279692.1\|78922_79648_+\|DUF3142-domain-containing-protein	unknown	unknown	gnl\|CDD\|371478
NZ_CP038513.1\|WP_171279693.1\|88172_89414_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP038513.1\|WP_011707347.1\|89580_90201_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP038513.1\|WP_171279698.1\|94091_94535_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240034

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_171281186.1\|83172_83889_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.23048e-16
NZ_CP038513.1\|WP_171279695.1\|91798_92224_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.21271e-20
NZ_CP038513.1\|WP_017411099.1\|81405_82719_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.22259e-166
NZ_CP038513.1\|WP_005304873.1\|91074_91392_-\|hypothetical-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	0.00960974
NZ_CP038513.1\|WP_011707344.1\|86465_87029_+\|DUF2799-domain-containing-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	5.77187e-28
NZ_CP038513.1\|WP_102987980.1\|83889_85203_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	8.29865e-165
NZ_CP038513.1\|WP_101150572.1\|79758_81384_+\|hypothetical-protein	gnl\|CDD\|381139	cd17624, REC_OmpR_PmrA-like, phosphoacceptor receiver (REC) domain of PmrA-like OmpR family response regulators. This subfamily contains various OmpR family response regulators including PmrA, BasR, QseB, tctD, and RssB, which are components of two-component regulatory systems (TCSs). The PmrA/PmrB TCS controls transcription of genes that are involved in lipopolysaccharide modification in the outer membrane of bacteria, increasing bacterial resistance to host-derived antimicrobial peptides. The BasS/BasR TCS functions as an iron- and zinc-sensing transcription regulator. The QseB/QseC TCS activates the flagella regulon by activating transcription of FlhDC. The RssA/RssB TCS regulates swarming behavior in Serratia marcescens. OmpR family DNA-binding response regulators contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	0.000522463
NZ_CP038513.1\|WP_171279697.1\|92895_93900_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	2.26358e-172
NZ_CP038513.1\|WP_171279696.1\|92366_92813_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.18834e-55
NZ_CP038513.1\|WP_005304871.1\|90509_90986_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.22775e-48
NZ_CP038513.1\|WP_171279694.1\|91537_91765_-\|hypothetical-protein	gnl\|CDD\|225562	COG3017, LolB, Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0.00926375
NZ_CP038513.1\|WP_043166132.1\|87079_87901_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	7.51279e-84
NZ_CP038513.1\|WP_011707343.1\|85417_86257_-\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	2.73454e-38
NZ_CP038513.1\|WP_171279692.1\|78922_79648_+\|DUF3142-domain-containing-protein	gnl\|CDD\|371478	pfam11340, DUF3142, Protein of unknown function (DUF3142). This bacterial family of proteins has no known function.	1.28903e-14
NZ_CP038513.1\|WP_171279693.1\|88172_89414_-\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.99623e-41
NZ_CP038513.1\|WP_011707347.1\|89580_90201_+\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.14517e-53
NZ_CP038513.1\|WP_171279698.1\|94091_94535_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240034	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.33097e-52

>NZ_CP038513.1|WP_043166132.1|87079_87901_-|Cof-type-HAD-IIB-family-hydrolase
MSRFQAIALDMDGTLLTRDHKISSATRAALAQARAHGIKVLLVTGRHFMTARPFHHELALDTPIICSNGAYLYDPVQEQILTGDPLAVAPLSRLLAEVQAHQMGALFHLDEGIGYLGCEEHVTRMRHWSATQPDHLKISLLPAEDLASWLSRPVWKLELFNQDPALLHHFMAEVVEQLPFTRDWAAPYAVELVQPGCSKGNRLAQWAASEGIAMENVVAFGDNNNDISMFEQVGLAVAMGNAASQIQALADRVTADHNEDGIALALQRWVLPA
>NZ_CP038513.1|WP_011707344.1|86465_87029_+|DUF2799-domain-containing-protein
MSPKILLLTLPFLLAGCSSLSEEECRTMSWYNLGYQDGEQGKTRAATRDYVSTCGEYGLKVDEAEWKRGYAKGLELYCIPELAYSKGKSGAEYQGVCPNDASFLTQYDRGRQEYLVEKQLSDLKSDMERTERDIETLERQIRNENDSKQRDYYRAQRERAIRHYEGLRRDYNRIRFPDRVIQFSFGN
>NZ_CP038513.1|WP_011707343.1|85417_86257_-|isopenicillin-N-synthase-family-oxygenase
MKVLTVDYRSPDAAQRFTESLRTTGFGVLTNHPIPKELVQSIYDNWYRFFMSEQKQDFLFNRETQDGYFPPSVSEVAKGHSQKDIKEYFHLYPWGQMPAELKEQAMEYYRLANNLAAELLGWVEQYTPSDIAAHYSCPLSSMIEESQKTLLRVLHYPPFDGTEEPGAIRAAAHEDINLLTILPAANEPGLQVKGSDGEWMDVPCDFGTLIINIGDMLQEASHGYYPSTTHRVINPTGGSAAKSRISLPLFLHPRPDVVLSERHTAHSYLMERLRELGVI
>NZ_CP038513.1|WP_102987980.1|83889_85203_-|sodium-dependent-transporter
MKQSQWSSRLGYILAAAGSAVGLGAIWKFPYVTAANGGGAFLLVFLLFSFTLGVAVLMGETLLGSLSRRGVVGAFGALMGKRWRWVGAMGLLSSLLIYSFYSVVGGWTLGYTGMALAGSLQHGDGAALTARFNDYVGDPLWPVLTHLLFAGLTWWFVQGGVQKGVERTLRWMMPALFIMILMLVAFGLTLPNAMAGVRHFLMPDFSKLGMSGVLDAMGLAFFSLSIGLGIHTTYGAYLPSSDGVGRSSLWVVLLASLIAVLAGLMIFPVLAATGIDPASGPGLTFMTMPAVFQQLPFGQGLAVVFFALLVVAALSSAISLLEHLQCFVSESLGWSRRAACGLITALVMAGGIPVSLSFGPWAQVTLFGKNIFELLDFVTSNLMMPMFGLALTLLLGWKLGRQALPTGLALHWRTLVMGCWRWLAPLLIGGILVRGLV
>NZ_CP038513.1|WP_171281186.1|83172_83889_+|transporter-substrate-binding-domain-containing-protein
MKWLLPWLLLPTLAQATQPPLTLLSHELPPFTHTSDGKLGGLAVQLVQEAQQEMGVDYPIKIYPLKRALALTRVEPGFALFVILRTPQREPQFKWVGPLFLNRVVIYQARGSQPLTDLAQLRQLARVGVLLGNADDELLTREGYTNLVRCQTIEDAIERLMLGKIDAFPMGEQIMPAILAKMKFSPRSVVNSGLLLQENWLYIVFSKSEDDAVIARWQAAIDKVRDRHQQAQQPIRQP
>NZ_CP038513.1|WP_017411099.1|81405_82719_-|sodium-dependent-transporter
MSQVQWSSRIGHVLAAAGSAIGLGAIWKFPYVTATNGGGAFLLMFLLFSFTLGVAVLVGETLLGSRSQRGVLGAFHKLVGPNWRWMGYMGILCGFFIYSFYSVVGGWTVGYAALAVSGQLNLSEGAALTALFNGYVSHPWWPVLTHLVFAGLTWWFVQGGLQKGVERALRWMMPALFVMMMLLVVTGLSMPGAMAGVRQFLLPDFSMLTGQGVLDALGLAFFSLSIGLGVHTTYGAYLPSSEGVLRSGVWVVTLASLISVLAGLMIFPVLASTGIDPTAGPGLTFMTMPAVFNHLPFGQGLAVVFFLLLLVAALSSSISMLEHLVRFTTEEWGWSRRGACRVLTLLIMASGIPVSLSFGPWSELTLFGKTIFDLLDYLTSNLMMPLFGLVLTLLLGWRLGESVLPAGLSPLLRGCLLWCWRLVAPLLIAGILVRGLL
>NZ_CP038513.1|WP_101150572.1|79758_81384_+|hypothetical-protein
MQILLIEDDAMLSTALSRGLNEQGITPAQLTHCKELATLPTLLRQQSFDVVICRQYHHQAREGVRLLQEAHYLGLLEPGCVLLLLDEDHDQLQFPPSDLYFPLLLPMPFTADQLTASLRELVQLTGLTRTLPAPMKLREWQVSCALCEDLLYQQQKYRELGPLLDRIKGYMLLQHQDHFHAAQHYAVCTTEHDAWWPRKGLIHALLGLNKLESARKDLARNRERLPAPLQLELALACLLHERQWEGAWDVLTLLLQKQAWQPEWRQAAILLALLLKDEGKALEQANALSLRFFGDHKFRVSIDNFILNASLAVLWHYPSAARISALQQEYRYLSQAVTLRAHEEALLKALMLSLDYRFDEALLLLAKHPPESARDHHLNQLLGFAVSQFCGLPHHAQRYLSQLSQYQARVAPAPLVQQLFKQVIGDFMKQLERRELRLTYLRQERQRASAAGQHQLAVQYALTLQEEFPALPGDAWQLLELLQLCWPAGMAAPRVALLVDRLERRLNHSASFMEHHAEEYHKTLLQIRSHLNPRLPTTPPN
>NZ_CP038513.1|WP_171279692.1|78922_79648_+|DUF3142-domain-containing-protein
MGQAAQILLVMLALLGAETSAAVEASHYRQFWLWAGVRPQPVLQQAERLYLHQGEIGPLDARQPVRFQGQGIAPSKLPVKELWLAYRVERLDWDEALLKNLTNQLAAWQRKGNEVRGVQIDFDARTHRLADYGDFLRQLRRQLPADCAISITGLLDWTRTGDVATLNALAGVVDELVVQTYRGRRTEPGYARYLQALTRLTLPFKVGLVQGGEWDPTWESRLADSAAYRGAVVFLINPPGA
>NZ_CP038513.1|WP_171279691.1|76886_78953_+|hypothetical-protein
MKLTPLWLALCSLPALACGPDGCETPLTLQLTAAQCHLNGLPFLSPDNDTRTNLALLLADEQAFSLPKAPLPLPFAIEDLLNPALLNPTQAEPAPAVPDPLLALAAGLGIEQSTTQAALERAAGWSEGRCISNNPIAAEAFLQALVDTPALGADERSQLARQRLAMLGQCAQQVETATTPEDKSTPLSAAGQGFADYLAASRLFYQGEFAQADALFAALAGQDQPWLKETADYMRIRVALNQSQQSAFDDWGTLDRNQIDQAAVQRAEQFIADYRSRYPEGRYLDSANGLLRRLAWFKGDEAALASLFQQASRQPGNPVLLNEIDLKLLMQPGFTGSAAMPQLTLVQDLRRLRLHESWDEWQPLQSGELAQQTAQFASNPAWLAYLQQAERYYLAKDYAAVIAAAPALGKGPLDNLAFSQQVLKGMALAASQALPEAEQQWRALLASQPTPLQDQLLQLALAMTLERAGRLEQVFAKESPIQSDHYRIPLLEYVAPAPLLRRMVQDEQASDTLRQRAGHTLRYKQLTHGDYQGFLQDLALAPLAAPFDWQGSQEYQCQALTAVVTTLADNPNSPKALNCLGEFFLSQGLDWDPLLQRPGADTLAGSRDLFAGQQRSRLDWYQQVIANPKAAKEEKAYALYRAINCYAPSGNNSCGSQEIPLSQRKGWFNTLKRQYGTSQWAKQLKYYW
>NZ_CP038513.1|WP_171279690.1|76328_76793_+|hypothetical-protein
MHPTRAPLLLLTLLLGGCAAPVHQQLGAALSGLEGELQRLEEELAAMNGLHYQKAIDAPLSLRRRLSAPVPTAEGLLPSRSTLTDGPLLRYDYRLPAGMASLPLAEPCLRYEFELRHLGRLGQLALHWQGAAGSGEQLIQQRDCPFSANGPGLQ
>NZ_CP038513.1|WP_171279693.1|88172_89414_-|MFS-transporter
MEGIKGQASLWVLVMTVTLAVAGFSLPSPVLAPLLLDPAQGMLTPAASDWSRKVWLGVIMGLYPLFQLVGAPWLGKLSDRHGRKPVLTLCLVGVLVGYALMALGIAWRSLPLLLLSRVVEGFFNGDIAIVQAMAADMSTAKTKARSFAWINIGMNLGWVVGPMIGGYAAVVSGDYSLAAWLAVAMTLVNLLLVLWLLPNRPAATRSEQPAPALSSRQLLLQPALLPYFVLTLLSYGAVQLYFTYFNVWLVERLAWDPVQLAQAAVLVSVPMILGSWLGSRLARHWRGSSLGVVGHLVMAAGMLMFVLPGHWWGLALTFIPTGIGMSLGELATSVAVSNRSHAEQQGQAMGLYRGLAVGSEILAVVVGSLVLLAGTEWPFYLAALCSLLCAVGFYGLRRAADRRQRLDVQVEAG
>NZ_CP038513.1|WP_011707347.1|89580_90201_+|transcriptional-regulator
MNASTDKILFLLKSHGPQSAAELGEQLQMTSMGARQHLMTLEADGWVSFNDEARGRGRPVRLWHLTEQAWQRFPDSHSELTLQLIDNIQQLFGEVGMERLIAQREQQQLARYQAELTQPALADRLAALTAQRTREGYMADFRQEEDGSWLLWESHCPICAAARACRGFCRSELEMFRRLLAPAGVEREQYLLEGDHRCLYRIRPQP
>NZ_CP038513.1|WP_123785047.1|90176_90392_-|hypothetical-protein
MVTSSGGKTETQPGLCGEGPYRVNNPISRLTLSGNDGLEREHPLPEGNKAGIPAPALLFLAFADQGCGLMR
>NZ_CP038513.1|WP_005304871.1|90509_90986_+|Lrp/AsnC-family-transcriptional-regulator
MLKLDRIDRHILELMQENGRISNLELAELVGLSPSPCSRRVKALEDAGLIDTHVTLLNARQLGLTLTAYIHISMDRHTPERFENFDRAISELPEVLECDLITGNDADYQLKVVVRDMEHYQHFLLDKLTHIPGVTGVRSSFVLRRIKHKTALPLNHLG
>NZ_CP038513.1|WP_005304873.1|91074_91392_-|hypothetical-protein
MQSSLVGLSILWGLASFGVQGDFIESRDSVAPSWQAESRVEMEGYLIESLGEDRWLFDNGSESLLVSLPQGQWVPTGERLRVSGEPQQEQAGWLLQVQDVSQVAV
>NZ_CP038513.1|WP_171279694.1|91537_91765_-|hypothetical-protein
MKLLLPLFALLLTACSSGSHAPSMAIDDADAWQAICKDGTRVRAVVEEGICADHRGVAMWTNKPRAARMAEEAAK
>NZ_CP038513.1|WP_171279695.1|91798_92224_-|MarR-family-transcriptional-regulator
MSELKKQVCFALYSASNAVMRAYRPLLDKLDLTYTQYLVMLSLWARDEVSLKEIGQETGLDAGTLTPIVKRLESKGWLTRTVSREDERQKCIGLTEAGRQLQQEVRECCLADNLRNQVDLADAELAQLKQLCDRISAQLGR
>NZ_CP038513.1|WP_171279696.1|92366_92813_+|organic-hydroperoxide-resistance-protein
MKTLYRTQAIAQAGRNGEVHTLDNSLQLALALPTALGGNGKGNNPEQLLAAGYAACFSNALIHVAHKLGAPLSSAPVTAGVELLALDGGRFNFAITLDVALAATQPEQAAQAEQIVRLAHQTCPFSNAMRGNVVTRLLLNGAPLDETA
>NZ_CP038513.1|WP_171279697.1|92895_93900_+|NADP-dependent-oxidoreductase
MNQSSHQIQLLRRPVGLPSLADFTLTEVALPELQEGEVRVANQWLSVDPYMRGRMSEAKSYVPPFPLNGPLDGGAIGVVEASRHPDFAVGDRVSSMLGWRDRFVANGAQLTRLPDTRLPPQLFLGALGMPGMTAWTGLNRIAKLQAGETVLVSAASGAVGSMVVQLAKRAGARVIGSTGSPDKVAYLKSLGADEVINYRETPDLDAELARLAPDGIHVYFENVGGAMLDAALNHMVVHGRIVMCGLIEQYNGQSEASGPRNLSQVIRKRLTMQGLIVFDHWQHYGEFLAEVTPAFDAGTLQAEETVYQGLASMPQAFIGLFEGRNTGKMLVKLA
>NZ_CP038513.1|WP_171279698.1|94091_94535_+|NUDIX-domain-containing-protein
MSTPYPRVGVGVILTNRQGQVLLGKRKGSHAPYWSIAGGHLELGETFESAAIREVAEETGFQISNPSVIAVTNNLETWRESGLHYVSVTLLAEVEGEPQLLEPEKCEGWVWCDPRNLPEPHFDASRQSIACWLAGRCYLPTPHQPTS

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Crispr_ID: NZ_CP038513_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_2

94006-94117

Orphan

Consensus_repeat	Method
TATGTCTACTCCCTATCCCCACGTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_2

>merge|NZ_CP038513|2|94006-94117|CRISPRCasFinder
TATGTCTACTCCCTATCCCCACGTCGGCGGTCGATGACAGAGTGATCCTGACCAACCCATTACCCCCTCAGCAAGGAGCTCTTCTTATGTCTACTCCCTATCCCCGCGTCGG

>NZ_CP038513|2|2|94006-94117|CRISPRCasFinder
TATGTCTACTCCCTATCCCCACGTCGG	CGGTCGATGACAGAGTGATCCTGACCAACCCATTACCCCCTCAGCAAGGAGCTCTTCT
TATGTCTACTCCCTATCCCCGCGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_171279695.1\|91798_92224_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP038513.1\|WP_171279699.1\|94760_95912_+\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP038513.1\|WP_024945827.1\|110329_111139_-\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|182745
NZ_CP038513.1\|WP_011707358.1\|103377_104373_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP038513.1\|WP_171279703.1\|104488_105355_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP038513.1\|WP_005304873.1\|91074_91392_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP038513.1\|WP_171279704.1\|105425_106499_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP038513.1\|WP_017411114.1\|95991_96384_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP038513.1\|WP_171279693.1\|88172_89414_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP038513.1\|WP_171279697.1\|92895_93900_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP038513.1\|WP_005304871.1\|90509_90986_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP038513.1\|WP_123785047.1\|90176_90392_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279701.1\|98581_100759_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP038513.1\|WP_171279702.1\|100841_103031_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831
NZ_CP038513.1\|WP_171279696.1\|92366_92813_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP038513.1\|WP_139750004.1\|106639_108745_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038513.1\|WP_043166132.1\|87079_87901_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523
NZ_CP038513.1\|WP_171279700.1\|96440_98582_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP038513.1\|WP_011707347.1\|89580_90201_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP038513.1\|WP_171279694.1\|91537_91765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225562

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_171279695.1\|91798_92224_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.21271e-20
NZ_CP038513.1\|WP_171279699.1\|94760_95912_+\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.21013e-65
NZ_CP038513.1\|WP_024945827.1\|110329_111139_-\|tol-pal-system-protein-YbgF	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	6.11429e-64
NZ_CP038513.1\|WP_171279703.1\|104488_105355_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	1.7341e-120
NZ_CP038513.1\|WP_005304873.1\|91074_91392_-\|hypothetical-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	0.00960974
NZ_CP038513.1\|WP_171279704.1\|105425_106499_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP038513.1\|WP_017411114.1\|95991_96384_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	3.20681e-74
NZ_CP038513.1\|WP_171279693.1\|88172_89414_-\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.99623e-41
NZ_CP038513.1\|WP_171279697.1\|92895_93900_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	2.26358e-172
NZ_CP038513.1\|WP_005304871.1\|90509_90986_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.22775e-48
NZ_CP038513.1\|WP_011707358.1\|103377_104373_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP038513.1\|WP_171279701.1\|98581_100759_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP038513.1\|WP_171279702.1\|100841_103031_-\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP038513.1\|WP_171279696.1\|92366_92813_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.18834e-55
NZ_CP038513.1\|WP_139750004.1\|106639_108745_+\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.68276e-64
NZ_CP038513.1\|WP_043166132.1\|87079_87901_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	7.51279e-84
NZ_CP038513.1\|WP_171279700.1\|96440_98582_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP038513.1\|WP_011707347.1\|89580_90201_+\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.14517e-53
NZ_CP038513.1\|WP_171279694.1\|91537_91765_-\|hypothetical-protein	gnl\|CDD\|225562	COG3017, LolB, Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0.00926375

>NZ_CP038513.1|WP_171279697.1|92895_93900_+|NADP-dependent-oxidoreductase
MNQSSHQIQLLRRPVGLPSLADFTLTEVALPELQEGEVRVANQWLSVDPYMRGRMSEAKSYVPPFPLNGPLDGGAIGVVEASRHPDFAVGDRVSSMLGWRDRFVANGAQLTRLPDTRLPPQLFLGALGMPGMTAWTGLNRIAKLQAGETVLVSAASGAVGSMVVQLAKRAGARVIGSTGSPDKVAYLKSLGADEVINYRETPDLDAELARLAPDGIHVYFENVGGAMLDAALNHMVVHGRIVMCGLIEQYNGQSEASGPRNLSQVIRKRLTMQGLIVFDHWQHYGEFLAEVTPAFDAGTLQAEETVYQGLASMPQAFIGLFEGRNTGKMLVKLA
>NZ_CP038513.1|WP_171279696.1|92366_92813_+|organic-hydroperoxide-resistance-protein
MKTLYRTQAIAQAGRNGEVHTLDNSLQLALALPTALGGNGKGNNPEQLLAAGYAACFSNALIHVAHKLGAPLSSAPVTAGVELLALDGGRFNFAITLDVALAATQPEQAAQAEQIVRLAHQTCPFSNAMRGNVVTRLLLNGAPLDETA
>NZ_CP038513.1|WP_171279695.1|91798_92224_-|MarR-family-transcriptional-regulator
MSELKKQVCFALYSASNAVMRAYRPLLDKLDLTYTQYLVMLSLWARDEVSLKEIGQETGLDAGTLTPIVKRLESKGWLTRTVSREDERQKCIGLTEAGRQLQQEVRECCLADNLRNQVDLADAELAQLKQLCDRISAQLGR
>NZ_CP038513.1|WP_171279694.1|91537_91765_-|hypothetical-protein
MKLLLPLFALLLTACSSGSHAPSMAIDDADAWQAICKDGTRVRAVVEEGICADHRGVAMWTNKPRAARMAEEAAK
>NZ_CP038513.1|WP_005304873.1|91074_91392_-|hypothetical-protein
MQSSLVGLSILWGLASFGVQGDFIESRDSVAPSWQAESRVEMEGYLIESLGEDRWLFDNGSESLLVSLPQGQWVPTGERLRVSGEPQQEQAGWLLQVQDVSQVAV
>NZ_CP038513.1|WP_005304871.1|90509_90986_+|Lrp/AsnC-family-transcriptional-regulator
MLKLDRIDRHILELMQENGRISNLELAELVGLSPSPCSRRVKALEDAGLIDTHVTLLNARQLGLTLTAYIHISMDRHTPERFENFDRAISELPEVLECDLITGNDADYQLKVVVRDMEHYQHFLLDKLTHIPGVTGVRSSFVLRRIKHKTALPLNHLG
>NZ_CP038513.1|WP_123785047.1|90176_90392_-|hypothetical-protein
MVTSSGGKTETQPGLCGEGPYRVNNPISRLTLSGNDGLEREHPLPEGNKAGIPAPALLFLAFADQGCGLMR
>NZ_CP038513.1|WP_011707347.1|89580_90201_+|transcriptional-regulator
MNASTDKILFLLKSHGPQSAAELGEQLQMTSMGARQHLMTLEADGWVSFNDEARGRGRPVRLWHLTEQAWQRFPDSHSELTLQLIDNIQQLFGEVGMERLIAQREQQQLARYQAELTQPALADRLAALTAQRTREGYMADFRQEEDGSWLLWESHCPICAAARACRGFCRSELEMFRRLLAPAGVEREQYLLEGDHRCLYRIRPQP
>NZ_CP038513.1|WP_171279693.1|88172_89414_-|MFS-transporter
MEGIKGQASLWVLVMTVTLAVAGFSLPSPVLAPLLLDPAQGMLTPAASDWSRKVWLGVIMGLYPLFQLVGAPWLGKLSDRHGRKPVLTLCLVGVLVGYALMALGIAWRSLPLLLLSRVVEGFFNGDIAIVQAMAADMSTAKTKARSFAWINIGMNLGWVVGPMIGGYAAVVSGDYSLAAWLAVAMTLVNLLLVLWLLPNRPAATRSEQPAPALSSRQLLLQPALLPYFVLTLLSYGAVQLYFTYFNVWLVERLAWDPVQLAQAAVLVSVPMILGSWLGSRLARHWRGSSLGVVGHLVMAAGMLMFVLPGHWWGLALTFIPTGIGMSLGELATSVAVSNRSHAEQQGQAMGLYRGLAVGSEILAVVVGSLVLLAGTEWPFYLAALCSLLCAVGFYGLRRAADRRQRLDVQVEAG
>NZ_CP038513.1|WP_043166132.1|87079_87901_-|Cof-type-HAD-IIB-family-hydrolase
MSRFQAIALDMDGTLLTRDHKISSATRAALAQARAHGIKVLLVTGRHFMTARPFHHELALDTPIICSNGAYLYDPVQEQILTGDPLAVAPLSRLLAEVQAHQMGALFHLDEGIGYLGCEEHVTRMRHWSATQPDHLKISLLPAEDLASWLSRPVWKLELFNQDPALLHHFMAEVVEQLPFTRDWAAPYAVELVQPGCSKGNRLAQWAASEGIAMENVVAFGDNNNDISMFEQVGLAVAMGNAASQIQALADRVTADHNEDGIALALQRWVLPA
>NZ_CP038513.1|WP_171279699.1|94760_95912_+|chromate-efflux-transporter
MGQVFIQFLWLGCVSFGGPAAHIGYFQRTFVERLGWLTQAEFAQLLALCQLLPGPASSQLGFAIGRQRAGLGGALAAFAGFTLPSFLLLLAAAIGLGQLGNNVWLDATLHGLKLLALVVVADAVLTMSRQFCKTTRNQGIMVATAAALWWQPGLLTQLVMLAGAALLCARVGEPQTPGPQPSPAQSIPVHQPHWPTLLLFALLFVGLPLLGGPVGQLVADFYRAGSLVFGGGHVVLPLLAESVGHSLNQQQFLTGYSLAQLVPGPMFTLATYLGAQLLPATPVGGALLATLALFLPGFLLLWAMGPCWQSWLARPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPTDQALAAVGFYLLRGLKLPILALATLLVVATLLLA
>NZ_CP038513.1|WP_017411114.1|95991_96384_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSGNTPNPEQWRRQLSAEQYHVCWEKGTERPYSGALLHNRKSGDYLCVCCKQVLFHSDAKFDSGCGWPSFDRAIEGTVTYTEDGSHGMKRVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLDFDPEP
>NZ_CP038513.1|WP_171279700.1|96440_98582_-|glycogen-debranching-protein-GlgX
MFAMEKGQDHPLGALLDETGCHFCVWAPQSDKVELCLFDEQERELARLELPGRRGQYRFGHVRGVKAGQRYGYRVHGTLQEGMLFDPDKLLIDPYAKALSRPTHWDDALYQGDSAAMVAKSVVVDDAFDWQGVGKPAIEPARTVIYETHVKGFTRQHQGVPSELRGTYLGICHPLIIEHLKSLGITSVQLMPVAAFMSEPRLEQLGLTNYWGYNPIAFFAPEPRYAAQEAVTEFKTMVRELHRAGLEVILDVVYNHTAESGFDGPMLSFKGFDNAGYYAFEAGAHGPDYTRHANVTGCGNSVNLDHPNSLRLVLDALRYWVTEMQVDGFRFDLAVTLAREAGEFDPMGAFFKAMMADPVLARVKLIAEPWDIGPFGYRLGQFPSQWLEINDRYRDTVRAFWRGDAGKMGDFATRLVGSRDLFPKNWRSPHTSVNYLCYHDGFTLEDLVSYNQRHNQANGEDNRDGHGNNLSNNHGVEGPTLDPRVNNLRQQQKRNLIATLLLSQGTPHFLAGDEMGRSQLGNNNAYCQDNQISWVNWQWRPEDERLLAFTQQMLALRAESTVFSNLQLSDDSWNGAPSSCHQVNWYHPDGHQLTDQDWHAPMGQAFAMDIGMIGCGGERWYVLFNASDYDIQFRLPPPGEGLEWIQTIDTATNDGLPFLPDDIKRQVAVGRAHSLKLLERVALSAVALAEEGVVATPDVAVVLPSGSQFPLAG
>NZ_CP038513.1|WP_171279701.1|98581_100759_-|1,4-alpha-glucan-branching-protein-GlgB
MLVERLVAARCSDPFSHLGLQANPDGPGLKLTVWLPDAQAVRVRDLKSGKIVATLAPTDDSGLFETVFTRRKNPFPYQLLADYPDVTVEVIDPYQFQDAGWAGLAELTYQPENLYHTLGAQLRTVAHLDQQVEGVRFAVYAPSATAVSLIGDFNFWDGRRHPMQRSQCGHWVLFVPGLKAGDRYKFELKDPAGNRLPHKSDPVGFYCEQYPSFASVVYDHDQYQWQDAAWRESQLNDKREQPLSIYELHVGSWKRHPNGDSLSWRELAVELVDYVKRMEYTHIELLPVSEHPFSGSWGYQPVGMFSPTSRYGTADDFKYFVDQCHQAGIGVILDWVPAHFPSDAHGLARFDGTPLYEYEDPRRGWHPDWNSYIYDFGRNTVRQFLVASVLFWLDKFHVDGLRVDAVASMLYLDYSRNAGEWVPNVDGGNHNYEAISLLKWTNEEVYGKYPHAMTIAEESTAFAGVSRPTFLGGLGFGFKWNMGWMHDTLTYMQKEPIHRRYHHNDMTFSMVYHYDENFILSLSHDEVVHGKHSMLYKMPGDEWQQAANLRAYMGFMYAHPGKKLNFMGTEIAQSNEWNHDAQLPWHLLQYPKHGGQQRLIHDLNHLYRHEAALYQADYEQNGFRWLDHNDADNSIFAWLRADKQGANPLVVACNFTPVPRLAYRLGVPAAGHYRVVLNTDSEHYWGSNYDVGLVFVAESTPWQGMAHSIVLDLPPLATLFIKQES
>NZ_CP038513.1|WP_171279702.1|100841_103031_-|4-alpha-glucanotransferase
MTTLIEQLAAAKGIASEYVDAWGHPAQVSEDSKAAMLGAMGYRVDDEAALTEQLEQEHRQHWLRALDPVMVVRSGEPITLEVRLPIEFVNDALSWQLKLEQGGLLSGQLTPIDGELVGVAEFEEMECQAYRVALAVQPELGYHDLILLEEGNDEPLASMRLIVAPKACYKQPPIANGRKVWGPSVQLYCLRSRHNWGIGDFSDLGQLVEKMAAWGAHFVGLNPIHALYPANPESASPYSPSSRRWLNVAYIDVEAVPEFLANARLKAEVANPAFQQHLSELRAKGNVDYTGVVETKLGMLRQVFDQASLSAERQAAFDAFVAAGGDSLQQQAAFDALQAHFYAKGENAWGWPVWPEPFRDYHNPEVAAWMAEHRQDVNFYLYLQFLADEQLARADARAKAAGMVMGIYRDLAVGVSEGSTEIWANRDLYCPKASVGAPPDILGPLGQNWGLPPMNPNQLFEAAYQPMVDLFRANMRSCGALRIDHVMALLRLWWVPPGESAAKGAYIYYPVNDLLGILALESHRNQCLLIGEDLGTVPEGIDVTLKENGVHSYKVFFFERSKADGGFISPAHYAEQAMSALTTHDMPTLKGFWHCDDLALGRELGLYPDEDVLKTLYADRHQAKQRILDSLHGHGVISGNISHDVNWVGMNTELNHGLQLHMSRGSCALFSTQLEDWLEMDKPVNVPGTSYEYPNWRRKLSTDLEDIFANEALKALAGKMSQARDEASR
>NZ_CP038513.1|WP_011707358.1|103377_104373_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVGINGFGRIGRFVFRLAAERSDIEVVGINDLIDVDYMAYMLKYDSTHGRFKGTVEVKDGNLVVNGKTVRVTAERDPANLKWGEIGVDVVAEATGLFLTDETARKHIAAGAKKVVLTGPSKDATPMFVMGVNDATYAGQDIVSNASCTTNCLAPIAKVLNDTFGIESGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGVVIPELKGLLTGMAFRVPTPDVSVVDLTVNLKKAATYAEICEAMKAASEGAMKGVLGYTEDEVVSTDFLGERQTSVFDAKAGIQLNDKFVKVVSWYDNEMGYSSKVLDLIAHISK
>NZ_CP038513.1|WP_171279703.1|104488_105355_+|D-hexose-6-phosphate-mutarotase
MQPTRSLTAHCTLSHHPAGQPLLTVDNGYAKAEISLFGAHVLSYQRHDEPASIWLSDKAVLDGSKPIRGGIPLCWPWFGPAPARVGSGKPSHGFARTSLWTLDGVSDLGDGTLVHLSLRDNEATRQLWPHAFELELDVLVGKELALVLTTRNTGKAPLVYSGALHTYLQISSPESVSVSGLGEPYADKLTGQNGQQQGPLTLNGPLDRVYWQPAAHVSIQDGERETRVVSGNHDSVVVWTPWIEGATAMADMSDDGYRTMLCVEAAIASEAGVTVAPDEEHSFSTVII
>NZ_CP038513.1|WP_171279704.1|105425_106499_-|quinolinate-synthase-NadA
MSNALNNVPPVVEMDYPFPAKPLPLSAEQKTTLIADIKALLKERKAVLVAHYYTDPEIQALAEETGGFVGDSLEMARFGRDHAAQTLIVAGVRFMGETSKILSPHKRVLMPTLEAECSLDLGCPIEQFSAFCNAHPDHIVVVYANTSAAVKARADWVVTSSIALEIVEHLDSQGHKIIWGPDRHLGAYIEKKTGAEMLRWQGHCIVHDEFKARALRELKEQNPDAAVLVHPESPASVIELADAVGSTSQLIKAAKELPQQKLIVATDRGIFYKMQQACPEKDMVEAPTGGDGATCRSCAHCPWMAMNGLVAIKEALTDGAERHEILVDEDLRVKALIPLDRMLNFAAELRLKTQGNA
>NZ_CP038513.1|WP_139750004.1|106639_108745_+|HAMP-domain-containing-protein
MKQRSLKTKLLLLTMGLFLASGLAMTLMQSSSLNTLRSNIVSQTRKALEQEVSRTLQFQAERYAVQIADLLQQSYQVPLGMAAQLEGSMAQPDRLLSRPQVETLLHSRLQQAGGISSIYAQFEPDGYDGQDASWQAGASHSVVGKGSLEIYFTRDQGGQISQQPVDAATSAAKYDTSVNEFGIRNSEWYLCGRDTLRPCLMEPYLYEISPGNKMLMTSLTVPVLKAGKFVGITGVDMNLPIFQQLAENLGKSLYDNQAEVTLISKMGLIVGSNRHADKLGRPLTEAGLTAPTGQEQDTETDFILQQPVRIDAADTQWWLMLKVPKALALSQANTISNQLGDLLQATQQQQLIAIVVITLLALALLIWFIQTITAPLSLISRHVSHLSSNEGDLTQQMRIDTHQELIELGGHLNAFLGKLRGMVQGSKQIGQQVHQQAQGMKQTADTMRSSLDEQSLELESVVSAMHQMSTTAVSVAGYAEQAAQESETATHHISTAQQTLSRARTEIHTLVEDMHLADKAVAQVAQRSTNISRILDVIRAIAEQTNLLALNAAIEAARAGDMGRGFAVVADEVRALANKTRESTDEIGQLIGSLQTEVNSSQQLMSTGITRSASTVEGTEQAFEALNQVVTQIQQIHDHISQVATAAEQQSAVSDTINQNLMRIGDAATTLGQEANASHHLSEQLEQAATALATQLERLRT
>NZ_CP038513.1|WP_024945827.1|110329_111139_-|tol-pal-system-protein-YbgF
MKSVYKQAVVALAVLVALNAQAAAPVSDLSGDSGGGVVLSGNNGAIVPTGSLEDRVALLERTLNARLRLQAELQQQVDSLQGEVSELRGQLEQQTYQMEQSQERQRQLYQELDKVANSQPAATPAAPAAAAASATPAAAANYSTNLNENQAYDAAVNMVLKEKNYDKAIPAFEGFIKQYPSSSYVPNAHYWLGQLLFNKGDRTGAAAQFTTVATKFSKSPKRADALLKLGMLAQLDGKKAEAKNFYEQVIKGYPNTSPAQLAKQSLSKL

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Crispr_ID: NZ_CP038513_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_3

111129-111234

Orphan

Consensus_repeat	Method
ACAGATTTCATTCGGATCAAACCTTAGCGTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_3

>merge|NZ_CP038513|3|111129-111234|CRISPRCasFinder
ACAGATTTCATTCGGATCAAACCTTAGCGTTTAGGGCAAATAAAACGGCCAGCGCCATCGTCGCTCGCTTATACAGATTTCATTCGGATCAAACCTTGGCGTTTAG

>NZ_CP038513|3|3|111129-111234|CRISPRCasFinder
ACAGATTTCATTCGGATCAAACCTTAGCGTTTAG	GGCAAATAAAACGGCCAGCGCCATCGTCGCTCGCTTAT
ACAGATTTCATTCGGATCAAACCTTGGCGTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_011707364.1\|113291_114455_-\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|368950
NZ_CP038513.1\|WP_011707363.1\|111871_113197_-\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235312
NZ_CP038513.1\|WP_005304933.1\|116396_116513_-\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
NZ_CP038513.1\|WP_011707366.1\|114906_115596_-\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP038513.1\|WP_011707365.1\|114460_114907_-\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NZ_CP038513.1\|WP_171279704.1\|105425_106499_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP038513.1\|WP_011707358.1\|103377_104373_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP038513.1\|WP_011707369.1\|116527_117664_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP038513.1\|WP_171281187.1\|116098_116344_-\|cyd-operon-YbgE-family-protein	unknown	unknown	gnl\|CDD\|370577
NZ_CP038513.1\|WP_171279699.1\|94760_95912_+\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP038513.1\|WP_017411114.1\|95991_96384_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP038513.1\|WP_011707370.1\|117676_119233_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052
NZ_CP038513.1\|WP_171279701.1\|98581_100759_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP038513.1\|WP_171279702.1\|100841_103031_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831
NZ_CP038513.1\|WP_171279698.1\|94091_94535_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240034
NZ_CP038513.1\|WP_011707367.1\|115585_115993_-\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304
NZ_CP038513.1\|WP_139750004.1\|106639_108745_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038513.1\|WP_171279700.1\|96440_98582_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP038513.1\|WP_171279703.1\|104488_105355_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP038513.1\|WP_005304908.1\|111297_111822_-\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_011707364.1\|113291_114455_-\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|368950	pfam06519, TolA, TolA C-terminal. This family consists of several bacterial TolA proteins as well as two eukaryotic proteins of unknown function. Tol proteins are involved in the translocation of group A colicins. Colicins are bacterial protein toxins, which are active against Escherichia coli and other related species (See pfam01024). TolA is anchored to the cytoplasmic membrane by a single membrane spanning segment near the N-terminus, leaving most of the protein exposed to the periplasm.	8.70811e-21
NZ_CP038513.1\|WP_011707363.1\|111871_113197_-\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235312	PRK04792, tolB, Tol-Pal system protein TolB.	0
NZ_CP038513.1\|WP_005304933.1\|116396_116513_-\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	9.94001e-13
NZ_CP038513.1\|WP_011707366.1\|114906_115596_-\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	7.20038e-107
NZ_CP038513.1\|WP_011707365.1\|114460_114907_-\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	5.92405e-42
NZ_CP038513.1\|WP_171279704.1\|105425_106499_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP038513.1\|WP_011707358.1\|103377_104373_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP038513.1\|WP_011707369.1\|116527_117664_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	1.31458e-166
NZ_CP038513.1\|WP_171281187.1\|116098_116344_-\|cyd-operon-YbgE-family-protein	gnl\|CDD\|370577	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE). This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.	9.82435e-19
NZ_CP038513.1\|WP_171279699.1\|94760_95912_+\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.21013e-65
NZ_CP038513.1\|WP_017411114.1\|95991_96384_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	3.20681e-74
NZ_CP038513.1\|WP_011707370.1\|117676_119233_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NZ_CP038513.1\|WP_171279701.1\|98581_100759_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP038513.1\|WP_171279702.1\|100841_103031_-\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP038513.1\|WP_171279698.1\|94091_94535_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240034	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.33097e-52
NZ_CP038513.1\|WP_011707367.1\|115585_115993_-\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	5.78381e-54
NZ_CP038513.1\|WP_139750004.1\|106639_108745_+\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.68276e-64
NZ_CP038513.1\|WP_171279700.1\|96440_98582_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP038513.1\|WP_171279703.1\|104488_105355_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	1.7341e-120
NZ_CP038513.1\|WP_005304908.1\|111297_111822_-\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	3.5678e-77

>NZ_CP038513.1|WP_139750004.1|106639_108745_+|HAMP-domain-containing-protein
MKQRSLKTKLLLLTMGLFLASGLAMTLMQSSSLNTLRSNIVSQTRKALEQEVSRTLQFQAERYAVQIADLLQQSYQVPLGMAAQLEGSMAQPDRLLSRPQVETLLHSRLQQAGGISSIYAQFEPDGYDGQDASWQAGASHSVVGKGSLEIYFTRDQGGQISQQPVDAATSAAKYDTSVNEFGIRNSEWYLCGRDTLRPCLMEPYLYEISPGNKMLMTSLTVPVLKAGKFVGITGVDMNLPIFQQLAENLGKSLYDNQAEVTLISKMGLIVGSNRHADKLGRPLTEAGLTAPTGQEQDTETDFILQQPVRIDAADTQWWLMLKVPKALALSQANTISNQLGDLLQATQQQQLIAIVVITLLALALLIWFIQTITAPLSLISRHVSHLSSNEGDLTQQMRIDTHQELIELGGHLNAFLGKLRGMVQGSKQIGQQVHQQAQGMKQTADTMRSSLDEQSLELESVVSAMHQMSTTAVSVAGYAEQAAQESETATHHISTAQQTLSRARTEIHTLVEDMHLADKAVAQVAQRSTNISRILDVIRAIAEQTNLLALNAAIEAARAGDMGRGFAVVADEVRALANKTRESTDEIGQLIGSLQTEVNSSQQLMSTGITRSASTVEGTEQAFEALNQVVTQIQQIHDHISQVATAAEQQSAVSDTINQNLMRIGDAATTLGQEANASHHLSEQLEQAATALATQLERLRT
>NZ_CP038513.1|WP_171279704.1|105425_106499_-|quinolinate-synthase-NadA
MSNALNNVPPVVEMDYPFPAKPLPLSAEQKTTLIADIKALLKERKAVLVAHYYTDPEIQALAEETGGFVGDSLEMARFGRDHAAQTLIVAGVRFMGETSKILSPHKRVLMPTLEAECSLDLGCPIEQFSAFCNAHPDHIVVVYANTSAAVKARADWVVTSSIALEIVEHLDSQGHKIIWGPDRHLGAYIEKKTGAEMLRWQGHCIVHDEFKARALRELKEQNPDAAVLVHPESPASVIELADAVGSTSQLIKAAKELPQQKLIVATDRGIFYKMQQACPEKDMVEAPTGGDGATCRSCAHCPWMAMNGLVAIKEALTDGAERHEILVDEDLRVKALIPLDRMLNFAAELRLKTQGNA
>NZ_CP038513.1|WP_171279703.1|104488_105355_+|D-hexose-6-phosphate-mutarotase
MQPTRSLTAHCTLSHHPAGQPLLTVDNGYAKAEISLFGAHVLSYQRHDEPASIWLSDKAVLDGSKPIRGGIPLCWPWFGPAPARVGSGKPSHGFARTSLWTLDGVSDLGDGTLVHLSLRDNEATRQLWPHAFELELDVLVGKELALVLTTRNTGKAPLVYSGALHTYLQISSPESVSVSGLGEPYADKLTGQNGQQQGPLTLNGPLDRVYWQPAAHVSIQDGERETRVVSGNHDSVVVWTPWIEGATAMADMSDDGYRTMLCVEAAIASEAGVTVAPDEEHSFSTVII
>NZ_CP038513.1|WP_011707358.1|103377_104373_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVGINGFGRIGRFVFRLAAERSDIEVVGINDLIDVDYMAYMLKYDSTHGRFKGTVEVKDGNLVVNGKTVRVTAERDPANLKWGEIGVDVVAEATGLFLTDETARKHIAAGAKKVVLTGPSKDATPMFVMGVNDATYAGQDIVSNASCTTNCLAPIAKVLNDTFGIESGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGVVIPELKGLLTGMAFRVPTPDVSVVDLTVNLKKAATYAEICEAMKAASEGAMKGVLGYTEDEVVSTDFLGERQTSVFDAKAGIQLNDKFVKVVSWYDNEMGYSSKVLDLIAHISK
>NZ_CP038513.1|WP_171279702.1|100841_103031_-|4-alpha-glucanotransferase
MTTLIEQLAAAKGIASEYVDAWGHPAQVSEDSKAAMLGAMGYRVDDEAALTEQLEQEHRQHWLRALDPVMVVRSGEPITLEVRLPIEFVNDALSWQLKLEQGGLLSGQLTPIDGELVGVAEFEEMECQAYRVALAVQPELGYHDLILLEEGNDEPLASMRLIVAPKACYKQPPIANGRKVWGPSVQLYCLRSRHNWGIGDFSDLGQLVEKMAAWGAHFVGLNPIHALYPANPESASPYSPSSRRWLNVAYIDVEAVPEFLANARLKAEVANPAFQQHLSELRAKGNVDYTGVVETKLGMLRQVFDQASLSAERQAAFDAFVAAGGDSLQQQAAFDALQAHFYAKGENAWGWPVWPEPFRDYHNPEVAAWMAEHRQDVNFYLYLQFLADEQLARADARAKAAGMVMGIYRDLAVGVSEGSTEIWANRDLYCPKASVGAPPDILGPLGQNWGLPPMNPNQLFEAAYQPMVDLFRANMRSCGALRIDHVMALLRLWWVPPGESAAKGAYIYYPVNDLLGILALESHRNQCLLIGEDLGTVPEGIDVTLKENGVHSYKVFFFERSKADGGFISPAHYAEQAMSALTTHDMPTLKGFWHCDDLALGRELGLYPDEDVLKTLYADRHQAKQRILDSLHGHGVISGNISHDVNWVGMNTELNHGLQLHMSRGSCALFSTQLEDWLEMDKPVNVPGTSYEYPNWRRKLSTDLEDIFANEALKALAGKMSQARDEASR
>NZ_CP038513.1|WP_171279701.1|98581_100759_-|1,4-alpha-glucan-branching-protein-GlgB
MLVERLVAARCSDPFSHLGLQANPDGPGLKLTVWLPDAQAVRVRDLKSGKIVATLAPTDDSGLFETVFTRRKNPFPYQLLADYPDVTVEVIDPYQFQDAGWAGLAELTYQPENLYHTLGAQLRTVAHLDQQVEGVRFAVYAPSATAVSLIGDFNFWDGRRHPMQRSQCGHWVLFVPGLKAGDRYKFELKDPAGNRLPHKSDPVGFYCEQYPSFASVVYDHDQYQWQDAAWRESQLNDKREQPLSIYELHVGSWKRHPNGDSLSWRELAVELVDYVKRMEYTHIELLPVSEHPFSGSWGYQPVGMFSPTSRYGTADDFKYFVDQCHQAGIGVILDWVPAHFPSDAHGLARFDGTPLYEYEDPRRGWHPDWNSYIYDFGRNTVRQFLVASVLFWLDKFHVDGLRVDAVASMLYLDYSRNAGEWVPNVDGGNHNYEAISLLKWTNEEVYGKYPHAMTIAEESTAFAGVSRPTFLGGLGFGFKWNMGWMHDTLTYMQKEPIHRRYHHNDMTFSMVYHYDENFILSLSHDEVVHGKHSMLYKMPGDEWQQAANLRAYMGFMYAHPGKKLNFMGTEIAQSNEWNHDAQLPWHLLQYPKHGGQQRLIHDLNHLYRHEAALYQADYEQNGFRWLDHNDADNSIFAWLRADKQGANPLVVACNFTPVPRLAYRLGVPAAGHYRVVLNTDSEHYWGSNYDVGLVFVAESTPWQGMAHSIVLDLPPLATLFIKQES
>NZ_CP038513.1|WP_171279700.1|96440_98582_-|glycogen-debranching-protein-GlgX
MFAMEKGQDHPLGALLDETGCHFCVWAPQSDKVELCLFDEQERELARLELPGRRGQYRFGHVRGVKAGQRYGYRVHGTLQEGMLFDPDKLLIDPYAKALSRPTHWDDALYQGDSAAMVAKSVVVDDAFDWQGVGKPAIEPARTVIYETHVKGFTRQHQGVPSELRGTYLGICHPLIIEHLKSLGITSVQLMPVAAFMSEPRLEQLGLTNYWGYNPIAFFAPEPRYAAQEAVTEFKTMVRELHRAGLEVILDVVYNHTAESGFDGPMLSFKGFDNAGYYAFEAGAHGPDYTRHANVTGCGNSVNLDHPNSLRLVLDALRYWVTEMQVDGFRFDLAVTLAREAGEFDPMGAFFKAMMADPVLARVKLIAEPWDIGPFGYRLGQFPSQWLEINDRYRDTVRAFWRGDAGKMGDFATRLVGSRDLFPKNWRSPHTSVNYLCYHDGFTLEDLVSYNQRHNQANGEDNRDGHGNNLSNNHGVEGPTLDPRVNNLRQQQKRNLIATLLLSQGTPHFLAGDEMGRSQLGNNNAYCQDNQISWVNWQWRPEDERLLAFTQQMLALRAESTVFSNLQLSDDSWNGAPSSCHQVNWYHPDGHQLTDQDWHAPMGQAFAMDIGMIGCGGERWYVLFNASDYDIQFRLPPPGEGLEWIQTIDTATNDGLPFLPDDIKRQVAVGRAHSLKLLERVALSAVALAEEGVVATPDVAVVLPSGSQFPLAG
>NZ_CP038513.1|WP_017411114.1|95991_96384_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSGNTPNPEQWRRQLSAEQYHVCWEKGTERPYSGALLHNRKSGDYLCVCCKQVLFHSDAKFDSGCGWPSFDRAIEGTVTYTEDGSHGMKRVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLDFDPEP
>NZ_CP038513.1|WP_171279699.1|94760_95912_+|chromate-efflux-transporter
MGQVFIQFLWLGCVSFGGPAAHIGYFQRTFVERLGWLTQAEFAQLLALCQLLPGPASSQLGFAIGRQRAGLGGALAAFAGFTLPSFLLLLAAAIGLGQLGNNVWLDATLHGLKLLALVVVADAVLTMSRQFCKTTRNQGIMVATAAALWWQPGLLTQLVMLAGAALLCARVGEPQTPGPQPSPAQSIPVHQPHWPTLLLFALLFVGLPLLGGPVGQLVADFYRAGSLVFGGGHVVLPLLAESVGHSLNQQQFLTGYSLAQLVPGPMFTLATYLGAQLLPATPVGGALLATLALFLPGFLLLWAMGPCWQSWLARPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPTDQALAAVGFYLLRGLKLPILALATLLVVATLLLA
>NZ_CP038513.1|WP_171279698.1|94091_94535_+|NUDIX-domain-containing-protein
MSTPYPRVGVGVILTNRQGQVLLGKRKGSHAPYWSIAGGHLELGETFESAAIREVAEETGFQISNPSVIAVTNNLETWRESGLHYVSVTLLAEVEGEPQLLEPEKCEGWVWCDPRNLPEPHFDASRQSIACWLAGRCYLPTPHQPTS
>NZ_CP038513.1|WP_005304908.1|111297_111822_-|peptidoglycan-associated-lipoprotein-Pal
MQLNKLLKGLAIALPLFTLAACSSSSDSDAAGAESGMTDGMGGVQTGGANGMLSPEEQMRQKFEALQRDNVIYFPFDGYDIQGQYADLLDAHASYLRERPSVKVLIEGHADERGTPEYNIALGERRAKAVAKYLQTLGVQAEQLSIVSYGEEKPLDMSHTEDAFAKNRRAVLVY
>NZ_CP038513.1|WP_011707363.1|111871_113197_-|Tol-Pal-system-protein-TolB
MIRKVFFALVGCLLLGQSAQAALDIVITGGIDSARPIAVAPFKWEGNGQLPQDIAEVVSNDLMRSGKFKPLARGQMPQTPSTSGEINFAPWASQGVEAVVVGSIAAVGDGTYKINFELVDVLKGQLAKAQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRIADYDGYNEKTLLRSREPLMSPAWSPDGSKLAYVSFENQKSEIYVQDIYTQQRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLTRVTTSRVIDTEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASITPDGKIMVMVTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDGRFKAVLPTSSGEIRAPAWSPFLN
>NZ_CP038513.1|WP_011707364.1|113291_114455_-|cell-envelope-integrity-protein-TolA
MDVKRGISGYLIASLLLHLIIGIILFVGLDFSKPKRPESKGQIVNAVMLDENFLNEQAKQIQQQKSQPKPQKVEKEKDKEDTDIAKRELAQQQERLRIAETKRKEAEEATRKAEAEKQKKVAEQKQAEEKAQKAEEARKLEEQKAKKVEAERKAAEEESKALALKKKKEQEKKEAEEKQAKADAAKKAEAEKKAKQEAEKKAKAEADKKAKAEAEKKAKAEADKKAKEAKEEAAKKAKADAEKKAKAEADKQAKIAAERKRKAAEEAKLQKEMEDMMQQQLAAEANARSQAASAAAQGEVDKYAALIKATVERYMILDPTMRGKTCTIGVRLASTGFVISVDNGQGDPAVCRSGKAAVLKANQLPVPKDPAAFEMLKEFNLKLEPSI
>NZ_CP038513.1|WP_011707365.1|114460_114907_-|protein-TolR
MQTYQRIRRKKVAEINVVPYIDVMLVLLIIFMAVTPVITQGVKVDLPQAESEQLPEDAKPPFIVSVNTEGEYVIKAGEADDEPVPAGTPEAMQQYITEKAMGYLAINQNAPVVVAGDKSVRYEEVILLMVALKKAGVPQVGLMTDPVN
>NZ_CP038513.1|WP_011707366.1|114906_115596_-|protein-TolQ
MHAEISFIGLFWQASLLVKLVMMTLMGMSVVSWALIIQRSKAIKAANLASEQFEDRFWSGVDLNRLYQESSSRRDDIEGMEDIFYSGFKEYARLLKAGARGQDAVMDGTYRAMRVSLSRAVDELESNLPVLATIGSISPYIGLFGTVWGIMNAFIALGQVQQATLQMVAPGIAEALIATAMGLFAAIPAVIFYNRFSNKVERLENAYANFMDEFTTILNRQIAQQQGDQ
>NZ_CP038513.1|WP_011707367.1|115585_115993_-|tol-pal-system-associated-acyl-CoA-thioesterase
MGEVSEFPVRVYYEDTDAGGIVYNANYLKFMERARTEFLRCGGIEQDVMLRDGFAFVVSRTEIDFRSAARFNELLTVLTQVTEVKRASMRFSQRILAADGRLITQAMVQIACVSHPHMKPVAIPENVKGVLLSAR
>NZ_CP038513.1|WP_171281187.1|116098_116344_-|cyd-operon-YbgE-family-protein
MLLAAALLAVAILQAPNLVAANTSEHELWLAPWLMWAVCCGVMHGLGFHPRSLIGRVLFCPWLAWPSLLYGLWLTQGYFLS
>NZ_CP038513.1|WP_005304933.1|116396_116513_-|cytochrome-bd-I-oxidase-subunit-CydX
MWYFTWILGLLLACAFGIINALWLEHTENMDRQIDENK
>NZ_CP038513.1|WP_011707369.1|116527_117664_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MFDYEMLRLVWWVLVGVLLIGFAITDGFDMGVGALLPFVGKKDVERRVMLNTMGPHWEGNQVWLVTAGGALFAAWPMVYAAAFSGFYIAMILTLMALFFRPVGFKYRSLREDAKWRSNWDWALFVGSAVPPIVFGVAFGNLLQGVPFDFNQFMMLTYHGNFFGLLNPFGLLAGLVSLFMLVTQGATWLMMKTDGEVLARSRTAAMICSLLTLVLFGLAGFWVSGMEGYVVVKAAATDAVSNPMNKEVVRQAGAWMNNYSLYPWMVAAPVLGLAMSLLTALFAKLNKGWLAFTTSSLAVAGVILTAGFSMFPFVMPSSLEPSLSLTMWDATASFNTLKVMTVAAAIFVPIVLGYTLWTYIKMFGRVTSKHIEDNQQSLY
>NZ_CP038513.1|WP_011707370.1|117676_119233_-|cytochrome-ubiquinol-oxidase-subunit-I
MIAEHVVDLSRFQFAATALYHFLFVPLTLGMAFILAIMESVYVMTNNPVYRDMTKFWGKLFGINFALGVTTGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRLSKRQHLAATWLMALGTNLSALWILVANGWMQNPVGAEFNFESMRMEMVSFAELVFNPVAQVKFVHTVAAGYTTGAMFVLGISSYYLLKNRDVAFARRSFAIAAAFGMASILSVLILGDESGYETGEVQKVKLAAIEAEWNTEPAPASFTLFGIPNQEEMRTDYAIKIPYALGIIATRSLDGQVTGLKDLKSEHELRVRNGMTAYDLLTKLQSGDKSDDTRARFDEVKQDLGYGLLLKRYTNNVTDATDEQIKAAVDDSIPQVAPLFFAFRIMVACGMLMLLLIGLAFYDSTRHKIGERKWLLKALLYGIPLPWIAIECGWFVAEYGRQPWTIAEVLPTSVSASNVPASEIWFSLIGICLFYTVLLIIEMYLMFKYARLGPSSLKTGKYHFEQSKA

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Crispr_ID: NZ_CP038513_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_4

172082-172158

Orphan

Consensus_repeat	Method
GTCAGATCGCCGCGACACCAATCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_4

>merge|NZ_CP038513|4|172082-172158|CRISPRCasFinder
GTCAGATCGCCGCGACACCAATCGGAGCTCTTCCCTGGACAAGTCCAGCCAGTCAGATCGCCGCGACACCAAGCGGA

>NZ_CP038513|4|4|172082-172158|CRISPRCasFinder
GTCAGATCGCCGCGACACCAATCGGA	GCTCTTCCCTGGACAAGTCCAGCCA
GTCAGATCGCCGCGACACCAAGCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_011707413.1\|161718_162492_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NZ_CP038513.1\|WP_171279721.1\|166487_167840_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP038513.1\|WP_171279726.1\|176383_177130_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279720.1\|166080_166263_-\|DUF5363-family-protein	unknown	unknown	gnl\|CDD\|375128
NZ_CP038513.1\|WP_171279718.1\|164665_165454_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NZ_CP038513.1\|WP_171279719.1\|165494_166112_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP038513.1\|WP_171279725.1\|172869_175281_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_011707414.1\|163177_164452_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP038513.1\|WP_171281188.1\|183518_183908_-\|terminase	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279727.1\|177518_179723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_130632757.1\|180723_180939_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279730.1\|184914_186714_-\|DNA-primase	unknown	unknown	gnl\|CDD\|225913
NZ_CP038513.1\|WP_016351995.1\|168174_169611_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|182630
NZ_CP038513.1\|WP_171279722.1\|171022_171322_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279729.1\|181001_183155_-\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP038513.1\|WP_005305103.1\|162883_163054_-\|DUF1427-family-protein	unknown	unknown	gnl\|CDD\|274620
NZ_CP038513.1\|WP_171279728.1\|179923_180481_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP038513.1\|WP_024946432.1\|186721_186955_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279723.1\|171523_172072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_162791266.1\|187041_187188_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_011707413.1\|161718_162492_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	2.08358e-178
NZ_CP038513.1\|WP_171279721.1\|166487_167840_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.29539e-150
NZ_CP038513.1\|WP_171279729.1\|181001_183155_-\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	0.00176808
NZ_CP038513.1\|WP_171279720.1\|166080_166263_-\|DUF5363-family-protein	gnl\|CDD\|375128	pfam17320, DUF5363, Family of unknown function (DUF5363). This is a family of unknown function found in Gammaproteobacteri.	0.00485826
NZ_CP038513.1\|WP_016351995.1\|168174_169611_-\|ammonium-transporter	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	0
NZ_CP038513.1\|WP_171279718.1\|164665_165454_-\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	2.58414e-94
NZ_CP038513.1\|WP_005305103.1\|162883_163054_-\|DUF1427-family-protein	gnl\|CDD\|274620	TIGR03510, conserved_hypothetical_protein, XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins. [Unknown function, General].	1.62751e-10
NZ_CP038513.1\|WP_011707414.1\|163177_164452_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	0
NZ_CP038513.1\|WP_171279728.1\|179923_180481_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.83979e-50
NZ_CP038513.1\|WP_171279719.1\|165494_166112_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	2.85705e-09
NZ_CP038513.1\|WP_171279730.1\|184914_186714_-\|DNA-primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	9.61286e-79

>NZ_CP038513.1|WP_171279723.1|171523_172072_-|hypothetical-protein
MLAMKAKTVFTFFLTAIQAAYSAEGPEDPPPPSPLCVVLTEALSTHPSYQNSPSHAVESNQVCTVSDGAKTWRCELLFRDSCNNVIRGSSDDPGKVFSAALRTAEECFPDRVRRNTELVENNSELRRRILRDAHFGYPEERMPTLTVSADAIQYLGKDRQCETINIELRFEEAPLPPARSLH
>NZ_CP038513.1|WP_171279722.1|171022_171322_-|hypothetical-protein
MASTAVLLLDFGKQLSITLHDSHIWEVSGDPKGVLAVEGGDWSFAPTVGTQLIAEGQVEIVFVGWKLADVTPGANNGGTAYLFPETANTLGNFKVTLAV
>NZ_CP038513.1|WP_016351995.1|168174_169611_-|ammonium-transporter
MLKRLVMTGLLALAALLAAPSWAEEVVAASAEVVQAAAPAVVTINKGDNTWMLLSAALVILMSIPGLALFYGGLVRSKNMLSVLMQVFTLFSLICVLWILYGYSLAFTEGNSVYGSFSKALLKGVTPDSIAATFSKGVGISEFIYVVFQGAFAAITCGLIVGAFAERIKFAAVLLFSVIWFTFAYIPLAHMVWYWAGPDAYTTADAAAAATATAGYLFQHGALDFAGGTVVHINAAVAGLVGAYLVGKRLGYGRDPMTPHSLTMTMIGASLLWFGWFGFNAGSALEANGTAALAFINTWVAPAAAALSWTLAEWVMKGRPSLLGAASGAVSGLVVITPAAGFVGVGGGLVMGLISGVAGLWGVHGLKRLLGADDSLDVFGVHGVCGILGALLTGVFASPDLGGTGVWDYVTNQVAEGYSILAQVKIQAIGVGVTILWSGIISVVAYKLVDLLIGLRVKEDAEREGLDVTTHGEKAYSL
>NZ_CP038513.1|WP_171279721.1|166487_167840_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MPLVGHQHQIEILELTDKGDGKGRLFDRPLFVEGLLPGEQALVELTEVKPNYLHGKVAELLQPSADRVADFCPNTECGGCQVRPLAYLAQLKLKQALVESALEQAGLGDTTVRTILGMDSPFAYRNKAQYAVRGCDAGAEIGFYRKHSHDLITADDCAVQDSLHVELNARVRSWMREHDIAAYDEVNHSGCVRNLMTRKGFKSGELMVVLVTLGEELPFEAELLTALSDLPVTTLVQNINEERTNRILGATNRVLLGEGVIRDKIHELEFEISPLSFFQNNPSQTDVLYSSALEYAELTGNETVFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQLMPELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFVLDEVQPVDMFPHSMHVEAVARLSLPAKA
>NZ_CP038513.1|WP_171279720.1|166080_166263_-|DUF5363-family-protein
MKGILLRWLARYDGWCEEWGFTPENRRCCVPVRSEQDDAPQTEQQGESQSLTRNCGSRHQ
>NZ_CP038513.1|WP_171279719.1|165494_166112_+|type-II-secretion-system-protein
MMKRTSHGFTLIELVLVIIVLGILAVTALPRFINLKDDALKSTVATIATSFASAVQLAHAGWAVKAQDQALYNLGSMGQRNLDINRYGWPAGTDEDQGRKGIDEPYVAGQGDYISVSNQSDCRLLFQGLLDSSYTVASVDQDPEIQLNADYLSSELPANQVDADGEPHSNCRYTLRDSIGRFPAYPAGLSFDYNSITGAVTRNFE
>NZ_CP038513.1|WP_171279718.1|164665_165454_-|TatD-family-hydrolase
MQLIDTHCHLDFPVFDPDRAALLAECRQLGVSEYIIPAVGEENWGRVMALAAEHDGISYALGVHPWYVGGQTPAVLTRLRRLLAERPGGLVAVGECGLDLRSHVPQEGQLEMFEAQIKLAMEHELPLIVHSVRANDTVAKILRRQRPARGGVIHAFSGSLQQAEAFWQLGFRLGIGGVISFERANKTREAVRDMPLESLLLETDAPDMPLQGQQGAPNTPANLPKIAQLLADLRQQPLAHVASVLRESTLQAFQLGKSQINS
>NZ_CP038513.1|WP_011707414.1|163177_164452_-|NupC/NupG-family-nucleoside-CNT-transporter
MNLIMGLVGMATLVLIAVLFSSNRKAIKIRTVVGAFAIQAGLGAFVLYVPVGRDILVGVSDAVSSVIGYGQNGIEFLFGGLVSNKMFEVFGGGGFIFAFRVLPVIIFFSSLIAVLYYLGIMQWVIKLLGGGLQKVLGTSRTESLSATANIFVGQTEAPLVVRPFISKMTDSELFAVMCGGLASVAGSVLAGYASMGVKMEYLIAASFMAAPGGLLFAKLLVPETETPSYDENNADGELEDKPANVIDAAAAGASAGLQLALNVGAMLLAFIGLIAMINGIFSGVGGWFGYPQLSLELLLGWIFSPLAFLIGVPWSEAIVAGSFIGQKLVVNEFVAYLNFAPYLKDEVLINGVAMSDHTKAIISFALCGFANLSSVAILLGGLGSMAPNRRGTIAKFGLKAVLAGSLSNLMSATIAGFFLALSGM
>NZ_CP038513.1|WP_005305103.1|162883_163054_-|DUF1427-family-protein
MNEVLLAMAAGFIVGLLFSFLKLPIPAPPVLSGVMGIVGVYLGGLAYSWILTRFFS
>NZ_CP038513.1|WP_011707413.1|161718_162492_-|deoxyribose-phosphate-aldolase
MTDLKLAAQRALNLMDLTTLNDDDTDQKVIDLCRKAKSPAGLTAAVCIYPRFIPIARKTLREIGAADVRIATVTNFPHGNDDIEIAVAETRAAVAYGADEVDVVFPYRAFMAGNEQVGFDLVKACKEACGSQALLKVIIETGELKEEALIRRASEISIDAGADFIKTSTGKVPVNATPEAARIMMEVIKAKNPKVGFKPAGGVKDAAVAGQYLAMAEEILGKDWVSARTFRFGASSLLASLLATLGHGDKPANTSGY
>NZ_CP038513.1|WP_171279725.1|172869_175281_-|hypothetical-protein
MTNIKSLCRHTVSLLCAILFLSIELPAVHAGEVIDENQVLVPGKDWMLSDRQAWDQAAGSLRGQDLHAWVEDHPNRFFEAAIQNTLALRPGEYATVRQRHSYYDYLAYYMEYSQAAPSTLKDVRFFAATTSVTIRGELGLIEGLIAAKSDKLAELLDSTLPTAANFLKITADSARTLSSINERLFQKNMRVLRDLLQTWKAPRDPRVASPRNVLTAFDFDMAMVDFEQSEVQAFLDTTSVSVARITNINRLMTLQKDFLPGLSLVSTLNSWAEKAGFKRVDFGDKGWRVALGRAIVFRFNNKTEGEYLAYMKAHPVAKQPRAALYDGMQAPLRYTADVTGSFTVLGSWRTEGGAKRHLAKLRSDNPGLQASVYPPYGSDRYWTVMGATFSANDTAAELAKVARNKGVAHDAYVIKRKAVDAKGNKQAPVAGAAELGASSRLLDPLPTTHDALHNHFLSVLKTSSLDEARTAYADWRIRFPDLQVGLYKVGMPEEYLIALAAFVSETEVELARQMARKVGVATEDINTWTLQGGSVERLNEKGTVATDGWEKVKECYQSGSITAAALHQCSGQWLTPTILTRCIIQNDCDGLGDKLLPTMDRVRAFYASQGLNFDDGLLELKILTEAVPLSTNGNAFVNGMINCKNTSGGNKDAYQKCLSTEVLPDAQVNLKSLECLQASNSNEQALQCVSQAGALPSMAGKIECFSEDGMGPTETARCLMSDSDKQALEKAKKCLSGASSERAALTKCFGALLPTEARQAADCVAGNADSPRNVISCFTGDNPTARKAAQAFDCATQKDISSQ
>NZ_CP038513.1|WP_171279726.1|176383_177130_+|hypothetical-protein
MRIPAQASVANIERALREAAVAPKNEPFILPSNLRHFGCGGEAALNQLLVTWAQPRPPVTLKTYVETPEQIGELVRRLPGLTGALCAGVVMGGGEIGDLTYQVREAALARLTTLLSAKPKAAYRGSSVEVICADHLGRNAPYLLYKSDSGQAPQLRPRHSFASLASWLLRQTVPKAYQNRIAPQMPDALGGMIFELFKNTEEHGQFDAFGNILSMSIRAIKTVHHAIKPETLAQIVADYPPSLIIASR
>NZ_CP038513.1|WP_171279727.1|177518_179723_+|hypothetical-protein
MKSLFSLRFDLHRSNEAAEARTRDTLMVFVAEPELDPEEFASMMEAEIETNLVPDEVAIIVRDPSFDDTLEMLTSHSLHHSTLGRLGHSTVTLIGYDWNGLESRRHSVAGTMPTTGMTIDDVRRRGITFIFNERQGFVEANATYHFENPSGRHTERFIRLSNILARGAEIAFIGFCCLPHIDPTVARAYLDTPALYAIVAAINEQRRSFEGARWILADNFSSYAGFDQYEFDIDDNAVVLISASSSGSLAARLIDEKNAEPTRIVHLLYLGQNPSTTPVVCDLLREAQVNPAGFTTLPSANESVDCPMCKGGSHAIKLRGDQFEFAGPQQDALLVGLADAPKGLSALMDRYACAEVFQVGLGRSGSKSPRLFHVNADKLLESADFGKKLDYALRRSLPARLSHVIAADQQSQALATRVAAHLATPALVIARDNIDDIPAKTSEAIVIVASVIESGRTLLDISRDLRSISPDAPLMYLVGMAKTTGEPKRERLENSLIQTHNFFPYQFLTVDQIVLPASYDNHAWAAELQLLIDLEIKILVPEQLLPVVESRINRLRLASQPMGDDLFLANAQQQLCLQPGFVFWPKSLPEKPGHRQADVYFTISSVLQRLRANAFVPSERRIISNWFQQTLLAPGNFGRFNDDVIQASLLRAAYPYELNFADTVAESREMGRLIRRVILASQSPRGGAASEFLLALATRRLQLCKDDVDYVLETEAPDIPMIRFLLESCRHRLS
>NZ_CP038513.1|WP_171279728.1|179923_180481_-|recombinase-family-protein
MAVIGYLRVSTGEQSVGAQRHSIEQTHNVETWFTDEGVSGGVKALQRPGFAELFKFIRKGDTLIVPAVDRLGRNTIDVLNTVEALQGKGVSIISLREGFDLSTPIGKAMLTMLAAVAELERSNIKLRQMAGIAKAKAEGKALGREKTIDDAAVAIWRKENTASIKLTAEHFGISPASVKRACRSA
>NZ_CP038513.1|WP_130632757.1|180723_180939_+|hypothetical-protein
MGNDNDDLIDDFGDEDEIEETLEEEAEREYWENHDSLDSEYDRPDPEEEQRREEYRREHGGGFMNERWNPY
>NZ_CP038513.1|WP_171279729.1|181001_183155_-|NERD-domain-containing-protein
MNGQARQCQDFYQTLFAGYAQQLAPFAALDECLHDFLDQRPSGKYTTRNRAAGLAAASFWWEPVNLEGAQLASLALGRILHFEDAISTALLNHLAARHPDVLRWAIRYSKLFTRSDSPLWRHLRDNLGSGDWYEFFGVCDRLLEQLEPFDEAIALAETHLKSLSLLELLSYLSVIAYGQLGASQGKDSSAEDWDVYDRLIARKLSNCSECDFQLTEETLGRSIKRHLSPILFPQSGLGRENVANLESVALLTVAMRERIDYENSINWFCFDNDCGYQLKPGQPVIFNKTDTGSQRWQRTGRKSKLLWHYWMYRAIDQFAASDKAGKIIGRPENHESNQLAYIKTIRSQLYLQTIFGLGERVRLNDGAEVALHHAILASELTTVFFEQAFLQPFLRYMGDFGVAAKALGQLALEGLVQGENRFPITWSEPKDKIHRICGWAVSPEHPKGDPEAAEAILKFWTSDLQALSVQMRQTPNMPFPRMYERPFYKIGRYSFQFPWVAGQQNNLTATVNNLRRVEQRRPALRSETERIEHTLAEALRQRGFRVVVGSQPPLSDERDAGEVDLICHLDGVVLLLEVKSGFIRSTRHEVWLHRTNTLRKAARQLKRKQPVVLQALQNDQGLRSDLLLSDVNPLLTLHAWVVDTSIEFDGEIVDGFHVVSREIMEIALRDEPHYLRVFEEMDEAEVGNEEETLYADGFSAQALVRLIESDGVWCDLL
>NZ_CP038513.1|WP_171281188.1|183518_183908_-|terminase
MLARPGMPSKSMVMRWLADERYIEFRDQYACAREDLADKLADEILQIADDSSNDTFLDANETVKVNHDVIARARLQIDARKWLASKLAPKKYGDGGARENSGLSHGSMQVKSTVTFVHPPNCDEDSEVD
>NZ_CP038513.1|WP_171279730.1|184914_186714_-|DNA-primase
MTNPIATDAPADLPSDVVQNVVQTGKKAWPRTPSGELDIDRLERRADGSNGVNYNAYVSHEDGVHIAIAVRDAEQARRDAAMDQMEATPRKSLSGKPSAEVVAMARQIGAEIRGMDGEAILARASGEVIQMPTFNPPVRPASAPLGELDPEVLSKMPPSRLGRLLANLLGTPAVCRESGIVYRYEDGVWQPVPDAKLTPKLAKVFDSVDCAYSARKLRGAVETMKDGLPDMGLPSMGLIGFANGVYDLKSASFRPHSPDHFLPSHNGIAYGEPVAGENLKQHAPSFNRWLTHAAGGDVEKMDRIKAALFMVLANRYDWQMFLEVTGEGGSGKSVMANLCELLVGKDNVGPTSMEAMRGSFGLENVWDKRLILLTDQSQYIGDGALLKAITGGDEVAINRKGLAMFGAKVRAVVIATNNEPMKMTERNGGISRRRVIFAFNNVVADADRDPQLGGRIAAELPVIIRHLLAQFADPEQARQLLLEPRDGAEALAVKQEADPVIAMCAQLEFLNETTGLRVGGGNGVHDPVRFLYHFYLEYLKAEGLDRPLHRTAFGKAMKAAAKAYGEEYQTRKSNGDRVTNVKLKDEARSVLPQTRLLDD
>NZ_CP038513.1|WP_024946432.1|186721_186955_-|hypothetical-protein
MTNSELISMTQNLDNWVPMSQLPNIYKQFGYSTLKTLFWKRADRPGLERCSRLVGKRLYVNVPLFGLWLAGQLPEQQ
>NZ_CP038513.1|WP_162791266.1|187041_187188_+|hypothetical-protein
MKNGFFPTYPEVDIDCEMHNGEEAQATALQVKHPVRWGSVDLQQQQQT

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Crispr_ID: NZ_CP038513_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_5

227919-228069

Orphan

Consensus_repeat	Method
TACTGCTTGCGGCTCAGGATATAGAAGGAAATACCGCCAAACAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_5

>merge|NZ_CP038513|5|227919-228069|CRISPRCasFinder
TACTGCTTGCGGCTCAGGATATAGAAGGAAATACCGCCAAACAGCAGTGATGCAGGAGCGATGGCCGCGCCTTTTGTCAGCAGCGCCACTGCCCTTCAGGCCGCTACTGCTTGCGGCTCAGGATATAGAAGGAGATACCGCCAAACAGCAG

>NZ_CP038513|5|5|227919-228069|CRISPRCasFinder
TACTGCTTGCGGCTCAGGATATAGAAGGAAATACCGCCAAACAGCAG	TGATGCAGGAGCGATGGCCGCGCCTTTTGTCAGCAGCGCCACTGCCCTTCAGGCCGC
TACTGCTTGCGGCTCAGGATATAGAAGGAGATACCGCCAAACAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_011707427.1\|237749_238577_+\|D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|236952
NZ_CP038513.1\|WP_024945613.1\|241358_243983_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP038513.1\|WP_171279762.1\|232594_235447_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP038513.1\|WP_016352045.1\|236944_237610_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP038513.1\|WP_168755755.1\|232073_232529_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|377329
NZ_CP038513.1\|WP_171281190.1\|223611_224181_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_011707422.1\|230402_231911_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP038513.1\|WP_171279755.1\|216059_216323_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371317
NZ_CP038513.1\|WP_171279759.1\|224177_224738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279757.1\|218603_219791_+\|baseplate-J/gp47-family-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP038513.1\|WP_005305138.1\|229117_230230_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_CP038513.1\|WP_171279760.1\|224734_226345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_011707428.1\|240094_241342_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP038513.1\|WP_171279756.1\|216514_218284_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|378413
NZ_CP038513.1\|WP_171279754.1\|215492_215936_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279761.1\|227336_227858_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP038513.1\|WP_005305164.1\|239812_240001_-\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NZ_CP038513.1\|WP_171279758.1\|219783_220464_+\|phage-tail-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_016352032.1\|218283_218607_+\|DUF2590-family-protein	unknown	unknown	gnl\|CDD\|371228
NZ_CP038513.1\|WP_171279763.1\|235633_236926_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_011707427.1\|237749_238577_+\|D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|236952	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.	1.24564e-114
NZ_CP038513.1\|WP_024945613.1\|241358_243983_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP038513.1\|WP_016352045.1\|236944_237610_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.34471e-27
NZ_CP038513.1\|WP_168755755.1\|232073_232529_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|377329	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.	6.4686e-45
NZ_CP038513.1\|WP_011707428.1\|240094_241342_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP038513.1\|WP_011707422.1\|230402_231911_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP038513.1\|WP_171279755.1\|216059_216323_+\|hypothetical-protein	gnl\|CDD\|371317	pfam10963, Phage_TAC_10, Phage tail assembly chaperone. This is a family of phage tail assembly chaperone proteins.	2.83284e-34
NZ_CP038513.1\|WP_171279757.1\|218603_219791_+\|baseplate-J/gp47-family-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	2.16954e-17
NZ_CP038513.1\|WP_005305138.1\|229117_230230_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	1.20836e-124
NZ_CP038513.1\|WP_171279756.1\|216514_218284_+\|phage-tail-tape-measure-protein	gnl\|CDD\|378413	pfam10145, PhageMin_Tail, Phage-related minor tail protein. Members of this family are found in putative phage tail tape measure proteins.	1.43737e-24
NZ_CP038513.1\|WP_171279761.1\|227336_227858_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	8.87124e-14
NZ_CP038513.1\|WP_005305164.1\|239812_240001_-\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	1.40288e-34
NZ_CP038513.1\|WP_171279762.1\|232594_235447_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP038513.1\|WP_016352032.1\|218283_218607_+\|DUF2590-family-protein	gnl\|CDD\|371228	pfam10761, DUF2590, Protein of unknown function (DUF2590). This family of proteins has no known function.	5.44375e-44
NZ_CP038513.1\|WP_171279763.1\|235633_236926_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	2.21323e-125

>NZ_CP038513.1|WP_171279761.1|227336_227858_+|RDD-family-protein
MAKRKSVQPTPTPPATARYPSAGLLRRLGALLYDYLVVISLLIIAGFIGMGVAHLLLATGMATVPEGKDAAWLLTSPIYSAWLAFVICGFYTWFWTRAGQTIGMRAWRLRIQNADGSNIRITQALIRLATAAFGLGNLLCLFNHKSPRAFQDIWSECEVVVLGKQENLEQLNR
>NZ_CP038513.1|WP_171279760.1|224734_226345_+|hypothetical-protein
MKLATNMTVGGEQRHLVDHDMVLDLSVGGRASMTIEGAASKGQVMTVDIGYNSQLRRWFTGYVYDVQPAANGASKLMCRELAGVLGSRFPISIQHPTLRSVLAWLSEQTSLTFLLPDGVDYTDTQIPNFTSAGTGYQLLNNAGRAFSVPDFIWYQQPDGAIFVGSHAHSRWAGRPVELDPAFSARQAGNTITTAPIPAMRPGAIVNGQRVVRVRLKGDEMTLTTATPDKPVKSPERRKMEGEFPELADKMHLPKFGRVEAISDRAAAGQLNDPFRPRYAVDVQLLGEDGKPDEQAPLYRAVPLPVMFGGPEQGLLQFPVEGTLVELGFAFGRADRPFIRTILGTGWALPDIEPGEQLQQQRAEVFSRTDTVGNQTRHTDRRQHDKALRMIREADEYLGEFGQHQMTVLANSVEEIGAMKRIEALGDIELLTAEDMILGSAGNMSTTTGGNLEEDIALVRRALAGELQHFEAPKSWMGTEGTNIFRLLNQLMTVVEQLAATAASHNHGGPGPTNAETFTGQSQQAGQLAGTLAAIIE
>NZ_CP038513.1|WP_171279759.1|224177_224738_+|hypothetical-protein
MSRTAMLTLDGEPIVMKSMRISASMQFQDKDNSGQTSSTSSSEQGEKAKELDVSGLVPFNDEQTLNRLFELAAAKQDGGQRHIYRVGSLLAKGVKVRQAKFAGRITASEQEGLLAWQVQFTLREHNSVPEKREQRQPKPKVTVGQGAENASTANTPSTTATTEQEQLSSWERMVKGLDDKLGDVMA
>NZ_CP038513.1|WP_171281190.1|223611_224181_+|hypothetical-protein
MVAKLQDGADPHLPAGQLHAVAWMVTATSEQELAAKLAEVCAVLPLPEWCATLRRLTAENDLMAQPAAAMVPRWKADDTLIWDPLRRHMQVSAARDAMQQSEDNTPSPDSTRAKLAALTNKRTARIAELDAELATKPSLSGKLWSWHGYGDPASLAAQLQGSDHPDHSHAVGAMLLSTEPLTYWQELTQ
>NZ_CP038513.1|WP_171279758.1|219783_220464_+|phage-tail-protein
MTKTTELNHQDKAPQLPDSTAPWWEDGKTIADGVQEPAFLAKGIMAFWRRMRGWLLQPLAQQDPLTCSEAMLALLAWERDITRFKGEPLALFRKRVKFAFINAQDSGEVAGFKRIFERLGIGWCELHERQDGTPWDVITIEVADSALTQNQQLMETLIQHYGRTCRRYRFQVLYPAMGYLHAGRIDMGHQVFAATLNKPACKGYLRAGQIHFIQHVFGATLPRKES
>NZ_CP038513.1|WP_171279757.1|218603_219791_+|baseplate-J/gp47-family-protein
MNLRPTVDFMALLAKSGVPTTEEAMEVELKKEVEAAGSLITNDSDVSPFWRLVRAVVITPALWLIRILLAGHVLPASFAATATDSYLDLKAWDVDLTRKPAQKTRGIVNFTKVNPAEATTIPDDVWVTTERINGTIYRVKPVQAMVSPAGEAVARVVCEAEFAGVAWNLAPGYYNLLSKPITGILSARNSEKEWITTQGADAESNDALGLRIKNQFSAVGRYHIDAIYRSMLASVAGIRADHIFFEHDAPRGPGTANAFILLEVGTTPASLIEKLNDYVNNQGNHGHGDDLQVMAMPETEHSLHLELWPIENLAAEQRLALVNDVKLLIQAAFRQSADYPAVTRTWPQSRFSLSQLGRELHQAFPEIKSLHFTELDIVSGLTIPRLNALEVFLHD
>NZ_CP038513.1|WP_016352032.1|218283_218607_+|DUF2590-family-protein
MSDAKYIDIWVVDGAWQLDAGGQPRYTQDRHSIGQDIKHRIMESGLASKLIGERSPTLRADVMTEIELLVENDTRLIPGTIVISEEAPDRILVTARTYEFGDLEVTL
>NZ_CP038513.1|WP_171279756.1|216514_218284_+|phage-tail-tape-measure-protein
MAWMEKLMMQVALVDQVTKPLAGINAQMDKVSKAGRQGWSSMAMGATTVAAGGMAIQSALGPAIEMDRALGEVASLDVQKDVLGALGREALALSVKYGESATEIVRSSYDIQSAIAGLEGNELPAFTRASTTLAKATKADTATITNYMGTMYGIFEQQAKMMGKANWVEDLAGKTATAVQMFKTTGQGMADAFGAIGANATAAGISMDEQFAVLGQLQATMSGGEAGTKFKAFLAGVGGAQKALGLQFTDAAGNMLPVLTVLDKLKARYGETLSVAEGDELKKAFGSDEAVSMVKLLMTNTKGLATNINALANTHGMGKAEQMAAAMTDQWQRVEQAWFAIRAAAFGVVLPAINAVVGAFADGANDVLRWTHLFPNLTKLISYAALAIVGLSMVTGTWMLVAGIAKLATLGLGIAWSIIIAPLNLLKAGLVSFRAIMLAVNIAMYANPIGLIVAGIVLLIGAVAAVIYYWDDLKKTFSDWGVFQLLGKSIDWLIDKLNMIPGVNIEAGSMPDLNLPNPANINAPLARYREGGSSIPSGGLGQQLIQANAAATTANQKPAKVLHIGEVHMTSQNPMTPEQMAENAWLETP
>NZ_CP038513.1|WP_171279755.1|216059_216323_+|hypothetical-protein
MANPIITLEVAGKELKFAPTMVAYNGFLNGMMPTDKVAPAHNYLKKIVCQESKEALDELLKRPGAALQLAAAINQQFAPDLEITVKN
>NZ_CP038513.1|WP_171279754.1|215492_215936_+|hypothetical-protein
MNILKELFSNLLFVLVLALLVALFAGNKVLDQRTKALADANGTISTLQLANQQMAEEFRALSLQESGLRALLKHQNAALAELDQLNRKTADELQQALATPPEGRPNCASEPLPVGALRLLQPAHNRGANQGGQAASAAGAGTKLPGT
>NZ_CP038513.1|WP_005305138.1|229117_230230_-|LPS-export-ABC-transporter-permease-LptF
MTVIVFRYLFRETLKTQLAVLFVLLLIFVSQQFIQIIGDAADGEVPTRLVSTLLLLNLPNMALLMLPISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMVLALLTAAVAAFNTGWVAPQAKEREYQVIDEFKADPGISFLQAGRFMELDKGRLVAYIQDLNDKGSKLQKIFVLQRSQDGKPPSVVVATEGVVTVDSNGLQWLTLKDGSRYEGHFNTRQFQISEFDEYSLVIRQQEMERSNRKAAAKPTMELLGTQDNQLMAELQWRLSLPLSILVLTFLVVPLARVNPRQGRYAKLLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPLVYLLLIGLPLNLQGTSWWNGVKTLYFKRKSA
>NZ_CP038513.1|WP_011707422.1|230402_231911_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACVVVGVFEPRRLSPVAEQLDKISDGYISSLLRRGDLEGKPGQMLLLHQVPGVLSERVLLVGCGKERELDERQYKQIINKTITTLNETGSMEAVCFLTELHVKGRDTYWKVRQAVETTKAGLYSFDQFKTNKAEPRRPLRKLVFNVPTRRELTIGEKAIAHGLAVAKGVRVCRDVANMPPNVCNPAYLASQARRLADAFDNITTKVIGEQEMAELGMNSYLAVARGSDNEAMMAIIEYKGHPDAKPIVLVGKGLTFDSGGISIKPAEGMDEMKYDMGGAASVLGTMHALAQLQLPINVIGVLAGCENMPGGNAYRPGDILTSMSGQTIEVLNTDAEGRLVLCDALTYVDRFDPETVIDVATLTGACIIALGHHTTGLLANHNPLAHELLNASEQAGDRAWRLPLFDEYQEQLESPFADMANIGGRPAGTITAAAFLSRFTKKYNWAHLDIAGTAWKSGKEKGSTGRPVPLLTQFLLNRSGVVIEEKE
>NZ_CP038513.1|WP_168755755.1|232073_232529_+|DNA-polymerase-III-subunit-chi
MSQVTFYLMSEQDDAQASAVELLACQLVADSWGAGHLYLLCDDEAQALRLDELLWQLPPERFVPHQLQGESGQAPVEIGHQPPRRRYARLINLAKQTPLFAGHFAQVVDFVPTDETQKQQARERYKHYRQAGHALEMRDQPVLAAPDLAQP
>NZ_CP038513.1|WP_171279762.1|232594_235447_+|valine--tRNA-ligase
MEKTFNHNAIEQALYQHWEAQGYFKPHGDTSKDSFCIMIPPPNVTGSLHMGHAFQQTLMDTLIRYNRMQGKNTLWQAGTDHAGIATQMVVERKIAAEEGKTRHDYGRDAFIDKIWQWKEESGGTITRQMRRLGDSVDWERERFTMDEGLSAAVQEVFVRLYEDGLMYRGKRLVNWDPKLNTAISDLEVENREIKGHMWHLRYPLANGAKTAEGKDYLIVATTRPETMLGDTAVAVNPEDPRYKALIGQHIRLPLVNRLIPIVADEHADMEKGTGCVKITPAHDFNDNEVGKRHSLPMINIFTLDAHVRAEAEVVDTNGNPSTAYDAALPAEFAGLERFAARKAILAKLEELGLLDEIKDHVLQQPYGDRGGVPIEPMLTDQWYVRVAPMAKTAIEAVEDGRIQFVPKQYENMYFSWMRDIQDWCVSRQLWWGHRIPAWYDDAGNVYVGRSEDEVRAKHSIPSVTTLRQDEDVLDTWFSSALWTFSTLGWPNNTEALKTFHPTDVLMSGFDIIFFWIARMIMMTMHFIKDENGQPQVPFKTVYITGLIRDEEGQKMSKSKGNVLDPLDMIDGISLEDLLEKRTGNMMQPQMAEKIAKRTAKQFPEGIDAHGTDALRFTLAALASTGRDINWDMKRLDGYNNFCNKLWNASRYVLMNTEDQDCGFAGGEMQFSLADRWIQSQLQVAIRDFRTALDTYRFDIAAGVLYEFIWNQFCDWYLELTKPVLTKGSEAEQRAARHTLVTVLETLLRLAHPIIPFITETIWKSVAPLAGVHADTIMIQAFPEFDAAKVDEAAMADQEWVKEFIVSIRNIRAEMNVAPSVPLNVLLQCDAKDAQRAADNEAFLKSLARLESIRVLADGETAPLSVKKLIGATELMIPMAGLIDKDAELARLAKEVARLVGECGRIEGKLGNEAFVAKAPEAVIIKEREKLEDYRLQLTKLEAQQAEIAAL
>NZ_CP038513.1|WP_171279763.1|235633_236926_+|HlyC/CorC-family-transporter
MEILILFGLILLNGVFAMSEIAIVTARKARLSKMVSEGSRSAAIALKLSEDPTHFLSAVQIGITSIGLLNGIYGESLLAQPLALWLQEWGMAPKSSSLLATVLVIVVVTYLSIVIGELVPKRLGQLSAERIACLVARPMMWLAALTRPFVWLLSASTKASLRILRVSQDGGANVTQEEIHAMLVEGSEAGIIEDHEHTMLRNVFRLDERSLSSLMVPRSDIRYLDLALPLELNLQRLVEYRHSFFPVCDGSLSELVGIINVSKVLHAYIKGEPIDLAALTQDGSLLPETLNGLELLNHFRTHSEHMVLVVDEYGELQGLVTQQDLLETLAGDFQQEDGDDNWAFQRTDGSWLLDGLIPLPELKDCLGLVRLPEEEKHHYHTLGGLIMLLLGRVPQTGDLVTLEQWQLEIVDMDGLRIDKVLAMPLLDQPS
>NZ_CP038513.1|WP_016352045.1|236944_237610_+|DedA-family-protein
MEQFYQLAHAFMHQDLVTLSDPKMAFMVCGVLLTFLVLENGFIPTAFLPGDSLLILTGVLIYQDVLSLGVIPLLILATFVGTWLGYMQGRFLGHTQLYHRLLSHVEEKHQQKVYYLLDKYGIVTLITARYIAFVRTAYPYIVGATELPQGRFLIVNLVSSIMWICPLVGFGYFLSHTKLASEYQSQFLSIILCLPIVLLVGGLIALIWRWLSKRKASAPRD
>NZ_CP038513.1|WP_011707427.1|237749_238577_+|D-alanyl-D-alanine-endopeptidase
MRCRVSAMALVYALVGLLGLPAALAAPNPAKLQLQSSSALVMDVGTGKTLYQKNATRVRPIASITKLMTALVVLDARQDLGQTLTIDQNDRDAIKHTYSRVRMGTQVSRRDALHLALMSSENRMASALARHYPGGRPAFVRAMNNKAKQLGMRNSRFYDSTGLSTRNVSTAQDLAKLIAAAYRQPLIREFTQDTSKDMRFRTPAYSLMFNNTNPLVKNPDWDVRLSKTGFTDEAGRCLLMRAKPDNRELAIVLLNSVGKRTPVGDANRIRKWLKS
>NZ_CP038513.1|WP_005305164.1|239812_240001_-|carbon-storage-regulator-CsrA
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKVPGQSGF
>NZ_CP038513.1|WP_011707428.1|240094_241342_-|aspartate-kinase
MALYVQKYGGTSVGTLERIEAVAERVEQTRAQGHDVVVVVSAMSGETNRLLGMAQQLDPDANRREMDVLVSTGEQVTIALLAIALNKRGCPAVSMTGDQVRIHTDSAYGKARITHIDTEQVQAELGAGKVVVIAGFQGRDEHNAITTLGRGGSDTTAVAVAAAIKADECQIFTDVDGVYTTDPRIEPKARRLDTITFEEMLEMASLGAKVLQIRSVEFAGKYRVPLRVLSSFVDGEGTLITYGGERMEAPLVSGIAFNRNEASLTILGVPDRPTVAAQILNPISDANIDVDMIVQNTLGDGTADFTFTVNRDDYRRARALLEETASELGAACVQGNGEIAKVSIVGVGMWNHPGVARTMFKVLGEEGINMQLISTSEIKISVVIDEKYLELAVRALHSAFGLDQEPHEQPLGNNP
>NZ_CP038513.1|WP_024945613.1|241358_243983_-|alanine--tRNA-ligase
MYMSTSEIRTAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLPKERLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERISAIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSLRVIADHIRSCAFLVADGVMPSNEGRGYVLRRIIRRAVRHGRKLGATEVFFYKLAAELAAQMKDVAAELIAQLPLVERVLRIEEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREIGIDEEGFKAEMEKQRARAKEASSFGVNYNEMLKLDFETPFTGYKTLTERTRVVGIYKGVDEVSGLIAGDEAVIVLEQTPFYAESGGQIGDSGTLKVDDGIFAVTDTVKAGKAIIHKGYMELGTLEKGAEVEAVVDGERRQAIALNHSVTHLLHAALRQALGEHVTQKGSLVGAERMRFDFSHFEGMTMATIRRVEELVNNQIRANHEITTQLMDLEAAKSAGAMALFGEKYEDDVRVVRMGDYSTELCGGTHAKRTGDIGFFKIIAESGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQVLDKAKMMERELEQLKAKLAAQAGNDLLGQVIEIKGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLLATSGEGKVNLIAGVTNDLTGKVKAGELVNLVAQQVGGKGGGRPDMAQAGGTQPEAVPAALQSVHSWLEERL

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Crispr_ID: NZ_CP038513_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_6

799273-799349

Orphan

Consensus_repeat	Method
ATGATGGCCTTCAGCATGGCAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_6

>merge|NZ_CP038513|6|799273-799349|CRISPRCasFinder
ATGATGGCCTTCAGCATGGCAACGCCTCGCGAGTCAGACACTTAACTTCCTCAATGATGGCCTTCAGCATGGCATCG

>NZ_CP038513|6|6|799273-799349|CRISPRCasFinder
ATGATGGCCTTCAGCATGGCAACG	CCTCGCGAGTCAGACACTTAACTTCCTCA
ATGATGGCCTTCAGCATGGCATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_171279898.1\|807815_810290_+\|CS1-pili-formation-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|374266
NZ_CP038513.1\|WP_171279897.1\|807102_807765_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376075
NZ_CP038513.1\|WP_171279892.1\|791144_792980_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|236730
NZ_CP038513.1\|WP_011704113.1\|789722_790214_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NZ_CP038513.1\|WP_017410538.1\|793243_794146_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176120
NZ_CP038513.1\|WP_171279896.1\|806470_807043_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|374549
NZ_CP038513.1\|WP_016348936.1\|797257_798448_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273323
NZ_CP038513.1\|WP_162516919.1\|794257_795184_+\|sodium-dependent-bicarbonate-transport-family-permease	unknown	unknown	gnl\|CDD\|377582
NZ_CP038513.1\|WP_171281195.1\|814996_816181_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224992
NZ_CP038513.1\|WP_171279899.1\|810294_811920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171279900.1\|813592_814828_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP038513.1\|WP_171279894.1\|801181_801622_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_044798721.1\|812678_813317_-\|leucine-efflux-protein-LeuE	unknown	unknown	gnl\|CDD\|236807
NZ_CP038513.1\|WP_005306985.1\|795188_795491_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171281194.1\|811946_812633_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP038513.1\|WP_171279893.1\|796059_797184_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP038513.1\|WP_171279895.1\|805246_805870_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP038513.1\|WP_118880102.1\|790232_791027_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP038513.1\|WP_118880103.1\|782784_783621_-\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	unknown	unknown	gnl\|CDD\|185071
NZ_CP038513.1\|WP_011704108.1\|795553_796063_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_171279898.1\|807815_810290_+\|CS1-pili-formation-C-terminal-domain-containing-protein	gnl\|CDD\|374266	pfam15976, CooC_C, CS1-pili formation C-terminal. CooC_C is a highly conserved C-terminal domain on fimbrial outer membrane usher proteins like TcfC. The protein is required for CS1 pilus formation.	4.37805e-27
NZ_CP038513.1\|WP_171279897.1\|807102_807765_+\|hypothetical-protein	gnl\|CDD\|376075	pfam18649, EcpB_C, EcpB C-terminal domain. This is an immunoglobulin like domain found at the C-terminal region of EcpB. It is a periplasmic chaperone which along with EcpE help assemble the E. coli common pilus (ECP) EcpA and EcpD subunits. The C-terminal domain is predicted to contain residues that might be involved in binding a C-terminal carboxylate anchor.	9.38196e-30
NZ_CP038513.1\|WP_171279892.1\|791144_792980_-\|TonB-dependent-receptor	gnl\|CDD\|236730	PRK10641, btuB, TonB-dependent vitamin B12 receptor BtuB.	2.06165e-176
NZ_CP038513.1\|WP_011704113.1\|789722_790214_+\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	2.37756e-31
NZ_CP038513.1\|WP_017410538.1\|793243_794146_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176120	cd08429, PBP2_NhaR, The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold. NhaR is a positive regulator of the LysR family and is known to be an activator of the nhaA gene encoding a Na(+)/H(+) antiporter. In Escherichia coli, NhaA is the vital antiporter that protects against high sodium stress, and it is essential for growth in high sodium levels, while NhaB becomes essential only if NhaA is not available. The nhaA gene of nhaAR operon is induced by monovalent cations. The nhaR of the operon activates nhaAR, as well as the osmC transcription which is induced at elevated osmolarity. OsmC is transcribed from the two overlapping promoters (osmCp1 and osmP2) and that NhaR is shown to activate only the expression of osmCp1. NhaR also activates the transcription of the pgaABCD operon which is required for production of the biofilm adhesion, poly-beta-1,6-N-acetyl-d-glucosamine (PGA) .Thus, it is suggested that NhaR has an extended role in promoting bacterial survival. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.38943e-82
NZ_CP038513.1\|WP_171279896.1\|806470_807043_+\|fimbrial-protein	gnl\|CDD\|374549	pfam16449, MatB, Fimbrillin MatB. This is a family of fimbrial proteins.	2.08912e-68
NZ_CP038513.1\|WP_016348936.1\|797257_798448_-\|MFS-transporter	gnl\|CDD\|273323	TIGR00890, Uncharacterized_MFS-type_transporter_YhjX, oxalate/formate antiporter family transporter. This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.75238e-104
NZ_CP038513.1\|WP_162516919.1\|794257_795184_+\|sodium-dependent-bicarbonate-transport-family-permease	gnl\|CDD\|377582	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily. Family of bacterial proteins that are likely to be part of the Na(+)-dependent bicarbonate transporter (sbt) family. Members carry 10TMS in a 5+5 duplicated structure. The loop between helices 5 and 6 in Synechocystis PCC6803 is likely to be the location for regulatory mechanisms governing the activation of the transporter.	2.57558e-128
NZ_CP038513.1\|WP_171281195.1\|814996_816181_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224992	COG2081, COG2081, Predicted flavoproteins [General function prediction only].	0
NZ_CP038513.1\|WP_171281194.1\|811946_812633_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	1.70134e-07
NZ_CP038513.1\|WP_171279900.1\|813592_814828_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.98529e-106
NZ_CP038513.1\|WP_118880102.1\|790232_791027_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.1277e-106
NZ_CP038513.1\|WP_044798721.1\|812678_813317_-\|leucine-efflux-protein-LeuE	gnl\|CDD\|236807	PRK10958, PRK10958, leucine export protein LeuE; Provisional.	1.92703e-110
NZ_CP038513.1\|WP_171279893.1\|796059_797184_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	5.06932e-176
NZ_CP038513.1\|WP_171279895.1\|805246_805870_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.93991e-54
NZ_CP038513.1\|WP_118880103.1\|782784_783621_-\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	gnl\|CDD\|185071	PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional.	5.47409e-144
NZ_CP038513.1\|WP_011704108.1\|795553_796063_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	6.96575e-80

>NZ_CP038513.1|WP_016348936.1|797257_798448_-|MFS-transporter
MTKEMNRTRYLTLLGTIITQFALGSVYTWSLFNAQLSDKLDEPVSQVAFAFGLLSLSLAVASSLAGKLQERFGVRNVTLGAGVLLGIGFFLTAHASNLAMLYLCAGILVGFADGTGYLMTLSNCVKWFPERKGLISACSIGAYGLGSLGFKYINLLLLSSNGLETTFQLWGLIAMSMVLVGGMLMKDAPKQAAAVQQSESRDFTLAEAMRKPQYWMLALMFLTACMSGLYVIGVAKDIGENMVGLPAVVAANAVAIIAMANLGGRLVLGILSDKMSRIRVITIAQLITLAGMALLLFVPLNANLFFVAVACVAFSFGGTITVYPSLVSDFFGLNNLTKNYGVIYLGFGLGSIIGSIVASLFGGFMATFNLILVLLVVALVLSLTIRLPAPVSVERA
>NZ_CP038513.1|WP_171279893.1|796059_797184_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MILPPATLGMLGGGQLGRYFVMAAHRLGYKVVVLDPDPASIAGAAADHHIVAAYDDPTALHDLASRCAAVTCEFENVPATALALLEQYQPVRPAAGAVRICQDRREEKAFLSRAGIPVAPNQTLQPGEPLPALPAALFPAILKTAREGYDGKGQWTIQAADQLPAALAASGVPCVLEQRLALEGEFSLTLARSPSGAIGALPLVQNWHSGGILDQTRSPAKVPALEADARRIAEQLIAALDYVGVLTVEFFLVAGKLLVNELAPRPHNSGHPSLNNAECSQFELQVRALCDLPLPARIAVRPAMLLNLLGDLWQAGTPDWAALLALPDVHLHLYGKGEPRPGRKMGHVTITAADWPTVEETCQRVRQLLGLPPR
>NZ_CP038513.1|WP_011704108.1|795553_796063_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MNTPPLIGLVMGSDSDWPVMQAAARILKEHGVPYEARVVSAHRTPDLLFEYAASARERGLRAIIAGAGGAAHLPGMVAAKTTIPVLGVPIPTRQLKGMDSLLSIVQMPKGVPVATFAIGEAGAANAGLFAVSLLSVAQDGDAPRYQQQLDGFRANERDRVLALTLEDPA
>NZ_CP038513.1|WP_005306985.1|795188_795491_+|hypothetical-protein
MQTEIRTLLTVITEANLEPTLLRTLTREGLRGYTITDARGRGDHGERNASWSESGNIRLEAICSREQAERLLAHLQSRYYPDYAMVAFLQPVEIVRPEKF
>NZ_CP038513.1|WP_162516919.1|794257_795184_+|sodium-dependent-bicarbonate-transport-family-permease
MLDVVVLFFLFGLLAGLVRSELKLPPALYDTLSLFLLLAIGLKGGVGLAQQSLQPLLPQLALVILLGMLQTLAGFAVLRLKMNRVDAAATAAHYGSVSVATFAVGVNWLTERGISFESQLSIFLAVMEIPAILVGIVLAQGVSRQTRWRRLAHETFLGKGVTLLLGGMAIGYLAGPDGIAPLKPLFVDLFKGALALFLLEMGLIVARQCQDLRRHGLFLLGFALLMPLASAGLGLMIGQLMGLSLGGLTLLATLAASASYIAVPATMRIAVPQANPGLSLSAVLGVTFPFNIMLGIPLYYSWARHFTE
>NZ_CP038513.1|WP_017410538.1|793243_794146_-|LysR-family-transcriptional-regulator
MLNYKQLYYFWHVARSGSVTRAAEQLHLTPQTVSGQVAELELSLGVALFNRVGRRLALTAAGRQALEQAGAIFSLGADLEHTLRHASQELTMQVGIADSVPRTLAFELLAPAMALATPLRLVCHEERAEQLFSELASHKLDMVLIDRPLPPDSGVRGYNHELGRSPLALFASPELAARARQGFPASLEGLPLLIPGEKSATHDSLLAWYRQQGIHPHLVGQFDDSTLMKSFGKAGMGIFPAPLAMADEIARLYGVERIATLTEVTLSYYLVSAGRHLSHPGVQAVMEGAKQRLAALGGKK
>NZ_CP038513.1|WP_171279892.1|791144_792980_-|TonB-dependent-receptor
MSKKLLAAALLPTAAFAQTTIPVNPTLVITANRVEQPISSVLAPVVVIDRAEIESRQVQSLPALLKTLPGVQITTLGGRGHMSSLFIRGTNSNHSLVLMNGRPIAAMVAGTPDLSQIPLGNIERIEYIRGPRAAVYGSDAIGGVINLITKTSAKNGSETHLKGGVGSNGYGQGQLRTVQALGQQTDMNMMIGYERTDGFDVIANAQQPDRDGFDSLNGQFGLNHAFNDAWSADFNAQGYDNQTEMDDAYQSADQSRVQAFQYDGGLKYQSGALSSRLEASYGENKLKSWLESKGESSAEPIHTGLTRFSWINSWSGVEGLNLTGGADWQQEQLKSDTRSYGQAFNAPDRDNTGLFVVGSYRWQALLWELSGRTDDNKQYGRHNTWSAASGLDLDDNHNVRLSYGTAFKAPTFLDLYYPGYENPALKPEESKNLELGFNGRYTGWDWSLNLYRNQIQNLIACQSASSTCRPDNTDAEIRGVEVALGLETGPLRHDLSFDYTRAEDKNDGDQQLLRRAKQKASWLTQVQLGPVDLSTELLYVGKRDDKNFSSFPAERVELGSYTLINLGASYGVTPQFTLGGRIDNLLDRDYAPAYGYASAGTEFKLTADYRL
>NZ_CP038513.1|WP_118880102.1|790232_791027_-|glutamate-racemase
MANILVFDSGMGGLTIYREIRRALPAHNYFYCFDNANFPYGELSEAALTEVCTRLVSHMVVEHAIDLVVIACNTASTIALPSLRAAMTVPVVGVVPAIKPAAALTRSGCIGLLATPGTVSREYTHELIAQFAPGKRVLLKGATELVVEAEHKLAGLPVNMALLREVLADWLEGEEHPDTLVLGCTHFPLLDEEIRQLMPACQLVDSGSAVAKRVAHLLAGLVTTPTRLEDVRGKAYCTRLDAQTRKLTAPLQAWGLSSLEEVRF
>NZ_CP038513.1|WP_011704113.1|789722_790214_+|RNA-binding-protein
MNLSKFPVYVQAAILALVLALVGYLVAQALQFSLKAEVIFAVGLAIGGFVVPLFLNRAPAGVAELASSQETCTLYVGNLPYRANEIAVRELFAEQGQVISVRLMKDKATGKRRGFGFVEMPAADAAKAIAALNDKEYQQRTLKVREANDKRDKDEREGSEVDA
>NZ_CP038513.1|WP_118880103.1|782784_783621_-|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA
MKAEYLQRFGGIARLYGQNALRSFSQAKVCVVGIGGVGSWAAEALARAGINQITLIDMDDICITNTNRQIHAMQGTVGRLKTEAMAERIRAINPDCKVIEVDDFVTADNLAEHIKREFDYVVDAIDSVKAKVALIAFCKRNKIPVIVAGGAGGQMDPTQITVADLAKTIQDPLAAKVRSDLRRLHNFSKNPARKFGVECVFSTEQLSYPDGNGGTCQAKAASDGTMKMDCASGFGAVTPVTATFGLVAVSRVLKKIAERGARAEKEAGNENAGSISEA
>NZ_CP038513.1|WP_171279894.1|801181_801622_+|hypothetical-protein
MSQKGVLVALLAGCYAMAAQAGTQTYQLNWPATASKSTGMEISLTHPGQQPVNSVSTSSPVQTEAINVSNPDFNTTYQLQARTLYASLPEQAGTDFKLALNGQPLPRHHALPLTQATRYFLSYLAPAARPDQTGEAAYELLVYWHG
>NZ_CP038513.1|WP_171279895.1|805246_805870_-|response-regulator-transcription-factor
MAKILIVDDHPAIRMAVNILLKQDGHHILAEVDNGVDAISYARKNKPEMVVLDIGIPKLDGIEVIKKLKDMDASIQVVILSAQATHHIMVRCLQAGADGFISKLDDLSLLRSALDKIGKGQLYFPRDIIAGARHAHEVDRTDLLSALSDREMSVLLLICQGHTNKQIAENMLLSEKTVSTYKTRLMQKLNVTNMVDLISLAKRQELL
>NZ_CP038513.1|WP_171279896.1|806470_807043_+|fimbrial-protein
MKKTLIALTVTGLGLAATAQAAVEASAVATWQATAKKDTTSELVVTPLSSLSFQYAEGIKGFNTVNGLFDVAIKGDASATSFTLKAKKLNGTLNHLGGNSTVDVGVLWGGAPVSTTAYTTLIDTAAGISGGNLSPIAQGFKEDTQRTTAQGSFSFNIESATANGSTATFEALPDGLWSGEVNVEFVANWA
>NZ_CP038513.1|WP_171279897.1|807102_807765_+|hypothetical-protein
MNLKMLMAWMLFIPGISQAINVGSVTTFIDAGSQDVAKEIENASDQARLVTITVTRISSPEEGGQEMPMEVDGELMLSPSRLMLPANAKNNVRFFYKGPQDGKERYYRIRWLDTALSMDDQRNERRQAVATTSAQIGTILVVTPRQQKFDYLLQGDVLINKGNASYRTVAYGTCLKQSREQCKETYYDLPGKQRQFRQVDLRDPKSHVGLWLGQEFVVIK
>NZ_CP038513.1|WP_171279898.1|807815_810290_+|CS1-pili-formation-C-terminal-domain-containing-protein
MPKFETMVRDMLKKACLLPASLLIAMSASANASAPLKIANIIIPASFASALAEGIAVPVRLQYQDQALALDTITEESVGNATLILRDGTLHLLNLDFNQGQSDVALRQELVDLLQQNQLRTFSSDGRLVINDSATLQLDLIAMLLTIQVTKAAFGEKRVSTTKTSLMPSVAALTSVNRYNLGYSFANSRQAGSSSTNFAQLNSLVGYSEHHLDLDGSLYNLGETNQSGSLYRAMYERDIEDRRFATGMVSTWDLQTLGGVSALNAGRIYGISYGNQARSRTVNESESTTPIQVFMPSAGEVRVYRDGKLIGLQNFSIGNHRIDTSRFPHGSYNVTVEIHIDGRLTESSNQRVTKLNNSLGFDQEWGWQSWGGLMEASQDGARSPLLGLSLARTFETTNLTLTGYGFKDALVSESQANWQLTDRISTQLQGMLASDTSWRLSSGVTAQVHDNISLWLSQEKLDTGSKLTTAPLDLYTAGISINLGGWHDRLGSLSFNTTHDREQGSDRSYIDYYQSLYSGRYGQLSLRTSLQSSSATLSGFNNKSLTLDYSIPFDNLFSLGMSSNEEGHTTANLSYQRRMEGFINTATLNGAKVINGAEHNDLALSGTLGFENSMTGGTLTLGRSQGGDVNGNLIARGAVITTGDEILASSQNRSGSGLLIDTGIGKEGKMLAKINGQEYSLEGSKTFVALSPFQEYEVELLNSKTTKDSYDINTGKQRYTLFPGNVATLDATRSVKEMVTVFGIIRAEDGSVIANARIDNHIGTTVTNETGEFSLDVDKANPVLSFKHGNEFCEAELDLAQQSGAAWVGDVICRGLPTYAMVRG
>NZ_CP038513.1|WP_171279899.1|810294_811920_+|hypothetical-protein
MKMTKIVISACFIGGMLASAGTQAAVSKTVWGDAPLRNFLFIENQEDSNLFVAPTDALDPRLSGANAWTSLKGTRQVSLAYVDNGYNTDINNWNVDMWEEGPINQPYINQRCIMSYTRCDPNTAEAVNKPAVVDGKGFYGLLGAAAGWGHAKLSASFFDYLRSMPVGSKLLREMNLCATLVSFNAATGARCKDQASGYWYVRKIEHKKAGHIKFTQTNAISEVTVDSNGNPYVLPGSRGCENYVLNNVSGVLCRFLDYSFIEDGSQTFDPIYLFTNIKDAGLKSAISATDVQVTANMTNWAWNGYDYTARYLKNQQSVSLFLSGNFFKQVVRLGLQDRLTRDLINFNMRNAHAPESGYYEFSGTTEIIIKPRHFSVSILSSEGITNPYREGQIGKDVLSFQYNISDSGPVSADVLEMSLAQDKGTPYQGYCTFYPADSQEPESAVPIPARLVFDSTRYGANYRHPIGCDRVPVNIRTLAIKDSQPAHNWIDPNGNPGITRFYLLKLDFDLTDPRAAQTTEGSMWEGERHQSGTLTIKGSWR
>NZ_CP038513.1|WP_171281194.1|811946_812633_+|fimbria/pilus-periplasmic-chaperone
MKNLARSLTLLTALLLAGPQAWAIDIGPMTAIMEHDEEFISRTVTNNASTPKLYELAAYRITSPTADEAILPMAPGELLFAPKRFVLHPDQRKHVKLYYKGPGDRQERYYRVVFTEVPVAQAGIPDNAGKRSAVEMTIALQSILVVRPRQERFEYRLDQVAGSITNTGNSFFEFMVKQGCDQPDSMADNKYLLPGETYRNPKISQSGNQKLIVHQSRFVRVGKDCWPD
>NZ_CP038513.1|WP_044798721.1|812678_813317_-|leucine-efflux-protein-LeuE
MFESLGVINVWTYLVGLFFIIIAPGPNSIYVLRTGASRGVGPGYQAALGVFVGDAILIFCAYLGIASLIRTTPLLFTLVRYLGALYLLYLGVKILHANFIARREGQASVVEHGERYFSKALTLSLTNPKAILFYVSFFVQFVDFNYAHTWVSYLVLASMLEAMSFVYLTLLIFGGTLMARFFARKVRLAKLGNGLIGLFFMGFAARLATLSS
>NZ_CP038513.1|WP_171279900.1|813592_814828_+|MFS-transporter
MEKSLSTDQPLAAATAHDALNRTTYPVIAAISFSHLLNDMMQSVLLAIYPLLKLGLNLSFAQIGLITLTYQFTGSLLQPLIGLYTDRRPMPYSLPFGMGFTMIGLLSLSQAASFGAVLLSAMLIGIGSSVFHPESSRVARMAAGSQPGLAQSLFQIGGNLGSAIGPLLAALIIVPQGQDSAAWFSLFALVGVIVLSLVGRWSSHHAANFHKRMKAHLGHGLSRRQIGWSLAILGLLMFSKFFYMASLSSYYTFYLMDKFSLSLDSAQLYLFAFLFAVAAGTVLGGPIGDRIGRKRVIWISILGVAPFTLLLPHVDLFWTSVLSVIIGLILASAFSAILVYAQELVPGKVGTISGLFFGFAFGMGGIGAALLGQLADATSIETVYQICAYLPLIGLLTAFLPTLRKGERATP
>NZ_CP038513.1|WP_171281195.1|814996_816181_-|NAD(P)/FAD-dependent-oxidoreductase
MKQFDVVVIGAGAAGLMCAAQAGYRGRSVLVLDNAKKPGRKILISGGGRCNFTNHQASPHAFLSANPHFCKSALARYTQQDFIDLVDRHGLSYHEKTLGQLFCDESAKEIVDILLTECDWAGVTLQFQTEILTVSKTDDGFVLTTSQGEISCHSLVVATGGLSMPKLGATPYGFKLAEQFGLKVLPTRAGLVPFTLHQAEKEAFADLAGVSLPVAVTAEDGTCFKEAMLFTHRGLSGPAILQISSFWLAGEKIHINLLPELDIAATLREWAQAHPAQELKTVLGRELPKRFVDKLVELGQLVSKPMRQYNERELEAVATLLGDWQILPNGTEGYRTAEVTLGGVDTNDLSSKTMEARKVAGLYFIGEVVDVTGWLGGYNFQWAWSSGWVAGQYC

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Crispr_ID: NZ_CP038513_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_7

872031-872126

Orphan

Consensus_repeat	Method
AGGAGGAAAGGGTTCGGATCAGGTTGGAATA	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP038513_7

>merge|NZ_CP038513|7|872031-872126|CRISPRCasFinder
AGGAGGAAAGGGTTCGGATCAGGTTGGAATATTCGAACTGCATCTGTCCACTCCGTTCCGTTGTCAGGAAGAAAGGGTTCGGATCAGGTTGGAATA

>NZ_CP038513|7|7|872031-872126|CRISPRCasFinder
AGGAGGAAAGGGTTCGGATCAGGTTGGAATA	TTCGAACTGCATCTGTCCACTCCGTTCCGTTGTC
AGGAAGAAAGGGTTCGGATCAGGTTGGAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_118880068.1\|862355_863180_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP038513.1\|WP_171279911.1\|882102_883029_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236719
NZ_CP038513.1\|WP_010635605.1\|876681_876930_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP038513.1\|WP_017410490.1\|869800_870904_-\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP038513.1\|WP_011704048.1\|870906_872010_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP038513.1\|WP_005307144.1\|873777_874536_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270427
NZ_CP038513.1\|WP_010635612.1\|865479_865893_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|182691
NZ_CP038513.1\|WP_170321048.1\|876218_876356_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP038513.1\|WP_016352406.1\|876355_876715_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|179327
NZ_CP038513.1\|WP_011707929.1\|874536_875205_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP038513.1\|WP_118880066.1\|866127_866832_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP038513.1\|WP_171279908.1\|863626_864877_+\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|236517
NZ_CP038513.1\|WP_011707925.1\|876935_878582_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP038513.1\|WP_171279907.1\|863109_863343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_011707928.1\|875217_875952_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP038513.1\|WP_118880065.1\|866898_867276_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319922
NZ_CP038513.1\|WP_016348873.1\|864949_865387_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|182691
NZ_CP038513.1\|WP_171279909.1\|867392_869804_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP038513.1\|WP_171279910.1\|880123_882106_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720
NZ_CP038513.1\|WP_029302505.1\|878691_880053_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_118880068.1\|862355_863180_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.09686e-32
NZ_CP038513.1\|WP_171279911.1\|882102_883029_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|236719	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD.	4.9679e-69
NZ_CP038513.1\|WP_010635605.1\|876681_876930_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	2.48512e-39
NZ_CP038513.1\|WP_017410490.1\|869800_870904_-\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	2.40747e-139
NZ_CP038513.1\|WP_011704048.1\|870906_872010_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	0
NZ_CP038513.1\|WP_005307144.1\|873777_874536_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270427	cd13709, PBP2_YxeM, Substrate binding domain of an ABC transporter YxeMNO; the type 2 periplasmic binding protein fold. This group contains cystine-binding domain (YxeM) of a periplasmic receptor-dependent ATP-binding cassette transporter and its closely related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.07736e-125
NZ_CP038513.1\|WP_010635612.1\|865479_865893_-\|Hsp20-family-protein	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	2.24428e-67
NZ_CP038513.1\|WP_170321048.1\|876218_876356_+\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	6.70577e-13
NZ_CP038513.1\|WP_016352406.1\|876355_876715_+\|ribonuclease-P-protein-component	gnl\|CDD\|179327	PRK01732, rnpA, ribonuclease P; Reviewed.	3.11911e-64
NZ_CP038513.1\|WP_011707929.1\|874536_875205_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.7493e-73
NZ_CP038513.1\|WP_118880066.1\|866127_866832_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.9331e-65
NZ_CP038513.1\|WP_171279908.1\|863626_864877_+\|valine--pyruvate-transaminase	gnl\|CDD\|236517	PRK09440, avtA, valine--pyruvate transaminase; Provisional.	0
NZ_CP038513.1\|WP_011707925.1\|876935_878582_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP038513.1\|WP_011707928.1\|875217_875952_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.65646e-134
NZ_CP038513.1\|WP_118880065.1\|866898_867276_+\|VOC-family-protein	gnl\|CDD\|319922	cd07261, EhpR_like, phenazine resistance protein, EhpR. Phenazine resistance protein (EhpR) in Enterobacter agglomerans confers resistance by binding D-alanyl-griseoluteic acid and acting as a chaperone involved in exporting the antibiotic rather than by altering it chemically. EhpR is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.	3.50429e-61
NZ_CP038513.1\|WP_016348873.1\|864949_865387_-\|Hsp20-family-protein	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	3.34835e-46
NZ_CP038513.1\|WP_171279909.1\|867392_869804_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP038513.1\|WP_171279910.1\|880123_882106_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	0
NZ_CP038513.1\|WP_029302505.1\|878691_880053_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0

>NZ_CP038513.1|WP_011704048.1|870906_872010_-|DNA-polymerase-III-subunit-beta
MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLNSDSQDGRTTVPARKLLDICRGLPEGADIRLNTEGERLIIRSGRSRFNLSTLPATEYPNIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRLATCRREVVTESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTSKLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANNPEQEEAEELLDVQYEAGEMEIGFNVSYVLDVLNTLKCDQIRISLSDSISSAIIEDFDSQDAQYVVMPMRI
>NZ_CP038513.1|WP_017410490.1|869800_870904_-|DNA-replication/repair-protein-RecF
MSLVKLQLSDFRNIQQASLALSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGERAFTLFAQCELEGRQVPIGLAKDKSGETQLKIAGAQAQRLAELAELLPVQLIHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQSSQYRQLAYWDQELVRLGGELAEFRASYCQAITPLIKEMTADFLPEFDISLGFYRGWEKDTPLNELLEAGFERDRALGYTGVGPQKADVRLKANGVPAQDILSRGQLKLLVCAMRLAQGLYLNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAIDTGQLADMMDANDCKLFHVEQGKISETLEKAESKL
>NZ_CP038513.1|WP_171279909.1|867392_869804_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDIQVKIHSDGSVSVRDNGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTGTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDERDGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPAIGGEALERLVNQHRSVTHLITRMSRRAPEAVLTQLIYQPELNEALLNSESDLLAWCQGMEAVLNESNQGIQYQMQVRRDEERRLFVPHAVVRQHGVDREYPISYDFLQSSEYRQLVSLGKEIANLIEEGGYIKRGEKVKPVSSFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGADQLFSTLMGDAVEPRRDFIETNALRVANLDV
>NZ_CP038513.1|WP_118880065.1|866898_867276_+|VOC-family-protein
MLVPQFTILYVANPARSALFYCELFGRPPVEESPTFAMFVFESGARLALWSSATVEPAVTQTAGAMELAFALPDDAAVDRQSAEWQARGLTLIQAPTRMEFGYTCMALDPDGHRLRLYCPAPELG
>NZ_CP038513.1|WP_118880066.1|866127_866832_+|YafY-family-transcriptional-regulator
MSRSERLLALLQLLRGHRYAITGSELASQLGISLRTLYRDIATLQAQGAHIEGEAGIGYVLRPGFMLPPLMFSEEELDALVLGSRWVAAHADHALSTAASSALAKIEAVLPADYRQQLHANALLIGTSRGDSPVDEAPLRSAIRQQRKVSLSYRDLKEDSSERTVWPCALGYFDQVRVLVAWCELRQDFRHFRVDRISAMRLEAESYPGNRERLLKEWRDSQQIPQPRFIADRN
>NZ_CP038513.1|WP_010635612.1|865479_865893_-|Hsp20-family-protein
MRSIDFSPLYRSAIGFDRLANLIESAASNGNAGYPPYNIEQLGDSDYRISMAVAGFTQEELELSFQENLLTVKGNKQADTERNYLYQGIAERGFERRFQLADYVRVKGADLKNGLLHIDLVREVPEAMKPRKIEING
>NZ_CP038513.1|WP_016348873.1|864949_865387_-|Hsp20-family-protein
MRNLDFSHLYSNAVGFERMARELEGLFEQKTAAYPPYNIEKRDHDGYRITVAVAGFEREELELETENGTLKVKGRKAAADERQFLHQGIAERDFELAFKLSQHVEVQGAKLEHGLLTIDLARELPEALKPRAIPIGKPEQLALPG
>NZ_CP038513.1|WP_171279908.1|863626_864877_+|valine--pyruvate-transaminase
MEFSLFGEKFTRHAGITQLMDDLNQGLTNPDAIMLGGGNPAPIPAMLERFQAEAKSLLDNGELVKAMANYDGPQGKDRFTKALAALLSKELGWEISARNIALTNGSQNAFFYLFNLLAGEFADGRKKKVLFPLAPEYIGYADSALADDYFVAYKPTIEKLADGQFKYHVDFESLQVGDDIGVICVSRPTNPTGNVLTDEEIEHLDQIARDKGIPLLINNAYGVPFPGIIFSEAKPFWNANTILCMSLSKLGLPGTRCGIVIADEKIIQAITNLSGIINLAPGSLGPAITIPMIESGEIIALSEQVVKPFYRQKAELAVQLLREAIPDPRFHIHKPEGALFLWLWFEGLPIHCQELYERLKAKNLLIVPGHYFFPGIDDPEWRHSQECIRLNYSQSEELVRRGIAILADEINALYAG
>NZ_CP038513.1|WP_171279907.1|863109_863343_-|hypothetical-protein
MKILIATLIASSLSLNVMADEYPRPELDSAKLAQEIAAQQQQASHAMVDEAIHNLKPLALETLVVEASSADATHPES
>NZ_CP038513.1|WP_118880068.1|862355_863180_+|helix-turn-helix-transcriptional-regulator
MAFILPDHPFDPDQHDGSAIGIASALGWHDSGRHQHRRHQLLFAQAGCMTIELDDQVCLLPPTRAAWLPAGLPHRVLMRGVVAYRSLYFQPEPGLPTEMAVLEVNPLLREIIERMAIWPWDKPAAEQHCTQALLQEELAQAPRESWELPLPSDSRLAGWLQEVKRGDTLPDRLNRLAERVGASDKTIGRIFMRETGMSYQAWRQQWRLLRALELLAEAEPISRVAATLEFASDSAFISFFRQHTGQTPLRYLSSRGESHRPSLPPPPGSPAPAA
>NZ_CP038513.1|WP_005307144.1|873777_874536_+|amino-acid-ABC-transporter-substrate-binding-protein
MTSSIKLVSGAAILLAALSGQAIAQETIKVGMSGKYFPFTFVKQDKLQGFEVDMWNQIGERTGYKVEFVTASFSGLFGMLETGRVDTISNQITITDERKAKYAFSQPYVYDGAQIVVRKGNSTIHGIKDLEGKKVAVNLGSNFEELLRKNDPNKKIDIRTYDSAFEQDVALGRIDAFVMDRVSTAQLIKESKLPLQQAGAPFETIENALPFLKTPEKQALLKKVDDALTAMRKDGSLRQISEKWFASDITDK
>NZ_CP038513.1|WP_011707929.1|874536_875205_+|amino-acid-ABC-transporter-permease
MMEFDLEYTLGLFPILLKYLGTTMEMALWGFVLALVLSLALAIVRVFRVPVIHWLAMLYISFFRGTPLLVQLFLLYYGLPQLFPIFVGMDAFTAAIVGLTLHFAAYMAESIRASIIGIHKSQMEAALSIGMSRYQAMQRIILPQAARIATPSLMNYFIDMIKSTSLAFTLGVAEIMGKAQMEASSSFKFFESFMAVALVYWVVVIFFTRLQHLLEVRLNRAY
>NZ_CP038513.1|WP_011707928.1|875217_875952_+|amino-acid-ABC-transporter-ATP-binding-protein
MIKLTGLSKAYDGNQVLNSIDLEVKKGEIVVIIGPSGTGKSTLLRCLNLLETPDAGNLAIDDLQLNLAKASEQQAIELRKRASFVFQNYALFANKTALDNIAEGLITVWKQPKAEARATALGILKDIGLADKQDAYPASLSGGQQQRVGIGRAMAAHSKVILFDEPTSALDPEWVDEVLGLMKELARQHQTMVVVTHEIEFARDVADRVIFMEGGRIVEQGPPDQILVDPQDPRTREFLRKVLK
>NZ_CP038513.1|WP_170321048.1|876218_876356_+|50S-ribosomal-protein-L34
MMKRTFQPSNLKRKRSHGFRARMATANGRKVLAARRAKGRARLVV
>NZ_CP038513.1|WP_016352406.1|876355_876715_+|ribonuclease-P-protein-component
MPTQHAFSRELRLLTPEHFKRVFAEPVRAASPQITLLACPNTLEHPRLGLAVPKKALKRAVWRNRVKRVVRESFRLNQANLPAIDIVVIAKAGVKEMDNEELFKLLEKLWRTLSRRCNG
>NZ_CP038513.1|WP_010635605.1|876681_876930_+|membrane-protein-insertion-efficiency-factor-YidD
MAHSVTPLQWVAVKLIRLYQLIISPLLGPRCRFTPTCSQFAIEAIRLHGFIKGVWLASKRLLKCHPLSEGGYDPVPQPKRRN
>NZ_CP038513.1|WP_011707925.1|876935_878582_+|membrane-protein-insertase-YidC
MESQRNLILIGLLFVSFLLWQQWESDKAPKPAPTTVAQTEHFVPEAGQTGDIPQVSEQANANTARKLITVSSDVLKLTLDTQGGDIVSADLLAHKLEEGKDQPFVLLTSQPEHLYVAQSGLVGRNGPDSQAQGRPTYEAAQTSYQLADGQDQVVVPMTWTDSKGVVFTKEFVLKRGDYAVGVDYKIDNKSAEPVQVQFYGQLKQTVTTPKDQQGHAMVASAYRGGAFSSEDTRYKKYTFDEMKDADLNKTTKGGWVAMLQHYFVSAWAPNADDTNSFYSRVIPGKDQAIIGYKAPLVDVAAGQQAEVTSKLWVGPKLQDQMAKVANHLDLTVDYGWLWFIAQPLHWLLTVFHGFVQNWGVAIIMLTLLVRGIMFPLTKAQYTSMAKMRMLQPKLAALRERFGDDRQKMSQGMMELYKKEKVNPLGGCLPILVQMPIFIALYWALMESVELRHAPFALWITDLSVKDPFFVLPILMGASMWYLQKMSPTTITDPMQQKVMQFMPIIFTFMFLWFPAGLTLYWLVSNVISITQQTIIYRQLEKKGLHTRS
>NZ_CP038513.1|WP_029302505.1|878691_880053_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MTTDTIVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKLPRVRYAEYLPFRDEQGQPLDQGIALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIKGLRPARPGEFSERAFMNDKLDLAQAEAIADLIEASSEQAARSAMHSLQGQFSGKIQQLVESLTRLRIYVEAAIDFPDEEIDFLSDGKVAGDLYAIMAELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDKVEQIGIERAWAEIEQADRVLFMVDGTTTAAVDPREIWPEFVDRLPKKIGLTVVRNKADLTGEDLAPSQEQGHAVYRISAKTELGLPALREHLKACMGFQGNTEGGFMARRRHLDALERAAERLLVAKEQLEVFVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK
>NZ_CP038513.1|WP_171279910.1|880123_882106_-|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MNRIFPLPLRLPVSLLLGLTLALAGWELAGQLPVARWLATLLSPDLTDASQAVVHFSWLPRLAICLLAGAALGLAGTLMQQVLRNPLASPTTLGVASGAQLALMMVTLFAPSWLLLGREWIAMAGGSLAMGLVFALAWRRQLNPVVIVFAGLVINLYLAAISMGLLLFFQEELKGLLVWGSGSLVQNSWSGVSYLLPRLLLAGVLAAVLVRPLAVLELDDASARSLGVSLQRLRFAGLGLAVFVTACVVSVVGLIGFIGLAAPALVRLLGVRKLALRLLWAPLLGALLLAATDLLLQSLSRSGSVLIPTGAMTALLGAPLLLWLIPRLGIKSGTPKANTALLVARHPASGRLVGLMLMGLVLAVIASLLFGQGMDGWHWPSWLRWQAQLEWRLPRTLAAGAAGVLLALAGTLLQRVSSNPMASPELLGVSGGTFMGVIATALLLPALPLPMMLVGGLIGAFGCLLLLLLVNRSHGFQPERLLLSGIAITALFEPLQAIALANGDLRVQQLLSWMSGSTYYVTLPIAGGLVVLALTLLAACLLLSRWLDLLPMGPAVAAALGIRLNRAQLAILLLVAVLTASATLVVGPLSFVGLLAPHMAKLMGLVRARWHLLGAAVSGALLMVSADWIGQQILFPQEVPVGLVSTLLGGAYFMWCLRRL
>NZ_CP038513.1|WP_171279911.1|882102_883029_-|ABC-transporter-substrate-binding-protein
MLLFKKVGWFCCLLAPLMLQAEPAMPAATDLPQADAVKSVPRIATVDWTIAETLLALGVTPLAVGDVGSYRAWVGEPLLPAAVVDIGQRAQPNRELLAELKPDRILISPLAAPLAPTLSRIAPVQSIALYEPDANLWQRLHEATLTIAALVDKTTEAEQLLAGLDQDLAQMRATLPEDLPPLLVVQFIDERHVRVFGRHSLFEAVMQRLGLRNGWQGETNAWGFAVASLEQLMALPQARLVVVDPIPVGVSERLQEPGLWQQLPQVRAAAVLHLPAVWSFGGVLAARRFAVQLSTALQQDGQSGEGLQ

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Crispr_ID: NZ_CP038513_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_8

1859186-1859340

Orphan

Consensus_repeat	Method
TTGTCGAAGCTGCTGCTGGTCTCCTGATTGAGCAGGCTCACCAGCAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_8

>merge|NZ_CP038513|8|1859186-1859340|CRISPRCasFinder
TTGTCGAAGCTGCTGCTGGTCTCCTGATTGAGCAGGCTCACCAGCAGGAATCAGGCGCTTCTCGCCATGGTAGTCTGCACGTCAGTCCAGTCGGCGGAAGGATTGGTTGTCGAAGCTGCTGCTGGTCTCCTGGTTGAGCAGGCTCACCAGCAGGA

>NZ_CP038513|8|8|1859186-1859340|CRISPRCasFinder
TTGTCGAAGCTGCTGCTGGTCTCCTGATTGAGCAGGCTCACCAGCAGGA	ATCAGGCGCTTCTCGCCATGGTAGTCTGCACGTCAGTCCAGTCGGCGGAAGGATTGG
TTGTCGAAGCTGCTGCTGGTCTCCTGGTTGAGCAGGCTCACCAGCAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_171280186.1\|1859863_1860664_-\|methionine-ABC-transporter-substrate-binding-lipoprotein-MetQ	unknown	unknown	gnl\|CDD\|182939
NZ_CP038513.1\|WP_011704855.1\|1861323_1862367_-\|methionine-ABC-transporter-ATP-binding-protein-MetN	unknown	unknown	gnl\|CDD\|236863
NZ_CP038513.1\|WP_011704857.1\|1863400_1864159_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP038513.1\|WP_171280184.1\|1849507_1850884_+\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NZ_CP038513.1\|WP_118881837.1\|1842972_1843872_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP038513.1\|WP_168966419.1\|1855814_1857026_+\|EAL-domain-containing-response-regulator	unknown	unknown	gnl\|CDD\|238923
NZ_CP038513.1\|WP_171280182.1\|1844658_1845096_+\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|334445
NZ_CP038513.1\|WP_171280183.1\|1847166_1849479_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP038513.1\|WP_171280188.1\|1869201_1871070_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP038513.1\|WP_171280185.1\|1857064_1859041_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038513.1\|WP_118881832.1\|1860689_1861343_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP038513.1\|WP_118881827.1\|1867528_1869094_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|236692
NZ_CP038513.1\|WP_011704860.1\|1867064_1867538_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|182615
NZ_CP038513.1\|WP_171280187.1\|1865544_1867056_+\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|182554
NZ_CP038513.1\|WP_043171987.1\|1845194_1845893_+\|DUF3334-family-protein	unknown	unknown	gnl\|CDD\|314646
NZ_CP038513.1\|WP_011704847.1\|1851204_1851408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_162902017.1\|1864242_1865370_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP038513.1\|WP_010634959.1\|1845960_1846959_-\|DUF2860-family-protein	unknown	unknown	gnl\|CDD\|371359
NZ_CP038513.1\|WP_162902020.1\|1843944_1844586_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP038513.1\|WP_162902018.1\|1862838_1863294_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_171280186.1\|1859863_1860664_-\|methionine-ABC-transporter-substrate-binding-lipoprotein-MetQ	gnl\|CDD\|182939	PRK11063, metQ, D-methionine ABC transporter substrate-binding protein MetQ.	1.70085e-151
NZ_CP038513.1\|WP_011704855.1\|1861323_1862367_-\|methionine-ABC-transporter-ATP-binding-protein-MetN	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
NZ_CP038513.1\|WP_011704857.1\|1863400_1864159_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.32811e-35
NZ_CP038513.1\|WP_171280184.1\|1849507_1850884_+\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NZ_CP038513.1\|WP_168966419.1\|1855814_1857026_+\|EAL-domain-containing-response-regulator	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.36262e-95
NZ_CP038513.1\|WP_171280182.1\|1844658_1845096_+\|HIT-domain-containing-protein	gnl\|CDD\|334445	pfam01230, HIT, HIT domain.	2.82172e-20
NZ_CP038513.1\|WP_171280183.1\|1847166_1849479_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP038513.1\|WP_171280188.1\|1869201_1871070_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP038513.1\|WP_171280185.1\|1857064_1859041_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.63949e-64
NZ_CP038513.1\|WP_118881832.1\|1860689_1861343_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.30989e-106
NZ_CP038513.1\|WP_118881827.1\|1867528_1869094_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|236692	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional.	1.97397e-107
NZ_CP038513.1\|WP_171280187.1\|1865544_1867056_+\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	4.23608e-163
NZ_CP038513.1\|WP_010634959.1\|1845960_1846959_-\|DUF2860-family-protein	gnl\|CDD\|371359	pfam11059, DUF2860, Protein of unknown function (DUF2860). This bacterial family of proteins has no known function.	2.80802e-68
NZ_CP038513.1\|WP_043171987.1\|1845194_1845893_+\|DUF3334-family-protein	gnl\|CDD\|314646	pfam11813, DUF3334, Protein of unknown function (DUF3334). This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family are typically between 227 to 238 amino acids in length.	3.92324e-148
NZ_CP038513.1\|WP_162902017.1\|1864242_1865370_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP038513.1\|WP_118881837.1\|1842972_1843872_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.29043e-61
NZ_CP038513.1\|WP_162902020.1\|1843944_1844586_+\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	8.84796e-41
NZ_CP038513.1\|WP_011704860.1\|1867064_1867538_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|182615	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE.	6.75575e-78

>NZ_CP038513.1|WP_171280185.1|1857064_1859041_+|methyl-accepting-chemotaxis-protein
MKISSKLLLSFCFINLLVILSSSLVYHQLGRIGQAGNALLEQALPALQRDEASQKALVATISSLRAYLILGKDPAQAARLKQEWEGAWQVIEHQQFTTELARSLKAFKTSQQKVWDIAHTDENLPAHTLMLQEAGPLAESALDQLQSFANEEVATPQDQLPGDRRLLLKQVGDAYNGLSNALSALRDFLISGDPDYRTKYQDYYQFHQQRVAELKQQEANFTEAQKGIWSLFEEMSAPFAELVGQVISKRQAPDWDQANHLMATEIEPALGQLATQLAGQVTQTRAEVESMGQKMTSAGQAINRTLLLATLTVIVLGTLVALLFSRRLTRDIASLVLRADLVANGRLPARPLPVQSQDELGGLTGSINQMSGQLRQLVGEIQGAVGQVDGACGEVGSTTRAIVTDLASQNQRVDTVAAAIEQMSVSTRDVAGNIAEAARAAQQAEQQTRQGGHELARMTATMQQIAAMIGEANEAMGQLSSQSEQVGRITEVIATIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLASRTSQSTEEISQTIASIQQQTRQTVNTVGSGTRLVEEGRGAVDSVTGTLNAMLQLVQDLSGQLGAIATATEQQSRVAQEVAGTVEEIAGLSRQSSQRSQQGEEIVARLAQDTGRLTAVISRFELDA
>NZ_CP038513.1|WP_168966419.1|1855814_1857026_+|EAL-domain-containing-response-regulator
MNKTQHELVIMVVEDHAFQRKALMHQIRGLGYGSLLEAQDGVEALAMCQRHQVDILFCDLRMPGMDGMALLRRLSLGGFRGGIILSSALEDDVVEAVLRMSAAYGLQVLGRIEKPSSQQQISQLIGAWRPQQERAQEEDGHRLTLDELSLALEQDQLLPWYQPKVSFGSGQWVGMEALARWQHPEYGLISPARFIPLAEHNGLIDQLTEVIISKSLRDGHLWEQTGLSLNLSMNLSTTSLIEGDLCNTLINQCQRWSINPELITLEVTESSFVKDLGKSLEVLTRLRMHGFGLSIDDFGTGYSSMQQLALLPFTELKLDRSFVDRCFEDPSRLAIIESSIELARKLGLKSVAEGVEDELTWRLLARLGCDVCQGFFSARPMPREELMGWHDSWRERLPALLGA
>NZ_CP038513.1|WP_011704847.1|1851204_1851408_+|hypothetical-protein
MSIELTLLRTVETLVQKRITRLERRVSYLHLSPALLKDIGLEGQNVQIAHIREREYQTGFRLGNRIT
>NZ_CP038513.1|WP_171280184.1|1849507_1850884_+|dGTPase
MYSRLITPERIHPWGDEELLEATEQDRARIVQAAPVRRLQQKTQVFPLDVKASVRSRLTHSLEVQETGRQISRRVLAALPAGTVCEGAFVNLVEMSCLLHDVGNPPFGHFGEQVMSQWLAQELDGLFAVALGKAPSPQWAELRQDLLVFDGNAQSLRLVHSLHELNLTLGQLAALCKYPQQPPASRQATPYYGQHHGWSSKRGIFFSEQPLYSALGQSLGLAAGCRHPLVYIMEAADDISYCIADLEDAVDRRILGLGELLQALREADGGDYMAALLSAAVDSDRGFFPHFRQQLTRDLVALAASTYVSEHAQILSGAYPQALLHGQAPAARVLDILKRVARELVFMRPEVEALELEGYAALRGVLSTYACLLAQPASQFERLLAGQGDSELFFARRLYHRLSARHLKAYRLAVASRDPRFGEEAEQEWYYRVRLLLDYVSGMTDTYALEEFRLLSGI
>NZ_CP038513.1|WP_171280183.1|1847166_1849479_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKQIKSWAQYYVDLMTKLGLVRFSMFLATGIIVLAVSIQMGVTLFLRGTVDIVDLVRSVFFGLLVTPWAVYFLSIVVDQLEDSRQRLTRMVRKLQDMRERDLELNSQLQENISRLNAQIAETNRAETLRQQAIEDLENEVFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGKVEAELIGLTPFDVYKHDIASKVVETDKQVFASNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKRLGLLGFGRDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDTPLDPKRHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTRIDLPAFLDELETLSRIQAEQKGLYLHFDRDGEVPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLAHAADAPGKLALHFEVEDTGIGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYVDSDPGEGSCFTAELEVECIEGEVAVLEPEMPSLDILLVEDVELNVTVACALLSKLGHQVKVARDGAQALAMANPDDFDLILLDIQLPDMTGFDVAEQLLKRYGESLPPMVALTANATGDRQYYRDHGMQDVINKPLGSKAVREVIGHLFADLAGDEADEQADTVSQDALLDLPFLTDYADTVGKPVLLSSVDLFEKMMPDYMAVLDSNMIARDQAGVVEEAHKIKGAAGSIGLRRLQQTAQLIQSPDHPAWWENVEDWIETLRREYPGDIARLRRWLLS
>NZ_CP038513.1|WP_010634959.1|1845960_1846959_-|DUF2860-family-protein
MRNLTLLSLGLLAANAAHADLGEIPKQSGWSGFLLGGVNAVSYQSNFYAGDDNHSRINDLGSPDSESGLTPLLNADIRYTFADTRTQIFLGNLIQDAVRFDFTQQLGLRQEMGDKGIVATSLVFNVMPVELWSDPFATGVDRSSTDLKSKGARFAWDKIWGSNFYGNLTTREVDMDEERSGQQYDQSHGTHYAGMLDRNGKVHDMELSYQFHFGGNQLLEPAILYKEARLDGSAESFKNTGLKLTYAKRGPQWSFVSNLYTGKRKYDEANPIFGQHADADEFAVNGTFFWHNLFGVKALAATFTAAYSNADSDIDFYDSQSTRFSTGLLYNF
>NZ_CP038513.1|WP_043171987.1|1845194_1845893_+|DUF3334-family-protein
MIVTRADDDTVLTTEDVLLSLCHSVTDVLSAATQSQVRFSGMVQRISKTCLKPDIGCFVLFDGGFSGLVVINFSASAAMELYESYMLSMGLSKEDLAISHTSDEVSNVMGELMNQIVGSFTVKVGRDLQTHITQNQPKMLALNKQVMLSVDTNLDSPESRRVTFFTARNNIFYLELAMDKTEFIRIHNDGMDQEELDPDALIAQTKRESAQPAPAAAPVANDHDDLLDSLGI
>NZ_CP038513.1|WP_171280182.1|1844658_1845096_+|HIT-domain-containing-protein
MFELHSRLQADTRQLGDLPLCRVLLAKDSQYPWLILVPRVVNLREIHHLAPAQQQQLMQESCAVATLMEQALRPDKINVAALGNLVPQLHLHHVARFSTDKAWPGPIWGAHPSLPYDESTLQREAAGWRRKLANLAGFTPLETDS
>NZ_CP038513.1|WP_162902020.1|1843944_1844586_+|DUF2057-domain-containing-protein
MKSCRYGRGVSLLWAALGMKMVLGSAAWAAVEVRVPADFQILAVSAGTLHDELHATLPDGEQQLLVRYEGVIPSRSSSENDRQLRSAPQVLRYQASQQQVRLVANLPSDERGMAQYAESPVMSLQAGGQSIASQQDALITSGMLIGMDWRAKLAEYNQSGGRAALSTAVPVTATAGVVEPVTASALEGQLQQLFLKADPALRKRFVSWAVPRL
>NZ_CP038513.1|WP_118881837.1|1842972_1843872_+|LysR-family-transcriptional-regulator
MDISHLASFYEVVQKGSFSAAADSLGVSKGMLSRHVSALEMTLNAQLLQRTTRRLSLTEAGRTLYQQAGEIFALARQAEQDIQALTEEDGGRLRFTCPVSTGDRMVNDLLARFAELCPGVQVELNFTNAMIDMSQGEHDIALRAMSSIPDNLVALPLGRLKDVVVASPALLAREGIPATPYELGGRPCLLQGHNPAWEQWHFRKGEEEAHILVQGKVRANHYSTVLQLARAGMGYAKCPLMLVEPWLASGELVAVLDQWQTGLHPLHVLHAQQRRVPRKIRLFKQVLAQWFAERPHYLL
>NZ_CP038513.1|WP_171280186.1|1859863_1860664_-|methionine-ABC-transporter-substrate-binding-lipoprotein-MetQ
MKFGIKSVAAALLATLVLAGCGQKEENKTLKVGAIAGPETELVEVAAKVAKEKYGLTVEVVNFSDYVTPNVALNDGSIDVNAFQHKPYLDAQIRDRGFKLVPVGNTFVYPIAGYSKKIKALSELKDGAQIAVPNDPTNLGRSLILLEKQGLLKLKEGAGLEATVLDIASNPRNFKMVELEAAQLPRSLEDVDLAIINNTFAGQIGLTPTENGLFVEDKESPYVNLIVARDNNKDDEKVKQFVQAFQTDDVYKKGLELFKGGLVKGW
>NZ_CP038513.1|WP_118881832.1|1860689_1861343_-|ABC-transporter-permease
MSEAMINLLFTALGDTLIMVFASALFGCLLGLPLGVALHVTKAGQILANPLLNRTLGMVVNVGRSVPFIILLVAIIPLTRLIVGTSIGTIAAIVPLTVGCIPFIARLVEGALMEVPDGLLEAAKAMGAKPLQIITKVLLPEALPGIINSVTITLVTLVNYSAMAGAIGGGGLGDVGIRYGYQRFDPTVMLVTVVILVVLVQLIQSAGERLVNKCDHR
>NZ_CP038513.1|WP_011704855.1|1861323_1862367_-|methionine-ABC-transporter-ATP-binding-protein-MetN
MIKLIGLNKVYGKGSDAVHALRDVSLHVPQGKIFGVIGASGAGKSTLIRCVNLLERPTEGQVIVDGQDLVALSERDLTQARRQIGMIFQHFNLLASRTVSANIAFPLELAGWSKERIQQRVEELLALVGLEARAHAYPSELSGGQKQRVAIARALAPAPKVLLCDEATSALDPQTTRSILTLLKEINVKLGLTILLITHEMDVVKGICDEVAIISDGRLIEQGEVAWFFSNAKTQLARDFIHSTIHLEVPQEYQDRMSAERVPGSYPLVKLGFTGSTVDTPLISEASRRFNIDISILSADIEYAGGVKFGFLLAELFGDEAQCEATQQFLIDNHIQLEVMGYVRSHD
>NZ_CP038513.1|WP_162902018.1|1862838_1863294_+|hypothetical-protein
MRFQQIKDLLLYLEQVHHQLGLGYGRLMAQVDGERSRLLLAYLQQREEAAKSQLDDYLSELGEGVKETWLERGFSEDLLPGIRRLSLPATAQTQDIVQLVCRQEEKLIGELSHLARECPTEETVRLLGGLAEQEQARLTRLVHGAHRLDDL
>NZ_CP038513.1|WP_011704857.1|1863400_1864159_-|ROK-family-protein
MQMLGVDIGGSGIKGCLVDTATGELIGERHRLVTPQPATPAAVAHTLKALVEHFDWKGPVGCGFPATIHNGIAKSAANIDKSWIETDVAHLFADVTGQPCHVLNDADAAGLAEMRFGTGKDRSKGVIILVTVGTGIGTAVFVNGQLLPNTELGHLMLEGMVAEHYCSDAVRKREDLSWGRWGKRFNKYLARLEFLFSPDLFILGGGSAAKLDKFIDKIETRAPLVAAANLNQAGIIGAALHAAELTAARQSA
>NZ_CP038513.1|WP_162902017.1|1864242_1865370_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MTTTELHQLAQDIKLWASELGFDQAGITDTDLTLEEPRLQAWLDAGHHGSMDYMARHGMMRARPHELLPGTLRVLSVRMNYLPFEAGFAATLRDPTLGYISRYALGRDYHKLLRSRLKQLGERIEQRCEALGWRPFVDSAPILERPLAAKAGLGWVGKHSLLLNESAGSFFFLGELLLSLPLPLDAPVEKEQCGKCVACINICPTGAIIAPYVVDGRRCISYLTIENDGPIPEEFRPLMGNRIYGCDDCQLICPWNRYANASPEPDFSPRPNLHRPPLLTLWGWSESEFLKHTEGSPIRRIGYQRWRRNLAVALGNGPASPQVMAALQQALAAAEPMVAEHIEWALATLAKRQQDDNKKTRLLIRCIEKGLPDHA
>NZ_CP038513.1|WP_171280187.1|1865544_1867056_+|NAD(P)H-hydrate-dehydratase
MVQIIGDAISGKEVRSLPQSLWRAEQIRALEREWAEREGLALYTLMERAGAALRTYATHHWPHSRCWWIFTGPGNNGGDGYVLARLAKQLGLEPQVIALRTPAELTGDARRAADEWLATGGTVVSAEAGELDRLPAPDLVVDALLGTGVHTRLSPLMTKIVATINGLQVPVLSVDLPSGLNADTGCAMGAVVRASRTLTFIGIKQGMLTADGVDCVGRLDCDPLGVSVPPGWQAAAERIDYPSLHTRLTPRQRSSHKGSHGKVLMVGGNAGMQGAIVLAARACLRAGAGLVRVCQHPDQLPASLYQAELMGSQGGDEERWASVRVVGPGLGRDEWGRHHFESFVNEQVPLVLDADGLNWLAQCPRHQDNWVLTPHPGEAARLLGCTIAEIAADRFAAAQRLQQRFGGVVLLKGAGTLIHDGKGIALCDEGNPGMASGGMGDLLSGIIAALLAQGWSAAEATRLGAVIHGEAADLAAADGERGMLASDLLPFIRRLVNPDTITS
>NZ_CP038513.1|WP_011704860.1|1867064_1867538_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MAKQLMMTLPDEAATVALGGRLAHACQQATTVFLHGSLGAGKTTLTRGWVQGLGHEGKVKSPTYTLVEPYELADWQLYHFDLYRLADPEELEFMGIRDYFGANTLCLVEWPEKGEGWLPAPDLDITLSYANEQREVLIEARTAIGEAILERLSSTCA
>NZ_CP038513.1|WP_118881827.1|1867528_1869094_+|N-acetylmuramoyl-L-alanine-amidase
MRLILVIALSLLALPSWANQLKSVRVWPSPDNTRVVLDMSSAPNYNYFTLTGPDRLVIDLKGASNVTNLARIENKSELVRKIRESSPLEKGGLRLVLDLSSTIKPVVFPLAPAGPYGHRLVIDLPYEEKASAAVQATPVGGKGKGVVIAIDPGHGGEDPGSIGPRRTYEKRVTLAVSQKLAALIDREPGMRAVLTRRGDYFVDLNKRSEIARKAKADLLVSVHADSFHNSTPRGASVWVLSTNRANREMGSWLEKQEKQGELLGGVGKVLAESDPNPYLAQTFLDLSMDKSRAEGYDVSRQILRSLGRVARLHKKAPEHASLAVLKAPDIPSVLVETGFISNHAEEQLLATASYQDQLARAIFEGIRNYYRAHPTKGAMLTGKGQASNKQAAVSRPAPASKPVAVSKPAAQPVQQVVTNRMPATEPNRSSDGGAPVSSVGGPSSGAGVIKPYVVAAKEPSAPVASVQTNDKANMLRHVVTRGQSLSRLAEKYGVSQARLVEINKLKSRDIQIGQVLYIPQK
>NZ_CP038513.1|WP_171280188.1|1869201_1871070_+|DNA-mismatch-repair-endonuclease-MutL
MPIRILPPILANQIAAGEVVERPSSVVKELVENSLDAGADRVEIDIDKGGAKLIRIRDNGGGVAKDELVLALSRHATSKVATLDDLEGINSLGFRGEALASISSVSRLTFTSRTAEQSEAWQAQAEGREMSVTVKPAAHPVGTTVEVVDLFFNTPARRKFMRSEKTEFAHIDELVRRIALSRFDVTLILRHNGKVVRQYKAANTVAEQERRLAAVCGSPFMHHALAVESEHSDVRLWGWLATPEGARPQNDLQYTYVNGRMMRDKLINHAIRQAYDELLPADRFAAYVLYIELDPRQVDVNVHPAKHEVRFHQARLIHDFIFQALFTALRQQGAASDEPLAETLVELPVSAPIEYPGQAPRAEWYGAEHNYRAPAREVREGSGAGRAGNYQPPEPPSREAMRGMGSLLTTLPAVQGMPLAVAETAAVAAAVPAKAGTWRALTLVEQAYLLLERDNRLALLSLVRAERLLLRHWLLETWGQGLAAQPLLLPVSFKLPKNLVALVEQQDRLLKRMGLELKSGGRDTMILTRVPALLRQTDLVRLLPELLQLIESGSDSDAGQQAEVLCQWLVEQGISREKVYDFATANRLLTELVADFSDQLADVRMVRPLALASVLAEFADGH

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Crispr_ID: NZ_CP038513_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_9

1968713-1968873

Orphan

Consensus_repeat	Method
TCCATCAGCTGATCTTCGGTCTCCACGTGAGCGGGATCCCAGATGATGCAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_9

>merge|NZ_CP038513|9|1968713-1968873|CRISPRCasFinder
TCCATCAGCTGATCTTCGGTCTCCACGTGAGCGGGATCCCAGATGATGCAGTCCATGTAGAGCAGATGCTGATGCCGATGTTACTGCCTGTGCATCCGCACGAACTTTTCCATCAGCTGATCTTCGGTTTCCACGTGAGCGGGATCCCAGATGATGCAGTC

>NZ_CP038513|9|9|1968713-1968873|CRISPRCasFinder
TCCATCAGCTGATCTTCGGTCTCCACGTGAGCGGGATCCCAGATGATGCAGTC	CATGTAGAGCAGATGCTGATGCCGATGTTACTGCCTGTGCATCCGCACGAACTTT
TCCATCAGCTGATCTTCGGTTTCCACGTGAGCGGGATCCCAGATGATGCAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_017408770.1\|1967529_1968603_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP038513.1\|WP_171280207.1\|1976879_1979048_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP038513.1\|WP_171280206.1\|1973180_1974413_+\|cysteine-desulfurase-like-protein	unknown	unknown	gnl\|CDD\|273906
NZ_CP038513.1\|WP_029301667.1\|1964538_1965393_-\|Tim44-domain-containing-protein	unknown	unknown	gnl\|CDD\|226830
NZ_CP038513.1\|WP_011704959.1\|1974466_1975528_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP038513.1\|WP_101614990.1\|1958876_1959746_-\|tetratricopeptide-repeat-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_043159586.1\|1957380_1958787_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP038513.1\|WP_011704942.1\|1960748_1962587_-\|5'-nucleotidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|211667
NZ_CP038513.1\|WP_017408769.1\|1969042_1970404_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	unknown	unknown	gnl\|CDD\|237969
NZ_CP038513.1\|WP_029301656.1\|1976019_1976823_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP038513.1\|WP_171280203.1\|1962819_1964361_-\|cyclic-diguanylate-phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP038513.1\|WP_011704960.1\|1975538_1976009_-\|chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237400
NZ_CP038513.1\|WP_171280208.1\|1979708_1981631_-\|MCP-four-helix-bundle-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP038513.1\|WP_171280205.1\|1972121_1972394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_016349725.1\|1960320_1960662_-\|DUF2956-domain-containing-protein	unknown	unknown	gnl\|CDD\|378579
NZ_CP038513.1\|WP_016349735.1\|1979123_1979696_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NZ_CP038513.1\|WP_171280204.1\|1970637_1971375_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP038513.1\|WP_005303968.1\|1959859_1960195_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_011704938.1\|1956422_1957229_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|236791
NZ_CP038513.1\|WP_011704946.1\|1965825_1967220_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181562

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_017408770.1\|1967529_1968603_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP038513.1\|WP_171280207.1\|1976879_1979048_-\|PAS-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.19773e-58
NZ_CP038513.1\|WP_029301667.1\|1964538_1965393_-\|Tim44-domain-containing-protein	gnl\|CDD\|226830	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown].	1.25151e-38
NZ_CP038513.1\|WP_011704959.1\|1974466_1975528_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP038513.1\|WP_011704942.1\|1960748_1962587_-\|5'-nucleotidase-C-terminal-domain-containing-protein	gnl\|CDD\|211667	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	6.72369e-91
NZ_CP038513.1\|WP_043159586.1\|1957380_1958787_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP038513.1\|WP_171280206.1\|1973180_1974413_+\|cysteine-desulfurase-like-protein	gnl\|CDD\|273906	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. [Unknown function, Enzymes of unknown specificity].	2.75357e-153
NZ_CP038513.1\|WP_017408769.1\|1969042_1970404_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	0
NZ_CP038513.1\|WP_029301656.1\|1976019_1976823_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.74852e-87
NZ_CP038513.1\|WP_171280203.1\|1962819_1964361_-\|cyclic-diguanylate-phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.99013e-91
NZ_CP038513.1\|WP_011704960.1\|1975538_1976009_-\|chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237400	PRK13498, PRK13498, chemoreceptor glutamine deamidase CheD; Provisional.	1.15852e-98
NZ_CP038513.1\|WP_171280208.1\|1979708_1981631_-\|MCP-four-helix-bundle-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.39499e-56
NZ_CP038513.1\|WP_016349725.1\|1960320_1960662_-\|DUF2956-domain-containing-protein	gnl\|CDD\|378579	pfam11169, DUF2956, Protein of unknown function (DUF2956). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.44117e-46
NZ_CP038513.1\|WP_016349735.1\|1979123_1979696_-\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	9.19326e-44
NZ_CP038513.1\|WP_171280204.1\|1970637_1971375_-\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	3.12857e-43
NZ_CP038513.1\|WP_011704938.1\|1956422_1957229_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|236791	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional.	5.62168e-81
NZ_CP038513.1\|WP_011704946.1\|1965825_1967220_+\|replicative-DNA-helicase	gnl\|CDD\|181562	PRK08840, PRK08840, replicative DNA helicase; Provisional.	0

>NZ_CP038513.1|WP_017408770.1|1967529_1968603_+|alanine-racemase
MKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLKLDTGMHRLGVRADEMPAFIERLAKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSQLTAPLLGERAMANSAGILAWPDSHCDWIRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV
>NZ_CP038513.1|WP_011704946.1|1965825_1967220_+|replicative-DNA-helicase
MAEQVTAKKDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQEELERSEQLEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSGDLLDLAESKVFKIAEQRSSANEGPQPLKLILEQTVDKIEELFKTPHNGVTGVSSGYGDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHAALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKGKMYIDDASGLTPTDVRSRARRIAREHGGLSMIMIDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAGPAFDDDY
>NZ_CP038513.1|WP_029301667.1|1964538_1965393_-|Tim44-domain-containing-protein
MKKMLTLFAVILAIGLGAPIAEAKKFGGGKSFGKSYKTAPAQPAAKPVDTKNPTVGAQAPKKGGMMGGLLGGLLAGGLFAYLLGSGAFEGLQGMDFLLIALLALGAVFLIRTLRKGKMAAPQQQTAYAGYQPPQSAAPQQFEQNHSAPQATGFADSDVPFRLPPGFDMNGFLAGARDHYRTLQEAWNKNDLEKVREYVSPELFEQLKAERAELSGEQHTEVMYVDTQLVRADYGSDWAQVSVRFSGRYMDRQEQVEEDIKEVWHLERNLAKDNAPWHIVGIEQL
>NZ_CP038513.1|WP_171280203.1|1962819_1964361_-|cyclic-diguanylate-phosphodiesterase
MALPFLRRSNMPRLLASLLCCATLILISLVTLYWQTWSMTRQQAQTAAERAMTQIDSALHHSTLAAKAALPLASRPCREVARELRVLVATSPYVRSVNLSRNGRLYCSSIFDEIDLKDRLQNSQHELLRLEAVTQLGRKPSLLFYHLSEGDHAVVVAINPYHLSKPLQWHLAGPHSWVQIGEQWLDLQGKVHDGQPPRLRGFNYRLDSATFGYSLNQGFPLSAVLAMTLQKQGSMVLLILALGGLAGLATYRWWSHISTPTQELRRAIIKQEFVPYLQPIVVSQSGQLHGCEVLMRWQHHRQGLIRPDLFIPLAEESGLIILMTQTLMQQVRLQFAPHEAALPPRFHFSFNICARHCQQLSLLDDCRSFLAAFTANPITLVLELTERELITPNHLTERLFEELRQMGVRIGLDDFGTGHSSLTYLQQFHVDYLKIDQSFVAMIGTNALSRHILDSTISLATRLGLQTIAEGVETQEQADFLVERQVDYLQGYLYGRPLTPQQFLQQLSPTPAP
>NZ_CP038513.1|WP_011704942.1|1960748_1962587_-|5'-nucleotidase-C-terminal-domain-containing-protein
MKKTLLAVTVSITLFGLTACNSENSSKEHIPLDLTIAHINDTHAHLDPTENALAIQPTGQELFKFNAKLGGYPRLKFKLDELRSQAANEGRNFMVLNGGDAFQGTLYFTQFKGEEESRLLSDMGIDAMVLGNHEFDLGNQAIKDFVSRVNFPVLASNMVKSSSATLKDSENIHEYVIKEVNGESVGIFGLVLENMHDISSPDTDTKFLPMIETAQKMVDTLKSKGANKIIMVTHIGLQNDQAVAKAVNGIDLIVGGHSQTFLGDITELNSIGYTAHNQNPADDNTYAQIVSNPDGGKTCIVQAGEWAKGYGLVNVSLSKEGQLTKCEGRNTLMTGDDFTKEVAKKKVPLSGTEQTNVVDFINKSPVIEIVPENTAMRDVIDTEYKPAVAELEAKIIADVPTKLTHVRVPTTPDGAGLIDPLVAESLYWKLNKLNTKVDFTIQNAGGVRADVNAGPLSVGYVMGTLLPFGNKIAAFNLKGKDVRATLEYAVDYSIGLETGIAASSGAFPYVGHLSYTYDGKLAKGSRITKLELLDANGQWQPLDDEKVYRVGANTYIASGKDGYNGLLKREELPNKGDYVDSGVGENEMFMEYAESQGTLNPLPYATVTYYKP
>NZ_CP038513.1|WP_016349725.1|1960320_1960662_-|DUF2956-domain-containing-protein
MAKYDKISPETQQEAMKIARANQKPGQTKEQTQLIAQGIQKGIDEYKKQMKVRAREASRQKKLQAKAKQSHAAPQDEEPDDIVELVEVSRQHPLPWLLLAISWLGFAAWFWLR
>NZ_CP038513.1|WP_005303968.1|1959859_1960195_-|hypothetical-protein
MNPAPLYLLAPLVLFIVTLLLYRISPLRAVAAGSARWFILPAFTLFILLIIINGAADPSLRNPAFHWLMPGLGFALSLFPALPKALVPRLAIKEGAFAALGLMLMSLAMVY
>NZ_CP038513.1|WP_101614990.1|1958876_1959746_-|tetratricopeptide-repeat-protein
MDNPPDFMAQWDYRDPAASALRFHALLPEARAAADLQYELELLTQIARTHSLQRQFAQAHQLLDEIDPRLTDATPRARLRALLERGRTFNSAGDKASAKTLFEQAWQLGLKHKELYLAIDAAHMIAIAAPLEEQSRWHQLAMELAERSTDQKVRGWLATLYNNQGWTLFELGRFDEARGFQQKCLAWHEQHNNQAKAFIARWSLARLLRAQGQHEQALADLMLLKGDMAAAGVAEDGYLFEELGENALVLDEPAAAEYFSRAWFLLSQDRWLKANEAERLARLKLLAKL
>NZ_CP038513.1|WP_043159586.1|1957380_1958787_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MAESKPRVLLVEDTRSLAVVYEQYLAQDGYEVLRADCGQQALAQLLSSPPPVVLLDLELPDMSGMDILQQITEQQLPCSVVVITAHGSVDVAVEAMRLGAFDFLTKPFDGKRLCATARNALKHQQLSSLVAQYRENFERSSFAGFIGASMPMQAVYRIIESAAPSKATVFITGESGTGKEVCAEAIHQCSPRREQPFIALNCAAIPHDLMESEIFGHVKGSFTGAQGDRKGAASLADGGTLFLDEICEMDLDLQSKLLRFIQTGTLQRVGSGKLETVDVRFVCATNRDPLLEVKAGRFREDLYYRLHVIPLSLPPLRERGEDILLLARTLLQSYAKEENKRFKDFDAEAARVLLDYPWPGNVRELQNVVRNIVVLNDRELVSPDILPPPLNGSRASLLAAIPAAAATGSGAVVVANAPIRPLWLVEKETIEQAIASCDGNIPKAAALLEISPSTIYRKKQGWEEASLA
>NZ_CP038513.1|WP_011704938.1|1956422_1957229_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MNNFLKVSLLAAAVAVSLTACQKDEKTAANTAEVKAEASKPAEAPKAEAKSFEEQSGYAIGLSMGRYIANTLERQQELGIKLDNSVILKGVTDGLGKEAKMTDEEIQKVLQQYDAKINELTKAKADKDAVENQKKGEEYLAANAKKEGVKSTESGLQYQVEKMGTGAKPKATDIVKVHYTGTLTDGTKFDSSVDRGEPATFPLNQVIPGWTEGVQLMPVGSKFKFFLPSKLAYGEHGAGSIPANAVLVFDVELLAIEKPAADGDNAKK
>NZ_CP038513.1|WP_017408769.1|1969042_1970404_-|tRNA-5-hydroxyuridine-modification-protein-YegQ
MFKPELLSPAGSLKNMRYAYAYGADAVYAGQPRYSLRVRNNEFDHENLQLGINEAHALGKQFYVVANIQPHNSKLKTFIRDMRPVVEMKPDALIMSDPGLIMMMREAFPDMPIHLSVQANAVNWATVKFWHQMGLTRVILSRELSLDEIEEIRMQVPEMELEVFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNSCRWEYKVHEGKEDDVGQIVHRQEPIAIRPDNTLGLGKPTDALVLLEESNRPGEYMSAFEDEHGTYIMNSKDLRAVEHVERLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAVAGRPFDRSLMGTLENLAHRGYTEGFLRRHNHSEYQNYDYGYSVSDTQQFVGEITGRNGDMVEVEVKNKFLVGNSLELMTPQGNLSFNLEQMQNRKGELIDTAPGNGHVVYVPVPKEVDVDYGILLRNLGERQDTRQPHSAA
>NZ_CP038513.1|WP_171280204.1|1970637_1971375_-|EAL-domain-containing-protein
MFAFQEEYPISDMANIAVADLAVPFYQPIIGRDHQVKGYEVLARRWEPAQQSYQGIDFASLSEEQSLHLDIVMLRAIMRDLPTLAQAGPYFLSINLNPTLNSPTYQNLLLLVLMQARKLGIEVWFEVLEQAPLLRQHRALIEVLRSHGAHIACDDFGTLECNFQRMLALPYEVIKLDRSLLLQASKTPHALRMLTGLVEYLQQLGMKVVCEGVETLQHIEIANRLGCDYQQGYAYAMPSPLSRWA
>NZ_CP038513.1|WP_171280205.1|1972121_1972394_-|hypothetical-protein
MFEIWDEEGQATGLSLPQLQQRLSSYRGEVMVRYTNRIGLPTTLFLTIDQGLAYQRFKADTPLLDWAWLAQAVQPEQRKQSLLPLEAVAP
>NZ_CP038513.1|WP_171280206.1|1973180_1974413_+|cysteine-desulfurase-like-protein
MQALDIAVLRGQFPALNQLVEGKAPIFFDGPGGAQVPHAVLTAMTDYLGHFNANLGGPFFSARVTEQQALRARQAVAALLGAERAEEIVFGANFTTLTFALSRALAREWQAGDEIIVSALDHYSNVSSWQQAAADRGVVVHQARVDVATGGLDYEHLFSLLGPKTRLVAVTAASNTTGTLVDIPRIADAVHGVGALLYVDAVHFAPHERIDVQAWDCDFLGCSAYKFFGPHLGILYGKHRHLAHFTPYKVEPAKNVAPYKWETGTQSWEALAGVEATVEYLASLSGLDGTEHELEVRLDLAFARSLAHERELSEHLLAKLAERPWFTLHGIHNSLGRTPTFALTSNRHTPAEMAEFLGQHQVCSWAGHFYALALVEQLGVSDGVLRIGCMHYNTSAEIDRLFALLDDMPH
>NZ_CP038513.1|WP_011704959.1|1974466_1975528_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MKQIKVMLVDDSAVVRQVLQAILEQEPDIKVIATASDPLFALEKLKKEWPDVIVLDVEMPRMDGITFLTKIMAEHPTPVVICSSLTEKGAETTLQAMAAGAVDIITKPTVGLKSFLQESAQELAMAVRAAAQANVRRLAKVPAPSVAPKLNADAIMPAASQHAMAQTTERIVAIGTSTGGTQALEAVLTTLPRVCPGIVIVQHMPEKFTASFAERLNSLCQIEVREAKSNDRVIPGLALIAPGGKHMLLKRSGAYYHVDVMDGPLINRHRPSVDVLFRSVAKFAGGNATGIIMTGMGDDGARGLREMLEAGANTFAQDEASCVVFGMPKEAIKLGAARHVLPLQDIHHAIVGR
>NZ_CP038513.1|WP_011704960.1|1975538_1976009_-|chemoreceptor-glutamine-deamidase-CheD
MREVSLQPGEFYFGQDDTIIRTHLGSCVAITMWHPEQKRGGMCHYMLPSRGHSTMSLDGRYADEAIQLFINEISKYPAPIHEYEVKLFGGGNMFIEQQTLNTMNVAIRNIKAAWQLTQHLGLTIKAHHLGHAGHRSLIFELANGNVWVRHHRLPHR
>NZ_CP038513.1|WP_029301656.1|1976019_1976823_-|protein-glutamate-O-methyltransferase-CheR
MYQTQLHDDEFAQFQRWIHQTAGIDLSPAKKALVASRLSKRLCHYELESYGDYFSLIMNNRGAELQVALDLLTTNETYFFREPKHFEFLGNKVLAQLPKERAVRIWSAASSSGEEPYSLAMTLADNLNHGSWEVIASDISTRVLEQARAGQYPIERAHNIPLPFLMKYCLKGVGFQEGTFIIDRKLREKVQFHHINLNQELPDIGLFDVILIRNVMIYFNRETKAQVLQRLVPRLRKGGYLIVSHAESLNGLPHGLQLVSPSIYLKP
>NZ_CP038513.1|WP_171280207.1|1976879_1979048_-|PAS-domain-containing-protein
MTQSFFGNLFGNGSAHTLLQEQLLQLIGATRSLQQGIRQGDQSAQLELGSLSGPLRELCQEFNTVLALLGERLSNTLATISANQTLYDENLRVRKALDGASTNVMIADTNLDIVYMNEAVLAMLGQAESDIRKDLPNFDVRQLMGKNIDTFHKDPSHQRSMLAKLNSTYRAQITVGGRIFSLIANPVFNDGGERLGSVVEWADRTKEIAIENEMKAASAAAKIAAAESLRVKKALDGASTNVMIADTDLNIIYMNESVKEMLSLAEADIRKELYNFNSATLMGANIDSFHKNPGHQRSMLAKLNNTYRTQILLGGRTFSLIANPVFGDDGERLGSVVEWSDRTKEVAIEREMSEIVQAVINGELHRRMDLTGKNGFFQTLGEGINRIAEVIDTSLNDVIRVVQSLARGDLTQQVEADYPGVFGTTKDSLNQTIVSLTNIVTEVRGASDNLSSAAEQVSATAQSISQSSSEQASSMEETSASIEQMSASINQNTDNAQVTDGMASKAAKEAVEGGEAVKLTVDAMKQIAKRIGIIDDIAYQTNLLALNAAIEAARAGDHGKGFAVVAAEVRKLAERSQVAAQEIGELASSSVDMAEKAGRLLDQMVPSINKTSDLVQEISAASAEQSTGVSQINIAMNQLSQVTQQNASCSEELAATAEEMSSQAEQLQLAMEFFTLEQHKHGTNQKAPARGSPRGRFMHEGNGQEGVGTTPRPHNDADFIRF
>NZ_CP038513.1|WP_016349735.1|1979123_1979696_-|chemotaxis-protein-CheW
MSMSTEVAVQPGTLAPDNQGDAQYLTFLINGEMFAINILGVKEIIEYGNITPIPMMPSFIRGVINLRGAVVSVVDLNARFGNAPSSITRRSCIVIIEGVHPDDPEHGNQDIGVVVDSVSEVLTIPCNEIEPPPSFGARIRADFISGMGKVNGKFVILINTEKVLSIDEMAQLSELTQQQERLLEQKPQTP
>NZ_CP038513.1|WP_171280208.1|1979708_1981631_-|MCP-four-helix-bundle-domain-containing-protein
MFKNSTIKLRLTILLCLLCALLLGVGALGLYNMQSSNKGLQRVYNDRVVPLKQLKTISDNYAVAIIDNVNKANAGLISAEEARQQIQHAQQQIKLEWQHYQATKLTEAEQKLSAEANSLFSAADRDITRLEAFLSTQRGVVTGMLNEFDGKLYSSIDPIGGKITELVSLQLDVAKSEYEQAQAWYDVMLLTMLAVVAAGMVAAAWFGIVLIRSIISPINQALQVANHLAEGNLDVTIDIGAHDEAGQLLLAMQNMVNKLTALINDIETLVTAAVEQGNFSYKIELNGRQGYIKRLSELLNRLSNVTDTSLNDVMRIATALSQGDLTQKIEQPYPGIFGQTKDGLNSTIEALTAIIEEVRNAADNLTNASNQVSTTAQSLSQATSEQAASVEETSASIEQMSASINQNTDNAKVTDNMASSAVLEATEGGRSVQQTVAAMQQIARKVSIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQIAAQEIGELSSSSVDTAEKAGSLLDKIVPSIRKTSDLVQEINAASGEQASAANQISLAMSQLNQVTQQNAASSEELAATAEEMSSQANELQQTMDFFSLENLSKPARIHESGHKGLPPRGKFVMPTQHPLHGNTAAQPQVDEADFVRF

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Crispr_ID: NZ_CP038513_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_11

2015201-2015441

Orphan

Consensus_repeat	Method
CGGCGCAGATCACCTCGTTGTCAGCCGACAATCGATGTTTGCCAGGGTTAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP038513_11

>merge|NZ_CP038513|11|2015201-2015441|PILER-CR
GGTGCAGATCACCTCGTTGTCAGCCGACAATCGATGTTTGCCAGGGTTAGATTTCCATTTCACGCTACCTGTAGCAGTTCCGGCCAGCGGGCACTCCGGCTCAGATCACCCCGTTGTCAGCCGACAATCGATGTTTGCCAGGGTTAGATTTCCATTTCACGCTACCTGTAGCAGTTCCGGCCAGCTGGCACTCCGGCGCAGATCACCTCGTTGTCAGCCGACAATCGATGTTTGCCAGGGT

>NZ_CP038513|11|2|2015201-2015441|PILER-CR
GGTGCAGATCACCTCGTTGTCAGCCGACAATCGATGTTTGCCAGGGTTAGA	TTTCCATTTCACGCTACCTGTAGCAGTTCCGGCCAGCGGGCACTCC
GGCTCAGATCACCCCGTTGTCAGCCGACAATCGATGTTTGCCAGGGTTAGA	TTTCCATTTCACGCTACCTGTAGCAGTTCCGGCCAGCTGGCACTCC
GGCGCAGATCACCTCGTTGTCAGCCGACAATCGATGTTTGCCAGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_000194037.1\|2024461_2025217_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP038513.1\|WP_118881765.1\|2005675_2006827_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NZ_CP038513.1\|WP_171280216.1\|2001549_2003487_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038513.1\|WP_099368947.1\|2018808_2019896_-\|IS3-like-element-ISKpn10-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP038513.1\|WP_001274811.1\|2022905_2024447_+\|IS21-like-element-ISAs29-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP038513.1\|WP_010676201.1\|2021596_2022019_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP038513.1\|WP_171280218.1\|2010935_2011964_+\|L-rhamnose/proton-symporter-RhaT	unknown	unknown	gnl\|CDD\|237401
NZ_CP038513.1\|WP_050490553.1\|2004632_2005460_-\|rhamnulose-1-phosphate-aldolase	unknown	unknown	gnl\|CDD\|179615
NZ_CP038513.1\|WP_087756365.1\|2022150_2022360_+\|antitoxin	unknown	unknown	gnl\|CDD\|226863
NZ_CP038513.1\|WP_113995764.1\|1999595_2001041_-\|outer-membrane-porin,-OprD-family	unknown	unknown	gnl\|CDD\|335381
NZ_CP038513.1\|WP_118881764.1\|2008061_2009546_+\|rhamnulokinase	unknown	unknown	gnl\|CDD\|198349
NZ_CP038513.1\|WP_171281212.1\|2019961_2020339_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_139127910.1\|2027173_2027647_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171280217.1\|2003606_2004503_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP038513.1\|WP_118882310.1\|2006935_2007781_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|184094
NZ_CP038513.1\|WP_171281213.1\|2028034_2029087_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP038513.1\|WP_029303765.1\|2011975_2012290_+\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|131674
NZ_CP038513.1\|WP_118881763.1\|2009542_2010802_+\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
NZ_CP038513.1\|WP_171280219.1\|2020321_2021593_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
NZ_CP038513.1\|WP_109422697.1\|2017501_2017777_-\|transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_118881765.1\|2005675_2006827_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_CP038513.1\|WP_171280216.1\|2001549_2003487_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.87332e-35
NZ_CP038513.1\|WP_099368947.1\|2018808_2019896_-\|IS3-like-element-ISKpn10-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.08414e-33
NZ_CP038513.1\|WP_001274811.1\|2022905_2024447_+\|IS21-like-element-ISAs29-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42101e-37
NZ_CP038513.1\|WP_010676201.1\|2021596_2022019_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	2.12441e-59
NZ_CP038513.1\|WP_171280218.1\|2010935_2011964_+\|L-rhamnose/proton-symporter-RhaT	gnl\|CDD\|237401	PRK13499, PRK13499, L-rhamnose/proton symporter RhaT.	2.44785e-149
NZ_CP038513.1\|WP_050490553.1\|2004632_2005460_-\|rhamnulose-1-phosphate-aldolase	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	4.8759e-103
NZ_CP038513.1\|WP_087756365.1\|2022150_2022360_+\|antitoxin	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	7.57648e-20
NZ_CP038513.1\|WP_113995764.1\|1999595_2001041_-\|outer-membrane-porin,-OprD-family	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	1.66827e-17
NZ_CP038513.1\|WP_118881764.1\|2008061_2009546_+\|rhamnulokinase	gnl\|CDD\|198349	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases.	0
NZ_CP038513.1\|WP_171281213.1\|2028034_2029087_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.12654e-62
NZ_CP038513.1\|WP_171280217.1\|2003606_2004503_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	7.35452e-15
NZ_CP038513.1\|WP_118882310.1\|2006935_2007781_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|184094	PRK13503, PRK13503, HTH-type transcriptional activator RhaS.	7.70265e-77
NZ_CP038513.1\|WP_029303765.1\|2011975_2012290_+\|L-rhamnose-mutarotase	gnl\|CDD\|131674	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp. [Energy metabolism, Sugars].	1.17404e-52
NZ_CP038513.1\|WP_000194037.1\|2024461_2025217_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.96716e-68
NZ_CP038513.1\|WP_171280219.1\|2020321_2021593_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NZ_CP038513.1\|WP_118881763.1\|2009542_2010802_+\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0

>NZ_CP038513.1|WP_029303765.1|2011975_2012290_+|L-rhamnose-mutarotase
MIRKAFLMSVHPGCEVEYRRRHDELWPELAATLKAHGASNYSIFLHPESCQLFGYVEIEDEGRWCEVASTAICQQWWAYMQEIMPSHPDNSPISMELSLLFHLA
>NZ_CP038513.1|WP_171280218.1|2010935_2011964_+|L-rhamnose/proton-symporter-RhaT
MSAIVSGIGWHLVGAASAASFYAPLSKVQRWSWETTWAFAGLFSWILLPWLVTSTLIDDFGAFYSVVDSKAFWGMFLFGAMWGIGNVNYGLTMRYLGMSLGIGIAIGVTLVMGTLMPPILRGEFVQLLTTASGQITLLGVFVALIGIGIVTWAGHQKEIALGTTTQEFNLKKGLLLAVMCGIFSSGFAFGLEAAAPIRQASLALGINPLYAVLPSYGIIMGGGAIVNMGYCFIRLATRSELSLRNDLAQPARSLLLNGLLAAAGGIMWYLQFFFYAWGEASIPEHLSFVNWMLHMSGYVLCGGIVGLLMAEWKGVGTRPVRILCIGMLVIVGAANLVGMGMA
>NZ_CP038513.1|WP_118881763.1|2009542_2010802_+|L-rhamnose-isomerase
MNPNIETAFSLAKQQYAALGVDVDQALTTLATIPVSMHCWQGDDVGGFEADAGALTGGIQATGNYPGKARDAIELRRDLDLAMSLIPGAKRLNLHAIYLEAESPVARDKIEPKHFANWVRWAKERGVGLDFNPSCFSHPLSADGMTLSHPDPEIRRFWIDHCKASRRISASFGQALGTPSVMNIWIPDGMKDLPADRLGPRQRLMAALDEVLAERIDEAHHIDAVESKLFGIGAESYTVGSNEFYLGYASSRDIALCLDAGHFHPTEVISDKISAASLFVRHLLLHVSRPVRWDSDHVVLLDDETQAIANEIIRNELLERVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPIEMLRQAECKGDYSTRLALMEETRSLPWQAVWDYACAREGVAVGVDWLDAVKEYEVQELLTRR
>NZ_CP038513.1|WP_118881764.1|2008061_2009546_+|rhamnulokinase
MSVNIAAVDLGASSGRVIWASYDPVNENITMQEMHRFTNGMVHSNGHDCWEPERLFSNILLGLEKIDDAGIVLDAVGIDSWGVDFVLLDAAGQMLGDAVAYRDARTDGVPERVWQQLSRDEIYRRSGIQFLKFNSLYQIRALLDEKPAWLDKVTRLLLIPDYLHYRLTGQFSCEFTNASTSQLVNARSRDWDPELIALIGEGGKWLQPIAAPGTRLGHWISPSGRQVSVILPATHDTGSAIVATPLSGRGAAYISSGTWSLVGVERNAPLTDAAALAANLTNEGGVEGTWRLLKNVMGLWLVQGLQALWPQLGFAELVAQAEQAEPFAYLIHPNDERFLNPACMRSAIQHFCQETGQGTPQTPGELVRCVLDSLALCYDQVLRELENVTGESITRLHIVGGGSQNRLLNQLCADICQCTVLTGPVEASALGNIGWQLKGLGLLQDLTDVRRLIRHNTRIDTLHPHEVPQLDYYRTRFAALCAHTHSDTLIEEVV
>NZ_CP038513.1|WP_118882310.1|2006935_2007781_-|helix-turn-helix-domain-containing-protein
MKIATMFRLQQTDFFDHNKVINVLPRAPQEPFPEHCHSFHELVLIKSGCAIHITDGSAVHIRRGSVFYLREDDAHMFDQMKDLCLTNVLFRPEGFHFADGLQTLLQTSCHPTSGGLQLPPSLQPQSELLLNQIAAENSRRDACSPVMIEALFSQLAVLLWRTHQQGGEAGGKGEGDQERLLALINYLDENYQEEIDWSELSERFSIPLRTLNRKIQEHTGLTPNNYLGRVRLCHASWLLSHTNKSVTDIAFESGFNDGNYFSSKFHHAFELTPLQYRKRHK
>NZ_CP038513.1|WP_118881765.1|2005675_2006827_-|iron-containing-alcohol-dehydrogenase
MAFALCLPQLSLSGSGAIYDLVQLMCNQPARRPLIVTERALISFGLLDGLLGALRDQGFTPLVYDGVEPNPTDKVASAALASWQAGQCDALIGFGGGSAMDTAKAVRALVANPGKQIHDFEGIGKVVHTGPFMACISTTSGTAAEVTSNAVITDTRRKVKMVIIDPALIPTVAVNDPTLMVGLPPAVTAATGMDALTHAIEAYVSIGAHVLTDHSALAAIRVIAEYLPQAVANGQDLTAREMMAHGQFLAGMAFNSAGLGYVHSLAHQPGATHNLPHGVCNAILLPVVCEFNLAVREDRFADIAAAMGVDTSAMSKAGAAVAAIQAIRALSARVGIPSGLHQLGIQPGDLAGWIDAAAADPCSGCAPRVASKAELLALYQAAF
>NZ_CP038513.1|WP_050490553.1|2004632_2005460_-|rhamnulose-1-phosphate-aldolase
MQQIEFNAAVRAEIEKVVEVSAYLWQREWAERNGGNISVDLTDIFGPAPADLSQYPHCPLSMVGGEGAFPADSAGHVFFVKGTGERIRELRSPELAGCILRIDDEARGYHILWGGRGLHDYQPTSEFISHVEIVMDKQRRGAADRCVVHTHPLELIALSHHPRYARDSAAYTHACWKMLPEVRAFVPRGIGVVPYCMPGSQTMADGTTAALRQHDVAIWEKHGAVATGTDALMAFDFVDVANKGAKLHLMCLASGFEPEGVSPEAMLALQETFGL
>NZ_CP038513.1|WP_171280217.1|2003606_2004503_-|DMT-family-transporter
MSAASWWDKSTGLALLTIVLWASLAALTSRVTSVSPLVLVGLVLFFCGAGALPFWRQWRARPVNWLVTISALLLYHLLLFMSFRHAPVLEANLINYLWPLCIILFTPLLLPGHPLHGRHLLAGALGLAGSVLVMVNGELQLQQAYLPGYLLALGAAIVWGAYSVLSRRLPPAPAVMTAAACLPAGLLALLLAWLLEGPLPVARIPTGDWGLIIGLALGPMGAAFVTWYLALRDGDPRRIGALAYLTPLLSTLLLVLLNGEQLTPRHLVAGALIIGGALLGMLGKPPARQQQEAPAPLQ
>NZ_CP038513.1|WP_171280216.1|2001549_2003487_-|HAMP-domain-containing-protein
MKIAHYASLSSLALLLVAAVQVGALWHGWQQLNQAEQAQYQHERLQQRLTGTLQGTLRDYLASGDPLRLTEAEAVRKQALAQLAQQDVALTAQLRTLLEQMGARIDSDYLAAGKLSGNSQWLLQNAENELTDQARALLRYGQQGAMGSDPASAERYRQLSGDLLAALPGLAHLRQNYMEQASPKLLEGLQFELAALQKQAEQLAALPPLGLFEAPPADEFTLGEPERKELGDLPKAELLSLLKRYPQELENSRKALQQQQAGRLAVQQDIGQMLQATGHIGSELAAARQAVNQRLAAILGSLALCLVLVALLFALVQRRWLVRPLLRLRTAFLQLDETGQAETLPEGRERNELADIVASYNRLILRLQQDQQQKEGQLSAVSQSLQGMVNQVQEIHHSTRTTEQAVDESDLMMSELNQLAGEVHQVAAEIAQHAQHNEHSMSQSEQLVGGMLQATAQTGLAIDESGGALAQLKRSVEDVTAIVDVIGHISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLSADTQRSLGQITEILTRLTQAGEQLGTVLARITAEAAAQRQQAEQLRQTTQAVREMARSTAVIALQGADNAKSQEHKLASFADLIGRISQHARQGSRLSVQVSEHIHHQASQIPRILGHQA
>NZ_CP038513.1|WP_113995764.1|1999595_2001041_-|outer-membrane-porin,-OprD-family
MEKVIFKRAALSAAIVAAMLAPGMVLAADEAGPTYAAAASKFYEEGKLNGGLFYFQRDRQRIDGDPTAKNKEGKYQSNLSHATTQASLNFNSGYAWDVVGIDVGGFGAYDLAVTENHPVNQENEFSFAGNKWGENYKDGSPEGGFSLANASLKFKALDGALTAKGGLTQLYVPGVIGVNWSYQPGTYRGGQIEGNFGGLYLTYAIADEYKSPWYKETQKFSRAKAWMDPFADENVIDYIQGVAARYTFENGTAITGSYGNSENYMDSYHFKLAHKFDVLNGLSTSYQFYGSDTKTYQKGGADIETYDGLAWQQALTAAWGMGPYGFRLEGLWTKAEGNEGNYLPRLTRGYGNSQGANEIWWDSRSDWNANNEKALYFGVTRSLDDLVGAPGWSVGVSGAYGWDIQKGDGTKATNGEDTEWAANFDVMYTVQDGKLKGTLFKLHYTDYNNDISQGGGWTEYPNIFASEKDVKFHIIMPFTIL
>NZ_CP038513.1|WP_109422697.1|2017501_2017777_-|transcriptional-regulator
MARKLDDILTTEMPDVVTQAREKADLMRLEIHLTQLREMLTQAGTEPMICDQDLSIEDVTLMDLKRWVEAAGGKLQLNVEMPNGSQISFAV
>NZ_CP038513.1|WP_099368947.1|2018808_2019896_-|IS3-like-element-ISKpn10-family-transposase
MKTSRFSDTQIIAILKQAEAGAPVPELCREHGISTTTFYKWRSKFGGMDASLMARLKELEDENRRLKKMYAEERLKAEIITEAMGKKVVTPSARREMATKAVTHYAISIRLACRIFKVSESCYRYQPVLVDENQEIADWLLRITASQRNWGFGLCFLYLRNVQGFGWNHKRVYRIYRALELNLRIKPRKRLVRAKPEPLAVPDQPNQCWSMDFMHDQLSDGRSVRLFNVIDDFNREALCIEVDFSLPASRVKRALEQVITWRGKPAIIRCDNGPEYISEELKRWAKQEGITLGYIQPGNPQQNAYIERFNRTVRYDWLGHYLFESLNELQEFATNWLWVYNHERPNMALGGYTPKQRLAQAA
>NZ_CP038513.1|WP_171281212.1|2019961_2020339_+|hypothetical-protein
MTQPSRGLWQASYLGQKVTYSEARFGPMAETLAHRALLKLQAGNFDPVSDDLQFKQSWRMVDAARQLGLSLGQLRQWMLTGMLNGHVIKPPMRDVKGVDRITGCELMMAQERLAECKSGLSLCNG
>NZ_CP038513.1|WP_171280219.1|2020321_2021593_-|translesion-error-prone-DNA-polymerase-V-subunit-UmuC
MPNAIALVDVNNFYASCERLFRPDLKGRPIVVLSNNDGCVVARSAEAKALGIKMGVPYFQIRQFFEAVGGVWFSSNYALYGDMSQRVMTTLEGMVPTVEVYSVDEAFIELNESWAGDLTAYGRQIRERIQQWTGLTVGVGIGPTKTLAKLANYAAKKWPATGGVVDLRDEARRARLMAITPVGEIWGIGRKLTTRLEAHGINSVADLVAVDGKNLRHRYGVVVERTVLELRGYPCASLEQDTQAKQQIICSRSFGERITHMNSMHQALAGYMERAAEKLRAEGMCCRHVTLFIRTSPFNDKEPYYGNHVSTTLAVPTNDTRELLGVIHSLLSHIWRDGHRYQKGGVMLADFTPIGSQQGDLFDHHQHKPRSQDLMQMIDRINQGRLGKIHFGSCGRDNSDWMMKREKLSPRYTTALDELPIAK
>NZ_CP038513.1|WP_010676201.1|2021596_2022019_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MFAIPHPTPDALELPLFLSPVVCGFPSPAQDYIEQTIDLNQICIEHPAATFYVRASGHSMVEKGINDGDLLIVDRALKARHGAIVLACLDGEFTVKQLQERPFPALLPANPDFQPIHLLDGQELEIFGVVTYVLHKTKLG
>NZ_CP038513.1|WP_087756365.1|2022150_2022360_+|antitoxin
MESTVFRCGRGQGVYLPEAVALPDEVTHVEIVVVGRTRIITPVGESWDRWFDEPCMSADFMAEREQPTA
>NZ_CP038513.1|WP_001274811.1|2022905_2024447_+|IS21-like-element-ISAs29-family-transposase
MSAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELDDGRLAALFYPQADTTISARHVVPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQFCDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPTTGEVRQAQVFVAVLGASNYTFAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEHYQVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERPFKQLPGNRRDAFEQLDRPALGPLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQQLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPERHSKQQRWTPGRLKQWAADIGPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKSVLTSGRDQLPASPLSYPELPQEHENIRGPQSFH
>NZ_CP038513.1|WP_000194037.1|2024461_2025217_+|ATP-binding-protein
MTQQTLTRLRHLKLTGMADAVQQQLEQASTYEGLPFIERLSLLVEHEQLSREQRKQARLVKQARLKLQATVQEVDYQSARNLERSQVANLAQGEWLRRGQNLLITGPCGCGKTYLACALGYQACQQGHSTRYYRLPRLLLELSQAKVDGSYARLLGQLARIELLILDDWGLEAVNAEQRNALLEIMDDRYGKYSTVVVSQLPTEEWYASLGDNTLADAILDRLMHNAHRLSLKGESMRKRRSELTQSEHSS
>NZ_CP038513.1|WP_139127910.1|2027173_2027647_+|hypothetical-protein
MRKVNDDICAIDIETHNEALELLRGRFNLNKIIRPLDKHVVLKNYNHIHELHDFPAFVILNHDIAESVASALDNVSIKMYYDDIVASLGDDENDRAVTYDQVLSGWAQSNMPSYYRPGNDYQSAEEFLAEMGSENVNDSTILKNFKMAVDVLLKAKP
>NZ_CP038513.1|WP_171281213.1|2028034_2029087_-|Fic-family-protein
MDTNLGLLQGLHLSAHSTTLAHQTHALDTLLANVVASSAIENQQLNSQSLRASLACRLGILEQSPYPTSVRSEGLAAMIVDAINSDEQLTLERLLQWHRWLFPTDDRRSHQIRVGQLRGDEPMQVISGARDRLTVHFEAPPREGLEEALATFVDWFRSSLDEPCLDPFLRAAICHLWFVTLHPFDDGNGRIARALTDLALSQADNQSISLYAMSTVIFERRADYYRALEQTQRGGLDVTEWLVWFLDTLNVTLEQAQESCTHALARNRFWLLHASDQLCPEQVMILNHLLDGYTQDGLPYISASQYQKIAQVSKSTATRHLTDLLEKNCLEKGASGGGRSTRYRLKLTNH

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Crispr_ID: NZ_CP038513_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_12

2016891-2017131

Orphan

Consensus_repeat	Method
TTCGCTGGGGTCAGATTTCCATTTCACGATACCTGTAGCAGTTCGGGCCAGCGGGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP038513_12

>merge|NZ_CP038513|12|2016891-2017131|PILER-CR
GGGGCGGAATTCCATTTCACGATACCTGTAGCAGTTCGGGCCAGCGGGTACTCTGGTGCAGATCAGCCCGTTGTCAGCCGACAATCGAGTTCGCTGGGGTCAGATTTCCATTTCACGATACCTGTAGCAGTTCGGGCCAGCGGGCACTCCGGCTCAGATCACCCCGTTGTCAGCCGACAATCGAGTTCGCTGGGGTCAGATTTCCATTTCACGATACCTGTAGCAGTTCGGGCCAGCGGGC

>NZ_CP038513|12|3|2016891-2017131|PILER-CR
GGGGCGGAATTCCATTTCACGATACCTGTAGCAGTTCGGGCCAGCGGGTACTCTGG	TGCAGATCAGCCCGTTGTCAGCCGACAATCGAGTTCGCTGG
GGTCAGATTTCCATTTCACGATACCTGTAGCAGTTCGGGCCAGCGGGCACTCCGGC	TCAGATCACCCCGTTGTCAGCCGACAATCGAGTTCGCTGG
GGTCAGATTTCCATTTCACGATACCTGTAGCAGTTCGGGCCAGCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_000194037.1\|2024461_2025217_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP038513.1\|WP_118881765.1\|2005675_2006827_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NZ_CP038513.1\|WP_171280216.1\|2001549_2003487_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038513.1\|WP_099368947.1\|2018808_2019896_-\|IS3-like-element-ISKpn10-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP038513.1\|WP_001274811.1\|2022905_2024447_+\|IS21-like-element-ISAs29-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP038513.1\|WP_010676201.1\|2021596_2022019_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP038513.1\|WP_171280218.1\|2010935_2011964_+\|L-rhamnose/proton-symporter-RhaT	unknown	unknown	gnl\|CDD\|237401
NZ_CP038513.1\|WP_050490553.1\|2004632_2005460_-\|rhamnulose-1-phosphate-aldolase	unknown	unknown	gnl\|CDD\|179615
NZ_CP038513.1\|WP_087756365.1\|2022150_2022360_+\|antitoxin	unknown	unknown	gnl\|CDD\|226863
NZ_CP038513.1\|WP_113995764.1\|1999595_2001041_-\|outer-membrane-porin,-OprD-family	unknown	unknown	gnl\|CDD\|335381
NZ_CP038513.1\|WP_118881764.1\|2008061_2009546_+\|rhamnulokinase	unknown	unknown	gnl\|CDD\|198349
NZ_CP038513.1\|WP_171281212.1\|2019961_2020339_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_139127910.1\|2027173_2027647_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171280217.1\|2003606_2004503_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP038513.1\|WP_118882310.1\|2006935_2007781_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|184094
NZ_CP038513.1\|WP_171281213.1\|2028034_2029087_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP038513.1\|WP_029303765.1\|2011975_2012290_+\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|131674
NZ_CP038513.1\|WP_118881763.1\|2009542_2010802_+\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
NZ_CP038513.1\|WP_171280219.1\|2020321_2021593_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
NZ_CP038513.1\|WP_109422697.1\|2017501_2017777_-\|transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_118881765.1\|2005675_2006827_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_CP038513.1\|WP_171280216.1\|2001549_2003487_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.87332e-35
NZ_CP038513.1\|WP_099368947.1\|2018808_2019896_-\|IS3-like-element-ISKpn10-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.08414e-33
NZ_CP038513.1\|WP_001274811.1\|2022905_2024447_+\|IS21-like-element-ISAs29-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42101e-37
NZ_CP038513.1\|WP_010676201.1\|2021596_2022019_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	2.12441e-59
NZ_CP038513.1\|WP_171280218.1\|2010935_2011964_+\|L-rhamnose/proton-symporter-RhaT	gnl\|CDD\|237401	PRK13499, PRK13499, L-rhamnose/proton symporter RhaT.	2.44785e-149
NZ_CP038513.1\|WP_050490553.1\|2004632_2005460_-\|rhamnulose-1-phosphate-aldolase	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	4.8759e-103
NZ_CP038513.1\|WP_087756365.1\|2022150_2022360_+\|antitoxin	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	7.57648e-20
NZ_CP038513.1\|WP_113995764.1\|1999595_2001041_-\|outer-membrane-porin,-OprD-family	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	1.66827e-17
NZ_CP038513.1\|WP_118881764.1\|2008061_2009546_+\|rhamnulokinase	gnl\|CDD\|198349	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases.	0
NZ_CP038513.1\|WP_171281213.1\|2028034_2029087_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.12654e-62
NZ_CP038513.1\|WP_171280217.1\|2003606_2004503_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	7.35452e-15
NZ_CP038513.1\|WP_118882310.1\|2006935_2007781_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|184094	PRK13503, PRK13503, HTH-type transcriptional activator RhaS.	7.70265e-77
NZ_CP038513.1\|WP_029303765.1\|2011975_2012290_+\|L-rhamnose-mutarotase	gnl\|CDD\|131674	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp. [Energy metabolism, Sugars].	1.17404e-52
NZ_CP038513.1\|WP_000194037.1\|2024461_2025217_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.96716e-68
NZ_CP038513.1\|WP_171280219.1\|2020321_2021593_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NZ_CP038513.1\|WP_118881763.1\|2009542_2010802_+\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0

>NZ_CP038513.1|WP_029303765.1|2011975_2012290_+|L-rhamnose-mutarotase
MIRKAFLMSVHPGCEVEYRRRHDELWPELAATLKAHGASNYSIFLHPESCQLFGYVEIEDEGRWCEVASTAICQQWWAYMQEIMPSHPDNSPISMELSLLFHLA
>NZ_CP038513.1|WP_171280218.1|2010935_2011964_+|L-rhamnose/proton-symporter-RhaT
MSAIVSGIGWHLVGAASAASFYAPLSKVQRWSWETTWAFAGLFSWILLPWLVTSTLIDDFGAFYSVVDSKAFWGMFLFGAMWGIGNVNYGLTMRYLGMSLGIGIAIGVTLVMGTLMPPILRGEFVQLLTTASGQITLLGVFVALIGIGIVTWAGHQKEIALGTTTQEFNLKKGLLLAVMCGIFSSGFAFGLEAAAPIRQASLALGINPLYAVLPSYGIIMGGGAIVNMGYCFIRLATRSELSLRNDLAQPARSLLLNGLLAAAGGIMWYLQFFFYAWGEASIPEHLSFVNWMLHMSGYVLCGGIVGLLMAEWKGVGTRPVRILCIGMLVIVGAANLVGMGMA
>NZ_CP038513.1|WP_118881763.1|2009542_2010802_+|L-rhamnose-isomerase
MNPNIETAFSLAKQQYAALGVDVDQALTTLATIPVSMHCWQGDDVGGFEADAGALTGGIQATGNYPGKARDAIELRRDLDLAMSLIPGAKRLNLHAIYLEAESPVARDKIEPKHFANWVRWAKERGVGLDFNPSCFSHPLSADGMTLSHPDPEIRRFWIDHCKASRRISASFGQALGTPSVMNIWIPDGMKDLPADRLGPRQRLMAALDEVLAERIDEAHHIDAVESKLFGIGAESYTVGSNEFYLGYASSRDIALCLDAGHFHPTEVISDKISAASLFVRHLLLHVSRPVRWDSDHVVLLDDETQAIANEIIRNELLERVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPIEMLRQAECKGDYSTRLALMEETRSLPWQAVWDYACAREGVAVGVDWLDAVKEYEVQELLTRR
>NZ_CP038513.1|WP_118881764.1|2008061_2009546_+|rhamnulokinase
MSVNIAAVDLGASSGRVIWASYDPVNENITMQEMHRFTNGMVHSNGHDCWEPERLFSNILLGLEKIDDAGIVLDAVGIDSWGVDFVLLDAAGQMLGDAVAYRDARTDGVPERVWQQLSRDEIYRRSGIQFLKFNSLYQIRALLDEKPAWLDKVTRLLLIPDYLHYRLTGQFSCEFTNASTSQLVNARSRDWDPELIALIGEGGKWLQPIAAPGTRLGHWISPSGRQVSVILPATHDTGSAIVATPLSGRGAAYISSGTWSLVGVERNAPLTDAAALAANLTNEGGVEGTWRLLKNVMGLWLVQGLQALWPQLGFAELVAQAEQAEPFAYLIHPNDERFLNPACMRSAIQHFCQETGQGTPQTPGELVRCVLDSLALCYDQVLRELENVTGESITRLHIVGGGSQNRLLNQLCADICQCTVLTGPVEASALGNIGWQLKGLGLLQDLTDVRRLIRHNTRIDTLHPHEVPQLDYYRTRFAALCAHTHSDTLIEEVV
>NZ_CP038513.1|WP_118882310.1|2006935_2007781_-|helix-turn-helix-domain-containing-protein
MKIATMFRLQQTDFFDHNKVINVLPRAPQEPFPEHCHSFHELVLIKSGCAIHITDGSAVHIRRGSVFYLREDDAHMFDQMKDLCLTNVLFRPEGFHFADGLQTLLQTSCHPTSGGLQLPPSLQPQSELLLNQIAAENSRRDACSPVMIEALFSQLAVLLWRTHQQGGEAGGKGEGDQERLLALINYLDENYQEEIDWSELSERFSIPLRTLNRKIQEHTGLTPNNYLGRVRLCHASWLLSHTNKSVTDIAFESGFNDGNYFSSKFHHAFELTPLQYRKRHK
>NZ_CP038513.1|WP_118881765.1|2005675_2006827_-|iron-containing-alcohol-dehydrogenase
MAFALCLPQLSLSGSGAIYDLVQLMCNQPARRPLIVTERALISFGLLDGLLGALRDQGFTPLVYDGVEPNPTDKVASAALASWQAGQCDALIGFGGGSAMDTAKAVRALVANPGKQIHDFEGIGKVVHTGPFMACISTTSGTAAEVTSNAVITDTRRKVKMVIIDPALIPTVAVNDPTLMVGLPPAVTAATGMDALTHAIEAYVSIGAHVLTDHSALAAIRVIAEYLPQAVANGQDLTAREMMAHGQFLAGMAFNSAGLGYVHSLAHQPGATHNLPHGVCNAILLPVVCEFNLAVREDRFADIAAAMGVDTSAMSKAGAAVAAIQAIRALSARVGIPSGLHQLGIQPGDLAGWIDAAAADPCSGCAPRVASKAELLALYQAAF
>NZ_CP038513.1|WP_050490553.1|2004632_2005460_-|rhamnulose-1-phosphate-aldolase
MQQIEFNAAVRAEIEKVVEVSAYLWQREWAERNGGNISVDLTDIFGPAPADLSQYPHCPLSMVGGEGAFPADSAGHVFFVKGTGERIRELRSPELAGCILRIDDEARGYHILWGGRGLHDYQPTSEFISHVEIVMDKQRRGAADRCVVHTHPLELIALSHHPRYARDSAAYTHACWKMLPEVRAFVPRGIGVVPYCMPGSQTMADGTTAALRQHDVAIWEKHGAVATGTDALMAFDFVDVANKGAKLHLMCLASGFEPEGVSPEAMLALQETFGL
>NZ_CP038513.1|WP_171280217.1|2003606_2004503_-|DMT-family-transporter
MSAASWWDKSTGLALLTIVLWASLAALTSRVTSVSPLVLVGLVLFFCGAGALPFWRQWRARPVNWLVTISALLLYHLLLFMSFRHAPVLEANLINYLWPLCIILFTPLLLPGHPLHGRHLLAGALGLAGSVLVMVNGELQLQQAYLPGYLLALGAAIVWGAYSVLSRRLPPAPAVMTAAACLPAGLLALLLAWLLEGPLPVARIPTGDWGLIIGLALGPMGAAFVTWYLALRDGDPRRIGALAYLTPLLSTLLLVLLNGEQLTPRHLVAGALIIGGALLGMLGKPPARQQQEAPAPLQ
>NZ_CP038513.1|WP_171280216.1|2001549_2003487_-|HAMP-domain-containing-protein
MKIAHYASLSSLALLLVAAVQVGALWHGWQQLNQAEQAQYQHERLQQRLTGTLQGTLRDYLASGDPLRLTEAEAVRKQALAQLAQQDVALTAQLRTLLEQMGARIDSDYLAAGKLSGNSQWLLQNAENELTDQARALLRYGQQGAMGSDPASAERYRQLSGDLLAALPGLAHLRQNYMEQASPKLLEGLQFELAALQKQAEQLAALPPLGLFEAPPADEFTLGEPERKELGDLPKAELLSLLKRYPQELENSRKALQQQQAGRLAVQQDIGQMLQATGHIGSELAAARQAVNQRLAAILGSLALCLVLVALLFALVQRRWLVRPLLRLRTAFLQLDETGQAETLPEGRERNELADIVASYNRLILRLQQDQQQKEGQLSAVSQSLQGMVNQVQEIHHSTRTTEQAVDESDLMMSELNQLAGEVHQVAAEIAQHAQHNEHSMSQSEQLVGGMLQATAQTGLAIDESGGALAQLKRSVEDVTAIVDVIGHISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLSADTQRSLGQITEILTRLTQAGEQLGTVLARITAEAAAQRQQAEQLRQTTQAVREMARSTAVIALQGADNAKSQEHKLASFADLIGRISQHARQGSRLSVQVSEHIHHQASQIPRILGHQA
>NZ_CP038513.1|WP_113995764.1|1999595_2001041_-|outer-membrane-porin,-OprD-family
MEKVIFKRAALSAAIVAAMLAPGMVLAADEAGPTYAAAASKFYEEGKLNGGLFYFQRDRQRIDGDPTAKNKEGKYQSNLSHATTQASLNFNSGYAWDVVGIDVGGFGAYDLAVTENHPVNQENEFSFAGNKWGENYKDGSPEGGFSLANASLKFKALDGALTAKGGLTQLYVPGVIGVNWSYQPGTYRGGQIEGNFGGLYLTYAIADEYKSPWYKETQKFSRAKAWMDPFADENVIDYIQGVAARYTFENGTAITGSYGNSENYMDSYHFKLAHKFDVLNGLSTSYQFYGSDTKTYQKGGADIETYDGLAWQQALTAAWGMGPYGFRLEGLWTKAEGNEGNYLPRLTRGYGNSQGANEIWWDSRSDWNANNEKALYFGVTRSLDDLVGAPGWSVGVSGAYGWDIQKGDGTKATNGEDTEWAANFDVMYTVQDGKLKGTLFKLHYTDYNNDISQGGGWTEYPNIFASEKDVKFHIIMPFTIL
>NZ_CP038513.1|WP_109422697.1|2017501_2017777_-|transcriptional-regulator
MARKLDDILTTEMPDVVTQAREKADLMRLEIHLTQLREMLTQAGTEPMICDQDLSIEDVTLMDLKRWVEAAGGKLQLNVEMPNGSQISFAV
>NZ_CP038513.1|WP_099368947.1|2018808_2019896_-|IS3-like-element-ISKpn10-family-transposase
MKTSRFSDTQIIAILKQAEAGAPVPELCREHGISTTTFYKWRSKFGGMDASLMARLKELEDENRRLKKMYAEERLKAEIITEAMGKKVVTPSARREMATKAVTHYAISIRLACRIFKVSESCYRYQPVLVDENQEIADWLLRITASQRNWGFGLCFLYLRNVQGFGWNHKRVYRIYRALELNLRIKPRKRLVRAKPEPLAVPDQPNQCWSMDFMHDQLSDGRSVRLFNVIDDFNREALCIEVDFSLPASRVKRALEQVITWRGKPAIIRCDNGPEYISEELKRWAKQEGITLGYIQPGNPQQNAYIERFNRTVRYDWLGHYLFESLNELQEFATNWLWVYNHERPNMALGGYTPKQRLAQAA
>NZ_CP038513.1|WP_171281212.1|2019961_2020339_+|hypothetical-protein
MTQPSRGLWQASYLGQKVTYSEARFGPMAETLAHRALLKLQAGNFDPVSDDLQFKQSWRMVDAARQLGLSLGQLRQWMLTGMLNGHVIKPPMRDVKGVDRITGCELMMAQERLAECKSGLSLCNG
>NZ_CP038513.1|WP_171280219.1|2020321_2021593_-|translesion-error-prone-DNA-polymerase-V-subunit-UmuC
MPNAIALVDVNNFYASCERLFRPDLKGRPIVVLSNNDGCVVARSAEAKALGIKMGVPYFQIRQFFEAVGGVWFSSNYALYGDMSQRVMTTLEGMVPTVEVYSVDEAFIELNESWAGDLTAYGRQIRERIQQWTGLTVGVGIGPTKTLAKLANYAAKKWPATGGVVDLRDEARRARLMAITPVGEIWGIGRKLTTRLEAHGINSVADLVAVDGKNLRHRYGVVVERTVLELRGYPCASLEQDTQAKQQIICSRSFGERITHMNSMHQALAGYMERAAEKLRAEGMCCRHVTLFIRTSPFNDKEPYYGNHVSTTLAVPTNDTRELLGVIHSLLSHIWRDGHRYQKGGVMLADFTPIGSQQGDLFDHHQHKPRSQDLMQMIDRINQGRLGKIHFGSCGRDNSDWMMKREKLSPRYTTALDELPIAK
>NZ_CP038513.1|WP_010676201.1|2021596_2022019_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MFAIPHPTPDALELPLFLSPVVCGFPSPAQDYIEQTIDLNQICIEHPAATFYVRASGHSMVEKGINDGDLLIVDRALKARHGAIVLACLDGEFTVKQLQERPFPALLPANPDFQPIHLLDGQELEIFGVVTYVLHKTKLG
>NZ_CP038513.1|WP_087756365.1|2022150_2022360_+|antitoxin
MESTVFRCGRGQGVYLPEAVALPDEVTHVEIVVVGRTRIITPVGESWDRWFDEPCMSADFMAEREQPTA
>NZ_CP038513.1|WP_001274811.1|2022905_2024447_+|IS21-like-element-ISAs29-family-transposase
MSAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELDDGRLAALFYPQADTTISARHVVPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQFCDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPTTGEVRQAQVFVAVLGASNYTFAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEHYQVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERPFKQLPGNRRDAFEQLDRPALGPLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQQLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPERHSKQQRWTPGRLKQWAADIGPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKSVLTSGRDQLPASPLSYPELPQEHENIRGPQSFH
>NZ_CP038513.1|WP_000194037.1|2024461_2025217_+|ATP-binding-protein
MTQQTLTRLRHLKLTGMADAVQQQLEQASTYEGLPFIERLSLLVEHEQLSREQRKQARLVKQARLKLQATVQEVDYQSARNLERSQVANLAQGEWLRRGQNLLITGPCGCGKTYLACALGYQACQQGHSTRYYRLPRLLLELSQAKVDGSYARLLGQLARIELLILDDWGLEAVNAEQRNALLEIMDDRYGKYSTVVVSQLPTEEWYASLGDNTLADAILDRLMHNAHRLSLKGESMRKRRSELTQSEHSS
>NZ_CP038513.1|WP_139127910.1|2027173_2027647_+|hypothetical-protein
MRKVNDDICAIDIETHNEALELLRGRFNLNKIIRPLDKHVVLKNYNHIHELHDFPAFVILNHDIAESVASALDNVSIKMYYDDIVASLGDDENDRAVTYDQVLSGWAQSNMPSYYRPGNDYQSAEEFLAEMGSENVNDSTILKNFKMAVDVLLKAKP
>NZ_CP038513.1|WP_171281213.1|2028034_2029087_-|Fic-family-protein
MDTNLGLLQGLHLSAHSTTLAHQTHALDTLLANVVASSAIENQQLNSQSLRASLACRLGILEQSPYPTSVRSEGLAAMIVDAINSDEQLTLERLLQWHRWLFPTDDRRSHQIRVGQLRGDEPMQVISGARDRLTVHFEAPPREGLEEALATFVDWFRSSLDEPCLDPFLRAAICHLWFVTLHPFDDGNGRIARALTDLALSQADNQSISLYAMSTVIFERRADYYRALEQTQRGGLDVTEWLVWFLDTLNVTLEQAQESCTHALARNRFWLLHASDQLCPEQVMILNHLLDGYTQDGLPYISASQYQKIAQVSKSTATRHLTDLLEKNCLEKGASGGGRSTRYRLKLTNH

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Crispr_ID: NZ_CP038513_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_10

2014461-2014705

Orphan

Consensus_repeat	Method
TGTTTACCAGGGGCGGAATTCCATTTCACGCTACCTGTAGCAGTTCCAGCCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP038513_10

>merge|NZ_CP038513|10|2014461-2014705|PILER-CR
TGTTTACCAGGGGCGGAATTCCATTTCACGATACCTGTAGCAGTTCGGGCCAGCGGGTACTCTGGTGCAGATCAGCCCGTTGTCAGCCGACAATCGAGTTCGCTGGGGTCAGATTTCCATTTCACGCTACCTGTAGCAGTTCCAGCCTACTGGCGCTCTGGTGCAGATCACCTCGTTGTCAGTCGACAATGGATGTTTACCAGGGGCGGAATTCCATTTCACGCTACCTGTAGCAGTTCCAGCCT

>NZ_CP038513|10|1|2014461-2014705|PILER-CR
TGTTTACCAGGGGCGGAATTCCATTTCACGATACCTGTAGCAGTTCGGGCCA	GCGGGTACTCTGGTGCAGATCAGCCCGTTGTCAGCCGACAATCGAGTTCGCTGGGGT
CAGATTTCCATTTCACGCTACCTGTAGCAGTTCCAGCCTACTGGCGCTCTGG	TGCAGATCACCTCGTTGTCAGTCGACAATGGATGTTTACCAGGGG
CGGAATTCCATTTCACGCTACCTGTAGCAGTTCCAGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_000194037.1\|2024461_2025217_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP038513.1\|WP_118881765.1\|2005675_2006827_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NZ_CP038513.1\|WP_171280216.1\|2001549_2003487_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038513.1\|WP_099368947.1\|2018808_2019896_-\|IS3-like-element-ISKpn10-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP038513.1\|WP_001274811.1\|2022905_2024447_+\|IS21-like-element-ISAs29-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP038513.1\|WP_010676201.1\|2021596_2022019_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP038513.1\|WP_171280218.1\|2010935_2011964_+\|L-rhamnose/proton-symporter-RhaT	unknown	unknown	gnl\|CDD\|237401
NZ_CP038513.1\|WP_050490553.1\|2004632_2005460_-\|rhamnulose-1-phosphate-aldolase	unknown	unknown	gnl\|CDD\|179615
NZ_CP038513.1\|WP_087756365.1\|2022150_2022360_+\|antitoxin	unknown	unknown	gnl\|CDD\|226863
NZ_CP038513.1\|WP_113995764.1\|1999595_2001041_-\|outer-membrane-porin,-OprD-family	unknown	unknown	gnl\|CDD\|335381
NZ_CP038513.1\|WP_118881764.1\|2008061_2009546_+\|rhamnulokinase	unknown	unknown	gnl\|CDD\|198349
NZ_CP038513.1\|WP_171281212.1\|2019961_2020339_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_139127910.1\|2027173_2027647_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171280217.1\|2003606_2004503_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP038513.1\|WP_118882310.1\|2006935_2007781_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|184094
NZ_CP038513.1\|WP_171281213.1\|2028034_2029087_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP038513.1\|WP_029303765.1\|2011975_2012290_+\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|131674
NZ_CP038513.1\|WP_118881763.1\|2009542_2010802_+\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
NZ_CP038513.1\|WP_171280219.1\|2020321_2021593_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
NZ_CP038513.1\|WP_109422697.1\|2017501_2017777_-\|transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_118881765.1\|2005675_2006827_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_CP038513.1\|WP_171280216.1\|2001549_2003487_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.87332e-35
NZ_CP038513.1\|WP_099368947.1\|2018808_2019896_-\|IS3-like-element-ISKpn10-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.08414e-33
NZ_CP038513.1\|WP_001274811.1\|2022905_2024447_+\|IS21-like-element-ISAs29-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42101e-37
NZ_CP038513.1\|WP_010676201.1\|2021596_2022019_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	2.12441e-59
NZ_CP038513.1\|WP_171280218.1\|2010935_2011964_+\|L-rhamnose/proton-symporter-RhaT	gnl\|CDD\|237401	PRK13499, PRK13499, L-rhamnose/proton symporter RhaT.	2.44785e-149
NZ_CP038513.1\|WP_050490553.1\|2004632_2005460_-\|rhamnulose-1-phosphate-aldolase	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	4.8759e-103
NZ_CP038513.1\|WP_087756365.1\|2022150_2022360_+\|antitoxin	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	7.57648e-20
NZ_CP038513.1\|WP_113995764.1\|1999595_2001041_-\|outer-membrane-porin,-OprD-family	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	1.66827e-17
NZ_CP038513.1\|WP_118881764.1\|2008061_2009546_+\|rhamnulokinase	gnl\|CDD\|198349	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases.	0
NZ_CP038513.1\|WP_171281213.1\|2028034_2029087_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.12654e-62
NZ_CP038513.1\|WP_171280217.1\|2003606_2004503_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	7.35452e-15
NZ_CP038513.1\|WP_118882310.1\|2006935_2007781_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|184094	PRK13503, PRK13503, HTH-type transcriptional activator RhaS.	7.70265e-77
NZ_CP038513.1\|WP_029303765.1\|2011975_2012290_+\|L-rhamnose-mutarotase	gnl\|CDD\|131674	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp. [Energy metabolism, Sugars].	1.17404e-52
NZ_CP038513.1\|WP_000194037.1\|2024461_2025217_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.96716e-68
NZ_CP038513.1\|WP_171280219.1\|2020321_2021593_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NZ_CP038513.1\|WP_118881763.1\|2009542_2010802_+\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0

>NZ_CP038513.1|WP_029303765.1|2011975_2012290_+|L-rhamnose-mutarotase
MIRKAFLMSVHPGCEVEYRRRHDELWPELAATLKAHGASNYSIFLHPESCQLFGYVEIEDEGRWCEVASTAICQQWWAYMQEIMPSHPDNSPISMELSLLFHLA
>NZ_CP038513.1|WP_171280218.1|2010935_2011964_+|L-rhamnose/proton-symporter-RhaT
MSAIVSGIGWHLVGAASAASFYAPLSKVQRWSWETTWAFAGLFSWILLPWLVTSTLIDDFGAFYSVVDSKAFWGMFLFGAMWGIGNVNYGLTMRYLGMSLGIGIAIGVTLVMGTLMPPILRGEFVQLLTTASGQITLLGVFVALIGIGIVTWAGHQKEIALGTTTQEFNLKKGLLLAVMCGIFSSGFAFGLEAAAPIRQASLALGINPLYAVLPSYGIIMGGGAIVNMGYCFIRLATRSELSLRNDLAQPARSLLLNGLLAAAGGIMWYLQFFFYAWGEASIPEHLSFVNWMLHMSGYVLCGGIVGLLMAEWKGVGTRPVRILCIGMLVIVGAANLVGMGMA
>NZ_CP038513.1|WP_118881763.1|2009542_2010802_+|L-rhamnose-isomerase
MNPNIETAFSLAKQQYAALGVDVDQALTTLATIPVSMHCWQGDDVGGFEADAGALTGGIQATGNYPGKARDAIELRRDLDLAMSLIPGAKRLNLHAIYLEAESPVARDKIEPKHFANWVRWAKERGVGLDFNPSCFSHPLSADGMTLSHPDPEIRRFWIDHCKASRRISASFGQALGTPSVMNIWIPDGMKDLPADRLGPRQRLMAALDEVLAERIDEAHHIDAVESKLFGIGAESYTVGSNEFYLGYASSRDIALCLDAGHFHPTEVISDKISAASLFVRHLLLHVSRPVRWDSDHVVLLDDETQAIANEIIRNELLERVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPIEMLRQAECKGDYSTRLALMEETRSLPWQAVWDYACAREGVAVGVDWLDAVKEYEVQELLTRR
>NZ_CP038513.1|WP_118881764.1|2008061_2009546_+|rhamnulokinase
MSVNIAAVDLGASSGRVIWASYDPVNENITMQEMHRFTNGMVHSNGHDCWEPERLFSNILLGLEKIDDAGIVLDAVGIDSWGVDFVLLDAAGQMLGDAVAYRDARTDGVPERVWQQLSRDEIYRRSGIQFLKFNSLYQIRALLDEKPAWLDKVTRLLLIPDYLHYRLTGQFSCEFTNASTSQLVNARSRDWDPELIALIGEGGKWLQPIAAPGTRLGHWISPSGRQVSVILPATHDTGSAIVATPLSGRGAAYISSGTWSLVGVERNAPLTDAAALAANLTNEGGVEGTWRLLKNVMGLWLVQGLQALWPQLGFAELVAQAEQAEPFAYLIHPNDERFLNPACMRSAIQHFCQETGQGTPQTPGELVRCVLDSLALCYDQVLRELENVTGESITRLHIVGGGSQNRLLNQLCADICQCTVLTGPVEASALGNIGWQLKGLGLLQDLTDVRRLIRHNTRIDTLHPHEVPQLDYYRTRFAALCAHTHSDTLIEEVV
>NZ_CP038513.1|WP_118882310.1|2006935_2007781_-|helix-turn-helix-domain-containing-protein
MKIATMFRLQQTDFFDHNKVINVLPRAPQEPFPEHCHSFHELVLIKSGCAIHITDGSAVHIRRGSVFYLREDDAHMFDQMKDLCLTNVLFRPEGFHFADGLQTLLQTSCHPTSGGLQLPPSLQPQSELLLNQIAAENSRRDACSPVMIEALFSQLAVLLWRTHQQGGEAGGKGEGDQERLLALINYLDENYQEEIDWSELSERFSIPLRTLNRKIQEHTGLTPNNYLGRVRLCHASWLLSHTNKSVTDIAFESGFNDGNYFSSKFHHAFELTPLQYRKRHK
>NZ_CP038513.1|WP_118881765.1|2005675_2006827_-|iron-containing-alcohol-dehydrogenase
MAFALCLPQLSLSGSGAIYDLVQLMCNQPARRPLIVTERALISFGLLDGLLGALRDQGFTPLVYDGVEPNPTDKVASAALASWQAGQCDALIGFGGGSAMDTAKAVRALVANPGKQIHDFEGIGKVVHTGPFMACISTTSGTAAEVTSNAVITDTRRKVKMVIIDPALIPTVAVNDPTLMVGLPPAVTAATGMDALTHAIEAYVSIGAHVLTDHSALAAIRVIAEYLPQAVANGQDLTAREMMAHGQFLAGMAFNSAGLGYVHSLAHQPGATHNLPHGVCNAILLPVVCEFNLAVREDRFADIAAAMGVDTSAMSKAGAAVAAIQAIRALSARVGIPSGLHQLGIQPGDLAGWIDAAAADPCSGCAPRVASKAELLALYQAAF
>NZ_CP038513.1|WP_050490553.1|2004632_2005460_-|rhamnulose-1-phosphate-aldolase
MQQIEFNAAVRAEIEKVVEVSAYLWQREWAERNGGNISVDLTDIFGPAPADLSQYPHCPLSMVGGEGAFPADSAGHVFFVKGTGERIRELRSPELAGCILRIDDEARGYHILWGGRGLHDYQPTSEFISHVEIVMDKQRRGAADRCVVHTHPLELIALSHHPRYARDSAAYTHACWKMLPEVRAFVPRGIGVVPYCMPGSQTMADGTTAALRQHDVAIWEKHGAVATGTDALMAFDFVDVANKGAKLHLMCLASGFEPEGVSPEAMLALQETFGL
>NZ_CP038513.1|WP_171280217.1|2003606_2004503_-|DMT-family-transporter
MSAASWWDKSTGLALLTIVLWASLAALTSRVTSVSPLVLVGLVLFFCGAGALPFWRQWRARPVNWLVTISALLLYHLLLFMSFRHAPVLEANLINYLWPLCIILFTPLLLPGHPLHGRHLLAGALGLAGSVLVMVNGELQLQQAYLPGYLLALGAAIVWGAYSVLSRRLPPAPAVMTAAACLPAGLLALLLAWLLEGPLPVARIPTGDWGLIIGLALGPMGAAFVTWYLALRDGDPRRIGALAYLTPLLSTLLLVLLNGEQLTPRHLVAGALIIGGALLGMLGKPPARQQQEAPAPLQ
>NZ_CP038513.1|WP_171280216.1|2001549_2003487_-|HAMP-domain-containing-protein
MKIAHYASLSSLALLLVAAVQVGALWHGWQQLNQAEQAQYQHERLQQRLTGTLQGTLRDYLASGDPLRLTEAEAVRKQALAQLAQQDVALTAQLRTLLEQMGARIDSDYLAAGKLSGNSQWLLQNAENELTDQARALLRYGQQGAMGSDPASAERYRQLSGDLLAALPGLAHLRQNYMEQASPKLLEGLQFELAALQKQAEQLAALPPLGLFEAPPADEFTLGEPERKELGDLPKAELLSLLKRYPQELENSRKALQQQQAGRLAVQQDIGQMLQATGHIGSELAAARQAVNQRLAAILGSLALCLVLVALLFALVQRRWLVRPLLRLRTAFLQLDETGQAETLPEGRERNELADIVASYNRLILRLQQDQQQKEGQLSAVSQSLQGMVNQVQEIHHSTRTTEQAVDESDLMMSELNQLAGEVHQVAAEIAQHAQHNEHSMSQSEQLVGGMLQATAQTGLAIDESGGALAQLKRSVEDVTAIVDVIGHISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLSADTQRSLGQITEILTRLTQAGEQLGTVLARITAEAAAQRQQAEQLRQTTQAVREMARSTAVIALQGADNAKSQEHKLASFADLIGRISQHARQGSRLSVQVSEHIHHQASQIPRILGHQA
>NZ_CP038513.1|WP_113995764.1|1999595_2001041_-|outer-membrane-porin,-OprD-family
MEKVIFKRAALSAAIVAAMLAPGMVLAADEAGPTYAAAASKFYEEGKLNGGLFYFQRDRQRIDGDPTAKNKEGKYQSNLSHATTQASLNFNSGYAWDVVGIDVGGFGAYDLAVTENHPVNQENEFSFAGNKWGENYKDGSPEGGFSLANASLKFKALDGALTAKGGLTQLYVPGVIGVNWSYQPGTYRGGQIEGNFGGLYLTYAIADEYKSPWYKETQKFSRAKAWMDPFADENVIDYIQGVAARYTFENGTAITGSYGNSENYMDSYHFKLAHKFDVLNGLSTSYQFYGSDTKTYQKGGADIETYDGLAWQQALTAAWGMGPYGFRLEGLWTKAEGNEGNYLPRLTRGYGNSQGANEIWWDSRSDWNANNEKALYFGVTRSLDDLVGAPGWSVGVSGAYGWDIQKGDGTKATNGEDTEWAANFDVMYTVQDGKLKGTLFKLHYTDYNNDISQGGGWTEYPNIFASEKDVKFHIIMPFTIL
>NZ_CP038513.1|WP_109422697.1|2017501_2017777_-|transcriptional-regulator
MARKLDDILTTEMPDVVTQAREKADLMRLEIHLTQLREMLTQAGTEPMICDQDLSIEDVTLMDLKRWVEAAGGKLQLNVEMPNGSQISFAV
>NZ_CP038513.1|WP_099368947.1|2018808_2019896_-|IS3-like-element-ISKpn10-family-transposase
MKTSRFSDTQIIAILKQAEAGAPVPELCREHGISTTTFYKWRSKFGGMDASLMARLKELEDENRRLKKMYAEERLKAEIITEAMGKKVVTPSARREMATKAVTHYAISIRLACRIFKVSESCYRYQPVLVDENQEIADWLLRITASQRNWGFGLCFLYLRNVQGFGWNHKRVYRIYRALELNLRIKPRKRLVRAKPEPLAVPDQPNQCWSMDFMHDQLSDGRSVRLFNVIDDFNREALCIEVDFSLPASRVKRALEQVITWRGKPAIIRCDNGPEYISEELKRWAKQEGITLGYIQPGNPQQNAYIERFNRTVRYDWLGHYLFESLNELQEFATNWLWVYNHERPNMALGGYTPKQRLAQAA
>NZ_CP038513.1|WP_171281212.1|2019961_2020339_+|hypothetical-protein
MTQPSRGLWQASYLGQKVTYSEARFGPMAETLAHRALLKLQAGNFDPVSDDLQFKQSWRMVDAARQLGLSLGQLRQWMLTGMLNGHVIKPPMRDVKGVDRITGCELMMAQERLAECKSGLSLCNG
>NZ_CP038513.1|WP_171280219.1|2020321_2021593_-|translesion-error-prone-DNA-polymerase-V-subunit-UmuC
MPNAIALVDVNNFYASCERLFRPDLKGRPIVVLSNNDGCVVARSAEAKALGIKMGVPYFQIRQFFEAVGGVWFSSNYALYGDMSQRVMTTLEGMVPTVEVYSVDEAFIELNESWAGDLTAYGRQIRERIQQWTGLTVGVGIGPTKTLAKLANYAAKKWPATGGVVDLRDEARRARLMAITPVGEIWGIGRKLTTRLEAHGINSVADLVAVDGKNLRHRYGVVVERTVLELRGYPCASLEQDTQAKQQIICSRSFGERITHMNSMHQALAGYMERAAEKLRAEGMCCRHVTLFIRTSPFNDKEPYYGNHVSTTLAVPTNDTRELLGVIHSLLSHIWRDGHRYQKGGVMLADFTPIGSQQGDLFDHHQHKPRSQDLMQMIDRINQGRLGKIHFGSCGRDNSDWMMKREKLSPRYTTALDELPIAK
>NZ_CP038513.1|WP_010676201.1|2021596_2022019_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MFAIPHPTPDALELPLFLSPVVCGFPSPAQDYIEQTIDLNQICIEHPAATFYVRASGHSMVEKGINDGDLLIVDRALKARHGAIVLACLDGEFTVKQLQERPFPALLPANPDFQPIHLLDGQELEIFGVVTYVLHKTKLG
>NZ_CP038513.1|WP_087756365.1|2022150_2022360_+|antitoxin
MESTVFRCGRGQGVYLPEAVALPDEVTHVEIVVVGRTRIITPVGESWDRWFDEPCMSADFMAEREQPTA
>NZ_CP038513.1|WP_001274811.1|2022905_2024447_+|IS21-like-element-ISAs29-family-transposase
MSAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELDDGRLAALFYPQADTTISARHVVPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQFCDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPTTGEVRQAQVFVAVLGASNYTFAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEHYQVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERPFKQLPGNRRDAFEQLDRPALGPLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQQLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPERHSKQQRWTPGRLKQWAADIGPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKSVLTSGRDQLPASPLSYPELPQEHENIRGPQSFH
>NZ_CP038513.1|WP_000194037.1|2024461_2025217_+|ATP-binding-protein
MTQQTLTRLRHLKLTGMADAVQQQLEQASTYEGLPFIERLSLLVEHEQLSREQRKQARLVKQARLKLQATVQEVDYQSARNLERSQVANLAQGEWLRRGQNLLITGPCGCGKTYLACALGYQACQQGHSTRYYRLPRLLLELSQAKVDGSYARLLGQLARIELLILDDWGLEAVNAEQRNALLEIMDDRYGKYSTVVVSQLPTEEWYASLGDNTLADAILDRLMHNAHRLSLKGESMRKRRSELTQSEHSS
>NZ_CP038513.1|WP_139127910.1|2027173_2027647_+|hypothetical-protein
MRKVNDDICAIDIETHNEALELLRGRFNLNKIIRPLDKHVVLKNYNHIHELHDFPAFVILNHDIAESVASALDNVSIKMYYDDIVASLGDDENDRAVTYDQVLSGWAQSNMPSYYRPGNDYQSAEEFLAEMGSENVNDSTILKNFKMAVDVLLKAKP
>NZ_CP038513.1|WP_171281213.1|2028034_2029087_-|Fic-family-protein
MDTNLGLLQGLHLSAHSTTLAHQTHALDTLLANVVASSAIENQQLNSQSLRASLACRLGILEQSPYPTSVRSEGLAAMIVDAINSDEQLTLERLLQWHRWLFPTDDRRSHQIRVGQLRGDEPMQVISGARDRLTVHFEAPPREGLEEALATFVDWFRSSLDEPCLDPFLRAAICHLWFVTLHPFDDGNGRIARALTDLALSQADNQSISLYAMSTVIFERRADYYRALEQTQRGGLDVTEWLVWFLDTLNVTLEQAQESCTHALARNRFWLLHASDQLCPEQVMILNHLLDGYTQDGLPYISASQYQKIAQVSKSTATRHLTDLLEKNCLEKGASGGGRSTRYRLKLTNH

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Crispr_ID: NZ_CP038513_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_13

4108584-4108675

Orphan

Consensus_repeat	Method
AGCCAAAGCGCAGGATTACACCAAGC	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP038513_13

>merge|NZ_CP038513|13|4108584-4108675|CRISPRCasFinder
AGCCAAAGCGCAGGATTACACCAAGCGGTGCCCATCACCAAGGCGGGAAATGACGGTCGTTATCCCAGCCAAAGCGCAGGATTACACCAAGC

>NZ_CP038513|13|10|4108584-4108675|CRISPRCasFinder
AGCCAAAGCGCAGGATTACACCAAGC	GGTGCCCATCACCAAGGCGGGAAATGACGGTCGTTATCCC
AGCCAAAGCGCAGGATTACACCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_011706585.1\|4110974_4111493_+\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP038513.1\|WP_011706583.1\|4106777_4108547_-\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	unknown	unknown	gnl\|CDD\|183016
NZ_CP038513.1\|WP_039213717.1\|4104708_4105470_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP038513.1\|WP_065478240.1\|4119904_4120564_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP038513.1\|WP_171280798.1\|4115049_4115991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171280799.1\|4117658_4119731_+\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236966
NZ_CP038513.1\|WP_171280795.1\|4108745_4111037_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|236924
NZ_CP038513.1\|WP_171280790.1\|4096900_4098190_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP038513.1\|WP_171280800.1\|4120648_4121545_+\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212519
NZ_CP038513.1\|WP_099368947.1\|4098961_4100049_+\|IS3-like-element-ISKpn10-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP038513.1\|WP_171280796.1\|4111486_4111981_+\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP038513.1\|WP_171280797.1\|4112097_4113606_+\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP038513.1\|WP_106552881.1\|4113683_4114874_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP038513.1\|WP_171280794.1\|4105776_4106778_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP038513.1\|WP_039215927.1\|4116221_4117277_-\|porin	unknown	unknown	gnl\|CDD\|225744
NZ_CP038513.1\|WP_011706579.1\|4103851_4104496_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP038513.1\|WP_011706577.1\|4100954_4101509_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP038513.1\|WP_171280793.1\|4105466_4105655_-\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|183328
NZ_CP038513.1\|WP_171280792.1\|4100012_4100372_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171280791.1\|4098311_4098680_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_011706583.1\|4106777_4108547_-\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NZ_CP038513.1\|WP_039213717.1\|4104708_4105470_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	1.40777e-155
NZ_CP038513.1\|WP_065478240.1\|4119904_4120564_+\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	1.12675e-49
NZ_CP038513.1\|WP_171280799.1\|4117658_4119731_+\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|236966	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.	0
NZ_CP038513.1\|WP_011706579.1\|4103851_4104496_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	3.35889e-165
NZ_CP038513.1\|WP_171280795.1\|4108745_4111037_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|236924	PRK11539, PRK11539, ComEC family competence protein; Provisional.	3.67638e-114
NZ_CP038513.1\|WP_171280790.1\|4096900_4098190_+\|PAS-domain-S-box-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	3.63358e-46
NZ_CP038513.1\|WP_171280800.1\|4120648_4121545_+\|histone-deacetylase	gnl\|CDD\|212519	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11. Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients.	1.06164e-130
NZ_CP038513.1\|WP_099368947.1\|4098961_4100049_+\|IS3-like-element-ISKpn10-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.08414e-33
NZ_CP038513.1\|WP_171280796.1\|4111486_4111981_+\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	1.50495e-29
NZ_CP038513.1\|WP_171280797.1\|4112097_4113606_+\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP038513.1\|WP_106552881.1\|4113683_4114874_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP038513.1\|WP_011706585.1\|4110974_4111493_+\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	3.616e-46
NZ_CP038513.1\|WP_171280793.1\|4105466_4105655_-\|Trm112-family-protein	gnl\|CDD\|183328	PRK11827, PRK11827, protein YcaR.	2.5241e-21
NZ_CP038513.1\|WP_011706577.1\|4100954_4101509_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	2.33554e-83
NZ_CP038513.1\|WP_171280794.1\|4105776_4106778_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	4.57896e-172
NZ_CP038513.1\|WP_039215927.1\|4116221_4117277_-\|porin	gnl\|CDD\|225744	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane].	3.7867e-30

>NZ_CP038513.1|WP_011706583.1|4106777_4108547_-|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA
MQQETSQDSWPVFKRLLGYVRDRKLGLIGGIIGMLGYAAVDTTFVYSIKPLIDQGINGNDPTVLKWMPFFVLGIVALRGVANFLSNYCMAWVGNHVVMRLQQQVFNHMVAMPMSFFDRQNTGHLLSKVTYDASQVSSAASTTLVTLVREGATVIGLLGLMFWHSWQLSVIFLVVGPVVGIIIGLISRRFRQISRHIQQAVGDITTSTEQMLKGHKEVLMFGGQKVEEKRFFKVSNNMRQQTMKMVAADAIGSPVVQMVASIALAAFLYVATIDSVRSELTAGTFTVMITSMMMLLKPLKSLTDVNNQFQRAITACHSLFGLLDTEPEQDTGTRTLERARGEIEFRNVTFTYPTKDTPALHNVSFKVEAGKSVALVGRSGSGKSTIASLLTRFYDIEQGEILLDGVNIRDYRLSELRKQYALVSQHVHLFNDTVASNIAYAAEEKYSLDEIKQAARIAHADEFVSKMSNGYDTVVGENGASLSGGQRQRIAIARALLRDAPVLLLDEATSALDTESERHIQAAIDELCKARTSLVIAHRLSTIEKADEILVIDEGHIVERGNHAALMAQQGTYAQLRAIQFGHATAGGNA
>NZ_CP038513.1|WP_171280794.1|4105776_4106778_-|tetraacyldisaccharide-4'-kinase
MLERLWYAKSGWRWLLAPFALLFAIISGTRRYAYRHGWRKGYRASLPVIVVGNISVGGNGKTPVVVWLVEQLQARGYRPGVVSRGYGGKAPHYPYRLDAASTTAQAGDEPVLIARRCGCPVVVAPRRADAVRLLEQSGEVDIIITDDGLQHYALARDIELVVVDGARRFGNACLLPMGPLREPVTRLKRVDAIICNGGEPGRGEYPMRLVADVPRRVRDEAPLATPLAGPVDALAGIGHPPRFFATLEGLGYQLDQRVAYGDHHPFDRDELVGRFAGKPLLMTEKDAVKCRSFALDNWWYLPVSAELPASLLDTLLHKLGANGKGQGATKAQG
>NZ_CP038513.1|WP_171280793.1|4105466_4105655_-|Trm112-family-protein
MALDIKLLDIIACPVCKGKLHYSKAVHELVCRFDKLAYPLEEGIPVLLENRARPLSSDELSS
>NZ_CP038513.1|WP_039213717.1|4104708_4105470_-|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALQSGADRVIVATDDERVQQALAACAGQAGFEVCMTSKDHQSGTERLAEVCRHYGFAADTIVVNVQGDEPLIPPVIIRQVADNLAAATAPMATLSVPIQDAEEVFNPNAVKVVTDQEGYALYFSRASIPWDRDRFAANREQIGDHYQRHIGIYAYRAGFIQRYVDWAPSALEQIEALEQLRVLWYGEKIHVAQALEAPPVGVDTQADLDKVRALLAN
>NZ_CP038513.1|WP_011706579.1|4103851_4104496_-|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVFLVDDHELVRTGIRRILEDVRGIKVVGEAQSGETAVTFCRQHHPDVILMDMNMPGIGGLEATRKILRIRPDVRIIVLTIHSENPFPTKVMQAGAAGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADENPFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLNINGDVELTHLAIRYGMLDADTL
>NZ_CP038513.1|WP_011706577.1|4100954_4101509_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTNIPNLLTFFRILLIPVFVILFYLPYQWSYLAAAIVFILAAATDWFDGYLARKLNQSTAFGAFLDPVADKIMVAAALVVIVEHYNTIWVTIPAMTMIGREIIISALREWMAELGKRSSVAVSWIGKWKTMIQMVSLTGLIWQYDIWMVWLAYVLLYVATVLTFWSMFQYMKAAWGDLTYHSRF
>NZ_CP038513.1|WP_171280792.1|4100012_4100372_-|hypothetical-protein
MAKVQERQGAKGKTYRVEFMREGSRVSKTFRLKKEAEKFAALITLNADLAGTLANVTLNTLSLQSAIAEYLDQHTGKDPNVKGRLNWWACALGAEVIPPFLGAFKSRGHAACARRCFGV
>NZ_CP038513.1|WP_099368947.1|4098961_4100049_+|IS3-like-element-ISKpn10-family-transposase
MKTSRFSDTQIIAILKQAEAGAPVPELCREHGISTTTFYKWRSKFGGMDASLMARLKELEDENRRLKKMYAEERLKAEIITEAMGKKVVTPSARREMATKAVTHYAISIRLACRIFKVSESCYRYQPVLVDENQEIADWLLRITASQRNWGFGLCFLYLRNVQGFGWNHKRVYRIYRALELNLRIKPRKRLVRAKPEPLAVPDQPNQCWSMDFMHDQLSDGRSVRLFNVIDDFNREALCIEVDFSLPASRVKRALEQVITWRGKPAIIRCDNGPEYISEELKRWAKQEGITLGYIQPGNPQQNAYIERFNRTVRYDWLGHYLFESLNELQEFATNWLWVYNHERPNMALGGYTPKQRLAQAA
>NZ_CP038513.1|WP_171280791.1|4098311_4098680_-|hypothetical-protein
MAQPLSDIDLCEALSDLFVDNEVDFELIAQVAQGFPVAHVEMVLFEWVAPVCYTNTLAPVPPIWTGFERDSLWVEVQRLRAREAKAGFAKKLSIMLRQFYLRLRFAEEWHRLSVLLAEKGCK
>NZ_CP038513.1|WP_171280790.1|4096900_4098190_+|PAS-domain-S-box-protein
MFNTKLKQELVAERARALQSEALNHAMHAHLPMIEFTPEGHILDASPLFLSTVGYSLKEIVGQHHAIFCRKEDSDSPSYREFWRKLANGHNQHGTFQRVGKHGQEIWLEATYFPVSQDGKVSKVVKIASDVTLQHDQLMTQKAIFEALDRSLAVIEFEPSGVIINANRNFLDTMGYRLDEIKGRQHRMFCDELFYREHPDFWQELAQGTFKSGRFQRFDKQGHEIWLEATYNAVRGSHGKVIKVIKFASNITSQIKKDQAVQNVAKVANETSVTTKASAIKGEDMLTTVVSTSDNIVTQMENASTLMNKLHAQSQNITAIVSTISSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSQSTNEIASVVSQNQQLTHQVSEQIQSAANGAIHGQRQIDDVAKVMQEIRNGAEEVSTIISEL
>NZ_CP038513.1|WP_171280795.1|4108745_4111037_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLVFLECRRIRQPALYESFGHIETLLNTCTMDLRLLSFALGASSSLLWPWLPSWEWGGLMLLLAFPLAGYRCWRLLFLLCGILWMQGSLHYRLAWLDQLGKKTSHIITAQLQSAEPEGDKFIRLVLRVNRLDEQTLTPAPLVRINAYQALPAMTAGSRLTLVVSLKPAHGLANEAGMDGRRLLLGKGITATGNLRRVIQIEPAQTGLRERWLARAAASWQDLSQGPLLAALTFGEQGGITDEQWSLFRGSGLTHIIAISGQHIALVAVLGWWLGRLFGLRGAILVALLFAALYSWLAGFAVATERALIMVLVWSLLRWRRREWPAHRIWLWAFVVLTLWDPFALYSAGFWLSFLAVALLLVASLLEAKPGLIRLQGLLLLGLLPLQLALFEGIAPLSLLLNLLALPLFCIGIIPLALIGVLLAPLSAELAHLLFWLADVGLQWVLWALASLASQWQLWWPVPGWVLPFTALLTLLWCAWHVPGGRPLLLPGGVALLLAAWPAPTHWQLRVLDVGQGLAVLITRGERGILFDTGDRYPGGYNMADAVILPLLNRLDVRVLDYLIISHKDRDHAGNRRAILQALPVRHELSSFDFGRFTALCRRGQQWRWQGLEMAVLWPQQPGPGHNNDGCVLQIRDGERRILLSADIERQAEQRLLALEGEGLASTLLVSPHHGSRTSSTAPFVAAVAPRYVVHSAGFMNQWGFPRPEVVARYQEAQQWVTGLDGEILVEPAPGGLRIRAEREQGPWFRRKGDWWRPAFWPDR
>NZ_CP038513.1|WP_011706585.1|4110974_4111493_+|DUF2062-domain-containing-protein
MPKRLIQRWLPDPATLKEHKHLRLFGKLLLDANLWHLNRRSAAGAFAVGLFMAWVPLPCQMLLAAGGAIACRVNLPLSVALVWLSNPFTMPPLFYGAYLTGCQLLGQSSQHIEIEFTWAWLVSVFETVAPPLLLGSLVLALLSSLIGYALIRTCWRISTVRQWQKRKVARAC
>NZ_CP038513.1|WP_171280796.1|4111486_4111981_+|DUF2062-domain-containing-protein
MLNRWFARFKIDPDTLRQQKWFSLFGERLLAPALWQGGPRALSGAVAAGIFACWFPIPMHSLIAVGLALAFSLNLPLALLAVWFNNPLTLPFMYLYAYRTGCLVLHETPEPFHLTWSLHWLEHEAATLVPPFLLGSLLLAILTATTGALLTLLTLQLGRRIRAS
>NZ_CP038513.1|WP_171280797.1|4112097_4113606_+|DUF853-family-protein
MAEPLTLAHANGHPLSLLPAMANRHGLITGATGTGKTVTLQVLAEGFSRLGVPVFLADVKGDLSGLGAAGMPSPKLDARLTQLGIPAPAFAASPTLFWDLFALQGHPVRATVSDMGPLLLARLLGLNDTQSGVLELVFKVADDEGLLLLDLKDLRAMVQFAGDNAKTLTTRYGNVSTASIGAILRNLLTLESAGGDHFFGEPMLDIQDLLQTDEAGHGHINVLAASKLTQSSRLYACFLLWLLSELFEQLPEVGDPEKPVLVFFFDEAHLLFNDAPKALLEKIELVVRLIRSKGVGVYFVTQSPADIPDSVLGQLGNRIQHALRAFTPSDQKAVRIAANTLRTNPAFDAAGVITELGVGEALVSLLDEKGRPGVVERAFIAPPASRIGPLSDPERQALIQGSLLYGRYETPEDRESAFERLNGGRVTPTSEQGSEQPSNGEGGLLDALNGILFGRTGPRGGQHDGVVQTAAKSVARTLGNEVGRQLVRGVLGSLLGDGKRRR
>NZ_CP038513.1|WP_106552881.1|4113683_4114874_-|aspartate/tyrosine/aromatic-aminotransferase
MFEKVVAAPADPILGLTEAFRADSRSHKINLGVGIYKDETGATPILHCVKKAEQKLLTDEKTKNYLGIEGNIEYGRIVQQLLFGQDSALVASGRAKTAQAPGGTGALRIAAEFVVRNGLAKTIWISDPTWANHVSVFQAAGLSVKWYKYYDAASKGLDFAAMQASLAEVQAGDLVLLHGCCHNPTGIDPTADQWRALAKQSAAAGWLPLFDFAYQGFARGIEEDAEGLRIFAECHDELLVASSFSKNFGLYNERVGAFTLVSATKEIADVAFTQVKTVIRANYSNPPSHGAAVVTAVVSDPALYAEWVEEVAAMRVRIREMRELLVEKLAARGVNQDFSFIREQNGMFSFSGLSKDQVERLKSEFAIYIVGSGRISVAGITRANIDPLCDAIAKVL
>NZ_CP038513.1|WP_171280798.1|4115049_4115991_-|hypothetical-protein
MIDFSHPQWRELARQLLDNPTSVVRARQWQPLLGLLKDNQLLLALGNHHYELTPAGRRYLTRELTLAEIATAPPTPEEWLHGQGWQLAEQVNERVLAALYRKSEVSFSPNEQIDFEDKGIRLCADQLLRLRAPQPFSLFFSGGTLLDAAPWLQALGEVALPERNLAGLGKILWGEGELLRVITTDSVGAFAELVLPAGTLLVWAPAPAQQALQQVIAALPPQVQWSHLTSLDPSGVDRVLTLAQRLGRPASWWLPTALAPIMAAYALPLTDSRPWEPSRIPKSLLAVCSGLVESNGGLSAEVCALAPQWHAIG
>NZ_CP038513.1|WP_039215927.1|4116221_4117277_-|porin
MKKTILAIAIPALFASAANAAVVYDKDGTTFDVYGRVQANYYGDTNEADSTAASGYKDVDGELKGSSRLGWSGKIALNNTWSGIAKTEWQVSAENSANKFDSRHIYVGFDGTQYGKIIFGQTDTAFYDVLEPTDIFNEWGSEGNFYDGRQEGQVIYSNAIGGFKGKVSYQTNDDQAVKVADVAGGIKTTVFPDVKRKYAYAAAVGYDFDFGLGFNGGYAYSDLEGKTTDATGKKSEWALGAHYAINGFNFAGVYTQADVKNDTTGYKDEGRGYELAATYNVDAWTFLAGYNFKEGKENANLSGSSYKDLMDATLLGVQYSFTSKLKAYTEYKINGVSGKDDDFTVALQYNF
>NZ_CP038513.1|WP_171280799.1|4117658_4119731_+|ATP-dependent-DNA-helicase-DinG
MLSTRLKTTIRNTYRQIADGLPGFVPRKEQNFLVAEIAKTLTGEYDKQRRILVAEAGTGIGKSLSYAQGAIPVARLTQKKLVISTATVALQEQLIHKDLPFYHRHSELPFRFMLVKGRQRYCCEHLLEQAASGSEMANFEFDFGSLSKHKPSDADKSCYQALWQAYTDGKWDGDRDNWPKPITDLCWDRIAADRHTCNKALSHHQHCPFHRARNDMDAADVLVVNHALLLSDLTMGGGIILPPPDECIYVLDEAHHLPTIARDHGAASASVKGSRRWLEKLAQGAGKLARTLNKESLLDPQLKLQDALASLQPDLKALEQWLAANDRLFNEEKHYRFADGVLPAPLPMLAENLKEASKKALRALDRMQGAIGEALKDGEIRRKEAEPLLAESGFYLQRLEGFCALWEMLGRHVAQGKTPLARWMVKSDDGDIWLHASPIEVGYLLEEWLWSRCLGAVLVSATLTALSSFSYFRHQVGLKEHDGTRYLRLRSPFDYQKAELYLPKMEHEPSAPAFTQELISTLPRLLAGKEASLVLFSSYRQMNEVAVGLRAKGLSLLVQGEASRNALLTLHKQKCDGGQASILFGTGSFSEGLDLPGHYLTNLVITKLPFAVPNSPVEEATAEWVEKRGGNPFLQLTVPEASRKLIQACGRLIRKEADRGRVTILDRRLLTKRYGKGLLDALPPFSRRIE
>NZ_CP038513.1|WP_065478240.1|4119904_4120564_+|DUF2057-domain-containing-protein
MKLTVLVPALAGLLWAGSALADAQLEVTNPYVVQLIDGQSINPKLLDKTNTFPLKAGKHQLVVAFEGNFSSRSDIKLVTAEPLVINFTAADNQKLVLDYKKPRNEAEAKLFVKEQKVALKDKSSNQVVASEQFVLPKVEGFQLTRDYQQELLNMGKAFNQPATVAVSTAAVMAANSAPVQVAPSKAQSNPEALTQLQNWYNKADAETRKAFQIWVIQQQ
>NZ_CP038513.1|WP_171280800.1|4120648_4121545_+|histone-deacetylase
MSLRIFYHPLYSALALPARHRFPLAKYQALFERLGSLGYPLAEAAPATPEQIKRVHDAAYVEAALAGTLDAGAIRQLGFPWSPLLMERTLRSVGATLAASRHALEQGCGLQISGGYHHAHRDVGSGFCLFNDLVIAAQMCLDEGRCEQVLIIDLDVHQGDGSAALCEGRRDIITLSLHGEHNFPRHKPASHMDFPLPSGMADDAYLTTLAEALNLALRLYTPDLILYQAGVDVHRDDELGYLALSDEGVRQRDAMVFDCALRHGLPIAAVPGGGYRRDWQQLLPLHMSLFEEAKKRYG

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Crispr_ID: NZ_CP038513_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_14

4393949-4394047

Orphan

Consensus_repeat	Method
TAAACCGGTCAGATCCCACCCAGCGCCCGTGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_14

>merge|NZ_CP038513|14|4393949-4394047|CRISPRCasFinder
TAAACCGGTCAGATCCCACCCAGCGCCCGTGCTGATCTTCGACGTGGAACTGCTGGGTATTCAATAAACCGGTCAGATCCCACCCAGCACCCGTGCTGA

>NZ_CP038513|14|11|4393949-4394047|CRISPRCasFinder
TAAACCGGTCAGATCCCACCCAGCGCCCGTGCTGA	TCTTCGACGTGGAACTGCTGGGTATTCAA
TAAACCGGTCAGATCCCACCCAGCACCCGTGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_005303072.1\|4400700_4401402_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|237368
NZ_CP038513.1\|WP_171280934.1\|4392168_4393323_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|162157
NZ_CP038513.1\|WP_135319287.1\|4382735_4384013_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP038513.1\|WP_044800444.1\|4390097_4391441_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP038513.1\|WP_124243595.1\|4399483_4400647_-\|MFS-transporter-TsgA	unknown	unknown	gnl\|CDD\|235151
NZ_CP038513.1\|WP_171280938.1\|4405688_4407260_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP038513.1\|WP_171280936.1\|4398727_4399405_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP038513.1\|WP_171280932.1\|4388246_4389590_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP038513.1\|WP_162837661.1\|4389948_4390098_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_011706806.1\|4394336_4395104_+\|dioxygenase	unknown	unknown	gnl\|CDD\|153375
NZ_CP038513.1\|WP_171280940.1\|4408158_4409433_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP038513.1\|WP_171280930.1\|4384064_4384676_-\|HTH-type-transcriptional-regulator-PuuR	unknown	unknown	gnl\|CDD\|182158
NZ_CP038513.1\|WP_080688898.1\|4402611_4403541_+\|DUF1837-domain-containing-protein	unknown	unknown	gnl\|CDD\|378078
NZ_CP038513.1\|WP_171280933.1\|4391539_4391920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171280931.1\|4386599_4387889_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032
NZ_CP038513.1\|WP_171280935.1\|4395267_4398537_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182169
NZ_CP038513.1\|WP_017410731.1\|4384986_4386450_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP038513.1\|WP_171280939.1\|4407640_4408066_-\|SgcJ/EcaC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226769
NZ_CP038513.1\|WP_171280929.1\|4382160_4382640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038513.1\|WP_171280937.1\|4401687_4402068_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_005303072.1\|4400700_4401402_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|237368	PRK13374, PRK13374, DeoD-type purine-nucleoside phosphorylase.	9.19781e-163
NZ_CP038513.1\|WP_171280934.1\|4392168_4393323_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|162157	TIGR01013, Sodium-dependent_phosphate_transport_protein, Phosphate:Na+ Symporter (PNaS) Family. [Transport and binding proteins, Cations and iron carrying compounds].	5.41375e-40
NZ_CP038513.1\|WP_135319287.1\|4382735_4384013_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	2.02982e-76
NZ_CP038513.1\|WP_171280936.1\|4398727_4399405_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.90545e-17
NZ_CP038513.1\|WP_171280938.1\|4405688_4407260_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	4.03415e-84
NZ_CP038513.1\|WP_171280939.1\|4407640_4408066_-\|SgcJ/EcaC-family-oxidoreductase	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	6.28519e-33
NZ_CP038513.1\|WP_171280930.1\|4384064_4384676_-\|HTH-type-transcriptional-regulator-PuuR	gnl\|CDD\|182158	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR.	2.98619e-116
NZ_CP038513.1\|WP_011706806.1\|4394336_4395104_+\|dioxygenase	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	1.08659e-99
NZ_CP038513.1\|WP_124243595.1\|4399483_4400647_-\|MFS-transporter-TsgA	gnl\|CDD\|235151	PRK03699, PRK03699, putative transporter; Provisional.	4.15918e-162
NZ_CP038513.1\|WP_080688898.1\|4402611_4403541_+\|DUF1837-domain-containing-protein	gnl\|CDD\|378078	pfam08878, DUF1837, Domain of unknown function (DUF1837). This family of proteins are functionally uncharacterized.	8.19007e-50
NZ_CP038513.1\|WP_171280940.1\|4408158_4409433_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP038513.1\|WP_171280931.1\|4386599_4387889_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP038513.1\|WP_171280935.1\|4395267_4398537_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|182169	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS.	1.85742e-94
NZ_CP038513.1\|WP_044800444.1\|4390097_4391441_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.17173e-40
NZ_CP038513.1\|WP_171280932.1\|4388246_4389590_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.16943e-44
NZ_CP038513.1\|WP_017410731.1\|4384986_4386450_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0

>NZ_CP038513.1|WP_171280934.1|4392168_4393323_+|Na/Pi-cotransporter-family-protein
MHSTPSFAQQQTRRTGPLFNWLAVITLIYLILVAVGAVSHGFKGFSGGADGAAQIFAFANNPFVALLLGILATALVQSSSTVTSVIVGLVAGGLPIGMAIPMVMGANLGTTITNTIVSLGHIRDRGEFRRAFAAATVHDFFNLLAVFIFLPLELMFGLLQKSAEALADLLAGSADMSMQGMDFMKPLLSPALTFIDGLVAFLPGKGPAIATICIGILLILGCVTWLGKVLQRVLVGRARDLLHRALGRGPLTGIASGTLVTVMVQSSSTTTSLMIPLAGGGVFSTRQLYPFTLGANIGTTITALLAATAISGAGAKLALTIALVHVLFNLFAVVLIYGVPFLRELPVKAAEGLARVGSENKLLALGYVAGLFFALPALMMVAAK
>NZ_CP038513.1|WP_171280933.1|4391539_4391920_-|hypothetical-protein
MRAWVLCLSLGLLSAGAQASVFKSECNLDKAVKNEALNATLGVKGNCDTDKLVRQQKEKAKAEVKKNTTDVLDQKTAGLKEGKSQLQGTQQKVNQAGQQLKRTQQDVKAVAKDPLKAAATAVINQG
>NZ_CP038513.1|WP_044800444.1|4390097_4391441_+|APC-family-permease
MAGAKLLKTLTLFQVVVMGLAYLTPMAVFDTFAIVGDITEGRVATAYLLALGGILLTAFSYGHLVRRFPSAGSAYTYAQKVFNPYIGFMVGWSSLLDYMFMPMINILLAKIYLTAMFPGVEPWIFIFGLVTVMTLLNLRGINLVANFNGVIVFIQLAIITVFLGLMGWGIYHGEGAATLLSSRPFHFESAGMVPLFTGATILCFSFLGFDGLSSLSEETPNAGKVIPRAIVLTALIGGIIFVAVSYFLQLYFPDLARFKEPDAVLPEIALYVGGTLFQSVVLVCTTVAVLASGMAAHAGVSRILYVMGRDRMIPERVFGYIHPKFRTPAINVLMVGALALSAVSFDLDMALALVNFGALVAFTFVNLSVIGQFWVREKRNKSLKEHLLFLVLPLLGAATIGALWINLEQSSLELGLIWAGLGVTYLFLRLAVFRIPFRQYEEAADTQ
>NZ_CP038513.1|WP_162837661.1|4389948_4390098_+|hypothetical-protein
MGHFTAFLPVPAGVRHPSVPQTGVPCVQRRAASLIPSPFADLAIAEEKA
>NZ_CP038513.1|WP_171280932.1|4388246_4389590_+|APC-family-permease
MNAQPVGLKKSLKLWHVVIMGLAYLTPMAVFDTFGIVTEITEGHVPTAYLFALIGMLFTAMSYGHLVRKFPSAGSAYTYAQKVFHPYVGFMVGWVSLLDYMFMPMINMLLAKIYMEALFPSVEPWTYILGLATVMTLLNLRGIKLVANFNSLIVIMQFSIIAVFIGLIAWGVYHGEGLGTVASSRPFFSEHMNVAPLLTGASILCLSFLGFDAITTLSEETPDASRVIPRAIVLTALIGGVLFISVSYFLQLFFPDISRFQQPDAVLPEIALYVGGKLFQAVVLVCTTVAVLASGLASHAGVSRLLYVMGRDRALPSRFFAYVHPTWQTPALNVLLVGVLALSAVSFDLEMALALINFGALVAFTFVNLAVIAHFYLKLGHNKTLRDHLVFLLLPLCGAACIGVLWLNLEPASFELGLIWAALGALYLLLRLTVFRVQLRRPETDAS
>NZ_CP038513.1|WP_171280931.1|4386599_4387889_+|4-aminobutyrate--2-oxoglutarate-transaminase
MSQSASNKAWQARREAAVVNGVGTLLPVFIERAQNAELWDVEGNRYIDFASGIAVLNTGHNHPKVVAAVRAQLEKFSHTCFQVTPYPGYIELAEKLNALVPGPTPKRTLFLSTGAEAVENAIKIARAHTGRSGTIAFKGGFHGRTMMGMALTGKVVPYKTGFGPFPGEVYHLPFPSDYLGVSEADALAALDLCFSSDIEPTRVAAIIIEPVQGEGGFYPASASFMQRLRSICDQHGILLICDEIQSGFCRTGKTFATEYAGIEPDIMTLAKSLAGGFPLSAVVGKAEVMNAAKPGGLGGTYAGSPIACAAALAVLEVIEEEQLNQRAQAQGEQIKARLQQLAERFDCIGDIRGPGAMVAMELVKQRDAARPDADLTKRLVAEAGKRGLVLLACGVRANVIRFLAPLTASPALIDEGLDLLEQALLAAQG
>NZ_CP038513.1|WP_017410731.1|4384986_4386450_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSASQPALSLIKSLAYIDGRWCEAGGGRRFEVHNPATGQVITQVPDMDEGDTRRAIAAAHAAQPGWAALTAKERSNRLYAWFELIMANQEELARIMTCEQGKPLAEAKGEVAYGASFIQWFAEEGKRAYGRTIPGFSSDRRLATIKQPVGVVAAITPWNFPIAMITRKAGPALAAGCTIVIKPAAETPLCALALAALAEQAGIPAGVINIVTSHQAAAVGNELCNNKTVRKLSFTGSTRIGKLLMRQCADTMKKLSLELGGNAPFIVFDDADLDAAIAGALASKYRNAGQTCVCANRILVQAGIYDAFAEKLTAAVKAFKVGDGMSEGTQIGPLINPAAASKVAELVKQATAAGAELLLGGEAHPAGPLFYQPTILGKVDKANPILQEEIFGPVAPLVRFETEAEAIALANDTPYGLAAYFYGRDIARVWRVAEQLEYGMVGINEGIISTELAPFGGIKESGLGREGAAEGLEEYLETKYLCFGGIR
>NZ_CP038513.1|WP_171280930.1|4384064_4384676_-|HTH-type-transcriptional-regulator-PuuR
MQQPQGETRWQSMTDNPMTDKGGAQSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQKLLSVYELPLSRFFAEEEGGTPSVVIKAEQLIELGSQGVSMKLVHNGNNRRQLGFMLETYAPGTDTGGQVTHLGEEVGTVLEGSVVLTVAGQAYPLSAGDSYVIDTGEPHSFSNPSGQVCRIVSAHTPANF
>NZ_CP038513.1|WP_135319287.1|4382735_4384013_-|FAD-binding-oxidoreductase
MTEHVNSYYAASANKHAPYPTLTEQLECDVCVIGAGYTGLSSALHLVEKGYSVVVLEAARVGFGASGRNGGQIVNSYSRDIDTIEANCPPDQARLLGSMLFEGGQIIRERIKRYNIQCDLQEGGVFAAETEKQLHELKAQQARWEKWGNDKLELLDADGVREVVASDRYVGALLDKSGGHIHPLNLALGEAEAIRLQGGKIFEQSAVISITPGTPALVKTAKGAVKARFVVVAGNAYLGNLVPELAGKSMPCGTQVIATEVLGEERARSLLPQNYCLEDCNYLLDYYRTSGDHRLIYGGGVVYGARDPADIERLIIPKMLKTFPQLADVKVEYTWTGNFLLTLSRLPQFGRIGPNIYYMQGYSGHGVTCTHLAGKLLSEVLSGQAERFDAFAKLPHYPFPGGRLFRIPFTAAGAAWYTLRDRLGV
>NZ_CP038513.1|WP_171280929.1|4382160_4382640_+|hypothetical-protein
MRRAALIRLLFGLSATGMVLVGLVLINSLGCNYEMHLSSKEADYYAVCRAGKFTVIERDRYTKAKWMVSAYQAVLGNQLIFLVTDRTLIERPDKQSALSDINQVEGTFSMPLNYGWQMITPEQIAIFQHSPHPELLQGHFEGWLDFYHKFWPATPLRAQ
>NZ_CP038513.1|WP_011706806.1|4394336_4395104_+|dioxygenase
MSIAPVWFISHGAPDLVLRDQPATHFLKNLRLGDLKGLVVISAHWFTRSELQINVEPNPALMYDFYGFPEPLYHIRWPASSPLWLQEAVSDQLLLAGLPAEPVRRELDHGVWSPLSLMDPASSVPLVQLSIPASFTPRQLWQLGEALQQLRAQGIGILASGAITHNLRALGPENSPVPGWARSFVNWLELTMSEGDRTALEDYRARAPGAVESHPHDDHLRPLFVALGAAGQDKPVKLHDSWDGGSLYMGSYRFG
>NZ_CP038513.1|WP_171280935.1|4395267_4398537_+|transporter-substrate-binding-domain-containing-protein
MNLIRPLLLLCLLFPLCAQALTLHSRHYLQSSPAPTQAAEQQWLARHQLLRVGVLRHDYRPFAMIGPDEHFEGISADYLDIVAKTLQKPVELRVFDDKRSALAALRAGELDLVNLGNLSLSGPDQAGIALSQRYFSSAPVFSALAAEQGPLLLPGQRVATVQGYVDEAAFKRYYPDLVLVNYPSNVAAFDAVFFGREPLLLSDPHSLHYLNSERFDKIRQRSQAQPAIAADGFRFAVSADSPRLLALLNHALAGVSDITHSLIFSQWNGPIRDIVERPSELYSAEELAWLATAGPVRVWLMDDLYPYGVRDYDNQLTGMSVEMLEKISRRSGLRFEFVSYGSELARNEALLRGELDLIGAISRPVAESYRLRPSLPYATDDIYVLVARKGDALSGDLAQLAGKRVGSTHYNPIARRLDNSRVSYLESADEAMAAVDDGRLDAAIVPLYFAQHAVECGRLSQIRIAGPADNQPIRMGFASLPGNRMLMDVIDKTILSIAPNELATMSYQWRNRKLPAPTFMERNAPYFYLLLAGLFAVALLLLYRNRMLNRLARSEQASRRQLEEHVRFIEALGESLPHPIVVRDKRGKVILCNSKYLAILNAPIERVLGTSFAEGLKGLLGAEAITTLEQDFQQVLQSGSPILSDRIFSQRGPRQFVYHWMVPYFDYRGAISGVINGWIDITERKTMEEALRRAKEQADRASRAKSDFLATMSHEIRTPMNAILGMLELASQDPALATYTGEQLRIASESANGLLDLIGDVLDISSIESGQLTLAPEPCELAPLLQSVARAFAGMAEQKGLNYRVELDPLPRVLIDGPRLRQIVFNLLGNAIKFTERGEVSLQASLVGSAEQPQLHLLIRDSGVGIAPDKLPGLFNPFYRAHDPYQFAGTGLGLNIARMLCQLMGGKIAVSSELGAGTELRIRLPLTPLAPALECEPLPAPLDAESAMVPSPKRPSPPAAAGRLRVLVVDDNHANQVLLRQQLKHLGHEVSVRGNGAEALRAIQNQDFSLIITDCQMPLMDGFELTRRLRARGHTLPIWGFTAHATARERERCLAAGMDECLYKPIGLARLRTALASLEQSGAGALSPV
>NZ_CP038513.1|WP_171280936.1|4398727_4399405_+|Crp/Fnr-family-transcriptional-regulator
MQLKPLLKGRFQPHWQAGHDLIEQVVSSCITERRLIPEGEPLMRQGEPLRDLVLVKSGRIAMGHTAMNGRRFQLGTLECDHQLFGEMEFFTGYRCQLDIIAEESLEVARIDGEQLEQALVAHPKVALFFATAIAIDYQDTVDIFTCRMLYPISYNIALDLYHSHCHDNPVNGFRKGYQEAERFGTTDRVYRRAVKELMDKGLVERGEEGLQIRDLAGLRAFLEQP
>NZ_CP038513.1|WP_124243595.1|4399483_4400647_-|MFS-transporter-TsgA
MNNKLSLTAISFLANFVMAGFATQFGMLIDPIAAKFGADVNQVASIFSLLNGGALAGTIAAFFLIEKVGLKRMTLICYGLIALAAASLHLTGSLYVVMAAMTVIGLCGGVGLCIAGTLVVSVWQARMQSTMLVVQDATFNVAGVVFPLITTYTLTHAMAWSWSYLAVGVVALATMLVAVLTNFRSCEAGGESAGNEHSEWNLGIISGGLGLFLGMLALYTFLTWAPMFVKNKFGIPFEEAGNIITQYWTAALLGALVSTAIVTRVAIRTFLLVIITLAMGMTALIVTTDNLSQLPYLTYGYGFVCAALYNAFIAYGVSFVRQASSKNVSYILISGSAGAMFSPAISALFEQVIGLQAVMYAIPLIYGVILAMLVASLRMARPQPCLA
>NZ_CP038513.1|WP_005303072.1|4400700_4401402_-|purine-nucleoside-phosphorylase
MTAHINANPGDFAETVIMPGDPLRARYIAETFLTDAREVTNVRNMLGYTGYYNGQRISVMGHGMGIPSMVLYAHELVNDFGVKRIIRIGSLGATQRHVQMRDVILAQAAGTDSPTNAKRSAGYQMATSADFALLHKAFTKAQEKAIPVKVGNIFTGDLYYDPDENLIPALEKFGVLGIDMEVAGLYGLAHQQGIEALAILTVSDHCLTGEETTAEERQLSFNQMIELALHTAL
>NZ_CP038513.1|WP_171280937.1|4401687_4402068_-|hypothetical-protein
MKRIAILFGLLCGSVLLANPVFANDTAQLQCEAQAAAKKLNGAAKTSFVGKCVKDAAGAATGECEKAAADKKLAGAAKNSFIQKCVKTGAAVDPAAKCEKAAADKKLAGAAKNSFVQKCVKDSAAK
>NZ_CP038513.1|WP_080688898.1|4402611_4403541_+|DUF1837-domain-containing-protein
MEFDVVIEDDFINLCLDDDLEPIKNKKVLSLINDYQDGKWRHSKFHSFIWDNIAETSLSFSERECLVDQSHTKLVEAARSLRLTDSENDIGKGSELAEIVLYGIMKHYYGALPVVPKIFYKQNSQDNAKGADSVHLVIDSNNDFTIWFGEAKFFNDINDSRLGEIVKSVGNSLNTDKLKRENSIITNVSDINKLVTDDALCHEIKLALSNRASIDNIKPRLHVPILLLHECEITSSCSSLNHEYKKNIVNYHIERATSYFKKHIKQLSSIHLYESVTFHLILFPVPNKAKIVDRFVGDVIRYKEAASDD
>NZ_CP038513.1|WP_171280938.1|4405688_4407260_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MTHIACHINALQLPFGACSVPLTFTLPAAGCTLIGRNGIGKSLLLELLAGQRRAVSGTIEWLTPINWLSQFAPAQAHDGAASVADLIGWGEPLRALERIEQGSCALDDFERLADRWNLRSDLADLLAEAGLRLDAHAPVSTLSGGQLTRLRLLALFARSAHFLLLDEPDNHLDASGIAWLSQRLASHSGGYLLVSHDRRLLNQGSQLLELGEQGLQSASLSFEVFLAQQTELQAARSARLAQAERREKAAARSVQKVREQAARRASQGRRERGSQAKILLDFKAEQAGKSLGKVLDRHERGHSAQVEARAEAAAALAAVQPLVMQWPAESDRKGAAQPLVITAARHTRWHDQQVDLVLQRGARCLLAGGNGSGKSSLLQMLRGELVPEAGSFRINGRLACLDQGLSLIARDLSPLANLLAVAPTLSESDARTRLAGIALRGDRALMPCHGLSGGERLKLGLLMVLVQLPDLLLLDEPDNHLDHASRQLLTQVLADYPGTLLLVSHDPDFVAGVGIEREYWLEG
>NZ_CP038513.1|WP_171280939.1|4407640_4408066_-|SgcJ/EcaC-family-oxidoreductase
MNQHPLRTLIETCDAAISRRDFDALMAFYAEDAALVVKPGMMVRGIPAIRRAFTAISDYFQGQLKVEQGAMEVIEGADNALVIMETRLNYPDGQGGLTDETRRATYVFRKEADGQWRCTIDNSYGTALLTAVGVDVRPSTD
>NZ_CP038513.1|WP_171280940.1|4408158_4409433_-|threonine-synthase
MNLYNIKDKSEQVSFAQAVRQGLGREQGLFFPEQLEPLADVDALLDLPLVERSARILSHLLGDEVPAPQVHELVKAAFTFPAPLVKLKDGTYALELFHGPTLAFKDFGGRFMAQCLAAFRTNDKITILTATSGDTGAAVAHAFYGLEGIEVVILYPKGKISPLQEALFCTLGGNIRTIAIDGDFDACQALVKQSFDDEALKKAIGLNSANSINISRLLAQVCYYFEAVAQLPKADRAKAVISVPSGNFGNLTAGLIAKALGLPVKRFIAATNANDTVPRYLKTGQWEPHQTVATLSNAMDVSRPNNWPRVEELCRRNGWALETLGSGMRSDAETRDSLKRLHQLDYLCEPHGAIAWDLLGEQLAEDEVGVFLCTAHPAKFKESVDEILGLDVPLPGPLAKHAVLPLLSHNLPAEFAPLRSFLLG

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Crispr_ID: NZ_CP038513_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038513_15

4827389-4827534

Orphan

Consensus_repeat	Method
ATGGCCTGTAAAAAGGTGACCTTTCCGGTCCTAGGAGGTTGAGAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038513_15

>merge|NZ_CP038513|15|4827389-4827534|CRISPRCasFinder
ATGGCCTGTAAAAAGGTGACCTTTCCGGTCCTAGGAGGTTGAGAGTACCGACACCTGAAAAGCGCCCATAAAAATGAAGCCCAATATCATCAAGACCATAATGGCCTGTAAAAAGGCGACCTTTCCGGTCCTAGGAGGTTGAGAGT

>NZ_CP038513|15|12|4827389-4827534|CRISPRCasFinder
ATGGCCTGTAAAAAGGTGACCTTTCCGGTCCTAGGAGGTTGAGAGT	ACCGACACCTGAAAAGCGCCCATAAAAATGAAGCCCAATATCATCAAGACCATA
ATGGCCTGTAAAAAGGCGACCTTTCCGGTCCTAGGAGGTTGAGAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038513.1\|WP_011707127.1\|4835769_4836063_+\|DUF1315-family-protein	unknown	unknown	gnl\|CDD\|225681
NZ_CP038513.1\|WP_171281137.1\|4832736_4833294_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240042
NZ_CP038513.1\|WP_017409322.1\|4834298_4835729_+\|glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236219
NZ_CP038513.1\|WP_171281132.1\|4823017_4824034_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NZ_CP038513.1\|WP_011707121.1\|4827851_4828400_-\|NAD(P)H-nitroreductase	unknown	unknown	gnl\|CDD\|182761
NZ_CP038513.1\|WP_016351764.1\|4837812_4839012_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NZ_CP038513.1\|WP_024944285.1\|4820614_4822042_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273920
NZ_CP038513.1\|WP_171281136.1\|4828506_4830522_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
NZ_CP038513.1\|WP_011707113.1\|4817337_4818678_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NZ_CP038513.1\|WP_011707132.1\|4839194_4841066_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038513.1\|WP_011707130.1\|4836290_4837298_-\|asparaginase	unknown	unknown	gnl\|CDD\|181876
NZ_CP038513.1\|WP_016351749.1\|4818790_4819069_+\|YhdT-family-protein	unknown	unknown	gnl\|CDD\|377626
NZ_CP038513.1\|WP_043162024.1\|4830832_4832677_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|182860
NZ_CP038513.1\|WP_011707112.1\|4816866_4817322_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP038513.1\|WP_171281134.1\|4825688_4826666_+\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP038513.1\|WP_171281133.1\|4824560_4825439_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP038513.1\|WP_171281130.1\|4819058_4820537_+\|sodium/pantothenate-symporter	unknown	unknown	gnl\|CDD\|236519
NZ_CP038513.1\|WP_171281131.1\|4822044_4822917_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP038513.1\|WP_171281135.1\|4826739_4827303_+\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP038513.1\|WP_039214748.1\|4833300_4834101_-\|DUF2989-domain-containing-protein	unknown	unknown	gnl\|CDD\|371419

Protein	Function_ID	Function_description	E-value
NZ_CP038513.1\|WP_011707127.1\|4835769_4836063_+\|DUF1315-family-protein	gnl\|CDD\|225681	COG3139, COG3139, Uncharacterized protein conserved in bacteria [Function unknown].	1.20717e-28
NZ_CP038513.1\|WP_171281137.1\|4832736_4833294_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240042	cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.57918e-38
NZ_CP038513.1\|WP_017409322.1\|4834298_4835729_+\|glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236219	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP038513.1\|WP_171281132.1\|4823017_4824034_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP038513.1\|WP_011707121.1\|4827851_4828400_-\|NAD(P)H-nitroreductase	gnl\|CDD\|182761	PRK10828, PRK10828, putative oxidoreductase; Provisional.	4.69007e-88
NZ_CP038513.1\|WP_016351764.1\|4837812_4839012_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	1.81318e-176
NZ_CP038513.1\|WP_024944285.1\|4820614_4822042_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273920	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.37516e-94
NZ_CP038513.1\|WP_171281136.1\|4828506_4830522_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
NZ_CP038513.1\|WP_011707113.1\|4817337_4818678_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NZ_CP038513.1\|WP_011707132.1\|4839194_4841066_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	6.9875e-70
NZ_CP038513.1\|WP_011707130.1\|4836290_4837298_-\|asparaginase	gnl\|CDD\|181876	PRK09461, ansA, cytoplasmic asparaginase I; Provisional.	0
NZ_CP038513.1\|WP_016351749.1\|4818790_4819069_+\|YhdT-family-protein	gnl\|CDD\|377626	pfam06196, DUF997, Protein of unknown function (DUF997). Family of predicted bacterial membrane protein with unknown function.	7.74569e-21
NZ_CP038513.1\|WP_043162024.1\|4830832_4832677_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|182860	PRK10949, PRK10949, signal peptide peptidase SppA.	0
NZ_CP038513.1\|WP_011707112.1\|4816866_4817322_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	1.86945e-78
NZ_CP038513.1\|WP_171281134.1\|4825688_4826666_+\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	2.6324e-142
NZ_CP038513.1\|WP_171281133.1\|4824560_4825439_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	6.9706e-140
NZ_CP038513.1\|WP_171281130.1\|4819058_4820537_+\|sodium/pantothenate-symporter	gnl\|CDD\|236519	PRK09442, panF, sodium/pantothenate symporter.	0
NZ_CP038513.1\|WP_171281131.1\|4822044_4822917_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.33154e-69
NZ_CP038513.1\|WP_171281135.1\|4826739_4827303_+\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.87744e-91
NZ_CP038513.1\|WP_039214748.1\|4833300_4834101_-\|DUF2989-domain-containing-protein	gnl\|CDD\|371419	pfam11207, DUF2989, Protein of unknown function (DUF2989). Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.	1.77033e-90

>NZ_CP038513.1|WP_171281135.1|4826739_4827303_+|sugar-O-acetyltransferase
MTEYDKMIASQPYNCMALELDLLRRETARLYRRFNRSDEEDEQLALLQQIVGELAQGAFICPPLYCTYGRHIHLGKRSYINMGATLLDNAPIRIGAEVMIGPNVQIYTAAHALDADERIQGVETALPVTIEDRVWIGGGAILLPGVTIGREAIVGAGAVVTKDVPAGARVVGNPARVLPAKGKTQVS
>NZ_CP038513.1|WP_171281134.1|4825688_4826666_+|D-2-hydroxyacid-dehydrogenase-family-protein
MRIAILDDYQDQVRHLPCFTRLAGHDVTILTQSEPDPERLAAKLAGVEALVLIRERTRIDEALLRRLPSLRLISQTGKISQHIDPLLCQRHGVAVAEGIGSPVAPAELCWALIMAASRHLPAYCHALAQGQWQQSGTLGLGRTLQGLTLGIWGYGKIGRLVAGYGRAFGMSVLIWGSEGSRQQAERDGHASASDKEAFFRDADILSLHLRLHEATRGCVTRTDLARMKADSLLVNVSRAELVEPGALYAELAANPTRRAALDVFDAEPATAQSEPLLRLPNVLATPHLGYVERNSYQLYFQAAFDNLIAFAEGRPTNLVLPVAGR
>NZ_CP038513.1|WP_171281133.1|4824560_4825439_+|50S-ribosomal-protein-L11-methyltransferase
MPWIQIRINATAKTADKVSNMLLGRGAQAVTFMDAKDVPVYEPMPGETPLWGETEVMGLFDAETDPAPTIAFFQQIFGEDVGYKVEQLEDKDWVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERNGVADQIELYLPADQPQDVEADVVVANILAGPLRELAPLIAGHGKAGSLMALSGVLESQAPELETIYGQWFEMDPTAVKEEWCRLSGRKLG
>NZ_CP038513.1|WP_171281132.1|4823017_4824034_+|zinc-binding-alcohol-dehydrogenase-family-protein
MKAIALTHYLPSDHPHCFIEANLADPTPGPHDLLVRIKATSINPVDTKVRAPKAKVESSPRVLGWDAVGEVIAVGPEVTLFKAGDRVWYAGDISRSGSNSALQLVDERIAALAPTSLSDLEAAALPLTAITAWETLFERMRLTRESSGKLLIIGGAGGVGSIAIQLARQLTGMEVIATASRPETRAWCLQMGAHQVVSHHQLQEELTALGITQVDAIFCTNATEQHWDAMASLISPFGHICTIAESSVPWDLSLLKSKSVTFSQEFMFTRSLFQTPDMIEQHNLLGLVAALVDQGVVKTTLSKVVAELTPATLAQAHAEVEAGRMVGKLVIDMSQFGN
>NZ_CP038513.1|WP_171281131.1|4822044_4822917_-|LysR-family-transcriptional-regulator
MNNVELELMGLFATVVEQGSFTGAAELLGMPKSSVSQKISRLESQLGVRLLQRTTRRLSLTPQGEVYVEQCRALLALARSANLAMARLRAAPAGRVRITAPEATGTLLLGRILAEFRALYPEVVLELTLCDEQLDLVGEGYDLALRAAPLKDSSLICRRIGQVPRHLVAAPAYLVAHGTPQQLSELGRYACLVHASLPVWPLQEGGWRPQGACISNSLLALRELAINEGGIALLPHHVCEGDLAAGRLQKVLPSHPIPANPFYLIYPSREHLAPALRSLMDFVAERLPFA
>NZ_CP038513.1|WP_024944285.1|4820614_4822042_+|PTS-transporter-subunit-EIIC
MPVQNARQILTQALQRLGYALLLPVSILPLAALLYRLGQPDVLDLAVLSLTGRALFSQMPLIYAVAIAFGLSRQGEGTQALAGAVNFLLLSSALGTLAPGLHSDMICGLLAGLTTAIVYPWLKRHPMPHWLRLVNGDFTSLLASALTCLLLAFPLALLWPLLEQGITLLASELLTTPFGAFCYGVLNRLLIPLGLHQVLGSLIGLGESNLQALASAQPLHEGYVAGLYPIIMFGLPGACFAIWLHRQRMQRLPQGGLLLTLALTSALVGITEPIEFLFAFTAPWLFLAHALLTGLSLATCSALGIKVGSYFSAGLLDLVLSYHAGEHSFWLIPVGILFFVAYTLLFYQLLERTPLSLPSKPIAPEHPRLASVAPSDPQMLAIQYLKVLGGMDNLQAMSVCLTRLSLRVRDISLVDQSRLLGLGCLSWIQLNDHQLVLVLGPNASLIEGQIRMLAERQSVPLGLKPNQESAGQSGW
>NZ_CP038513.1|WP_171281130.1|4819058_4820537_+|sodium/pantothenate-symporter
MNLELMLPLIIYLVLVLGVGFWASRHRVGGDFVQEYFIGNRSMGGLVLAMTLVATYTSASSFIGGPGAAYKIGLGWVLLAMIQLPTVWLTLGVLGKKFAIIARRVNAVTINDMLWARYQSKAVVVLGSVTIILAFIATMVVQFIGGARLLETATGLSYQQGLLLFASCVLLYTVIGGFRAVVMTDALQGIIMLIGTGALLAGILVAGDGLPNLIHQLKVIDPKLVSPQGAGDLLTQPFMLSFWVLVCIGVVGLPHSALRCFGYRDSKALHRGILIGTIVSALLMFGMHLAGALGRAILPGMDSPDKIMPSLMMEVLPPWLAGVFLAAPMAAIMSTIDSQLIQASATLVKDLYLNYLSPEKAGQEKLEVRVPRLSLLCTLILGTLVLLAALQPPEMIIWLNLLAFGGLQAVFLWPLVLGLYWSRANGPGALASMVCGIPCYAILSQWEIKPAGLHAIVPSLALGLIAFVLVSLLTPAPSQSVRRLFEPQSSMD
>NZ_CP038513.1|WP_016351749.1|4818790_4819069_+|YhdT-family-protein
MSEAKVNRFALARREAALCLLLTLLYFLAWYGTAYFIPAEIECWDMPLWFLLSCILMPLLFIVLCGLMVDRLFVDIPLDSPPLDAKEPSHES
>NZ_CP038513.1|WP_011707113.1|4817337_4818678_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGKPASTDSYLNVPAIIAAAEVTGAVAIHPGYGFLSENADFAEVVEKSGFIFIGPRAETIRLMGDKVSAIEAMKKAGVPCVPGSDGPVDSDAKHNAAIAKRIGYPVIIKAAGGGGGRGMRVVRSEAELSAAIALTKSEAGQFFKNDMVYMEKYLENPRHIEIQVLADGQGNALYLGERDCSMQRRHQKVVEEAPAPGITEEMRKFIGERCVRACIEIGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTELVTSVDLIKEQLRIAAGQPLSITQQDIRIRGHAIECRINAEDPATFMPSPGLIQRFHAPGGLGVRWDSHIYAGYKVPPYYDSMIGKLICYGENRDVAIARMRQALDELVVEGIKTNVSLQKEIMKDENFQHGGTNIHYLHKKLGL
>NZ_CP038513.1|WP_011707112.1|4816866_4817322_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDIRKIKKLIELVEESGIAELEISEGEESVRISRNFSGQVTAAPQMIMQQAAAPVAAPAAAPAAAAPAADAIPSGHLMRSPMVGSFYRSSSPEAKPFVEVGQHVNVGDTLCIVEAMKMMNQIESDKAGVIKAILVENGQAVEFDEPLFIIE
>NZ_CP038513.1|WP_011707121.1|4827851_4828400_-|NAD(P)H-nitroreductase
MDALHLLLNRHSCGRLAEPAPSGEVLDNILKAGLRAPDHGTLTPWQFILFEGEGRERLGTLLAQAARSRGEDEESIKKCQEAPLRAPLLIAVATRYQEHPKVPRLEQELSAGCALMAMQMAAQAQGFNGIWRSGWFIFDEQINEGLGLTPEDQLVGFLYLGTPMLEARKLRELPVSEFVRRF
>NZ_CP038513.1|WP_171281136.1|4828506_4830522_-|NADPH-dependent-2,4-dienoyl-CoA-reductase
MSRYPTLLTPLDLGFTQLRNRVLMGSMHTGLEEEKGGFDKLAAFYGERARGGVGLIVTGGIAPNLRGRLVPHGSQLSFPWQVAKHKKVTSAVHQEGGKIALQILHAGRYAYHPFSLAPSALKAPISPFKPRAMSERQIRGTIRDFAATAQLARAAGYDGVEVMGSEGYLINQFICERTNKRTDGWGGSSENRMRFPVEIVRAIRERVGPDFIIIFRLSMLDLVEQGSSLEEVIALGKALEQVGVTLINTGIGWHEARIPTIATSVPRGAFSWVTAELKKHLKVPLITTNRINTPEVAERILAGGEADMVSMARPFLADPEFVIKAAENRADEINTCIACNQACLDHVFKQKRASCLVNPRACFETELTFGRVPQPKRLAVVGAGPAGLAFACYAAERGHQVSLFDQASEIGGQFNFAKQIPGKEEFHETLRYFARRLEKCGVELYLGQRQSAESLLGGGFDEVILATGIRPRTPNIPGIEHAKVMSYLDVLRDHKPVGEKVAVIGAGGIGFDVAEYLVEGKGDRSRDHWLKEWGIDKQLGERGGLMAPVIDAPERQVWLLQRKESKVGDGLGKTTGWIHRTVLKNRKVEMLSGVQYLRIDDEGLHIQVGEQQQCLPVDQVIICAGQEPLKELQAGLQAAGKPVHIIGGADVAAELDAKRAIRQGAELAAVI
>NZ_CP038513.1|WP_043162024.1|4830832_4832677_+|signal-peptide-peptidase-SppA
MSIFKGLGWLFRSLWRLLNFTRLMLVNLLFLVVVLIIVFSVSQKEAPSAPIEGALTLNLSGVLVEQRSQTDPTVQLLRQVDNSDELPSEIVLSDLLWAIKSAKDDDRIKALVIKPQGLQGTSFSKLQEVASAIDAFKESGKPVIAMADFYTQGQYLLAAHADHVLLNQSGAVVIEGLGVYQTYYKSALEKLNITPHVFKVGTYKSFVEPYTRDEMSPESKEANQRWLDQLWQSYVADVAEQREIEPDAVAPGKDRFLELLRKAGGNAANYALDNGLVDQLATRDEMTQAVIKEVGESDDHGWKGVGLKEYLAAIPSQYPQSGKDEVGLIVASGAIMDGVQPAGTIGGDSLADLLADARRDDKVKALVLRVDSPGGSAFAAEQIRAELLALKQAGKPVVISMGSYAASGGYWISADADKIFASPTTLTGSIGVFGMFATIDKALSQYGVHTDGVGTTDYVGVGLTRALPEHVGQAIQLSVEDTYQRFVGLVSKGRGLSPEETEKAAEGRVWTGQDAKALGLVDEFGDQEAAIKAAAELANLKEWQVTPIEQEESAKDKFLRQLFDSSAQVLASHLQSWLPAGLGKALVEVNRSLDPLTRFNDPQGTYALCPVCTP
>NZ_CP038513.1|WP_171281137.1|4832736_4833294_-|NUDIX-domain-containing-protein
MNHIEPLASDWPHPFDIRLTHGRVNTDGRQLERVTVRAVVLRGDQLLLVHSRVNGDLMFPGGGIEHGECHRTALARELREECGAELVAVDALLGETREYRPAREADYDAYCIRSFYYLCQVGEAWCEPQPQPYEIRLGFTPGWFELAEALQTNKTQLAGPCPQWTVRETRVLAELHHWHGAGLLG
>NZ_CP038513.1|WP_039214748.1|4833300_4834101_-|DUF2989-domain-containing-protein
MTPFPARSLLFGLCCGLLLTACDDDRIHNICANYPALCQDLVDDGWCRYERSDIIRARYYLQAEGTERRQYELMRSLERYLKCAERSTNIEYKRAREQKSPRVEGMLAAGEQLAQLDAATRNATDPYLLLWHWTNNTNELARQQFLALEGQPVLEEPELQLALGGIYAKSEPQKAIALMQHALSLYREGEQVNGRILTSLSTLYMGQKQYGQAYLWGKVSESFQNAAEVSATRFSLYHSLSKQEQESLDSQAATLVEQLKSGTYRP
>NZ_CP038513.1|WP_017409322.1|4834298_4835729_+|glyceraldehyde-3-phosphate-dehydrogenase
MTHEHYLQAWQESQELAEAMQPLIGRLYRQQGIEITLYGRPLQNASTIDILKAHRVVRRHQGAPLPIQQSFPLLQAILALNPTAAEIDLGKLAVGYWQDHQDEAGIDDYLRAKLAPALGRGVPAPTDVVLYGFGRIGRLLARLLIERTGAANSLRLRAIVVRGGRDGDLEKRASLLRRDSVHGPFNGSIEVDVERSAIIANGTFIQVIYANSPADIDYTAYGIHDALIVDNTGVWRDEAGLSEHLKARGAARVLLTAPGKGEMKNVVFGVNHEVIGPDDKIISAASCTTNAITPVLKVMQDKYGIRHGHVETVHSYTNDQNLIDNYHKGERRGRSAALNMVMTSTGAAKAVAKALPELKGKLTGNAIRVPTPNVSLAIINLSLEQTTDRESLNAYLQQMALSSALHRQIDFSASTELVSSDMVGSRFAGIVDSQATIAEGDHCVLYVWYDNEFGYSCQVVRVMEQMAGAVRQDLPA
>NZ_CP038513.1|WP_011707127.1|4835769_4836063_+|DUF1315-family-protein
MSFQQGEFLQAIRQMPAEVYERLKTAVELGKWPDGKPLTDEQKATSLQAVMAWQAMHLDNPEHMNIGRDGEIVMKSKSELKRQYRDEEEIVRVDLNH
>NZ_CP038513.1|WP_011707130.1|4836290_4837298_-|asparaginase
MKKSIYIAYTGGTIGMQRSDHGYVPMAGFMEDCLARMPEFHRPEMPDYHIHEYAPLIDSSDMTPADWQRIAEDIKGNYDKYDGFVILHGTDTMSFTASALSFMLEDLHKPVIITGSQIPLAELRSDGQQNLLNALYIAANYPIHEVTLFFNNQLYRGNRSKKVHADGFHAFDSPNYPPLLNAGIAISLEAGELGVPSERPLVLHDITPQPIGVVTLYPGISAEVIANILQQPVRALILLSFGVGNAPQNPAMLALLSEASARGVIIVNLSQCLHGKVNMGGYATGNALSRAGVISGFDMTAEAALTKLHFLLSQDLPAPRIRELMQQSLRGELTP
>NZ_CP038513.1|WP_016351764.1|4837812_4839012_+|sodium/glutamate-symporter
MLQLDSYATLVAATLVLLLGRLLVTRVGLLRTFNIPKPVAGGLVVALVLLLLRSTLQMELQFDTSLQTPLMLAFFASIGLSADLASLKRGGKAVLTFLLVVTGLLLVQNSLGVGLATLLGLDPHMGLLAGSITLSGGHGTGAAWGATFTEKYGVQSAAELAIACATFGLVLGGLIGGPVARYLVKKVKVPGEEHNRDDAPQGFEMPDMERPLTTFSLIETLALIAISLKGGEMLSAYLKGGAFELPVFVCVLFVGVLLRNVLTLLNWHEVSDREVSLLGNVSLSLFLAMALMSLRLWDLANLALPIFVLLAAQTVAMALYAIFVTFRVMGSNYDAAVLAAGHCGFGLGATPTAIANMQAITQRFGPSHLAFLVVPMVGAFFIDIINAMVIKLFLALPFL
>NZ_CP038513.1|WP_011707132.1|4839194_4841066_-|methyl-accepting-chemotaxis-protein
MKNLSLKQKILLSVVIALSLVILLLSWQSYTSQKSLLLQGSQEQVQRLGSQQAASVSDWLAARRDVIQALGNKAGAEPLNALQQAQVSGRFQLTYFGESGGKMNDSDPSINRDGYDPRSRGWYQEAMSKGGLIVTKPYLDVAYNIMVVTLAQPAQGGVVGGDLSIASLVEDVTKMKLPADGFAIMMHKDGTVIAYKDAAKAMKPATEIDNDLTNALIEQSKTSNSLVPAYFDNEGRDKLLWAVDIPDTDWELVLVLDKETLEAPLSSLLMTQLGLALLVLVGSILAISWLVSMLLGPLSKVSQALARIADGNGDLTQRIKIDTNDEVGQLANSFNRFVGSQHQLIGNIRKLANELNADAERSLVTNQAAVDELQRQQQEVTMVATAVTEMASATMEIAGNAENTAAAAQQSAQSSEQGKMLVNQTRQSINGLAEEVGQATEVIGELSRHAQAISGILSTIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEIQSTIETLQQTTARAVSLMQTSQGLADNSVKDADAAAAALEEITQAVSLISDMAGQIATAAEEQTQVTGEITQNTTAIKDVSDEITAAAMRDLDQAESLKGRATDLNQQVSTFIL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP038513_10	10.1\|2014513\|57\|NZ_CP038513\|PILER-CR	2014513-2014569	57	NZ_CP038513.1	2014991-2015047	0	1.0
NZ_CP038513_10	10.1\|2014513\|57\|NZ_CP038513\|PILER-CR	2014513-2014569	57	NZ_CP038513.1	2016153-2016209	0	1.0
NZ_CP038513_10	10.2\|2014622\|45\|NZ_CP038513\|PILER-CR	2014622-2014666	45	NZ_CP038513.1	2015093-2015137	0	1.0
NZ_CP038513_10	10.2\|2014622\|45\|NZ_CP038513\|PILER-CR	2014622-2014666	45	NZ_CP038513.1	2016255-2016299	0	1.0
NZ_CP038513_11	11.1\|2015252\|46\|NZ_CP038513\|PILER-CR	2015252-2015297	46	NZ_CP038513.1	2014767-2014812	0	1.0
NZ_CP038513_11	11.1\|2015252\|46\|NZ_CP038513\|PILER-CR	2015252-2015297	46	NZ_CP038513.1	2016413-2016458	0	1.0
NZ_CP038513_11	11.2\|2015349\|46\|NZ_CP038513\|PILER-CR	2015349-2015394	46	NZ_CP038513.1	2014864-2014909	0	1.0
NZ_CP038513_11	11.2\|2015349\|46\|NZ_CP038513\|PILER-CR	2015349-2015394	46	NZ_CP038513.1	2016510-2016555	0	1.0
NZ_CP038513_11	11.2\|2015349\|46\|NZ_CP038513\|PILER-CR	2015349-2015394	46	NZ_CP038513.1	2016607-2016652	0	1.0
NZ_CP038513_12	12.1\|2016947\|41\|NZ_CP038513\|PILER-CR	2016947-2016987	41	NZ_CP038513.1	2015002-2015042	0	1.0
NZ_CP038513_12	12.1\|2016947\|41\|NZ_CP038513\|PILER-CR	2016947-2016987	41	NZ_CP038513.1	2016164-2016204	0	1.0
NZ_CP038513_11	11.1\|2015252\|46\|NZ_CP038513\|PILER-CR	2015252-2015297	46	NZ_CP038513.1	2014864-2014909	1	0.978
NZ_CP038513_11	11.1\|2015252\|46\|NZ_CP038513\|PILER-CR	2015252-2015297	46	NZ_CP038513.1	2016510-2016555	1	0.978
NZ_CP038513_11	11.1\|2015252\|46\|NZ_CP038513\|PILER-CR	2015252-2015297	46	NZ_CP038513.1	2016607-2016652	1	0.978
NZ_CP038513_11	11.2\|2015349\|46\|NZ_CP038513\|PILER-CR	2015349-2015394	46	NZ_CP038513.1	2014767-2014812	1	0.978
NZ_CP038513_11	11.2\|2015349\|46\|NZ_CP038513\|PILER-CR	2015349-2015394	46	NZ_CP038513.1	2016413-2016458	1	0.978
NZ_CP038513_12	12.1\|2016947\|41\|NZ_CP038513\|PILER-CR	2016947-2016987	41	NZ_CP038513.1	2013746-2013786	1	0.976
NZ_CP038513_12	12.2\|2017044\|40\|NZ_CP038513\|PILER-CR	2017044-2017083	40	NZ_CP038513.1	2017132-2017171	1	0.975
NZ_CP038513_10	10.2\|2014622\|45\|NZ_CP038513\|PILER-CR	2014622-2014666	45	NZ_CP038513.1	2014706-2014750	2	0.956
NZ_CP038513_10	10.2\|2014622\|45\|NZ_CP038513\|PILER-CR	2014622-2014666	45	NZ_CP038513.1	2015190-2015234	2	0.956
NZ_CP038513_10	10.2\|2014622\|45\|NZ_CP038513\|PILER-CR	2014622-2014666	45	NZ_CP038513.1	2016352-2016396	2	0.956
NZ_CP038513_10	10.2\|2014622\|45\|NZ_CP038513\|PILER-CR	2014622-2014666	45	NZ_CP038513.1	2017222-2017266	2	0.956
NZ_CP038513_11	11.1\|2015252\|46\|NZ_CP038513\|PILER-CR	2015252-2015297	46	NZ_CP038513.1	2013801-2013846	2	0.957
NZ_CP038513_11	11.1\|2015252\|46\|NZ_CP038513\|PILER-CR	2015252-2015297	46	NZ_CP038513.1	2017090-2017135	2	0.957

1. spacer 10.1|2014513|57|NZ_CP038513|PILER-CR matches to position: 2014991-2015047, mismatch: 0, identity: 1.0

gggccagcgggtactctggtgcagatcagcccgttgtcagccgacaatcgagttcgc	CRISPR spacer
gggccagcgggtactctggtgcagatcagcccgttgtcagccgacaatcgagttcgc	Protospacer
*********************************************************

2. spacer 10.1|2014513|57|NZ_CP038513|PILER-CR matches to position: 2016153-2016209, mismatch: 0, identity: 1.0

gggccagcgggtactctggtgcagatcagcccgttgtcagccgacaatcgagttcgc	CRISPR spacer
gggccagcgggtactctggtgcagatcagcccgttgtcagccgacaatcgagttcgc	Protospacer
*********************************************************

3. spacer 10.2|2014622|45|NZ_CP038513|PILER-CR matches to position: 2015093-2015137, mismatch: 0, identity: 1.0

actggcgctctggtgcagatcacctcgttgtcagtcgacaatgga	CRISPR spacer
actggcgctctggtgcagatcacctcgttgtcagtcgacaatgga	Protospacer
*********************************************

4. spacer 10.2|2014622|45|NZ_CP038513|PILER-CR matches to position: 2016255-2016299, mismatch: 0, identity: 1.0

actggcgctctggtgcagatcacctcgttgtcagtcgacaatgga	CRISPR spacer
actggcgctctggtgcagatcacctcgttgtcagtcgacaatgga	Protospacer
*********************************************

5. spacer 11.1|2015252|46|NZ_CP038513|PILER-CR matches to position: 2014767-2014812, mismatch: 0, identity: 1.0

atttccatttcacgctacctgtagcagttccggccagcgggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagcgggcactc	Protospacer
**********************************************

6. spacer 11.1|2015252|46|NZ_CP038513|PILER-CR matches to position: 2016413-2016458, mismatch: 0, identity: 1.0

atttccatttcacgctacctgtagcagttccggccagcgggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagcgggcactc	Protospacer
**********************************************

7. spacer 11.2|2015349|46|NZ_CP038513|PILER-CR matches to position: 2014864-2014909, mismatch: 0, identity: 1.0

atttccatttcacgctacctgtagcagttccggccagctggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagctggcactc	Protospacer
**********************************************

8. spacer 11.2|2015349|46|NZ_CP038513|PILER-CR matches to position: 2016510-2016555, mismatch: 0, identity: 1.0

atttccatttcacgctacctgtagcagttccggccagctggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagctggcactc	Protospacer
**********************************************

9. spacer 11.2|2015349|46|NZ_CP038513|PILER-CR matches to position: 2016607-2016652, mismatch: 0, identity: 1.0

atttccatttcacgctacctgtagcagttccggccagctggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagctggcactc	Protospacer
**********************************************

10. spacer 12.1|2016947|41|NZ_CP038513|PILER-CR matches to position: 2015002-2015042, mismatch: 0, identity: 1.0

tactctggtgcagatcagcccgttgtcagccgacaatcgag	CRISPR spacer
tactctggtgcagatcagcccgttgtcagccgacaatcgag	Protospacer
*****************************************

11. spacer 12.1|2016947|41|NZ_CP038513|PILER-CR matches to position: 2016164-2016204, mismatch: 0, identity: 1.0

tactctggtgcagatcagcccgttgtcagccgacaatcgag	CRISPR spacer
tactctggtgcagatcagcccgttgtcagccgacaatcgag	Protospacer
*****************************************

12. spacer 11.1|2015252|46|NZ_CP038513|PILER-CR matches to position: 2014864-2014909, mismatch: 1, identity: 0.978

atttccatttcacgctacctgtagcagttccggccagcgggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagctggcactc	Protospacer
************************************** *******

13. spacer 11.1|2015252|46|NZ_CP038513|PILER-CR matches to position: 2016510-2016555, mismatch: 1, identity: 0.978

atttccatttcacgctacctgtagcagttccggccagcgggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagctggcactc	Protospacer
************************************** *******

14. spacer 11.1|2015252|46|NZ_CP038513|PILER-CR matches to position: 2016607-2016652, mismatch: 1, identity: 0.978

atttccatttcacgctacctgtagcagttccggccagcgggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagctggcactc	Protospacer
************************************** *******

15. spacer 11.2|2015349|46|NZ_CP038513|PILER-CR matches to position: 2014767-2014812, mismatch: 1, identity: 0.978

atttccatttcacgctacctgtagcagttccggccagctggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagcgggcactc	Protospacer
************************************** *******

16. spacer 11.2|2015349|46|NZ_CP038513|PILER-CR matches to position: 2016413-2016458, mismatch: 1, identity: 0.978

atttccatttcacgctacctgtagcagttccggccagctggcactc	CRISPR spacer
atttccatttcacgctacctgtagcagttccggccagcgggcactc	Protospacer
************************************** *******

17. spacer 12.1|2016947|41|NZ_CP038513|PILER-CR matches to position: 2013746-2013786, mismatch: 1, identity: 0.976

tactctggtgcagatcagcccgttgtcagccgacaatcgag	CRISPR spacer
tattctggtgcagatcagcccgttgtcagccgacaatcgag	Protospacer
**.**************************************

18. spacer 12.2|2017044|40|NZ_CP038513|PILER-CR matches to position: 2017132-2017171, mismatch: 1, identity: 0.975

actccggctcagatcaccccgttgtcagccgacaatcgag	CRISPR spacer
actccggctcagatcaccccgttgtcagccgaccatcgag	Protospacer
********************************* ******

19. spacer 10.2|2014622|45|NZ_CP038513|PILER-CR matches to position: 2014706-2014750, mismatch: 2, identity: 0.956

actggcgctctggtgcagatcacctcgttgtcagtcgacaatgga	CRISPR spacer
actggcgctctggtgcagatcacctcgttgtcagccgacaatcga	Protospacer
**********************************.******* **

20. spacer 10.2|2014622|45|NZ_CP038513|PILER-CR matches to position: 2015190-2015234, mismatch: 2, identity: 0.956

actggcgctctggtgcagatcacctcgttgtcagtcgacaatgga	CRISPR spacer
actggcgctctggtgcagatcacctcgttgtcagccgacaatcga	Protospacer
**********************************.******* **

21. spacer 10.2|2014622|45|NZ_CP038513|PILER-CR matches to position: 2016352-2016396, mismatch: 2, identity: 0.956

actggcgctctggtgcagatcacctcgttgtcagtcgacaatgga	CRISPR spacer
actggcgctctggtgcagatcacctcgttgtcagccgacaatcga	Protospacer
**********************************.******* **

22. spacer 10.2|2014622|45|NZ_CP038513|PILER-CR matches to position: 2017222-2017266, mismatch: 2, identity: 0.956

actggcgctctggtgcagatcacctcgttgtcagtcgacaatgga	CRISPR spacer
actggcgctctggtgcagatcacctcgttgtcagccgacaatcga	Protospacer
**********************************.******* **

23. spacer 11.1|2015252|46|NZ_CP038513|PILER-CR matches to position: 2013801-2013846, mismatch: 2, identity: 0.957

atttccatttcacgctacctgtagcagttccggccagcgggcactc	CRISPR spacer
atttccatttcacgatacctgtagcagttccggccagcgggtactc	Protospacer
************** **************************.****

24. spacer 11.1|2015252|46|NZ_CP038513|PILER-CR matches to position: 2017090-2017135, mismatch: 2, identity: 0.957

atttccatttcacgctacctgtagcagttccggccagcgggcactc	CRISPR spacer
atttccatttcacgatacctgtagcagttcgggccagcgggcactc	Protospacer
************** *************** ***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP038513_4	4.1\|172108\|25\|NZ_CP038513\|CRISPRCasFinder	172108-172132	25	AP018323	Nostoc sp. HK-01 plasmid plasmid5 DNA, complete genome	37297-37321	4	0.84
NZ_CP038513_14	14.1\|4393984\|29\|NZ_CP038513\|CRISPRCasFinder	4393984-4394012	29	MG592407	Vibrio phage 1.023.O._10N.222.51.B4, partial genome	10038-10066	5	0.828
NZ_CP038513_14	14.1\|4393984\|29\|NZ_CP038513\|CRISPRCasFinder	4393984-4394012	29	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1418857-1418885	7	0.759
NZ_CP038513_14	14.1\|4393984\|29\|NZ_CP038513\|CRISPRCasFinder	4393984-4394012	29	NZ_CP011506	Burkholderia pyrrocinia strain DSM 10685 plasmid p2327, complete sequence	102315-102343	7	0.759
NZ_CP038513_14	14.1\|4393984\|29\|NZ_CP038513\|CRISPRCasFinder	4393984-4394012	29	NC_011003	Burkholderia cenocepacia J2315 plasmid pBCJ2315, complete sequence	36333-36361	7	0.759
NZ_CP038513_14	14.1\|4393984\|29\|NZ_CP038513\|CRISPRCasFinder	4393984-4394012	29	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	389449-389477	8	0.724

1. spacer 4.1|172108|25|NZ_CP038513|CRISPRCasFinder matches to AP018323 (Nostoc sp. HK-01 plasmid plasmid5 DNA, complete genome) position: , mismatch: 4, identity: 0.84

gctcttccctggacaagtccagcca	CRISPR spacer
attcttcccttgacaagcccagcca	Protospacer
..******** ******.*******

2. spacer 14.1|4393984|29|NZ_CP038513|CRISPRCasFinder matches to MG592407 (Vibrio phage 1.023.O._10N.222.51.B4, partial genome) position: , mismatch: 5, identity: 0.828

tcttcgacgtggaactgctgggtattcaa	CRISPR spacer
ttatcgacgtggaactggtcggtattcac	Protospacer
*. ************** * ********

3. spacer 14.1|4393984|29|NZ_CP038513|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacgtggaactgctgggtattcaa	CRISPR spacer
acttcgaagtggaactgctcggtatcggc	Protospacer
 ****** *********** *****. .

4. spacer 14.1|4393984|29|NZ_CP038513|CRISPRCasFinder matches to NZ_CP011506 (Burkholderia pyrrocinia strain DSM 10685 plasmid p2327, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacgtggaactgctgggtattcaa	CRISPR spacer
tgttcgacgtggcactgctgggtttcgct	Protospacer
* ********** ********** *.

5. spacer 14.1|4393984|29|NZ_CP038513|CRISPRCasFinder matches to NC_011003 (Burkholderia cenocepacia J2315 plasmid pBCJ2315, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacgtggaactgctgggtattcaa	CRISPR spacer
tgttcgacgtggcactgctgggtttcgct	Protospacer
* ********** ********** *.

6. spacer 14.1|4393984|29|NZ_CP038513|CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 8, identity: 0.724

tcttcgacgtggaactgctgggtattcaa	CRISPR spacer
gctacgacgtggaactgctgggccaccgc	Protospacer
 ** ******************.  .*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

145830 : 243983

Aeromonas_virus(66.67%)

terminase,portal,capsid,transposase,tRNA,tail,integrase,plate,head,holin

attL 170064:170121|attR 227107:227164

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049045830.1\|145830_146817_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_011707400.1\|146819_146969_+	hypothetical protein	NA	NA	NA	NA
WP_010636148.1\|147044_147470_-	hypothetical protein	NA	NA	NA	NA
WP_005305063.1\|147571_147844_-	DNA-binding protein HU-alpha	A0A249Y2G7	Serratia_phage	3.6e-11	44.2
WP_130631666.1\|147902_148088_-	hypothetical protein	NA	NA	NA	NA
WP_011707403.1\|148185_148668_+	Rsd/AlgQ family anti-sigma factor	NA	NA	NA	NA
WP_011707404.1\|148769_149150_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_011707405.1\|149221_150586_-	DNA repair protein RadA	NA	NA	NA	NA
WP_171279714.1\|150686_153065_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_011707407.1\|153191_154097_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_171279715.1\|154146_155157_-	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_017411238.1\|155277_155886_+\|transposase	transposase	NA	NA	NA	NA
WP_171279716.1\|155939_158186_+	PAS domain S-box protein	G3MA91	Bacillus_virus	6.0e-19	32.6
WP_011707410.1\|158260_158977_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_024945853.1\|159054_160263_-	phosphopentomutase	NA	NA	NA	NA
WP_171279717.1\|160277_161609_-	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	8.9e-79	39.8
WP_011707413.1\|161718_162492_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_005305103.1\|162883_163054_-	DUF1427 family protein	R4TMJ4	Halovirus	6.3e-06	60.0
WP_011707414.1\|163177_164452_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_171279718.1\|164665_165454_-	TatD family hydrolase	NA	NA	NA	NA
WP_171279719.1\|165494_166112_+	type II secretion system protein	NA	NA	NA	NA
WP_171279720.1\|166080_166263_-	DUF5363 family protein	NA	NA	NA	NA
WP_171279721.1\|166487_167840_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.3e-93	42.7
WP_016351995.1\|168174_169611_-	ammonium transporter	NA	NA	NA	NA
170064:170121	attL	NA	NA	NA	NA
WP_171279722.1\|171022_171322_-	hypothetical protein	NA	NA	NA	NA
WP_171279723.1\|171523_172072_-	hypothetical protein	NA	NA	NA	NA
WP_171279724.1\|172065_172773_-	hypothetical protein	NA	NA	NA	NA
WP_171279725.1\|172869_175281_-	hypothetical protein	NA	NA	NA	NA
WP_171279726.1\|176383_177130_+	hypothetical protein	NA	NA	NA	NA
WP_171279727.1\|177518_179723_+	hypothetical protein	NA	NA	NA	NA
WP_171279728.1\|179923_180481_-	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-20	35.1
WP_130632757.1\|180723_180939_+	hypothetical protein	NA	NA	NA	NA
WP_171279729.1\|181001_183155_-	NERD domain-containing protein	NA	NA	NA	NA
WP_171281188.1\|183518_183908_-\|terminase	terminase	A0A2K8HN72	Pseudomonas_phage	4.0e-32	57.4
WP_171279730.1\|184914_186714_-	DNA primase	Q7M2A8	Enterobacteria_phage	1.3e-93	40.5
WP_024946432.1\|186721_186955_-	hypothetical protein	NA	NA	NA	NA
WP_162791266.1\|187041_187188_+	hypothetical protein	NA	NA	NA	NA
WP_024946433.1\|187334_188129_+	hypothetical protein	NA	NA	NA	NA
WP_171279731.1\|188130_189870_+	hypothetical protein	NA	NA	NA	NA
WP_171279732.1\|189841_191575_+	dynamin family protein	NA	NA	NA	NA
WP_171279733.1\|192122_192866_-	hypothetical protein	NA	NA	NA	NA
WP_171279734.1\|193121_194147_-\|integrase	tyrosine-type recombinase/integrase	B6SCW8	Bacteriophage	2.7e-19	31.1
WP_099368947.1\|194187_195274_+\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA
WP_171279735.1\|195583_196645_-\|integrase	site-specific integrase	A5X9F3	Aeromonas_virus	2.9e-173	84.8
WP_171279736.1\|196625_197480_-	hypothetical protein	A5X9F4	Aeromonas_virus	1.0e-64	71.3
WP_171279737.1\|197489_198188_-	helix-turn-helix transcriptional regulator	A5X9F5	Aeromonas_virus	5.5e-104	81.8
WP_156853774.1\|198325_198559_+	regulator	NA	NA	NA	NA
WP_171279738.1\|198585_199095_+	phage regulatory CII family protein	A5X9F7	Aeromonas_virus	2.8e-73	81.7
WP_171279739.1\|199105_199564_+	hypothetical protein	A5X9F8	Aeromonas_virus	5.6e-73	91.4
WP_160163719.1\|199630_199807_+	hypothetical protein	NA	NA	NA	NA
WP_171279740.1\|199761_199983_+	hypothetical protein	A5X9F9	Aeromonas_virus	3.7e-22	77.6
WP_171279741.1\|199979_200171_+	hypothetical protein	A5X9G0	Aeromonas_virus	1.0e-20	77.8
WP_045525316.1\|200167_200377_+	hypothetical protein	A5X9G1	Aeromonas_virus	5.5e-28	94.1
WP_171279742.1\|200373_200910_+	DNA methyltransferase	U3PDF3	Vibrio_phage	9.7e-69	66.1
WP_010636123.1\|200906_201164_+	hypothetical protein	A5X9G3	Aeromonas_virus	5.4e-33	84.7
WP_171279743.1\|201160_203491_+	replication endonuclease	A5X9G4	Aeromonas_virus	0.0e+00	91.1
WP_171279744.1\|203487_203994_+	hypothetical protein	A5X9G5	Aeromonas_virus	5.2e-72	85.9
WP_171279745.1\|204140_205058_+	trypsin-like peptidase domain-containing protein	S5FV10	Shigella_phage	6.7e-09	25.9
WP_049045784.1\|205144_205396_-	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	1.7e-36	85.5
WP_171279746.1\|205461_206475_-\|portal	phage portal protein	A5X9H1	Aeromonas_virus	1.3e-183	91.1
WP_171279747.1\|206471_208292_-\|terminase	terminase	A5X9H3	Aeromonas_virus	0.0e+00	90.9
WP_171281189.1\|208467_209319_+\|capsid	GPO family capsid scaffolding protein	A5X9H4	Aeromonas_virus	1.1e-130	80.3
WP_171279748.1\|209329_210388_+\|capsid	phage major capsid protein, P2 family	A5X9H5	Aeromonas_virus	8.9e-183	90.7
WP_171279749.1\|210391_211120_+\|terminase	terminase endonuclease subunit	A5X9H6	Aeromonas_virus	4.6e-122	89.6
WP_049045777.1\|211233_211695_+\|head	head completion/stabilization protein	A5X9H7	Aeromonas_virus	6.4e-69	93.5
WP_171279750.1\|211691_212216_+\|tail	phage tail protein	A5X9H8	Aeromonas_virus	2.3e-86	85.4
WP_101316813.1\|212212_212899_+	phage virion morphogenesis protein	A5X9H9	Aeromonas_virus	1.2e-108	88.2
WP_171279751.1\|212903_214028_+	DUF2586 family protein	A5X9I0	Aeromonas_virus	1.3e-176	81.8
WP_019838945.1\|214031_214487_+	DUF2597 family protein	A5X9I1	Aeromonas_virus	1.4e-71	86.1
WP_171279752.1\|214490_214700_+	TraR/DksA family transcriptional regulator	A5X9I2	Aeromonas_virus	2.9e-21	71.2
WP_019838947.1\|214721_215048_+\|holin	phage holin, lambda family	A5X9I3	Aeromonas_virus	2.8e-26	60.4
WP_171279753.1\|215034_215496_+	glycoside hydrolase family 104 protein	G0ZT35	Aeromonas_phage	3.3e-81	92.2
WP_171279754.1\|215492_215936_+	hypothetical protein	NA	NA	NA	NA
WP_171279755.1\|216059_216323_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.0e-31	80.5
WP_171279756.1\|216514_218284_+\|tail	phage tail tape measure protein	A5X9I9	Aeromonas_virus	3.4e-259	76.1
WP_016352032.1\|218283_218607_+	DUF2590 family protein	A5X9J0	Aeromonas_virus	1.1e-46	86.9
WP_171279757.1\|218603_219791_+\|plate	baseplate J/gp47 family protein	A5X9J1	Aeromonas_virus	3.9e-179	80.3
WP_171279758.1\|219783_220464_+\|tail	phage tail protein	A5X9J2	Aeromonas_virus	1.6e-87	76.3
WP_171281190.1\|223611_224181_+	hypothetical protein	A5X9J6	Aeromonas_virus	3.6e-45	53.7
WP_171279759.1\|224177_224738_+	hypothetical protein	A5X9J7	Aeromonas_virus	1.5e-59	71.9
WP_171279760.1\|224734_226345_+	hypothetical protein	A5X9J8	Aeromonas_virus	1.6e-236	73.2
WP_171279761.1\|227336_227858_+	RDD family protein	NA	NA	NA	NA
227107:227164	attR	NA	NA	NA	NA
WP_011707420.1\|228021_229092_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_005305138.1\|229117_230230_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_011707422.1\|230402_231911_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	4.4e-50	37.6
WP_168755755.1\|232073_232529_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_171279762.1\|232594_235447_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.4e-136	36.0
WP_171279763.1\|235633_236926_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_016352045.1\|236944_237610_+	DedA family protein	NA	NA	NA	NA
WP_011707427.1\|237749_238577_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_005305164.1\|239812_240001_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	2.9e-12	66.7
WP_011707428.1\|240094_241342_-	aspartate kinase	NA	NA	NA	NA
WP_024945613.1\|241358_243983_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	6.2e-76	37.9

DBSCAN-SWA_2

1508610 : 1601666

107

Salmonella_phage(17.02%)

terminase,capsid,portal,transposase,tRNA,tail,protease,plate,lysis,integrase,head,holin

attL 1588993:1589010|attR 1603959:1603976

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171280060.1\|1508610_1509573_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_171280061.1\|1509683_1512092_-	zinc/cadmium/mercury/lead-transporting ATPase	E4ZFI9	Streptococcus_phage	8.7e-117	38.1
WP_011704596.1\|1512309_1512810_+	thiol peroxidase	NA	NA	NA	NA
WP_011704597.1\|1512872_1513691_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011704598.1\|1513859_1515080_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.5e-44	31.8
WP_171280062.1\|1515175_1516669_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_011704600.1\|1516742_1517531_-	hypothetical protein	NA	NA	NA	NA
WP_171280063.1\|1517527_1518844_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	2.4e-28	33.2
WP_041218181.1\|1519052_1520612_-	methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.9e-35	49.7
WP_171280064.1\|1520853_1521684_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011704604.1\|1521847_1522138_-	hypothetical protein	NA	NA	NA	NA
WP_011704605.1\|1522202_1522577_-	YacL family protein	NA	NA	NA	NA
WP_169853739.1\|1522759_1522912_+	hypothetical protein	NA	NA	NA	NA
WP_171280065.1\|1522898_1524014_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011704607.1\|1524133_1525396_+	GntP family permease	NA	NA	NA	NA
WP_171280066.1\|1525405_1526539_+	glycerate kinase	W6LM47	Streptococcus_phage	1.3e-46	40.1
WP_171280067.1\|1526749_1527313_+	NnrU family protein	NA	NA	NA	NA
WP_171280068.1\|1527375_1527909_+	glutathione peroxidase	NA	NA	NA	NA
WP_171281204.1\|1527991_1528927_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011704612.1\|1529109_1530306_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_171281205.1\|1530569_1531058_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	6.2e-22	43.0
WP_011704614.1\|1531096_1531513_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_011704615.1\|1531714_1532053_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_060390419.1\|1532257_1533268_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_171280069.1\|1533307_1534933_+	iron ABC transporter permease	NA	NA	NA	NA
WP_171280070.1\|1535002_1536037_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-26	34.0
WP_171280071.1\|1536140_1537046_+	Dyp-type peroxidase	NA	NA	NA	NA
WP_005308670.1\|1537132_1537603_-	transcriptional regulator ArgR	NA	NA	NA	NA
WP_171280072.1\|1537804_1538545_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.6e-21	32.9
WP_171280073.1\|1538570_1539308_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_171280074.1\|1539311_1539962_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_171280075.1\|1539964_1540627_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_011704623.1\|1540848_1541784_+	malate dehydrogenase	NA	NA	NA	NA
WP_042064889.1\|1542217_1542814_+	sel1 repeat family protein	NA	NA	NA	NA
WP_171280076.1\|1542916_1544110_-	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_171280077.1\|1544220_1544688_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_011704627.1\|1544721_1546002_-	DUF21 domain-containing protein	NA	NA	NA	NA
WP_011704628.1\|1546042_1546834_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_011704629.1\|1547119_1548496_+	signal recognition particle protein	NA	NA	NA	NA
WP_005341383.1\|1548680_1548929_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_011704630.1\|1548953_1549475_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_011704631.1\|1549509_1550259_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_005313505.1\|1550291_1550639_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_118881933.1\|1550742_1551072_-	1,4-alpha-glucan branching protein	NA	NA	NA	NA
WP_118881932.1\|1551154_1551829_-	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA
WP_011704634.1\|1552562_1553090_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_076361506.1\|1553104_1555384_+	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	5.5e-12	28.5
WP_011704636.1\|1555451_1556276_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_118881930.1\|1556275_1557070_+	thymidylate synthase	A6M9A2	Geobacillus_virus	8.9e-119	72.7
WP_024944573.1\|1557296_1558487_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	8.5e-89	51.7
WP_118881929.1\|1558483_1558891_+	hypothetical protein	NA	NA	NA	NA
WP_171280078.1\|1559008_1560169_-	phage late control D family protein	E5E3P7	Burkholderia_phage	2.2e-97	57.1
WP_171280079.1\|1560168_1560660_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.2e-34	49.7
WP_171280080.1\|1560672_1563108_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	1.6e-126	41.6
WP_029306174.1\|1563104_1563236_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_171280081.1\|1563244_1563529_-\|tail	phage tail assembly protein	E5FFG7	Burkholderia_phage	4.9e-19	54.8
WP_171280082.1\|1563592_1564111_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.5e-50	57.0
WP_171280083.1\|1564120_1565299_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.7e-134	62.0
WP_171280084.1\|1565524_1566571_-	acyltransferase	NA	NA	NA	NA
WP_171280085.1\|1566678_1566861_-	hypothetical protein	NA	NA	NA	NA
WP_171280086.1\|1566874_1568071_-\|tail	phage tail protein	A0A1B0XUH9	Freshwater_phage	1.7e-25	67.7
WP_171280087.1\|1568072_1569488_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.3e-32	50.3
WP_171280088.1\|1569487_1569889_-	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	3.3e-29	51.1
WP_171280089.1\|1569899_1570781_-\|plate	baseplate J/gp47 family protein	A0A218M4K5	Erwinia_phage	1.6e-68	52.2
WP_171280090.1\|1570777_1571137_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	2.1e-22	50.4
WP_171280091.1\|1571133_1571706_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	6.4e-26	40.8
WP_171280092.1\|1571784_1572243_-	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	3.2e-28	47.3
WP_171280093.1\|1572224_1572695_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	1.1e-31	49.6
WP_171280094.1\|1572805_1573279_-\|lysis	phage lysis regulatory protein LysB	E5FFH9	Burkholderia_phage	3.8e-08	36.8
WP_171280095.1\|1573268_1574090_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	8.2e-67	53.0
WP_171280096.1\|1574086_1574392_-\|holin	phage holin family protein	E5E3R8	Burkholderia_phage	4.8e-12	47.1
WP_017411174.1\|1574393_1574756_-	membrane protein	E5E3R9	Burkholderia_phage	2.3e-13	38.8
WP_171281206.1\|1574771_1575002_-	TraR/DksA C4-type zinc finger protein	A0A1S6L007	Salmonella_phage	5.0e-06	39.4
WP_171280097.1\|1575004_1575208_-\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	6.1e-16	59.1
WP_171280098.1\|1575207_1575678_-\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	7.1e-31	50.3
WP_171280099.1\|1575784_1576468_-\|terminase	terminase	A4PE31	Ralstonia_virus	2.1e-44	45.6
WP_171280100.1\|1576477_1577530_-\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	6.3e-112	59.1
WP_171280101.1\|1577542_1578373_-\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	7.5e-52	46.4
WP_171280102.1\|1578522_1580289_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	1.7e-239	69.6
WP_171280103.1\|1580288_1581362_+\|portal	phage portal protein	A4PE27	Ralstonia_virus	6.4e-112	54.2
WP_171280104.1\|1581939_1582572_-	hypothetical protein	NA	NA	NA	NA
WP_171280105.1\|1582659_1583001_-	hypothetical protein	G9L6B6	Escherichia_phage	8.2e-05	33.0
WP_171280106.1\|1582997_1583348_-	hypothetical protein	NA	NA	NA	NA
WP_171280107.1\|1583344_1583590_-	hypothetical protein	A5X9G6	Aeromonas_virus	8.4e-36	91.4
WP_171280108.1\|1583586_1584210_-	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	1.1e-44	47.7
WP_171280109.1\|1584220_1586608_-	replication endonuclease	A5X9G4	Aeromonas_virus	1.6e-99	35.2
WP_171280110.1\|1586604_1586976_-	hypothetical protein	NA	NA	NA	NA
WP_171280111.1\|1587053_1587260_-	hypothetical protein	NA	NA	NA	NA
WP_171280112.1\|1587256_1587574_-	hypothetical protein	A5X9G2	Aeromonas_virus	1.2e-42	81.4
WP_171280113.1\|1587570_1587753_-	hypothetical protein	NA	NA	NA	NA
WP_170921841.1\|1587749_1587926_-	hypothetical protein	NA	NA	NA	NA
WP_171280114.1\|1587922_1588441_-	hypothetical protein	NA	NA	NA	NA
WP_171280115.1\|1588504_1588948_-	hypothetical protein	NA	NA	NA	NA
WP_104455397.1\|1588963_1589182_-	hypothetical protein	NA	NA	NA	NA
1588993:1589010	attL	NA	NA	NA	NA
WP_139738068.1\|1589178_1589436_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_171280116.1\|1589447_1589960_-	phage regulatory CII family protein	A5X9F7	Aeromonas_virus	2.5e-29	44.5
WP_048209136.1\|1589987_1590197_-	regulator for prophage	NA	NA	NA	NA
WP_171281207.1\|1590828_1591158_+	S24 family peptidase	A5X9F5	Aeromonas_virus	1.1e-38	67.9
WP_171280117.1\|1591157_1593218_+	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_171280118.1\|1593214_1594282_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4S6G4	Salmonella_phage	1.4e-103	56.6
WP_171280119.1\|1594333_1595266_+	transcriptional activator NhaR	NA	NA	NA	NA
WP_016349423.1\|1595315_1595618_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005308808.1\|1595668_1595932_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_016349424.1\|1596123_1597689_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_162901756.1\|1597728_1597926_-	hypothetical protein	NA	NA	NA	NA
WP_017409028.1\|1597830_1598805_+	bifunctional riboflavin kinase/FAD synthetase	A0A1V0SD03	Indivirus	6.2e-05	26.4
WP_044799149.1\|1598804_1601666_+\|tRNA	isoleucine--tRNA ligase	K7YVP8	Megavirus	6.6e-79	25.8
1603959:1603976	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1760202 : 1770138

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029305164.1\|1760202_1760949_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.2e-70	54.1
WP_011704775.1\|1760953_1761571_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-34	46.4
WP_016349540.1\|1761567_1762149_+	DedA family protein	NA	NA	NA	NA
WP_026080441.1\|1762159_1763200_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0A7NU10	Lactobacillus_phage	6.6e-13	35.6
WP_011704778.1\|1763247_1764231_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.7e-34	34.1
WP_024946180.1\|1764315_1765329_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.1e-108	58.3
WP_005309452.1\|1765508_1765724_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_016349543.1\|1765739_1766183_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.7e-26	48.6
WP_041217120.1\|1766271_1768059_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	5.2e-74	41.1
WP_073348937.1\|1768272_1770138_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6

DBSCAN-SWA_4

2018808 : 2041998

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099368947.1\|2018808_2019896_-\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA
WP_171281212.1\|2019961_2020339_+	hypothetical protein	NA	NA	NA	NA
WP_171280219.1\|2020321_2021593_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	8.1e-130	55.4
WP_010676201.1\|2021596_2022019_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	5.5e-35	55.1
WP_087756365.1\|2022150_2022360_+	antitoxin	NA	NA	NA	NA
WP_001274811.1\|2022905_2024447_+\|transposase	IS21-like element ISAs29 family transposase	K4I413	Acidithiobacillus_phage	4.4e-130	47.6
WP_000194037.1\|2024461_2025217_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.4e-59	51.5
WP_139127910.1\|2027173_2027647_+	hypothetical protein	NA	NA	NA	NA
WP_171281213.1\|2028034_2029087_-	Fic family protein	NA	NA	NA	NA
WP_171280220.1\|2029087_2030509_-\|transposase	IS66-like element ISKpn15 family transposase	NA	NA	NA	NA
WP_171280221.1\|2030587_2030818_-	DUF4172 domain-containing protein	NA	NA	NA	NA
WP_099368947.1\|2030989_2032076_+\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA
WP_171280222.1\|2032259_2033378_+	hypothetical protein	NA	NA	NA	NA
WP_163136448.1\|2033970_2035011_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011711659.1\|2035393_2036134_-	hypothetical protein	NA	NA	NA	NA
WP_069785041.1\|2036136_2037072_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_069785042.1\|2037194_2037683_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_005403706.1\|2037686_2037947_+	glutaredoxin	M4R2D4	Vibrio_phage	2.5e-06	42.9
WP_005403705.1\|2037978_2038419_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_011711656.1\|2038473_2038719_+	hypothetical protein	NA	NA	NA	NA
WP_001281573.1\|2038924_2039587_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
WP_002119794.1\|2039806_2040784_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.7e-18	35.0
WP_001809438.1\|2040966_2041998_+\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2305334 : 2381207

Bacillus_phage(33.33%)

holin,transposase,integrase

attL 2301453:2301467|attR 2321717:2321731

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2301453:2301467	attL	NA	NA	NA	NA
WP_053288230.1\|2305334_2306558_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	1.7e-100	49.7
WP_011705235.1\|2306937_2307267_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_171280264.1\|2307284_2307698_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_171280265.1\|2307717_2308410_-	hypothetical protein	NA	NA	NA	NA
WP_171280266.1\|2308421_2309042_-	phosphate propanoyltransferase	NA	NA	NA	NA
WP_029303630.1\|2309038_2309488_-	BMC domain-containing protein	NA	NA	NA	NA
WP_049048312.1\|2309500_2310448_-\|holin	choline TMA-lyase-activating enzyme	NA	NA	NA	NA
WP_171280267.1\|2310561_2313948_-\|holin	choline trimethylamine-lyase	A0A1S6UAD4	Serratia_phage	9.7e-05	45.0
WP_171280268.1\|2313973_2315128_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_010634663.1\|2315143_2315401_-	EutN/CcmL family microcompartment protein	NA	NA	NA	NA
WP_171280269.1\|2315427_2317014_-	acetaldehyde dehydrogenase (acetylating)	NA	NA	NA	NA
WP_002442217.1\|2317067_2317346_-	BMC domain-containing protein	NA	NA	NA	NA
WP_011705244.1\|2317360_2317645_-	BMC domain-containing protein	NA	NA	NA	NA
WP_010634659.1\|2317661_2317940_-	BMC domain-containing protein	NA	NA	NA	NA
WP_017408465.1\|2318665_2319181_-	hypothetical protein	NA	NA	NA	NA
WP_118881653.1\|2319180_2319990_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016350031.1\|2320011_2320584_-	TetR family transcriptional regulator	A0A0R6PIB6	Moraxella_phage	3.2e-09	31.0
WP_118881652.1\|2320999_2321914_-	LysR family transcriptional regulator	NA	NA	NA	NA
2321717:2321731	attR	NA	NA	NA	NA
WP_162902001.1\|2322062_2322860_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_118881650.1\|2322846_2325135_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_045529497.1\|2325404_2326145_-	phosphatase	NA	NA	NA	NA
WP_011705252.1\|2326613_2327267_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_168755062.1\|2327315_2329640_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_171280270.1\|2329810_2332873_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	4.3e-68	25.9
WP_017408448.1\|2332888_2333935_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_060388857.1\|2333999_2335439_-	pyruvate kinase	NA	NA	NA	NA
WP_005298732.1\|2335602_2336457_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_011705258.1\|2336806_2337775_+	glucokinase	NA	NA	NA	NA
WP_029301488.1\|2338077_2339460_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_043160091.1\|2339459_2340134_-	response regulator	W8CYM9	Bacillus_phage	2.3e-27	33.8
WP_171280271.1\|2340272_2342438_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	4.1e-49	29.6
WP_171280272.1\|2342434_2343799_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_171280273.1\|2343795_2345883_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	4.5e-37	27.5
WP_045791060.1\|2346260_2346590_+	hypothetical protein	NA	NA	NA	NA
WP_161772470.1\|2346610_2347072_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA
WP_171280274.1\|2347089_2361606_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	NA	NA	NA
WP_118881642.1\|2361945_2362440_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171281216.1\|2362540_2363866_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_171280275.1\|2364377_2365394_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.9e-185	99.1
WP_026141496.1\|2365626_2367552_-	diguanylate cyclase	G3MA91	Bacillus_virus	3.4e-23	39.2
WP_109422605.1\|2368855_2369041_-	hypothetical protein	NA	NA	NA	NA
WP_128297483.1\|2369651_2370044_+	hypothetical protein	NA	NA	NA	NA
WP_161646766.1\|2370068_2371778_+	hypothetical protein	NA	NA	NA	NA
WP_161646767.1\|2371899_2372622_+	hypothetical protein	NA	NA	NA	NA
WP_026141240.1\|2372992_2375206_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_017778773.1\|2375180_2376476_-	ATP-binding protein	NA	NA	NA	NA
WP_171280276.1\|2376468_2378901_-	TerB N-terminal domain-containing protein	NA	NA	NA	NA
WP_099368947.1\|2379170_2380257_+\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA
WP_026141239.1\|2380907_2381207_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2991496 : 3020852

Yersinia_phage(14.29%)

protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076362878.1\|2991496_2991928_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_118881410.1\|2991931_2993698_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_029301185.1\|2993661_2994660_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_171280458.1\|2994716_2995967_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_017411065.1\|2995966_2996482_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_017411064.1\|2996484_2997819_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_010634228.1\|2997841_2998621_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_171280459.1\|3001285_3002824_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_118881406.1\|3002823_3003429_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_118881405.1\|3003437_3004883_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_171280460.1\|3004924_3008422_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_118881403.1\|3008466_3009897_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_017411057.1\|3010154_3010442_+	type VI secretion system PAAR protein	G4KK81	Yersinia_phage	2.3e-08	39.4
WP_171280461.1\|3010452_3012498_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.1e-34	26.5
WP_118881401.1\|3012507_3015066_+	glucosaminidase domain-containing protein	A0EX80	Staphylococcus_virus	3.6e-36	40.7
WP_162901962.1\|3015069_3015861_+	hypothetical protein	NA	NA	NA	NA
WP_118881400.1\|3016804_3017668_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.3e-27	31.2
WP_005300025.1\|3017775_3017994_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-17	63.2
WP_005300028.1\|3018222_3018540_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.4e-14	49.4
WP_118881399.1\|3018599_3020852_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	9.2e-169	43.7

DBSCAN-SWA_7

4265291 : 4301448

Vibrio_phage(86.11%)

tail,head,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171281250.1\|4265291_4265984_-	helix-turn-helix transcriptional regulator	A0A2I7S9A5	Vibrio_phage	2.4e-51	67.9
WP_080602740.1\|4266251_4266512_+	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	3.2e-17	62.7
WP_171280852.1\|4266522_4268544_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2I7S9A8	Vibrio_phage	1.4e-229	59.9
WP_171280853.1\|4268603_4269536_+	AAA family ATPase	M4M9P4	Vibrio_phage	1.6e-103	62.6
WP_171280854.1\|4269535_4269751_+	hypothetical protein	NA	NA	NA	NA
WP_005301790.1\|4269747_4270071_+	hypothetical protein	NA	NA	NA	NA
WP_171280855.1\|4270086_4270707_+	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	7.6e-57	56.9
WP_171280856.1\|4270715_4271051_+	hypothetical protein	NA	NA	NA	NA
WP_171280857.1\|4271040_4271334_+	hypothetical protein	A0A2I7S9G2	Vibrio_phage	9.2e-21	60.0
WP_171280858.1\|4271326_4271557_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_171280859.1\|4271556_4272021_+	hypothetical protein	NA	NA	NA	NA
WP_171280860.1\|4272129_4272351_+	hypothetical protein	NA	NA	NA	NA
WP_171280861.1\|4272352_4272649_+	hypothetical protein	NA	NA	NA	NA
WP_017410079.1\|4272752_4273004_+	hypothetical protein	NA	NA	NA	NA
WP_171280862.1\|4272979_4273228_+	hypothetical protein	M4M9N5	Vibrio_phage	5.4e-14	70.0
WP_171280863.1\|4273224_4273470_+	hypothetical protein	NA	NA	NA	NA
WP_171280864.1\|4273459_4273978_+	hypothetical protein	NA	NA	NA	NA
WP_171280865.1\|4273967_4274600_+	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	6.6e-32	43.5
WP_005301765.1\|4274694_4275114_+	hypothetical protein	M4MHG9	Vibrio_phage	3.6e-26	41.7
WP_171280866.1\|4275113_4275518_+	hypothetical protein	NA	NA	NA	NA
WP_026080369.1\|4275633_4276215_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	7.4e-54	57.6
WP_171280867.1\|4276216_4276525_+	hypothetical protein	NA	NA	NA	NA
WP_171280868.1\|4276509_4277121_+	hypothetical protein	M1NVP4	Vibrio_phage	4.7e-35	49.0
WP_042007613.1\|4277117_4277360_+	TraR/DksA family transcriptional regulator	M4MHG5	Vibrio_phage	3.1e-14	59.2
WP_005301745.1\|4277349_4277673_+	DUF2730 family protein	NA	NA	NA	NA
WP_041202476.1\|4277693_4277981_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	3.4e-28	66.3
WP_171280869.1\|4277998_4278232_+	hypothetical protein	NA	NA	NA	NA
WP_171280870.1\|4278504_4279083_+	DUF3486 family protein	M4MCR3	Vibrio_phage	7.3e-46	57.8
WP_171280871.1\|4279082_4280672_+	hypothetical protein	M4MHG0	Vibrio_phage	8.9e-211	72.8
WP_171280872.1\|4280668_4282234_+	DUF935 domain-containing protein	M4M9P3	Vibrio_phage	5.5e-205	69.6
WP_171280873.1\|4282226_4283018_+	hypothetical protein	M1PVV7	Vibrio_phage	4.6e-107	69.2
WP_171280874.1\|4283387_4284344_+	peptidase	M1Q578	Vibrio_phage	2.2e-79	49.5
WP_171280875.1\|4284350_4285250_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2I7S9D0	Vibrio_phage	7.0e-112	65.8
WP_171280876.1\|4285340_4285595_+	hypothetical protein	NA	NA	NA	NA
WP_171280877.1\|4285598_4286111_+	hypothetical protein	A0A1P8L658	Pectobacterium_phage	2.0e-34	55.0
WP_171280878.1\|4286145_4286682_+	hypothetical protein	NA	NA	NA	NA
WP_171280879.1\|4286685_4287120_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	1.8e-49	64.6
WP_042007589.1\|4287119_4287677_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	6.3e-71	73.9
WP_171280880.1\|4287673_4288291_+	hypothetical protein	M4MHF0	Vibrio_phage	1.1e-47	50.7
WP_042007585.1\|4288299_4288509_+	DUF2635 domain-containing protein	A0A0C4UR31	Shigella_phage	2.9e-05	45.3
WP_171280881.1\|4288511_4290002_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	3.0e-160	58.4
WP_171280882.1\|4290012_4290369_+\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	1.2e-33	61.0
WP_171280883.1\|4290371_4290743_+\|tail	phage tail assembly protein	M4MB64	Vibrio_phage	1.4e-29	57.6
WP_171280884.1\|4290882_4292634_+	hypothetical protein	A0A2P9JZK0	Alteromonadaceae_phage	1.2e-80	39.0
WP_171280885.1\|4292645_4294052_+	DNA circularization N-terminal domain-containing protein	M4M9N2	Vibrio_phage	7.1e-111	47.7
WP_171280886.1\|4294044_4295124_+\|tail	phage tail protein	M1PVV2	Vibrio_phage	1.7e-83	46.8
WP_171280887.1\|4295117_4295672_+\|plate	phage baseplate assembly protein	M4MCP6	Vibrio_phage	3.7e-39	50.7
WP_171280888.1\|4295678_4296131_+	phage GP46 family protein	M4MB61	Vibrio_phage	1.2e-30	55.6
WP_171280889.1\|4296120_4297188_+\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	7.5e-129	65.1
WP_171280890.1\|4297172_4297754_+	DUF2313 domain-containing protein	A0A2I7S9L6	Vibrio_phage	1.5e-54	55.2
WP_171280891.1\|4297756_4299877_+	hypothetical protein	A0A0A0RVE3	Bacillus_phage	4.9e-31	26.8
WP_099368947.1\|4299915_4301003_-\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA
WP_171280892.1\|4301043_4301448_+	hypothetical protein	A0A0A0RUQ7	Bacillus_phage	7.5e-13	39.3

DBSCAN-SWA_8

4577736 : 4632313

Vibrio_phage(84.21%)

transposase,tRNA,tail,plate,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005298460.1\|4577736_4578333_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_016351608.1\|4578567_4579659_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_041218664.1\|4581073_4582906_-	SLC13 family permease	NA	NA	NA	NA
WP_011706944.1\|4583168_4583891_+	nicotinamide riboside transporter PnuC	A0A2I7SAC7	Vibrio_phage	8.1e-18	27.4
WP_171281007.1\|4583887_4584613_+	nucleoside phosphorylase	NA	NA	NA	NA
WP_162518647.1\|4584740_4585412_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_101150250.1\|4585455_4585773_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_016351614.1\|4585840_4586242_+	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_171281008.1\|4586442_4588083_+	alpha-glucosidase	NA	NA	NA	NA
WP_171281009.1\|4590768_4594314_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_171281010.1\|4594576_4595317_-	helix-turn-helix transcriptional regulator	A0A2I7S9A5	Vibrio_phage	1.5e-67	52.8
WP_103259275.1\|4595466_4595691_+	helix-turn-helix domain-containing protein	A0A0C4UQU0	Shigella_phage	1.7e-11	50.8
WP_171281011.1\|4595702_4597724_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2I7S9A8	Vibrio_phage	6.6e-227	59.7
WP_171281012.1\|4597783_4598716_+	AAA family ATPase	M4M9P4	Vibrio_phage	7.6e-101	61.3
WP_171281013.1\|4598719_4598992_+	hypothetical protein	A0A0U5KSG7	unidentified_phage	2.6e-09	44.6
WP_171280854.1\|4598991_4599207_+	hypothetical protein	NA	NA	NA	NA
WP_171281014.1\|4599203_4599527_+	hypothetical protein	NA	NA	NA	NA
WP_171281015.1\|4599542_4600163_+	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	1.5e-57	56.9
WP_042007636.1\|4600171_4600534_+	hypothetical protein	NA	NA	NA	NA
WP_171281016.1\|4600523_4600808_+	hypothetical protein	M1PJ71	Vibrio_phage	4.4e-20	56.0
WP_171281017.1\|4600800_4601031_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_171281018.1\|4601030_4601726_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-21	32.3
WP_171281019.1\|4601834_4602047_+	hypothetical protein	NA	NA	NA	NA
WP_171281020.1\|4602126_4602303_+	hypothetical protein	NA	NA	NA	NA
WP_171281021.1\|4602407_4602659_+	hypothetical protein	NA	NA	NA	NA
WP_171281022.1\|4602634_4602883_+	hypothetical protein	A0A2I7S9D2	Vibrio_phage	5.4e-14	70.0
WP_171281023.1\|4602879_4603137_+	hypothetical protein	NA	NA	NA	NA
WP_171281024.1\|4603126_4603654_+	hypothetical protein	NA	NA	NA	NA
WP_171281025.1\|4603643_4604276_+	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	6.6e-32	43.5
WP_171281026.1\|4604299_4604770_+	hypothetical protein	NA	NA	NA	NA
WP_171281027.1\|4604861_4605335_+	hypothetical protein	NA	NA	NA	NA
WP_026080369.1\|4605455_4606037_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	7.4e-54	57.6
WP_042007617.1\|4606038_4606347_+	hypothetical protein	NA	NA	NA	NA
WP_171281028.1\|4606331_4606943_+	hypothetical protein	M1NVP4	Vibrio_phage	6.8e-34	48.7
WP_042007613.1\|4606939_4607182_+	TraR/DksA family transcriptional regulator	M4MHG5	Vibrio_phage	3.1e-14	59.2
WP_005301745.1\|4607171_4607495_+	DUF2730 family protein	NA	NA	NA	NA
WP_171281029.1\|4607506_4607803_+	ArsR family transcriptional regulator	A0A2I7S9D8	Vibrio_phage	1.0e-27	65.2
WP_171281030.1\|4607820_4608054_+	hypothetical protein	NA	NA	NA	NA
WP_171281031.1\|4608184_4608769_+	DUF3486 family protein	M4MCR3	Vibrio_phage	1.2e-56	66.0
WP_171281032.1\|4608768_4610370_+	hypothetical protein	M4MHG0	Vibrio_phage	6.9e-203	71.1
WP_171281033.1\|4610366_4611932_+	DUF935 domain-containing protein	M4M9P3	Vibrio_phage	2.2e-206	69.6
WP_171281034.1\|4611924_4612716_+	hypothetical protein	M1PVV7	Vibrio_phage	1.4e-108	69.6
WP_171281035.1\|4613084_4614044_+	peptidase	M1Q578	Vibrio_phage	9.5e-83	50.2
WP_171281036.1\|4614050_4614950_+\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	7.0e-112	64.7
WP_171281037.1\|4615041_4615296_+	hypothetical protein	NA	NA	NA	NA
WP_171281038.1\|4615299_4615812_+	hypothetical protein	A0A1P8L658	Pectobacterium_phage	1.4e-35	56.4
WP_171281039.1\|4615846_4616335_+	hypothetical protein	NA	NA	NA	NA
WP_171281040.1\|4616338_4616773_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	1.5e-48	63.2
WP_171281041.1\|4616772_4617330_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	6.3e-71	73.3
WP_171281042.1\|4617326_4617944_+	hypothetical protein	M4MHF0	Vibrio_phage	3.1e-50	52.7
WP_171281043.1\|4617952_4618132_+	DUF2635 domain-containing protein	A0A2I7S9K4	Vibrio_phage	2.3e-06	50.0
WP_171281044.1\|4618134_4619625_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	7.0e-165	59.6
WP_171281045.1\|4619635_4619992_+\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	1.2e-25	48.3
WP_171281046.1\|4619994_4620357_+\|tail	phage tail assembly protein	M1NVT1	Vibrio_phage	5.6e-28	56.3
WP_171281047.1\|4620510_4622175_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	8.9e-137	51.3
WP_171281048.1\|4622186_4623593_+	DNA circularization N-terminal domain-containing protein	M4M9N2	Vibrio_phage	3.2e-111	48.2
WP_171281049.1\|4623585_4624665_+\|tail	phage tail protein	M1PVV2	Vibrio_phage	3.3e-84	47.4
WP_171281050.1\|4624658_4625201_+\|plate	phage baseplate assembly protein V	M4MCP6	Vibrio_phage	9.6e-40	57.5
WP_171281051.1\|4625207_4625660_+	phage GP46 family protein	M4MB61	Vibrio_phage	7.0e-36	60.9
WP_171281052.1\|4625649_4626717_+\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	2.2e-128	63.1
WP_171281053.1\|4626701_4627283_+	DUF2313 domain-containing protein	M1NVS6	Vibrio_phage	9.3e-57	57.6
WP_171281054.1\|4627655_4630022_+	hypothetical protein	A0A193GYB8	Enterobacter_phage	2.0e-17	36.2
WP_171281055.1\|4631716_4632313_+	beta-phosphoglucomutase family hydrolase	A0A1D8KPI1	Synechococcus_phage	3.8e-13	30.2

DBSCAN-SWA_9

4799337 : 4806846

Staphylococcus_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016351731.1\|4799337_4799808_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-30	48.7
WP_171281125.1\|4800005_4801217_+\|protease	serine protease	V5LS29	Emiliania_huxleyi_virus	8.8e-09	26.9
WP_016351734.1\|4801280_4802390_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.9e-65	39.0
WP_024944275.1\|4802531_4803185_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.1e-20	36.4
WP_171281126.1\|4803239_4804349_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	7.2e-50	35.5
WP_010675395.1\|4804445_4804895_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_171281127.1\|4805029_4805509_-	hypothetical protein	NA	NA	NA	NA
WP_011707102.1\|4805592_4806846_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.3e-100	53.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP038513

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection