CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP038515	Aeromonas sp. 1805 chromosome, complete genome	12 crisprs	csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP038515_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_1

203888-203998

Orphan

Consensus_repeat	Method
GCGGGCTTTTTTGTGCCTCATTCTGAATTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_1

>merge|NZ_CP038515|1|203888-203998|CRISPRCasFinder
GCGGGCTTTTTTGTGCCTCATTCTGAATTGCGGCAGTCCCCCCCTCCCCATTGAGGGCAATACGCGCCCTGCAAGTTCGGCGGGCTTTTTTGTGCCTCACTCTGAATTGCG

>NZ_CP038515|1|1|203888-203998|CRISPRCasFinder
GCGGGCTTTTTTGTGCCTCATTCTGAATTGCG	GCAGTCCCCCCCTCCCCATTGAGGGCAATACGCGCCCTGCAAGTTCG
GCGGGCTTTTTTGTGCCTCACTCTGAATTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_171281354.1\|199122_199725_-\|DUF3306-domain-containing-protein	unknown	unknown	gnl\|CDD\|371701
NZ_CP038515.1\|WP_171281353.1\|197287_199018_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|183492
NZ_CP038515.1\|WP_081013111.1\|201274_201766_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171281358.1\|204070_206164_-\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP038515.1\|WP_024944146.1\|214456_215758_-\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP038515.1\|WP_171281362.1\|210828_212574_+\|bifunctional-molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB/molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|237729
NZ_CP038515.1\|WP_171281359.1\|206195_207551_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP038515.1\|WP_171281356.1\|200630_201125_-\|transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376415
NZ_CP038515.1\|WP_017409127.1\|212637_213696_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP038515.1\|WP_171283191.1\|193471_196309_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP038515.1\|WP_024944156.1\|202979_203846_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378934
NZ_CP038515.1\|WP_005303194.1\|196383_196587_-\|transcriptional-initiation-protein-Tat	unknown	unknown	gnl\|CDD\|274310
NZ_CP038515.1\|WP_171281357.1\|202032_202890_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|376873
NZ_CP038515.1\|WP_016351543.1\|208709_209411_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|227008
NZ_CP038515.1\|WP_005303221.1\|209526_210222_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224047
NZ_CP038515.1\|WP_043121349.1\|213744_214365_-\|DUF3332-domain-containing-protein	unknown	unknown	gnl\|CDD\|371739
NZ_CP038515.1\|WP_171281361.1\|210193_210832_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP038515.1\|WP_171281352.1\|196656_197277_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP038515.1\|WP_171281360.1\|207799_208642_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225544
NZ_CP038515.1\|WP_171281355.1\|199717_200281_-\|DUF3305-domain-containing-protein	unknown	unknown	gnl\|CDD\|371702

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_171281354.1\|199122_199725_-\|DUF3306-domain-containing-protein	gnl\|CDD\|371701	pfam11748, DUF3306, Protein of unknown function (DUF3306). This family of proteobacterial species proteins has no known function.	2.815e-12
NZ_CP038515.1\|WP_171281353.1\|197287_199018_-\|4Fe-4S-binding-protein	gnl\|CDD\|183492	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional.	9.90404e-10
NZ_CP038515.1\|WP_171281358.1\|204070_206164_-\|cache-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.28209e-56
NZ_CP038515.1\|WP_024944146.1\|214456_215758_-\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	5.81409e-37
NZ_CP038515.1\|WP_171281362.1\|210828_212574_+\|bifunctional-molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB/molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|237729	PRK14491, PRK14491, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional.	0
NZ_CP038515.1\|WP_171281359.1\|206195_207551_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	8.91799e-172
NZ_CP038515.1\|WP_171281356.1\|200630_201125_-\|transglycosylase-domain-containing-protein	gnl\|CDD\|376415	pfam00912, Transgly, Transglycosylase. The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.	1.2854e-20
NZ_CP038515.1\|WP_017409127.1\|212637_213696_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	6.73074e-26
NZ_CP038515.1\|WP_171283191.1\|193471_196309_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	5.63471e-175
NZ_CP038515.1\|WP_024944156.1\|202979_203846_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378934	pfam12727, PBP_like, PBP superfamily domain. This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain.	1.06102e-45
NZ_CP038515.1\|WP_005303194.1\|196383_196587_-\|transcriptional-initiation-protein-Tat	gnl\|CDD\|274310	TIGR02811, formate_dehydrogenase_accessory_protein_FdhX, formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein. [Unknown function, General].	3.36908e-25
NZ_CP038515.1\|WP_171281357.1\|202032_202890_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|376873	pfam02634, FdhD-NarQ, FdhD/NarQ family. A pan-bacterial lineage of proteins. Nitrate assimilation protein, NarQ, and FdhD are required for formate dehydrogenase activity. Structurally, they possess a deaminase fold with a characteristic binding pocket, suggesting that they might bind a nucleotide or related molecule allosterically to regulate the formate dehydrogenase catalytic subunit.	1.28702e-98
NZ_CP038515.1\|WP_016351543.1\|208709_209411_+\|ABC-transporter-permease	gnl\|CDD\|227008	COG4662, TupA, ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism].	7.81244e-77
NZ_CP038515.1\|WP_005303221.1\|209526_210222_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224047	COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism].	3.76241e-45
NZ_CP038515.1\|WP_043121349.1\|213744_214365_-\|DUF3332-domain-containing-protein	gnl\|CDD\|371739	pfam11810, DUF3332, Domain of unknown function (DUF3332). This family of proteins are functionally uncharacterized. This family is only found in bacteria.	5.15128e-47
NZ_CP038515.1\|WP_171281361.1\|210193_210832_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	1.16334e-87
NZ_CP038515.1\|WP_171281352.1\|196656_197277_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	1.04926e-29
NZ_CP038515.1\|WP_171281360.1\|207799_208642_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|225544	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism].	1.20221e-115
NZ_CP038515.1\|WP_171281355.1\|199717_200281_-\|DUF3305-domain-containing-protein	gnl\|CDD\|371702	pfam11749, DUF3305, Protein of unknown function (DUF3305). Several members of this family are annotated as being molybdopterin-guanine dinucleotide biosynthesis protein A; however, this could not be confirmed. The family is found in proteobacteria.	1.29657e-26

>NZ_CP038515.1|WP_024944156.1|202979_203846_+|helix-turn-helix-domain-containing-protein
MNVKQVAEYLDLNEKKVYQLANEARIPATKATGKWLFPRSLLDRWLLGSCHEGVMNDRLLLAGSDDVLLHYASSRLAQQLGTQALVGYTPCGTRQGLAMLARGHVDLCAIHWGQAEEAHLRHPALVQQYQGHRQWVIVHGFRRVQGLVLRRGLQPKEARQALDWRWAMRQEGAGSQRALQEWLQTQGESLTRLERTIEVNSERELAAAISRGDADVGPGAQSTATEFGLDFMPLSQECFDLVMPQGVFFRTLLQQLIGWLQSPEGRELAARLGGYDLTQSGKLVWSPQ
>NZ_CP038515.1|WP_171281357.1|202032_202890_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MTPTFIKSNAAAQLTMAVEVMDEQGTLQTRQIACERPLTVYLNWKEIVTLMTLGARPEALVLGYLKNQGFIENIGAIESVIVDWESEAAAVVSSQQAADLDKSLEKKTVTSGCGQGTMYGSVMKKLEGVVLAAPELKQSTLYALLKALSAHNETYKMAGAVHGCAICRGAEILSFVEDVGRHNAVDTLAGELWMSGEAGHDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLDLARQLGITMIARAKGRHFEVFSGHDHLVLDEKPPVLAPGSASRGMRD
>NZ_CP038515.1|WP_081013111.1|201274_201766_-|hypothetical-protein
MDNLWGDVLATVIGGCILTFLFFLIREKCFPLPNISGMWHLKNITVDSAYNPYKGMTLGYTAILWCEGNRVSGTTEKVYEDSVNGERPFIGKNRCRGVVDGYIHKNYFSKDMVVLHVVEDGFGRESTYSYKLKIQNKTDTLEGIFSTMVADQNGYTTWSREKI
>NZ_CP038515.1|WP_171281356.1|200630_201125_-|transglycosylase-domain-containing-protein
MQIAEDHRGDYHYGIDQISFCRIIYQYIFRGIKQGGSTIEQQLVRTITGHYEPTLKRKLMEQLLAISIARKFNKDQIVSAYVQVAYLGTKISGVFELAKCLGLDVFRDSTILSIELSIRLKYPEPSKYSLIWHAKYQRRKNHIINLASKKLPKHIRENVNARQI
>NZ_CP038515.1|WP_171281355.1|199717_200281_-|DUF3305-domain-containing-protein
MQDTTNTLSPQRWLQLELKAIDSQVGRWQSRRFEIAALHPAEPEAAGALPLTLFRDERGDYRFNLSSGSPRLFVTGSRVDNGFVADGLTLSQTVAAAYMDGERQVLSCPLPEALQAWVEAFIGRHGELLEARRKGKKGKGRAQDQLGVDSQDQANCGAVKATGPDGRERGSDAGASAVNKAGNSAHE
>NZ_CP038515.1|WP_171281354.1|199122_199725_-|DUF3306-domain-containing-protein
MSEFLKRWSSRKSEARKHQALQPREEAPPEAVSAPIKGSDEGGIPDTALDGCVVSTDKGRDVPLHLEGDKPRGSEPQMASSEKPALADKETLRAMFRSHKPDGLDDYTQDFSQPELLPAALSAGLRNWLVEQVSTPDGEVPHSTAAAPEPATVAATAITSEPQGLADNHSQTPTDDRDILVGHDGQNVPIKGGGMEHLGS
>NZ_CP038515.1|WP_171281353.1|197287_199018_-|4Fe-4S-binding-protein
MSIEQPITTSVATLTADGVAARNERARAHALQHTVKTDNLIPATVSYQSQGRLLLVGPEDRIRRAASLLPQGVMPTLLVTESVYDAEAADLEAIFEATAAMDALTLREPSLTGYLGQFQLTGLNGQGERISLAALCFPQQATVGSEPRFDLVADLGRAPLFALERPPVGYLHLADDDGLAARLAEICALTGIFDKPRYFRLDPEACAFTARGVPGCSRCLDVCPTDALKPINGRIQIDPHLCQGFGSCASACPTGAIGYHQPDANTSGDYLFRLIKHYREAGGDAPQLLIAGESEREWVETELTRLPANWLPVWVEESASLGIESWFAALAYGASAVRIALGDDAPESVCVLVERELASAAVLLTGAGLAADRIGLFNPDVELGKPISGQPAAALLDKPLKGDKRENLFAAFDALWQANNGGREPLAVPHGAPYGSVELKDADCTLCMGCVAVCPSRALHAVGHTPGLNFIEQDCIQCGMCEKACPEQAIVLMPRLQPVPEARRAVQSLKAEEAACCIRCSKPFAPASLIRRIQQKLAGHSHFQNEAAQRLLMCEDCRVKDVFAALAADPVSQLKV
>NZ_CP038515.1|WP_171281352.1|196656_197277_-|molecular-chaperone-TorD-family-protein
MTEQRNDYPEAPAMTDLDRNSADMYALLASLWRAAPRGEQLAWLQGLQAMPGPFARGLGLVQLAASSHHENELAEEYQDLFIGLGRGEIVPFASWYLTGSLMELPLAVLRADLQSLGFERQSGVCEPEDHLAALCEVMAVLIAEQHPDRNRFYERHLAPWVLACCRDQQQAKGGSFYRAVGALAEDFFKLEQELRLPFGSPLVTQP
>NZ_CP038515.1|WP_005303194.1|196383_196587_-|transcriptional-initiation-protein-Tat
MSDEQLKDPSRRNLIKGVGVVATIGVLAGATGRVVGKEVLTHDTEPDKGYRETPHVHDFYRTLRGTD
>NZ_CP038515.1|WP_171283191.1|193471_196309_-|formate-dehydrogenase-subunit-alpha
MQSNGAARGQGLTRRAFMVNSSLVAGGAVAAGWLAPAMMQRAEAKTVAADVPVEVKRTICSHCSVGCGVYAEVQNGVWTGQEPAFDHPFNLGGHCAKGAALREHGHGERRLKYPMKLVGGKWQRLSWEQAIEEVGNEVQRLRKESGPDSVYWLGSAKHSNEQAYLFRKMASLWGTNNVDHQARICHSTTVAGVANTWGYGAMTNSLNDMHNSKSIMFIGSNPAEAHPVAMQHILLAKERNGCKILVVDPRRTRTAAKADMYLSLRPGTDVAFIWGMLWHIFKNGWEDKEFIRTRVYGMDEVQKEVARWTPAEVERVTGLNEQQVHGAAKLLADNRPGCVVWCMGGTQHTTGNNNTRAYCILELALGNVGKSGAGTNIFRGHDNVQGATDFGVTSDSLPGYYGLEEGSWKHWARVWDVDYEWIKARFDNKAYNGKLPMNNNGIPVSRWVDGVLENADLIEQGSNIRAMFYWGHAVNSQTRGPEMKKAMQKLDMMVIVDPYPTVAAVMNDRTDGVYLLPATTQFETYGSVTATNRSMQWRDKVIEPLFESKVDHEIMYLLSKKLGFADELFKHIKVENNEPLLEDITREYNRGMWSVGYTGQSPERLKAHQQNWHTFHKTNLKAEGGPVSGEVYGLPWPCWGTPEMKHPGSHILYDTSIPVSEGGGGFRARFGIEYQGVSLLAEDSWPKGSEVEDGYPEITADLMKQLGWWDELTEAEKKEAEGKNWKTDLSGGIQRVAIKHGFVPYGNAKARCVVWTFPDQVPKHREPLYTPRRDLLADYATWPDAKSLWRLPTQYASVQEKDVSKEFPIILTSGRLVEYEGGGDETRSNPWLAELQQEMFVEMNPADANDVGVRDGQDVWVEGPEGGRVKVKALVTPRVKPGLAFMPFHFGGHFEGQDLRAKYPEGSDPYVLGESVNIVTTYGYDPVTQMQETKVTLCRFRQVGA
>NZ_CP038515.1|WP_171281358.1|204070_206164_-|cache-domain-containing-protein
MRLAQIPGLLRTKVRWRLLLLTSVPIMLTLAGMIGLTLYWTLTYSWQNLLTTVRSDLGVAHHAVSVQQLRQAEHLEHLRDAWAFQLQLRESPARLRQWVMPLAANYGLDFLRLRSGSELDLLPAQDRAALGAGRSVSHFVVWSREQLLALSPALASRAVLEREYDPVAGQETRGLVSLSLTPVMGRDGSLWGVLEGGELINGSTRLVDELKGQVFAKNTLPAGSIGTVTLFLGDLRVSTNVPASSSRQLGRAVGTRVSAPVREQVLGRGEPWIDRAFVHDAWYVSGYEPLLGANGERIGMLYVGFLEWPIIRTYLTNLLELGSGVVVLLLLSGLLVYRGARDLFTPIERMHKVVRQVQAGQPARIGVLALDPDHELAQLGRQFDAMLDQQAAHQQQLARSADELEQKVAERTRSLEQKTAELEHHIHMLTQARQQLLISEKLAALGELCAGVAHEINNPLAVILGNVELMKLELGEAAAPVSEELALVLAQIERIRAITRSLLQYSRPGDYETAPVWQHLTPIIEESLTLVRSALRQQQVNLVADLRAQQPIEADRQQLLQVLINLLVNASHALGEQGEIRVESRDWLDDAGALQGAEVRVIDNGSGIEAAIIDKIFDPFFTTRATGTGLGLALSHRIISRWGGELLVDSTPGQGSCFTIRLRSHARLVSGGERARLEGWRIALNAEGRDAGGDHPS
>NZ_CP038515.1|WP_171281359.1|206195_207551_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MTAPASRWSALSLLIVDDEPGMRSFLAKALVRRFAQIETAASVEEAEALRCRLHFDLIIADIRLPGRSGIEWHEAIDPATRRSDIIFMTGFGDMETALKALRLGASDFILKPFNLDQMVQAVDRVIERRQMERENLLLRREVSKLFPPTLIGDSAKTRELKTLIARVAPSNAAVLVEGESGTGKELVARALHQLSGRMGAFVPLNCASIAPELLESELFGHVQGAFTGARKGRDGLFRVAHQGTLFLDEIGEMPLAMQASLLRALEQKAIRPVGAERELSVDVRIVAATNRNLKAEVEAGRFREDLFYRLNVVALPVAPLRERIDDIPALVHHFTRQLTAEMGMGALHWTHEDVVAMQAYPWPGNVRELRNLIERCLLLGKPPAEYWQSAKPAESARGEEGYPLEWALAEVEKAHILQVVASHDGNKSAASRVLGVARKTLERKFKEWAIE
>NZ_CP038515.1|WP_171281360.1|207799_208642_+|substrate-binding-domain-containing-protein
MITATVRKRLALALSSALLLSLPLWSAASHAETKAPIRLATTTSTEQSGLLGWLLPQFTKETGYPVQVMAAGTGQSLKMGENGDADLVMTHAPSAEKAFVEAGFGIEPEHLMYNDFVIVGPAKDPAGLGKLHDAAKALEAIKDKGQTFISRGDESGTHIKEKTLWQAADVKPEFAGYKSIGQGMGPTLTMASELGAYTLTDRGTWLAYQSKLDLAVLLEGDKRLFNPYQVILVNPKRYPDLNTEGARTLKNWLVSQHGQQLIGDFKVAGQPLFVADAKPQ
>NZ_CP038515.1|WP_016351543.1|208709_209411_+|ABC-transporter-permease
MPTLIETTLAALALLFSGDAELWQVVGVSFSVSGLALGLVLLPALLLGFALAYLPIPARWLWLSCINTLQSVPTVVIGLLLYMLLSRAGPFGDWKMLFTQQAMVVGQMLIAFPVIATMAHAAFVQSDRRAWETARTLGLSWPRALLGLMRECRFGLLAAVIGAFSRIVTEVGCSMMVGGNILHFTRNIPTAIALETQKGAFTQGVALGIVLLALALLLNLLLTACRGHSYLKN
>NZ_CP038515.1|WP_005303221.1|209526_210222_+|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MALTAHQLMMRFGERDLFQIEQLSIAAGDAIWLRGANGVGKTTLLKILAGLLTPTRGHTNLPSGWRGKLGQWLKRDPGPGRVTYLHQTPYLFDRSVHDNVAWALGHRAADEVRVFEALRRVELESLAREHISILSGGERQRLAMARAWALQPAFLLMDEPTANLDAHSVALMAAMAQDLREQGSGLVIISHQSNDLTDLCERQWTLARGRLHEPTPLKIIERHDLKQRTSY
>NZ_CP038515.1|WP_171281361.1|210193_210832_+|molybdenum-cofactor-guanylyltransferase-MobA
MTSNSEPRTDRFPVSAVVLAGGRATRMGGADKGWVELAGRPLIDHVLERLRPQVDEILINANRSQARYQALAPVIGDDNPDYLGPLAGMQAGLAAARHDWVLFVPCDGPALPRDLMARFRAALTPATELVVAHDGDWLQPVVALLHKSLLPSLSAALTEGERKIDIWFARHQMAVVSFADQPDAFINLNSPDELAAYEARLPDAATGQGATS
>NZ_CP038515.1|WP_171281362.1|210828_212574_+|bifunctional-molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB/molybdopterin-molybdotransferase-MoeA
MTPAPTLPLLGFAAWSGTGKTTLLEQLIPLLVSRGLRLGVLKHAHHDFDIDQPGKDSHRLRQAGASQMMVASRRRHARIIETDLGEADFRELLASFDQRSLDLLLVEGFKHEHFPKIELHRAAIGKPLLFPLDRDIIAVASDQPTETALPRLDINDLEAIADFVCHWLKESQTREQEAGNGFLSVEGARQAILDALTPSTRSIDLPLARCHGAVLAGDLVSPINVPPHANSAMDGIGLRSDDLAAGRWQLVGEVLAGQPRSEPVLAGQAVQIMTGAPLPPGVDTVVMREETHIEGEWVSVSAPVKAGQNVRQAGEDLALGAVAIPAGTRLGAPQLGLAASLGQATLTVRAPLKVALFSTGDEVQAPGETLAPGHIFDSNRFTLMALITGAGCEVMDLGIIPDDPAILRQQLAQAAADADLVLSSGGVSVGNADFIKQVLAELGQIAFWRIQMRPGRPLAFGKLGQTPFFGLPGNPVAAMICFLQFVEPAIARLQGRVWQPLRLSALAEQQMKSRPGRTEFLRGIFHQDASGVLRVRTTGPQGSGILSSMSDANCLIEIVPAQPAIAVGERVWIHPLQGRVA
>NZ_CP038515.1|WP_017409127.1|212637_213696_+|FUSC-family-protein
MRLNAPLSRLDLLIYGHYRIVHGLRIALAFMLTFLLTRELKLPESTWPLITLVVVMGPISFWGNVLSRALQRVVGTIFGASCGVVALYLELYSLPLMLLWCGCIMFLCGYLALGKRPYVGLLIGITLGVTMGAMPGDIETALWRSADVILGSLLALLFCSIYPQRAYSHWRLQMHDTLQQAQRLYHTHLSPNVLERPRLAHSHARLLSKMVSLRPLLTPAVKETRLGSALFEAIQTTMRNTLCTLEMLANTYWRDRQSHFLMQSTPELRACQQATEALMSELALMLKSGELQGSELAISRLQEAAGRVRIDAGGEAAISGYLWLNLQLTEQLTHLRRLLGLVMHPPRSQSHP
>NZ_CP038515.1|WP_043121349.1|213744_214365_-|DUF3332-domain-containing-protein
MPAGGGLFRLAASLFLEQAKTMATRRHGRALALLAGMVASVGLSGCMGQMGLSSMVTKGNLSVVDNRYGRAGVFVLLSPVYGLAATADLFVFNTIEFWSGKNPITGKSPALVDQKLDALIKVNQHLDPSLNKVPLAMLPQGVREVEVSYPDERTAQMEVHYLDGRSSLMRGEKRGELLDIYFDGRLVSTLTPAQLDELASRHPAMA
>NZ_CP038515.1|WP_024944146.1|214456_215758_-|PAS-domain-containing-methyl-accepting-chemotaxis-protein
MFNLKLKAELQACQEQLAQAQTFIDAVKGGVAVITFTPEGQILEANPLFLGVVGYSESEVVGQPHRIFCDGLYAQSNAYQQFWEQLRQGRSHSGVFRRLNKQGRTLWLDATYFPVRQEGRVVRVIKVASDITHSHEQLLSQEATSSALDRSQAIIEFTPRGEIVGANQNFLSCMGYSLSQIKGQHHKIFCDESFYREQPHFWEDLARGQVKSGLFLRRTSHGNDIWLEASYNPIKDEEGKVIKVIKFASDVTERILRAQAVSDAARVAHSISQDTTRAAATGTALLNSSVTLSTAISEQVGRMAELIGLLNEQSKSIQSIVSTISSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAARTTLSTSEIDGVVQKNRELTAQITNNINEVALSAQRGKEQIVEASSVMTQIEQGASNVTETVSGLAIGA

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Crispr_ID: NZ_CP038515_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_2

428069-428166

Orphan

Consensus_repeat	Method
CGCTTCGGCGGGCTGAGCATTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_2

>merge|NZ_CP038515|2|428069-428166|CRISPRCasFinder
CGCTTCGGCGGGCTGAGCATTGCAGGCAAGTAGCCATCTATGGATGACCAGGAGCATCATGCTTCTCCATTCGTCCGCTTCGGCGGGCTGAGCATCGC

>NZ_CP038515|2|2|428069-428166|CRISPRCasFinder
CGCTTCGGCGGGCTGAGCATTGC	AGGCAAGTAGCCATCTATGGATGACCAGGAGCATCATGCTTCTCCATTCGTC
CGCTTCGGCGGGCTGAGCATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_011707054.1\|432193_433168_-\|L-tyrosine/L-tryptophan-isonitrile-synthase-family-protein	unknown	unknown	gnl\|CDD\|368301
NZ_CP038515.1\|WP_024944248.1\|428351_428744_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP038515.1\|WP_011707051.1\|428819_429746_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NZ_CP038515.1\|WP_171283194.1\|416127_416439_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171281453.1\|440321_441110_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|184955
NZ_CP038515.1\|WP_043159833.1\|418631_420362_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP038515.1\|WP_171281448.1\|421908_423447_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP038515.1\|WP_171281450.1\|434700_436062_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP038515.1\|WP_049048193.1\|433723_434560_-\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847
NZ_CP038515.1\|WP_171281446.1\|416756_417260_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP038515.1\|WP_171281451.1\|436118_439226_-\|tetrathionate-reductase-subunit-TtrA	unknown	unknown	gnl\|CDD\|237883
NZ_CP038515.1\|WP_024944250.1\|431307_432183_-\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|225086
NZ_CP038515.1\|WP_011707047.1\|424530_425049_+\|flavodoxin-FldB	unknown	unknown	gnl\|CDD\|183471
NZ_CP038515.1\|WP_017409264.1\|421304_421712_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|234795
NZ_CP038515.1\|WP_011707048.1\|425360_426761_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP038515.1\|WP_171281447.1\|417299_418481_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133416
NZ_CP038515.1\|WP_039215876.1\|423443_424343_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP038515.1\|WP_171281449.1\|430024_431308_-\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340817
NZ_CP038515.1\|WP_017409263.1\|420327_421044_-\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|182802
NZ_CP038515.1\|WP_171281452.1\|439225_440332_-\|polysulfide-reductase-NrfD	unknown	unknown	gnl\|CDD\|184954

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_011707054.1\|432193_433168_-\|L-tyrosine/L-tryptophan-isonitrile-synthase-family-protein	gnl\|CDD\|368301	pfam05141, DIT1_PvcA, Pyoverdine/dityrosine biosynthesis protein. DIT1 is involved in synthesising dityrosine. Dityrosine is a sporulation-specific component of the yeast ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Pyoverdine biosynthesis protein PvcA is involved in the biosynthesis of pyoverdine, a cyclized isocyano derivative of tyrosine. It has a modified Rossmann fold.	2.13332e-113
NZ_CP038515.1\|WP_024944248.1\|428351_428744_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	7.36783e-26
NZ_CP038515.1\|WP_011707051.1\|428819_429746_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	2.3179e-146
NZ_CP038515.1\|WP_171281453.1\|440321_441110_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|184955	PRK14993, PRK14993, tetrathionate reductase subunit TtrB.	4.87639e-124
NZ_CP038515.1\|WP_043159833.1\|418631_420362_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP038515.1\|WP_171281448.1\|421908_423447_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.40394e-45
NZ_CP038515.1\|WP_171281450.1\|434700_436062_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	1.03033e-07
NZ_CP038515.1\|WP_049048193.1\|433723_434560_-\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	7.83194e-101
NZ_CP038515.1\|WP_171281446.1\|416756_417260_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.09053e-48
NZ_CP038515.1\|WP_171281451.1\|436118_439226_-\|tetrathionate-reductase-subunit-TtrA	gnl\|CDD\|237883	PRK14991, PRK14991, tetrathionate reductase subunit TtrA.	0
NZ_CP038515.1\|WP_024944250.1\|431307_432183_-\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|225086	COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	2.555e-48
NZ_CP038515.1\|WP_011707047.1\|424530_425049_+\|flavodoxin-FldB	gnl\|CDD\|183471	PRK12359, PRK12359, flavodoxin FldB; Provisional.	5.08137e-120
NZ_CP038515.1\|WP_017409264.1\|421304_421712_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|234795	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL.	5.64671e-75
NZ_CP038515.1\|WP_011707048.1\|425360_426761_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	4.1201e-119
NZ_CP038515.1\|WP_171281447.1\|417299_418481_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133416	cd04789, HTH_Cfa, Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.96208e-49
NZ_CP038515.1\|WP_039215876.1\|423443_424343_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.8981e-179
NZ_CP038515.1\|WP_171281449.1\|430024_431308_-\|glycosyltransferase-family-1-protein	gnl\|CDD\|340817	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins. This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.	6.51978e-43
NZ_CP038515.1\|WP_017409263.1\|420327_421044_-\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	1.43533e-25
NZ_CP038515.1\|WP_171281452.1\|439225_440332_-\|polysulfide-reductase-NrfD	gnl\|CDD\|184954	PRK14992, PRK14992, tetrathionate reductase subunit TtrC.	1.62728e-51

>NZ_CP038515.1|WP_011707048.1|425360_426761_+|TldD/PmbA-family-protein
MTPFSLLAPAIARDVLDHALALGADFAELFVERKRRSQLSLLSSQIENISGGLDFGIGVRLCYGHKVLYGYTNLASRDELLRIVSLLAAKDRRDPVVTATAFDFSRLSDRNPVALPLSADKLLEQKIAYLHAMDAAARAESTKVSQFAGNVLGWEQEVEIFNSEGVQVSDRRHYNRIMAQTIAALGSEQSVGYEAPGAMMGWEHAAGVDPRELALTATRQALVKLGAAPCPSGKLPVIMESGFGGVIFHEACGHLLETTSVAKKASVFHDKMGQLIANPAVSAVDEGLQGNAWGSINVDDEGMATQHTQLIKDGVLTGFLVDRMGALRTGYARTGSGRRESYKFAPASRMRNTYIEPGNHSLDEMLATVEHGIYAKRMGGGSVQPGTGEFNFNVQEAYLIEGGKITRPLKSATLIGTGPQVLKEISMVGRDLALSAGMCGSVSGSIPASVGQPPLKVDNILVGGNA
>NZ_CP038515.1|WP_011707047.1|424530_425049_+|flavodoxin-FldB
MKIGLFYGSTTCYTEMAAEKIRALIGPELVDLHNIKDVPLTLMQEYDILILGISTWDFGELQEDWESRWEDIQDVELEGRIIALFGMGDQLGYGEWYQDALGLLHDQLVPKGVKLVGYWPNEGYEFDASKALIDDGRHFVGLALDDANQYDQTESRIEQWVDQILSEIHELL
>NZ_CP038515.1|WP_039215876.1|423443_424343_-|site-specific-tyrosine-recombinase-XerD
MSKSESHPLIEPFLDALWLERGLSDNTVSSYRTDLEKFSLWLDEQGGSLLLAGLDDIQHYLAWRVDQQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQAPLVDEPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIQGELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGQHHPRA
>NZ_CP038515.1|WP_171281448.1|421908_423447_+|diguanylate-cyclase
MPPLTVTARPHHSFILRYLLLLALPLLLLTAGSGYLFVTKQQETMRNRFEFFSNSSAQQWDGALASVDAQINILAADLELNDGILPSVLSQRHHQVWQQLSRTGSMLKGLYYVQRDNKLVNFAHLPIPGSFDASRRNWYQAAIKTPGINVWSAPYLDAIQHVPVITLSRAVLNRQGELLAVIGIDIDLSEISQRIGRLLQGGRQISYLLYDMKNHSVVAHSDPLKNGAPLDDERLAELKGRSGSLLSDNDELIAYYTLTNNPNWRVIIIYPFSNSFVIKELLPTMMVGLLLSLTMYILVAVIFHQRLENTIGMLVQVVRQLRITPPGQPLIIPRIPGIEELEEEITMISDQMLAESEKAQRDALTGLYNRRYMDTLLAELHQQHTPYVLAIIDIDNFKQINDQYGHPAGDSVLRRTASLGSKLLDGKATLCRFGGEELVAIFEQGRLKEAHQQMEQWRRAMGKQNWREPGLTVTFSGGLAEALDAPPAQVLAQADAALYRAKQEGKDRLSLA
>NZ_CP038515.1|WP_017409264.1|421304_421712_+|large-conductance-mechanosensitive-channel-protein-MscL
MSLIQEFKAFASRGNVIDMAVGIIIGAAFGKIVSSFVGDVIMPPIGLILGGVDFSDLAVTLKAAEGSTPAVVIAYGKFIQTIIDFLIISFAIFMGLKAINTLKRKQEEEAAPAGPTKDQELLTEIRDLLKSQQGK
>NZ_CP038515.1|WP_017409263.1|420327_421044_-|thioredoxin-fold-domain-containing-protein
MKYLLLGMMLLGSFAASAGMDPQLLKQTIEQRLGVQVYLVDETPMPGLYMLGTAQGLLYTDARGDYVLQGTMLDLAHDMKNLTMLGLRQQRQLALAQIGERRVQLRAEQERHRVTLFTDLACSSCRTTLAELPVLQARGVSVQLLPVLGTFADLAEAQARWCDPRQFGALDLSDRLPETGCNEILAHHIGLSQWLGIKALPSWVLPNGDLVRGYQSPEQLLKILDHINAPANPSSSAS
>NZ_CP038515.1|WP_043159833.1|418631_420362_-|single-stranded-DNA-specific-exonuclease-RecJ
MPLLIRRRPRVDDSHLPATLHPLLRQIFASRGVEDPALLERSASQLLPPQRLFGMAQAVPLLAEALTAQKRILIVGDFDCDGATSSALCVLALRAMGGRHIDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVDNGISSIAGVAAAKAAGMQVLVTDHHLPGQELPDADAIVNPNQHGCDFPSKSLAGVGVAFYLMAALNTQLRQSGWYERQGLRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRAGRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSLGVACLLSEDINLARQLASEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHRDEWHQGVVGLVASKVKEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTLPKANIEAFGRAFEAVIGELVTPELLTGVLLTDGELLPDELSLELAELIRASGPWGQAFPEPLFDGEFVLVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLQRWPDASVKRVRLVYRLDVNEWRGNRSVQLLVEHLEAAGL
>NZ_CP038515.1|WP_171281447.1|417299_418481_-|MerR-family-transcriptional-regulator
MKISELARRCGLARSTLLYYEKLGVIAGTRAANGYRHYDDEDLQRLRMVQALQAGGLSLKQCLACLAGELEQATLAARVRELDEELAQMQRARDLLADLAGLRAHSGDEFKGWQRQLQHQAPQAYFAWVMKQGFSEKERYHLQWLSKDMNEHERYIRDFKLLLDGMSYWGPGDSLFTQQQFAALPSQPRRILDMGCGRGAATLALAQVTDATMVAIDLDEEALAAVARSASAAGLSQVTTLCANMADLPMELAPADLIWAEGSAYTIGVANALQAWRPYLAGPAACLVLSDLVWLTDTPPEEALAFWQRDYPAMQTLAGLLKTVQEAGYRCLSHTLLPQRAWHNYLDPIERNLARHRAELGDSPAWQDLSREVAIHRQYLGSYGYVICCLQAA
>NZ_CP038515.1|WP_171281446.1|416756_417260_-|N-acetyltransferase
MNIIIRPETGADHDAIEAVTVGAFLNAPHTDHNEQLIVRDLRQAGALSLSLVAELEGRVVGHLCFSPVTISDGSPHWYGLGPISVSPELQGKGLGSRLMDAGLAQLKGIGAAGCVVLGDPGFYGRFGFVSEPGLTLPGVPAEYFMARSFGAAMPRGEVCYHPAFVQA
>NZ_CP038515.1|WP_171283194.1|416127_416439_-|hypothetical-protein
MQLHEPADPGLVNSVSLPPGGQWRLSFEQGRRLEGAAQAELYQVLLAWFQHDILGLLCGLLFFLPLIYLRQLSDYFGYLHRWRLSCHHLQFRFCHSDSCPAAC
>NZ_CP038515.1|WP_024944248.1|428351_428744_+|VOC-family-protein
MLEITKMDNTLVWADIPTRDLDRAMAFYSALLDVPVTPIQEEIRFAMLRHDGNNAAACLGPMDKYHQPGHTGPLIYLALGQRLQEAEQLVPKIGGRVLEPLHSIGSGHGSRVIIEDTEGNWLALYAPPAS
>NZ_CP038515.1|WP_011707051.1|428819_429746_-|L,D-transpeptidase-family-protein
MNPLRTAASALLCTLALVSQQAAAVEYQLPAANSRLIGENQEYVVPADNRPLEQIASDFQLGLTNIMEANPGVDPYLPKAGSKLVIPHQLILPNAPREGIVINVAEMRLYYYPKGKNVVQVLPIGIGQLGVNTPENWITKVERKRANPTWTPTENIRRRYAAQGKTLPAVWPAGPDNPMGLHALYIGNLYAIHGTNATFGIGLRVSSGCVRLRADDIKYLFDNVPVGTRVQFVNQPVKTTVEPDGGRYMEVHEPLSRNEEEFNSTASVPLPMTQATTRFIAHMDSDSNVVKQVLEQRTGMPTRLNPQV
>NZ_CP038515.1|WP_171281449.1|430024_431308_-|glycosyltransferase-family-1-protein
MATILLAATATPGHVNPMLAAARLLVEEGHRVLMLCGALFEQRIRAAGAEFVPFAPEVDFDYRALERHFPERASLSGATQMALALKRFFAAPMAQHDSHLRALLATEGVDLLLVENGFYGVLPLLQQRDGRRLPILMLGVNPVSFSSPDAIFYGPRIPPELRRSLGELPWLDEPTRQLQREVQQSFDAALAEAGAPPLTAPFTDVMVTAPDAFLQLSCAGFEYERPELEGLIRYVGPLLPPRIELTPPPWWERLDERPLVIVSQGTLANVDLGQLLIPAMQGLAGDELQLLLTTGGRDPARLGAAVPANAIVTEHVPFELALPRAAVLVTNGGYGSVQAALAHGVPLVVAGTGEDKAEVATRVAWSGAGINLHSNEPTADAVAAAVRKLVHEPRYRARARLLADEMAALDARAAIVGTVAALLGGQG
>NZ_CP038515.1|WP_024944250.1|431307_432183_-|TauD/TfdA-family-dioxygenase
MTASIVTLGGERCRILPQAPFGLLIEPARNAQPVQSLAIEALRELARRHGVLILRGFESGFTDPERLTRYGEGWGEIMMWPFGAVLDVKEHENATDHIFDSSYVPLHWDGMYKPTLPEFQLFHCVHAPAADEGGRTTFINTRQLLTELDGERLARWERVHITYRIKQVVHYGGQVRSPLLVPHPVSGETVLRYNEPPREGVRFLNQHALEIEGVAPAEQAAFLQDLHQRLYDPRYFYAHQWQGGDVVIADNLGLLHGREGFTARSARHIQRVHIQASPVCLNPALAPQGAA
>NZ_CP038515.1|WP_011707054.1|432193_433168_-|L-tyrosine/L-tryptophan-isonitrile-synthase-family-protein
MSGLSSHHIAQNIFAELLPYRRRFPDPILDRQQEEAEVAAIQIPRLQAFIERGETITCVLPAFPTKSPNPNKVLGTLPDMAERLSLSFLNHLCQRIQLHYAPGMRILICSDGHVFGDLIRVADPAIDAYQAHIEQLILELGATHLGVFHLGMVAGMAEFCASRDFDTLREQLVERYAEPLAQITEEVRSTEEGIRLYRAMTRFLYEDSQLPDTPLSNTALQRDAKARTHAVIQRSRAWGNLLAERFPEAIRLSIHPQASHSLKMGIHMLPTRDDWLTPWHGVAANLDGQFVLMKRRDVLAMEHELVHIHGRPSHYLINGKQAAA
>NZ_CP038515.1|WP_049048193.1|433723_434560_-|patatin-family-protein
MSRRQTALVVEGGAMRGIFAAGVLDAFLAKGRTAFDHCIGVSAGAVNLAAFLAGQQGRNHNVITDYSCRPEFINLAKFLRGGHWLDLDWLWAITIRECRLDLARFAANPVPLTVVATRVADGQAAYLKANAAELEQQIKASCSVPLVYRDFVRIDGEAMTDGGVADSIPVRHAYEQGARDITVVLSRPLGYRKRAPRLPALHRYLLRETPALARASLSRHQSYNDAIDFIRQPPADCRIRVIVPPAGFRVGRMTTDRGRLEQGYQMGWQAALDYLGSA
>NZ_CP038515.1|WP_171281450.1|434700_436062_+|endonuclease/exonuclease/phosphatase-family-protein
MKNISKSLLAAAISLGLMAGCNSQNDSETPTPMVRFATFNLSFDRTAAGMLAGELALSRTEQDALLARLADGTLSGAEKTKALDVQQIRNIAEIIQRTRPDVFLLNEFDNDGKGADTTDLKAFNDNYLAHAQHDEVKAISYPVLQNFATNTGLMSGHDLNLDGKVNNGPDDAWGFGNYHGQYAFAVMSQYPIDTKQIRTFQKFKWKDMPGEVNPVIDDCNNAKAPIPAGRQCGDAWYDDAAWQAFPLSSKNHADVPVRIKRGNKEEVIHFLISHPTPPIFGNAARHNVKHNRAEVAFWQDYVETASYMVDDAGKAGGLAEGAKFVIAGDLNADPQIGDGDLTAIQDLHNHVLVNQAVTNGALIPVSQGGPECLASQPDQCKRNNNRPTPERITSSSGLQLDHVLPSANLNAVASGVFWPASFEPGYHLVYDAKLGIAKGVSSDHRLVWVDFKL
>NZ_CP038515.1|WP_171281451.1|436118_439226_-|tetrathionate-reductase-subunit-TtrA
MDHSKRKFLKGAAIAGGTGLFVAGYSDTLKQVATGLATGSSGQPTRDPIHGNSLAVEYRVDEQGELHPNPAQRVANTMCLGCWTLCGVRARIDNERDQIVRILGNPYHPLSARHHIDFKTPVKQALLATSGYQEGGLDGRSTACARGNAMLEQLDSPQRVTRCLKRVGPRGSGRWQSIPFEQLVAEVVEGGDLFGEGQVDGLRAIRNLAEPLDPANPEYGPRANQLLVSNASDEGRDHFIKRFTFNSFGTRNFANHGAYCGLSFRVGAGALLDDLEKNAHLKPDWDESDFLLFMGTSPQQSGNPFKRQSRQLAANRARPGKPFSYVVVAPSLPNTVNMPSAPANRWLPIRPATDSALAMAMLRWIIDNDRYAESFLTAPHAAAAERAGYRGFCNASHLVVCDEGHPRFGQMLRASDLGLPFDGEAYGEGDAMLVEEAGSGEPRPADQCERANLWVDRTIQGPKGALMVKSSFQLLAEACREHTLAQYSAECAVPVSDIEALAREFTSHGTRAAVVSHGGTMSANGFYSAWAIMMLNVMVGNLNARGGAVASGGKFDPFGAGPRYDLASFPGMVKPTGVFLSRSKFPYEKTSEYRRKREAGQNPYPAQEPWFPISGPLLGEHLTAAVNGYPYRLKAWINHMGNPLYGQAGLAKAIGEQLKDPKVLPLFISIDSFINESSALSDYLVPDTLTYESWGWATAWHGVMTKVSTGRWPIVEPRVANTAEGEPVCMESFFIAVAKRLGLPGFGEGALKGADGKVHGLNRAADFSLYGAANVAYLGEPVPAIDPEDLAWSGVERILPVLNATLSAEEAGRAAYLFARGGRFEPAAKGRDEAGQPSKRWPKPLMVWNPEVGSRRHSQSGQFLSGTPRFFRPQLADGTPLNEAFKPAQWPLLLTSYKSHTMSSMSIGSDRLRQVNPSNRVRLNAQTAAQLGIESGDRVRVSTPDGSVIGVAECVAGVQADAIAIEHGFGHKELGAREHWIDGQKVVANPLRGAGVNLNDLAVLDPSRHGRYPLVDWAIGSSARQGLPARVEKLV
>NZ_CP038515.1|WP_171281452.1|439225_440332_-|polysulfide-reductase-NrfD
MVINELLAPAQPITWLPWAVQYFFLIGLAYGALWLGAFELWRKAPDPRLQTLAAVLMVAAGLVAPIALTADLHQPARAWHFYAQTRVGSIMWYGAYLLPLFSLLSMLLGWLLLRPALARRGAEGDKIARLARLLCLGNWSGHVWLRPLSLLAALSGLSIALYTGLETMAVAARPLWHTPWLPWLLTLSAVLGAQSALLLLNRLLTGWGAETESTLLRQGGWTLGLLALSLLGWALFGGASAAEAAALYRLDPSWRLAVHWLLLTLGLASLLMLMRRRISARLALWGLGLLGLHLVWGLRWLLLIQGQLAPKYGAGVYLYEIAWGPAGVLGILGTFGLLLALLVALSELVRPSVSPAIKAPTPFAREAL
>NZ_CP038515.1|WP_171281453.1|440321_441110_-|4Fe-4S-dicluster-domain-containing-protein
MEPSKRRLLSGIAALTAGAALIPVTQVQAQSVPAPRNGRAAIHRGDGRKRYGMLIDLRRCVGCQACTVACTIENQPPLGQFRTTVSQYEVSDVAALEAPASLLMLPRLCNHCAEPACLDVCPTGATFQRDDGIVVVNNDWCVGCGYCVQACPYDARFINHETNTADKCTFCAHRLEAGLLPACVESCVGEARIIGDLNDPKSRVSRLLRQHEPALKVLKPEANTQPRVFYLGMDEAFVSKVDGNPALRTLLTDDGKEIAHGH

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Crispr_ID: NZ_CP038515_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_3

772773-772866

Orphan

Consensus_repeat	Method
GGCTGGCGAATCGTTGCTACCTGCCGACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_3

>merge|NZ_CP038515|3|772773-772866|CRISPRCasFinder
GGCTGGCGAATCGTTGCTACCTGCCGACCTCAAGCCAGCCGGCCCCATAAGCCATCGCCTGCCGGCTGGCGAATCGTTGCTACCTGCCAACCTC

>NZ_CP038515|3|3|772773-772866|CRISPRCasFinder
GGCTGGCGAATCGTTGCTACCTGCCGACCTC	AAGCCAGCCGGCCCCATAAGCCATCGCCTGCC
GGCTGGCGAATCGTTGCTACCTGCCAACCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_171281579.1\|782788_783655_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP038515.1\|WP_016351946.1\|770119_770545_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP038515.1\|WP_171281576.1\|774740_776882_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP038515.1\|WP_102987970.1\|774291_774684_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP038515.1\|WP_171281580.1\|783725_784799_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP038515.1\|WP_171281578.1\|779141_781331_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831
NZ_CP038515.1\|WP_011707358.1\|781677_782673_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP038515.1\|WP_171281575.1\|773059_774211_+\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP038515.1\|WP_171281568.1\|765366_766188_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523
NZ_CP038515.1\|WP_171281581.1\|784939_787045_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038515.1\|WP_171281582.1\|788625_789435_-\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|182745
NZ_CP038515.1\|WP_171281571.1\|769856_770084_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171281569.1\|766490_767732_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP038515.1\|WP_005304873.1\|769393_769711_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP038515.1\|WP_171281573.1\|771216_772221_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP038515.1\|WP_005304871.1\|768827_769304_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP038515.1\|WP_171281572.1\|770687_771134_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP038515.1\|WP_011707344.1\|764752_765316_+\|DUF2799-domain-containing-protein	unknown	unknown	gnl\|CDD\|378521
NZ_CP038515.1\|WP_171281570.1\|767898_768519_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP038515.1\|WP_171281577.1\|776881_779059_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_016351946.1\|770119_770545_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.50891e-20
NZ_CP038515.1\|WP_171281576.1\|774740_776882_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP038515.1\|WP_171281572.1\|770687_771134_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	3.95576e-56
NZ_CP038515.1\|WP_171281580.1\|783725_784799_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP038515.1\|WP_171281578.1\|779141_781331_-\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP038515.1\|WP_011707358.1\|781677_782673_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP038515.1\|WP_171281575.1\|773059_774211_+\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	3.65653e-65
NZ_CP038515.1\|WP_171281568.1\|765366_766188_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	1.15196e-84
NZ_CP038515.1\|WP_171281581.1\|784939_787045_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.77643e-64
NZ_CP038515.1\|WP_171281582.1\|788625_789435_-\|tol-pal-system-protein-YbgF	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	2.56864e-64
NZ_CP038515.1\|WP_171281579.1\|782788_783655_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	1.28797e-119
NZ_CP038515.1\|WP_171281569.1\|766490_767732_-\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.34131e-41
NZ_CP038515.1\|WP_005304873.1\|769393_769711_-\|hypothetical-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	0.00960974
NZ_CP038515.1\|WP_171281573.1\|771216_772221_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	5.34087e-172
NZ_CP038515.1\|WP_005304871.1\|768827_769304_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.22775e-48
NZ_CP038515.1\|WP_102987970.1\|774291_774684_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	2.18709e-74
NZ_CP038515.1\|WP_011707344.1\|764752_765316_+\|DUF2799-domain-containing-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	5.77187e-28
NZ_CP038515.1\|WP_171281570.1\|767898_768519_+\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	7.06218e-54
NZ_CP038515.1\|WP_171281577.1\|776881_779059_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0

>NZ_CP038515.1|WP_171281573.1|771216_772221_+|NADP-dependent-oxidoreductase
MNQSSHQIQLLRRPVGLPSLADFTLTEVALPELQEGEVRVTNQWLSVDPYMRGRMSEAKSYVPPFPLNGPLDGGAIGVVEASRHPDFAVGDRVSSMLGWRDRFVANGAQLTRLPDTRLPPQLFLGALGMPGMTAWTGLNRIAKLQSGETVLVSAASGAVGSMVVQLAKRAGARVIGSTGSADKVAYLKSLGADEVINYRETPDLDAELARLAPEGIHVYFENVGGAMLDAALNHMVVHGRIVMCGLIEQYNGQSEASGPRNLSQVIRKRLTMQGLIVFDHWQHYGEFLAEVTPAFDAGTLQAEETVYQGLASMPQAFIGLFEGRNTGKMLVKLA
>NZ_CP038515.1|WP_171281572.1|770687_771134_+|organic-hydroperoxide-resistance-protein
MKTLYRTQAIAQAGRNGEVHTQNNSLQLALALPTALGGNGKGNNPEQLLAAGYAACFSNALIHVAHKLDAPLSSAPVTAGVELLALDDGRFNFAITLDVVLATTQPEQAAQAEQIVRLAHQTCPFSNAMRGNVVTRLRLNGAPLDETA
>NZ_CP038515.1|WP_016351946.1|770119_770545_-|MarR-family-transcriptional-regulator
MSELKKQVCFALYSASNAVMRAYRPLLDKLDLTYTQYLVMLSLWARDEVSLKEIGQETGLDAGTLTPIVKRLESKGWLTRTVSSEDERQKCIGLTEAGRQLQQEVRECCLADNLRNQVDLADAELAQLKQLCDRISAQLGR
>NZ_CP038515.1|WP_171281571.1|769856_770084_-|hypothetical-protein
MKLLLPLFALLLTACSAGSHAPSMAIDDADAWQAICKDGTRVRAVVEEGSCADHRGVAMWTNKPRAARMAEEAAK
>NZ_CP038515.1|WP_005304873.1|769393_769711_-|hypothetical-protein
MQSSLVGLSILWGLASFGVQGDFIESRDSVAPSWQAESRVEMEGYLIESLGEDRWLFDNGSESLLVSLPQGQWVPTGERLRVSGEPQQEQAGWLLQVQDVSQVAV
>NZ_CP038515.1|WP_005304871.1|768827_769304_+|Lrp/AsnC-family-transcriptional-regulator
MLKLDRIDRHILELMQENGRISNLELAELVGLSPSPCSRRVKALEDAGLIDTHVTLLNARQLGLTLTAYIHISMDRHTPERFENFDRAISELPEVLECDLITGNDADYQLKVVVRDMEHYQHFLLDKLTHIPGVTGVRSSFVLRRIKHKTALPLNHLG
>NZ_CP038515.1|WP_171281570.1|767898_768519_+|transcriptional-regulator
MNASTDKILFLLKSHGPQSAAELGEQLQMTSMGARQHLMTLEADGWVSFNDEARGRGRPVRLWHLTEQAWQRFPDSHSELTLQLIDNIQQLFGEVGMERLIAQREQQQLARYQAELTQPALADRLAALTAQRTREGYMADYRQEEDGSWLLWESHCPICAAARACRGFCRSELEMFRHLLAPAGVEREQYLLEGDHRCLYRIRPQP
>NZ_CP038515.1|WP_171281569.1|766490_767732_-|MFS-transporter
MEGIKGQASLWVLVMTVTLAVAGFSLPSPVLAPLLLDPAQGMLTPEASDWSRKVWLGVIMGLYPLFQLVGAPWLGKLSDRHGRKPVLTLCLVGVLVGYALMALGIAWRSLPLLLLSRVVEGFFNGDIAIVQAMAADMSTAKTKARSFAWINIGMNLGWVVGPMIGGYAAVVSGDYSLAAWLAVAMTLVNLLLVLWLLPNRPAAARSEQPAPALSSRQLLLQPALLPYFVLTLLSYGAVQLYFTYFNVWLVERLAWDPVQLAQAAVLVSVPMILGSWLGSRLARHWRGSSLGVVGHLVMAAGMLMFVLPGHWWGLALTFIPTGIGMSLGELATSVAVSNRSHAEQQGQAMGLYRGLAVGSEILAVVVGSLVLLAGTEWPFYLAALCSLLCAVGFYGLRRAADRRQRLDVQVEAG
>NZ_CP038515.1|WP_171281568.1|765366_766188_-|Cof-type-HAD-IIB-family-hydrolase
MSRFQAIALDMDGTLLTRDHKISSATRAALAQARAHGIKVLLVTGRHFMTARPFHHELALDTPIICSNGAYLYDPVQEKILAGDPLAVAPLSRLLAEVQAHQMGALFHLDEGIGYLGCEEHVTRMRHWSASQPDHLKISLLPAEDLASWLSRPVWKLELFNQDPALLHHFMAEVVEQLPFTRDWAAPYAVELVQPGCSKGNRLAQWAASEGIAMENVVAFGDNNNDISMFEQVGLAVAMGNAASQIQALADRVTADHNEDGIALALQRWVLPA
>NZ_CP038515.1|WP_011707344.1|764752_765316_+|DUF2799-domain-containing-protein
MSPKILLLTLPFLLAGCSSLSEEECRTMSWYNLGYQDGEQGKTRAATRDYVSTCGEYGLKVDEAEWKRGYAKGLELYCIPELAYSKGKSGAEYQGVCPNDASFLTQYDRGRQEYLVEKQLSDLKSDMERTERDIETLERQIRNENDSKQRDYYRAQRERAIRHYEGLRRDYNRIRFPDRVIQFSFGN
>NZ_CP038515.1|WP_171281575.1|773059_774211_+|chromate-efflux-transporter
MGQVFIQFLWLGCVSFGGPAAHIGYFQRTFVERLGWLTQAEFAQLLALCQLLPGPASSQLGFAIGRQRAGLGGALAAFAGFTLPSFLLLLAAAIGLGQLGNNVWLDAALHGLKLLALVVVADAVLTMSRQFCKTTRNQGIMVATAAALWWQPGLLTQLVMLAGAVLLCARVGAPQTPDPQPSPAQSIPVHQPHWPTLLLFALLFVGLPLLGGPVGQLVADFYRAGSLVFGGGHVVLPLLAESVGHSLNQQQFLTGYSLAQLVPGPMFTLATYLGAQLLPASPVGGALLAILALFLPGFLLLWAMGPCWQSWLARPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPTDLALAAIGFYLLRGLKLPILALATLLVVATLLLA
>NZ_CP038515.1|WP_102987970.1|774291_774684_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSGNIPNPEQWRRQLSAEQYHVCWEKGTERPYSGALLHNRKSGDYLCVCCKQVLFHSDAKFDSGCGWPSFDRAIEGTVTYTEDGSHGMKRVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLDFDPEP
>NZ_CP038515.1|WP_171281576.1|774740_776882_-|glycogen-debranching-protein-GlgX
MFVMEKGQDHPLGALLDETGCHFCVWAPQSDKVELCLFDEQERELARLELPGRRGQYRFGHVRGVKAGQRYGYRVHGTSQEGMLFDPDKLLIDPYAKALSRPTHWDDALYQGDSAAMVAKSVVVDDAFDWQGVGKPAIEPARTVIYETHVKGFTRQHQGVPSELRGTYLGICHPLIIEHLKSLGITSVQLMPVAAFMSEPRLEQLGLTNYWGYNPIAFFAPEPRYAAQEAVTEFKTMVRELHRAGLEVILDVVYNHTAESGFDGPMLSFKGFDNAGYYAFEAGAHGPDYTRHANVTGCGNSVNLDHPNSLRLVLDALRYWVTEMQVDGFRFDLAVTLAREAGEFDPMGAFFKAMMADPVLARVKLIAEPWDIGPFGYRLGQFPSQWLEINDRYRDTVRAFWRGDAGKMGDFATRLVGSRDLFPKNWRSPHTSVNYLCYHDGFTLEDLVSYNQRHNQANGEDNRDGHGNNLSNNHGVEGPTLDPRVNNLRQQQKRNLIATLLLSQGTPHFLAGDEMGRSQLGNNNAYCQDNQISWVNWQWRPEDERLLAFTQQMLALRAESTVFSNLQLSDDSWNGAPNSCHQVNWYHPDGHQLTDQDWHAPMGQAFAMDIGMIGCGGERWYVLFNASDYDIQFRLPPPGEGLEWIQTIDTATNDGLPFLPDDIKRQVAVGRAHSLKLLERVALSAVALAEEGVVATPDVAVVLPSGSQFPLAG
>NZ_CP038515.1|WP_171281577.1|776881_779059_-|1,4-alpha-glucan-branching-protein-GlgB
MLVERLVAARCSDPFSHLGLQANPDGPGLKLTVWLPDAQAVRVRDLKSGKIVATLAPTDDSGLFETVFTRRKNPFPYQLLADYPDATVEVIDPYQFQDAGWAGLAELTYQPENLYHTLGAQLRTVVHLDQQVEGVRFAVYAPSATAVSLIGDFNFWDGRRHPMQRSQCGHWVLFVPGLKAGDRYKFELKDPAGNRLPHKSDPVGFYCEQYPSFASVVYDHDQYQWQDAAWRESQLNDKREQPLSIYELHVGSWKRHPNGDSLSWRELAVELVDYVKGMEYTHIELLPVSEHPFSGSWGYQPVGMFSPTSRYGTADDFKYFVDQCHQAGIGIILDWVPAHFPSDAHGLARFDGTPLYEYEDPRRGWHPDWNSYIYDFGRNTVRQFLVASALFWLDKFHVDGLRVDAVASMLYLDYSRNAGEWVPNVDGGNHNYEAISLLKWTNEEVYGKYPHAMTIAEESTAFAGVSRPTFLGGLGFGFKWNMGWMHDTLTYMQKEPIHRRYHHNDMTFSMVYHYDENFILSLSHDEVVHGKHSMLYKMPGDEWQQAANLRAYMGFMYAHPGKKLNFMGTEIAQSNEWNHDAQLPWHLLQYPKHGGQQRLIHDLNHLYRHEAALYQADYEQNGFRWLDHNDADNSIFAWLRADKQGANPLVIACNFTPVPRLAYRLGVPTAGHYRVVLNTDSEHYWGSNYDVGLVFVAEPTPWQGMAYSIVLDLPPLATLFIKQES
>NZ_CP038515.1|WP_171281578.1|779141_781331_-|4-alpha-glucanotransferase
MTTLIEQLAAAKGIASEYVDAWGHPAQVSEESKAAMLGAMGYRVDDEAALTEQLEQEHRQHWLRALDPVMVVRSGEPITLEVRLPIEFVNDALSWQLKLEQGGLLSGQLTPIDGELVGVAEFEEMECQAYRVALDVQPELGYHDLILLEEGNDEPLASMRLIVAPKACYKQPPIANGRKVWGPSVQLYCLRSRHNWGIGDFSDLGQLVEKMAAWGAHFVGLNPIHALYPANPESASPYSPSSRRWLNVAYIDVEAVPEFLANARLKAEVANPAFQQHLSELRAKGNVDYTGVVETKLGMLRQVFDQASLSAERQAAFDAFVAAGGDSLQQQAAFDALQAHFYAKGENAWGWPVWPEPFRDYHNPEVAAWMAEHSQDVNFYLYLQFLADEQLARADARAKAAGMVMGIYRDLAVGVSEGSTEIWANRDLYCPKASVGAPPDILGPLGQNWGLPPMNPNQLFEAAYQPMVDLFRANMRSCGALRIDHVMALLRLWWVPPGESAAKGAYIYYPVNDLLGILALESHRNQCLLIGEDLGTVPEGIDVTLKENGVHSYKVFFFERSKGDGGFISPAHYAEQAMSALTTHDMPTLKGFWHCDDLALGRELGLYPDEDVLKTLYADRHQAKQRILDSLHGHGVISGNISHDVNWVGMNTELNHGLQLHMSRGSCALFSTQLEDWLEMDKPVNVPGTSYEYPNWRRKLSTDLEDIFANEALKALAGKMSQARDEASR
>NZ_CP038515.1|WP_011707358.1|781677_782673_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVGINGFGRIGRFVFRLAAERSDIEVVGINDLIDVDYMAYMLKYDSTHGRFKGTVEVKDGNLVVNGKTVRVTAERDPANLKWGEIGVDVVAEATGLFLTDETARKHIAAGAKKVVLTGPSKDATPMFVMGVNDATYAGQDIVSNASCTTNCLAPIAKVLNDTFGIESGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGVVIPELKGLLTGMAFRVPTPDVSVVDLTVNLKKAATYAEICEAMKAASEGAMKGVLGYTEDEVVSTDFLGERQTSVFDAKAGIQLNDKFVKVVSWYDNEMGYSSKVLDLIAHISK
>NZ_CP038515.1|WP_171281579.1|782788_783655_+|D-hexose-6-phosphate-mutarotase
MQPTRSLTAHCTLSHHPAGQPLLTVDNGYAKAEISLFGAHVLSYQRHDEPASIWLSDKAVLDGSKPIRGGIPLCWPWFGPAPARVGSGKPSHGFARTSLWTLDGVSDHGDGTLVHLSLRDNEATRQLWPHAFELELDVLVGKELALVLTTRNTGKAPLVYSGALHTYLQISSPESVSVSGLGEPYADKLSGQNGQQQGPLTLNGPLDRVYWQPAAHVSIQDGERETRVVSGNHDSVVVWTPWLEGARAMADMSDDGYRTMLCVEAAIASEAGVTVAPDEEHSFSTVII
>NZ_CP038515.1|WP_171281580.1|783725_784799_-|quinolinate-synthase-NadA
MSNALNNVPPVVEMDYPFPAKPLPLSAEQKTTLIADIKALLKERKAVLVAHYYTDPEIQALAEETGGFVGDSLEMARFGRDHAAQTLIVAGVRFMGETSKILSPHKRVLMPTLEAECSLDLGCPIEQFSAFCDAHPDHIVVVYANTSAAVKARADWVVTSSIALEIVEHLDSQGHKIIWGPDRHLGAYIEKKTGAEMLRWQGHCIVHDEFKARALRELKEQNPDAAVLVHPESPASVIELADAVGSTSQLIKAAKELPQQKLIVATDRGIFYKMQQACPEKEMVEAPTGGDGATCRSCAHCPWMAMNGLVAIKEALTDGAERHEILVDEDLRVKALIPLDRMLNFAAELKLKTQGNT
>NZ_CP038515.1|WP_171281581.1|784939_787045_+|methyl-accepting-chemotaxis-protein
MKQRSLKTKLLLLTMGLFLASGLAMTLMQSSSLNTLRSNIVSQTRQALEQEVSRTLQFQAERYAVQIADLLQQSYQVPLGMAAQLEGSMAQPDRLLSRPQVETLLHSRLQQAGGISSIYAQFEPDGYDGQDANWQAGASHSVVGKGSLEIYFTRDQGGQISQQPVDAATSAAKYDTSVNEFGIRNSEWYLCGRDTLRPCLMEPYLYEISPGNKMLMTSLTVPVLKAGKFAGITGVDMNLPIFQQLAENLGKSLYDNQAEVTLVSKMGLIVGSNRHADKLGRPLTEAGLTAPTGQEQDTETDFILQQPVRIDAADTQWWLMLKVPKALALSQANTISNQLGDLLQATQQQQLIAIVVITLLALALLIWFIQTITAPLSLISRHVSHLSSNEGDLTQQMRIDTHQELIELGGHLNAFLGKLRGMVQGSKQIGQQVHQQAQGMKQTADTMRSSLDEQSLELESVVSAMHQMSTTAVSVAGYAEQAAQESETATHHISTAQQTLSRARTEIHTLVEDMHLADKAVAQVAQRSTNISRILDVIRAIAEQTNLLALNAAIEAARAGDMGRGFAVVADEVRALANKTRESTDEIGQLIGSLQTEVNSSQQLMSTGITRSASTVEGTEQAFEALNQVVTQIQQIHDHISQVATAAEQQSAVSDTINQNLMRIGDAATTLGQEANASHHLSEQLEQAATALATQLDRLRT
>NZ_CP038515.1|WP_171281582.1|788625_789435_-|tol-pal-system-protein-YbgF
MKSVYKQAVVALAVLVALNAQAAAPVSDLSGDSGGGVVLNGNNGAIVPTGSLEDRVALLERTLNARLRLQAELQQQVDSLQGEVSELRGQLEQQTYQMEQSQERQRQLYQELDKVANSQPAATPAAPAAAAASPTPAAAANYSTNLNENQAYDAAVNMVLKEKNYDKAIPAFEGFIKQYPSSSYVPNAHYWLGQLLFNKGDRTGAAAQFTTVATKFSKSPKRADALLKLGMLAQLDGKKAEAKNFYEQVIKGYPNTSPAQLAKQSLSKL

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Crispr_ID: NZ_CP038515_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_4

789426-789530

Orphan

Consensus_repeat	Method
CAGATTTCATTCGGATCAAACCTTAGCGTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_4

>merge|NZ_CP038515|4|789426-789530|CRISPRCasFinder
CAGATTTCATTCGGATCAAACCTTAGCGTTTAGGGCAAATAAAACGGCCAGCGCCATCGTCGCTCGCTTATGCAGATTTCATTCGGATCAAACCTTGGCGTTTAG

>NZ_CP038515|4|4|789426-789530|CRISPRCasFinder
CAGATTTCATTCGGATCAAACCTTAGCGTTTAG	GGCAAATAAAACGGCCAGCGCCATCGTCGCTCGCTTATG
CAGATTTCATTCGGATCAAACCTTGGCGTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_171281581.1\|784939_787045_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038515.1\|WP_171281576.1\|774740_776882_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP038515.1\|WP_011707369.1\|794823_795960_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP038515.1\|WP_171281580.1\|783725_784799_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP038515.1\|WP_005304908.1\|789593_790118_-\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744
NZ_CP038515.1\|WP_011707358.1\|781677_782673_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP038515.1\|WP_171281575.1\|773059_774211_+\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP038515.1\|WP_011707365.1\|792756_793203_-\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NZ_CP038515.1\|WP_016351959.1\|794394_794640_-\|cyd-operon-YbgE-family-protein	unknown	unknown	gnl\|CDD\|370577
NZ_CP038515.1\|WP_011707366.1\|793202_793892_-\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP038515.1\|WP_011707364.1\|791587_792751_-\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|368950
NZ_CP038515.1\|WP_171281574.1\|772378_772822_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240034
NZ_CP038515.1\|WP_005304933.1\|794692_794809_-\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
NZ_CP038515.1\|WP_011707370.1\|795972_797529_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052
NZ_CP038515.1\|WP_171281579.1\|782788_783655_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP038515.1\|WP_171281578.1\|779141_781331_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831
NZ_CP038515.1\|WP_171281583.1\|790167_791493_-\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235312
NZ_CP038515.1\|WP_171281584.1\|793881_794289_-\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304
NZ_CP038515.1\|WP_102987970.1\|774291_774684_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP038515.1\|WP_171281577.1\|776881_779059_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_171281581.1\|784939_787045_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.77643e-64
NZ_CP038515.1\|WP_171281576.1\|774740_776882_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP038515.1\|WP_011707369.1\|794823_795960_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	1.31458e-166
NZ_CP038515.1\|WP_171281580.1\|783725_784799_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP038515.1\|WP_005304908.1\|789593_790118_-\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	3.5678e-77
NZ_CP038515.1\|WP_011707358.1\|781677_782673_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP038515.1\|WP_171281575.1\|773059_774211_+\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	3.65653e-65
NZ_CP038515.1\|WP_011707365.1\|792756_793203_-\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	5.92405e-42
NZ_CP038515.1\|WP_016351959.1\|794394_794640_-\|cyd-operon-YbgE-family-protein	gnl\|CDD\|370577	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE). This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.	4.12912e-18
NZ_CP038515.1\|WP_011707366.1\|793202_793892_-\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	7.20038e-107
NZ_CP038515.1\|WP_011707364.1\|791587_792751_-\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|368950	pfam06519, TolA, TolA C-terminal. This family consists of several bacterial TolA proteins as well as two eukaryotic proteins of unknown function. Tol proteins are involved in the translocation of group A colicins. Colicins are bacterial protein toxins, which are active against Escherichia coli and other related species (See pfam01024). TolA is anchored to the cytoplasmic membrane by a single membrane spanning segment near the N-terminus, leaving most of the protein exposed to the periplasm.	8.70811e-21
NZ_CP038515.1\|WP_171281574.1\|772378_772822_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240034	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.30835e-52
NZ_CP038515.1\|WP_005304933.1\|794692_794809_-\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	9.94001e-13
NZ_CP038515.1\|WP_011707370.1\|795972_797529_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NZ_CP038515.1\|WP_171281579.1\|782788_783655_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	1.28797e-119
NZ_CP038515.1\|WP_171281578.1\|779141_781331_-\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP038515.1\|WP_171281583.1\|790167_791493_-\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235312	PRK04792, tolB, Tol-Pal system protein TolB.	0
NZ_CP038515.1\|WP_171281584.1\|793881_794289_-\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	6.70109e-54
NZ_CP038515.1\|WP_102987970.1\|774291_774684_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	2.18709e-74
NZ_CP038515.1\|WP_171281577.1\|776881_779059_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0

>NZ_CP038515.1|WP_171281581.1|784939_787045_+|methyl-accepting-chemotaxis-protein
MKQRSLKTKLLLLTMGLFLASGLAMTLMQSSSLNTLRSNIVSQTRQALEQEVSRTLQFQAERYAVQIADLLQQSYQVPLGMAAQLEGSMAQPDRLLSRPQVETLLHSRLQQAGGISSIYAQFEPDGYDGQDANWQAGASHSVVGKGSLEIYFTRDQGGQISQQPVDAATSAAKYDTSVNEFGIRNSEWYLCGRDTLRPCLMEPYLYEISPGNKMLMTSLTVPVLKAGKFAGITGVDMNLPIFQQLAENLGKSLYDNQAEVTLVSKMGLIVGSNRHADKLGRPLTEAGLTAPTGQEQDTETDFILQQPVRIDAADTQWWLMLKVPKALALSQANTISNQLGDLLQATQQQQLIAIVVITLLALALLIWFIQTITAPLSLISRHVSHLSSNEGDLTQQMRIDTHQELIELGGHLNAFLGKLRGMVQGSKQIGQQVHQQAQGMKQTADTMRSSLDEQSLELESVVSAMHQMSTTAVSVAGYAEQAAQESETATHHISTAQQTLSRARTEIHTLVEDMHLADKAVAQVAQRSTNISRILDVIRAIAEQTNLLALNAAIEAARAGDMGRGFAVVADEVRALANKTRESTDEIGQLIGSLQTEVNSSQQLMSTGITRSASTVEGTEQAFEALNQVVTQIQQIHDHISQVATAAEQQSAVSDTINQNLMRIGDAATTLGQEANASHHLSEQLEQAATALATQLDRLRT
>NZ_CP038515.1|WP_171281580.1|783725_784799_-|quinolinate-synthase-NadA
MSNALNNVPPVVEMDYPFPAKPLPLSAEQKTTLIADIKALLKERKAVLVAHYYTDPEIQALAEETGGFVGDSLEMARFGRDHAAQTLIVAGVRFMGETSKILSPHKRVLMPTLEAECSLDLGCPIEQFSAFCDAHPDHIVVVYANTSAAVKARADWVVTSSIALEIVEHLDSQGHKIIWGPDRHLGAYIEKKTGAEMLRWQGHCIVHDEFKARALRELKEQNPDAAVLVHPESPASVIELADAVGSTSQLIKAAKELPQQKLIVATDRGIFYKMQQACPEKEMVEAPTGGDGATCRSCAHCPWMAMNGLVAIKEALTDGAERHEILVDEDLRVKALIPLDRMLNFAAELKLKTQGNT
>NZ_CP038515.1|WP_171281579.1|782788_783655_+|D-hexose-6-phosphate-mutarotase
MQPTRSLTAHCTLSHHPAGQPLLTVDNGYAKAEISLFGAHVLSYQRHDEPASIWLSDKAVLDGSKPIRGGIPLCWPWFGPAPARVGSGKPSHGFARTSLWTLDGVSDHGDGTLVHLSLRDNEATRQLWPHAFELELDVLVGKELALVLTTRNTGKAPLVYSGALHTYLQISSPESVSVSGLGEPYADKLSGQNGQQQGPLTLNGPLDRVYWQPAAHVSIQDGERETRVVSGNHDSVVVWTPWLEGARAMADMSDDGYRTMLCVEAAIASEAGVTVAPDEEHSFSTVII
>NZ_CP038515.1|WP_011707358.1|781677_782673_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVGINGFGRIGRFVFRLAAERSDIEVVGINDLIDVDYMAYMLKYDSTHGRFKGTVEVKDGNLVVNGKTVRVTAERDPANLKWGEIGVDVVAEATGLFLTDETARKHIAAGAKKVVLTGPSKDATPMFVMGVNDATYAGQDIVSNASCTTNCLAPIAKVLNDTFGIESGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGVVIPELKGLLTGMAFRVPTPDVSVVDLTVNLKKAATYAEICEAMKAASEGAMKGVLGYTEDEVVSTDFLGERQTSVFDAKAGIQLNDKFVKVVSWYDNEMGYSSKVLDLIAHISK
>NZ_CP038515.1|WP_171281578.1|779141_781331_-|4-alpha-glucanotransferase
MTTLIEQLAAAKGIASEYVDAWGHPAQVSEESKAAMLGAMGYRVDDEAALTEQLEQEHRQHWLRALDPVMVVRSGEPITLEVRLPIEFVNDALSWQLKLEQGGLLSGQLTPIDGELVGVAEFEEMECQAYRVALDVQPELGYHDLILLEEGNDEPLASMRLIVAPKACYKQPPIANGRKVWGPSVQLYCLRSRHNWGIGDFSDLGQLVEKMAAWGAHFVGLNPIHALYPANPESASPYSPSSRRWLNVAYIDVEAVPEFLANARLKAEVANPAFQQHLSELRAKGNVDYTGVVETKLGMLRQVFDQASLSAERQAAFDAFVAAGGDSLQQQAAFDALQAHFYAKGENAWGWPVWPEPFRDYHNPEVAAWMAEHSQDVNFYLYLQFLADEQLARADARAKAAGMVMGIYRDLAVGVSEGSTEIWANRDLYCPKASVGAPPDILGPLGQNWGLPPMNPNQLFEAAYQPMVDLFRANMRSCGALRIDHVMALLRLWWVPPGESAAKGAYIYYPVNDLLGILALESHRNQCLLIGEDLGTVPEGIDVTLKENGVHSYKVFFFERSKGDGGFISPAHYAEQAMSALTTHDMPTLKGFWHCDDLALGRELGLYPDEDVLKTLYADRHQAKQRILDSLHGHGVISGNISHDVNWVGMNTELNHGLQLHMSRGSCALFSTQLEDWLEMDKPVNVPGTSYEYPNWRRKLSTDLEDIFANEALKALAGKMSQARDEASR
>NZ_CP038515.1|WP_171281577.1|776881_779059_-|1,4-alpha-glucan-branching-protein-GlgB
MLVERLVAARCSDPFSHLGLQANPDGPGLKLTVWLPDAQAVRVRDLKSGKIVATLAPTDDSGLFETVFTRRKNPFPYQLLADYPDATVEVIDPYQFQDAGWAGLAELTYQPENLYHTLGAQLRTVVHLDQQVEGVRFAVYAPSATAVSLIGDFNFWDGRRHPMQRSQCGHWVLFVPGLKAGDRYKFELKDPAGNRLPHKSDPVGFYCEQYPSFASVVYDHDQYQWQDAAWRESQLNDKREQPLSIYELHVGSWKRHPNGDSLSWRELAVELVDYVKGMEYTHIELLPVSEHPFSGSWGYQPVGMFSPTSRYGTADDFKYFVDQCHQAGIGIILDWVPAHFPSDAHGLARFDGTPLYEYEDPRRGWHPDWNSYIYDFGRNTVRQFLVASALFWLDKFHVDGLRVDAVASMLYLDYSRNAGEWVPNVDGGNHNYEAISLLKWTNEEVYGKYPHAMTIAEESTAFAGVSRPTFLGGLGFGFKWNMGWMHDTLTYMQKEPIHRRYHHNDMTFSMVYHYDENFILSLSHDEVVHGKHSMLYKMPGDEWQQAANLRAYMGFMYAHPGKKLNFMGTEIAQSNEWNHDAQLPWHLLQYPKHGGQQRLIHDLNHLYRHEAALYQADYEQNGFRWLDHNDADNSIFAWLRADKQGANPLVIACNFTPVPRLAYRLGVPTAGHYRVVLNTDSEHYWGSNYDVGLVFVAEPTPWQGMAYSIVLDLPPLATLFIKQES
>NZ_CP038515.1|WP_171281576.1|774740_776882_-|glycogen-debranching-protein-GlgX
MFVMEKGQDHPLGALLDETGCHFCVWAPQSDKVELCLFDEQERELARLELPGRRGQYRFGHVRGVKAGQRYGYRVHGTSQEGMLFDPDKLLIDPYAKALSRPTHWDDALYQGDSAAMVAKSVVVDDAFDWQGVGKPAIEPARTVIYETHVKGFTRQHQGVPSELRGTYLGICHPLIIEHLKSLGITSVQLMPVAAFMSEPRLEQLGLTNYWGYNPIAFFAPEPRYAAQEAVTEFKTMVRELHRAGLEVILDVVYNHTAESGFDGPMLSFKGFDNAGYYAFEAGAHGPDYTRHANVTGCGNSVNLDHPNSLRLVLDALRYWVTEMQVDGFRFDLAVTLAREAGEFDPMGAFFKAMMADPVLARVKLIAEPWDIGPFGYRLGQFPSQWLEINDRYRDTVRAFWRGDAGKMGDFATRLVGSRDLFPKNWRSPHTSVNYLCYHDGFTLEDLVSYNQRHNQANGEDNRDGHGNNLSNNHGVEGPTLDPRVNNLRQQQKRNLIATLLLSQGTPHFLAGDEMGRSQLGNNNAYCQDNQISWVNWQWRPEDERLLAFTQQMLALRAESTVFSNLQLSDDSWNGAPNSCHQVNWYHPDGHQLTDQDWHAPMGQAFAMDIGMIGCGGERWYVLFNASDYDIQFRLPPPGEGLEWIQTIDTATNDGLPFLPDDIKRQVAVGRAHSLKLLERVALSAVALAEEGVVATPDVAVVLPSGSQFPLAG
>NZ_CP038515.1|WP_102987970.1|774291_774684_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSGNIPNPEQWRRQLSAEQYHVCWEKGTERPYSGALLHNRKSGDYLCVCCKQVLFHSDAKFDSGCGWPSFDRAIEGTVTYTEDGSHGMKRVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLDFDPEP
>NZ_CP038515.1|WP_171281575.1|773059_774211_+|chromate-efflux-transporter
MGQVFIQFLWLGCVSFGGPAAHIGYFQRTFVERLGWLTQAEFAQLLALCQLLPGPASSQLGFAIGRQRAGLGGALAAFAGFTLPSFLLLLAAAIGLGQLGNNVWLDAALHGLKLLALVVVADAVLTMSRQFCKTTRNQGIMVATAAALWWQPGLLTQLVMLAGAVLLCARVGAPQTPDPQPSPAQSIPVHQPHWPTLLLFALLFVGLPLLGGPVGQLVADFYRAGSLVFGGGHVVLPLLAESVGHSLNQQQFLTGYSLAQLVPGPMFTLATYLGAQLLPASPVGGALLAILALFLPGFLLLWAMGPCWQSWLARPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPTDLALAAIGFYLLRGLKLPILALATLLVVATLLLA
>NZ_CP038515.1|WP_171281574.1|772378_772822_+|NUDIX-domain-containing-protein
MSTPYPRVGVGVILTNRQGQVLLGKRKGSHAPYWSIAGGHLELGETFESAAIREVAEETGFQISNPSVIAVTNNLETWRESGLHYVSVTLLAEVEGEPQLLEPEKCEGWIWCDPRNLPEPHFDASRQSIACWLANRCYLPTSSQPAP
>NZ_CP038515.1|WP_005304908.1|789593_790118_-|peptidoglycan-associated-lipoprotein-Pal
MQLNKLLKGLAIALPLFTLAACSSSSDSDAAGAESGMTDGMGGVQTGGANGMLSPEEQMRQKFEALQRDNVIYFPFDGYDIQGQYADLLDAHASYLRERPSVKVLIEGHADERGTPEYNIALGERRAKAVAKYLQTLGVQAEQLSIVSYGEEKPLDMSHTEDAFAKNRRAVLVY
>NZ_CP038515.1|WP_171281583.1|790167_791493_-|Tol-Pal-system-protein-TolB
MIRKVFFALVGCLLLGQSAQAALDIVITGGIDSARPIAVAPFKWEGNGQLPQDIAEVVSNDLMRSGKFKPLARGQMPQMPSTSGEINFAPWASQGVEAVVVGSIAAVGDGTYKINFELVDVLKGQLAKAQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRIADYDGYNEKTLLRSREPLMSPAWSPDGSKLAYVSFENQKSEIYVQDIYTQQRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLTRVTTSRVIDTEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASITPDGKIMVMVTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDGRFKAVLPTSSGEIRAPAWSPFLN
>NZ_CP038515.1|WP_011707364.1|791587_792751_-|cell-envelope-integrity-protein-TolA
MDVKRGISGYLIASLLLHLIIGIILFVGLDFSKPKRPESKGQIVNAVMLDENFLNEQAKQIQQQKSQPKPQKVEKEKDKEDTDIAKRELAQQQERLRIAETKRKEAEEATRKAEAEKQKKVAEQKQAEEKAQKAEEARKLEEQKAKKVEAERKAAEEESKALALKKKKEQEKKEAEEKQAKADAAKKAEAEKKAKQEAEKKAKAEADKKAKAEAEKKAKAEADKKAKEAKEEAAKKAKADAEKKAKAEADKQAKIAAERKRKAAEEAKLQKEMEDMMQQQLAAEANARSQAASAAAQGEVDKYAALIKATVERYMILDPTMRGKTCTIGVRLASTGFVISVDNGQGDPAVCRSGKAAVLKANQLPVPKDPAAFEMLKEFNLKLEPSI
>NZ_CP038515.1|WP_011707365.1|792756_793203_-|protein-TolR
MQTYQRIRRKKVAEINVVPYIDVMLVLLIIFMAVTPVITQGVKVDLPQAESEQLPEDAKPPFIVSVNTEGEYVIKAGEADDEPVPAGTPEAMQQYITEKAMGYLAINQNAPVVVAGDKSVRYEEVILLMVALKKAGVPQVGLMTDPVN
>NZ_CP038515.1|WP_011707366.1|793202_793892_-|protein-TolQ
MHAEISFIGLFWQASLLVKLVMMTLMGMSVVSWALIIQRSKAIKAANLASEQFEDRFWSGVDLNRLYQESSSRRDDIEGMEDIFYSGFKEYARLLKAGARGQDAVMDGTYRAMRVSLSRAVDELESNLPVLATIGSISPYIGLFGTVWGIMNAFIALGQVQQATLQMVAPGIAEALIATAMGLFAAIPAVIFYNRFSNKVERLENAYANFMDEFTTILNRQIAQQQGDQ
>NZ_CP038515.1|WP_171281584.1|793881_794289_-|tol-pal-system-associated-acyl-CoA-thioesterase
MGEVSEFPVRVYYEDTDAGGIVYNANYLKFMERARTEFLRCGGIEQDVMLRDGVAFVVSRTEIDFRSAARFNELLTVLTQVTEVKRASMRFSQRILAADGRLITQAMVQIACVSHPHMKPVAIPENVKGVLLSAR
>NZ_CP038515.1|WP_016351959.1|794394_794640_-|cyd-operon-YbgE-family-protein
MLLAAALLAVAILQAPNLVAANTSEHGLWLAPWLMWAVCCGVMHGLGFHPRSLIGRVLFCPWLAWPSLLYGLWLTQGYFLS
>NZ_CP038515.1|WP_005304933.1|794692_794809_-|cytochrome-bd-I-oxidase-subunit-CydX
MWYFTWILGLLLACAFGIINALWLEHTENMDRQIDENK
>NZ_CP038515.1|WP_011707369.1|794823_795960_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MFDYEMLRLVWWVLVGVLLIGFAITDGFDMGVGALLPFVGKKDVERRVMLNTMGPHWEGNQVWLVTAGGALFAAWPMVYAAAFSGFYIAMILTLMALFFRPVGFKYRSLREDAKWRSNWDWALFVGSAVPPIVFGVAFGNLLQGVPFDFNQFMMLTYHGNFFGLLNPFGLLAGLVSLFMLVTQGATWLMMKTDGEVLARSRTAAMICSLLTLVLFGLAGFWVSGMEGYVVVKAAATDAVSNPMNKEVVRQAGAWMNNYSLYPWMVAAPVLGLAMSLLTALFAKLNKGWLAFTTSSLAVAGVILTAGFSMFPFVMPSSLEPSLSLTMWDATASFNTLKVMTVAAAIFVPIVLGYTLWTYIKMFGRVTSKHIEDNQQSLY
>NZ_CP038515.1|WP_011707370.1|795972_797529_-|cytochrome-ubiquinol-oxidase-subunit-I
MIAEHVVDLSRFQFAATALYHFLFVPLTLGMAFILAIMESVYVMTNNPVYRDMTKFWGKLFGINFALGVTTGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRLSKRQHLAATWLMALGTNLSALWILVANGWMQNPVGAEFNFESMRMEMVSFAELVFNPVAQVKFVHTVAAGYTTGAMFVLGISSYYLLKNRDVAFARRSFAIAAAFGMASILSVLILGDESGYETGEVQKVKLAAIEAEWNTEPAPASFTLFGIPNQEEMRTDYAIKIPYALGIIATRSLDGQVTGLKDLKSEHELRVRNGMTAYDLLTKLQSGDKSDDTRARFDEVKQDLGYGLLLKRYTNNVTDATDEQIKAAVDDSIPQVAPLFFAFRIMVACGMLMLLLIGLAFYDSTRHKIGERKWLLKALLYGIPLPWIAIECGWFVAEYGRQPWTIAEVLPTSVSASNVPASEIWFSLIGICLFYTVLLIIEMYLMFKYARLGPSSLKTGKYHFEQSKA

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Crispr_ID: NZ_CP038515_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_5

849199-849346

Orphan

Consensus_repeat	Method
CAGCAGGAGCGATGGCCGCCTTTTGTCAGCAGCGCCACCGCCCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_5

>merge|NZ_CP038515|5|849199-849346|CRISPRCasFinder
CAGCAGGAGCGATGGCCGCCTTTTGTCAGCAGCGCCACCGCCCTTCAGGCCGCTACTGCTTGCGGCTCAGGATGTAGAAGGAGATACCGCCGAACAGCAGTGCAGCAGGAGCGATGGCCGCCTTTTGTCAGCAGCGCAACCGCCCTTC

>NZ_CP038515|5|5|849199-849346|CRISPRCasFinder
CAGCAGGAGCGATGGCCGCCTTTTGTCAGCAGCGCCACCGCCCTTC	AGGCCGCTACTGCTTGCGGCTCAGGATGTAGAAGGAGATACCGCCGAACAGCAGTG
CAGCAGGAGCGATGGCCGCCTTTTGTCAGCAGCGCAACCGCCCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_005305164.1\|861264_861453_-\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NZ_CP038515.1\|WP_011707414.1\|841482_842757_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP038515.1\|WP_171281600.1\|844385_844568_-\|DUF5363-family-protein	unknown	unknown	gnl\|CDD\|375128
NZ_CP038515.1\|WP_171281599.1\|843799_844417_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP038515.1\|WP_171281603.1\|854041_856894_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP038515.1\|WP_011707413.1\|840023_840797_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NZ_CP038515.1\|WP_029304803.1\|848567_849089_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP038515.1\|WP_011707423.1\|853520_853976_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|377329
NZ_CP038515.1\|WP_029302168.1\|857080_858373_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP038515.1\|WP_171281601.1\|844774_846127_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP038515.1\|WP_011707422.1\|851849_853358_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP038515.1\|WP_016352045.1\|858391_859057_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP038515.1\|WP_171281602.1\|846448_847885_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|182630
NZ_CP038515.1\|WP_171281597.1\|838582_839914_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP038515.1\|WP_011707427.1\|859196_860024_+\|D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|236952
NZ_CP038515.1\|WP_011707420.1\|849352_850423_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP038515.1\|WP_171281598.1\|842982_843759_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NZ_CP038515.1\|WP_065475552.1\|850564_851677_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_CP038515.1\|WP_005305103.1\|841188_841359_-\|DUF1427-family-protein	unknown	unknown	gnl\|CDD\|274620
NZ_CP038515.1\|WP_171281604.1\|861546_862794_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_005305164.1\|861264_861453_-\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	1.40288e-34
NZ_CP038515.1\|WP_011707414.1\|841482_842757_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	0
NZ_CP038515.1\|WP_171281600.1\|844385_844568_-\|DUF5363-family-protein	gnl\|CDD\|375128	pfam17320, DUF5363, Family of unknown function (DUF5363). This is a family of unknown function found in Gammaproteobacteri.	0.00304529
NZ_CP038515.1\|WP_171281599.1\|843799_844417_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	2.96078e-09
NZ_CP038515.1\|WP_171281603.1\|854041_856894_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP038515.1\|WP_011707413.1\|840023_840797_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	2.08358e-178
NZ_CP038515.1\|WP_029304803.1\|848567_849089_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.59605e-13
NZ_CP038515.1\|WP_011707423.1\|853520_853976_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|377329	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.	2.67098e-45
NZ_CP038515.1\|WP_029302168.1\|857080_858373_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.18143e-125
NZ_CP038515.1\|WP_171281601.1\|844774_846127_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.28837e-151
NZ_CP038515.1\|WP_011707422.1\|851849_853358_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP038515.1\|WP_016352045.1\|858391_859057_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.34471e-27
NZ_CP038515.1\|WP_171281602.1\|846448_847885_-\|ammonium-transporter	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	0
NZ_CP038515.1\|WP_171281597.1\|838582_839914_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP038515.1\|WP_011707427.1\|859196_860024_+\|D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|236952	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.	1.24564e-114
NZ_CP038515.1\|WP_011707420.1\|849352_850423_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP038515.1\|WP_171281598.1\|842982_843759_-\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	4.07695e-94
NZ_CP038515.1\|WP_065475552.1\|850564_851677_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	1.77364e-124
NZ_CP038515.1\|WP_005305103.1\|841188_841359_-\|DUF1427-family-protein	gnl\|CDD\|274620	TIGR03510, conserved_hypothetical_protein, XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins. [Unknown function, General].	1.62751e-10
NZ_CP038515.1\|WP_171281604.1\|861546_862794_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0

>NZ_CP038515.1|WP_029304803.1|848567_849089_+|RDD-family-protein
MAKRKSVQPTPTSPATARYPSAGLLRRLGALLYDYLVVISLLIIAGFIGMGVAHLLLATGMATVPEGKDAAWLLTSPIYSAWLAFIICGFYTWFWTRAGQTIGMRAWRLRIQNADGSNIRITQALIRLATAAFGLGNLLCLFNHKSPRAFQDIWSECEVVVLGKQENLEQLNR
>NZ_CP038515.1|WP_171281602.1|846448_847885_-|ammonium-transporter
MLKRLVMTGLLALAALLAAPSWAEEVVAASAEVVQAAAPAVVTINKGDNTWMLLSAALVILMSIPGLALFYGGLVRSKNMLSVLMQVFTLFSLICVLWILYGYSLAFTEGNSVYGSFSKALLKGVTPDSIAATFSKGVGISEFIYVVFQGAFAAITCGLIVGAFAERIKFAAVLLFSVIWFTFAYIPLAHMVWYWAGPDAYTTADAAAAATATAGYLFQHGALDFAGGTVVHINAAVAGLVGAYLVGKRLGYGRDPMTPHSLTMTMIGASLLWFGWFGFNAGSALEANGTAALAFINTWVAPAAAALSWTLAEWVMKGRPSLLGAASGAVSGLVVITPAAGFVGVGGGLVMGLISGVAGLWGVHGLKRLLGADDSLDVFGVHGVCGILGALLTGVFASPDLGGTGVWDYVINQVAEGYSILAQVKIQAIGVGVTILWSGIISVVAYKLVDLLIGLRVKEDAEREGLDVTTHGEKAYSL
>NZ_CP038515.1|WP_171281601.1|844774_846127_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MPLVGHQHQIEILELTDKGDGKGRLFDRPLFVEGLLPGEQALVELTEVKPNYLHGKVTELLQPSADRVADFCPNTECGGCQVRPLAYPAQLKLKQALVESALEQAGLGDTTVRTILGMDSPFAYRNKAQYAVRGCDAGAEIGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHNIAAYDEVNHTGCVRNLMTRKGFKSGELMVVLVTLGEELPFEAELLTALSDLPVTTLVQNINEERTNRILGATNRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQLMPELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFVLDEVQPVDMFPHSMHVEAVARLSLSAKA
>NZ_CP038515.1|WP_171281600.1|844385_844568_-|DUF5363-family-protein
MKGILLRWLARYDGWCEEWGLTPENRRCCVPIRREQDDAPQTEQQGESESLTGNCGSQHQ
>NZ_CP038515.1|WP_171281599.1|843799_844417_+|type-II-secretion-system-protein
MMKRTSHGFTLIELVLVIIVLGILAVTALPRFINLKDDALKSTVATTATSFANAVQLAHAGWAVKAQDQALYNLGSMGQRNLDINRYGWPAGTDEDQGRKGIDESYVAGQGDYISVSNQSDCRLLFQGLLDSSYTVASVDQDPEIQLNADYLSSELPANQVDADGEPHSNCRYTLRDSIGRFPAYPAGLSFDYNSVTGAVTRNFQ
>NZ_CP038515.1|WP_171281598.1|842982_843759_-|TatD-family-hydrolase
MQLIDTHCHLDFPVFDPDRAALLAECRQLGVSEYIIPAVGEENWGRVMALAAEHDGISYALGVHPWYVGGQTPVVLTRLRRLLAERPRGLVAVGECGLDLRSHVPQEGQLEMFEAQIKLAMEHELPLIVHSVRANDTVAKILRRLRPAKGGVIHAFSGSLQQAEAFWQLGFRLGIGGVISFERANKTREAVRDMPLESLLLETDAPDMSLQGQQGAPNTPANLPKIAQLLADLRQQPLAHVASVLRESTLQAFQLGKS
>NZ_CP038515.1|WP_011707414.1|841482_842757_-|NupC/NupG-family-nucleoside-CNT-transporter
MNLIMGLVGMATLVLIAVLFSSNRKAIKIRTVVGAFAIQAGLGAFVLYVPVGRDILVGVSDAVSSVIGYGQNGIEFLFGGLVSNKMFEVFGGGGFIFAFRVLPVIIFFSSLIAVLYYLGIMQWVIKLLGGGLQKVLGTSRTESLSATANIFVGQTEAPLVVRPFISKMTDSELFAVMCGGLASVAGSVLAGYASMGVKMEYLIAASFMAAPGGLLFAKLLVPETETPSYDENNADGELEDKPANVIDAAAAGASAGLQLALNVGAMLLAFIGLIAMINGIFSGVGGWFGYPQLSLELLLGWIFSPLAFLIGVPWSEAIVAGSFIGQKLVVNEFVAYLNFAPYLKDEVLINGVAMSDHTKAIISFALCGFANLSSVAILLGGLGSMAPNRRGTIAKFGLKAVLAGSLSNLMSATIAGFFLALSGM
>NZ_CP038515.1|WP_005305103.1|841188_841359_-|DUF1427-family-protein
MNEVLLAMAAGFIVGLLFSFLKLPIPAPPVLSGVMGIVGVYLGGLAYSWILTRFFS
>NZ_CP038515.1|WP_011707413.1|840023_840797_-|deoxyribose-phosphate-aldolase
MTDLKLAAQRALNLMDLTTLNDDDTDQKVIDLCRKAKSPAGLTAAVCIYPRFIPIARKTLREIGAADVRIATVTNFPHGNDDIEIAVAETRAAVAYGADEVDVVFPYRAFMAGNEQVGFDLVKACKEACGSQALLKVIIETGELKEEALIRRASEISIDAGADFIKTSTGKVPVNATPEAARIMMEVIKAKNPKVGFKPAGGVKDAAVAGQYLAMAEEILGKDWVSARTFRFGASSLLASLLATLGHGDKPANTSGY
>NZ_CP038515.1|WP_171281597.1|838582_839914_-|thymidine-phosphorylase
MFLPQEIIRKKRNGEALSTQEIQFFVQGITNNTIGEGQIAALAMAVYFKDMSMDERVALTCAMRDSGMVLTWDHLNLGGPIVDKHSTGGVGDVVSLMLGPMVAACGGFVPMISGRGLGHTGGTLDKLDAIPGYQTSVDNDRFLKVVKEAGVAIIGQTGDLAPADKRIYAVRDITATVESIAMITGSILSKKLASGLEALVMDVKVGSGAFMPTFEASEELAKSIVAVANGAGCRTSALLTDMNQVLASSAGNAVEVREAVRYLTGEYRNPRIHAVTMALCAEMLISAGLASDDGEARRKLQAVLDNGKAAEIFGRMVTGLGGPSDFMERYDYHLPKAAIVRPVYAANSGFVTAMDTRELGLAVVAMGGGRRAAGDKLDYAVGLTDFIRLGQSVEADKPLALIHAQTEEQFAQAASMVQAAVKIGDTRPEALPEVYRRIGLADL
>NZ_CP038515.1|WP_011707420.1|849352_850423_-|LPS-export-ABC-transporter-permease-LptG
MFGILDRYIGRVIFMSVLLCELTLVGLAALIKYVEQLKSVGEGNYDMLSALYYVLLSMPKEAVLFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMGEYVAPIAKRMADDIKAGALSEGRLTVSAYGVWARDGNNFVNINGVRNDGALTGITLYRFTPERKLIDILQAQEGVFEQHHWLLKQVQVTRFDDPRQIMSETQPQMEWSSELTPKQLGVVSIDPENLPVAGLLDYIGYLDANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIFGPLRSVSMGARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFYILSRKQ
>NZ_CP038515.1|WP_065475552.1|850564_851677_-|LPS-export-ABC-transporter-permease-LptF
MTVIVFRYLFRETLKTQLAVLFVLLLIFVSQQFIQIIGDAADGEVPTRLVSTLLLLNLPNMALLMLPISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMVLALLTAAVAAFNTGWVAPQAKEREYQVIDEFKADPGISFLQAGRFMELDKGRLVAYIQDLNDKGSKLQKIFVLQRSQDGKPPSVVVATEGVVTVDSNGLQWLTLKDGSRYEGHFNTRQFQISEFDEYSLVIRQQEMERSNRKAAAKPTMELLGTQDNQLMAELQWRLSLPLSILVLTFLVVPLARVNPRQGRYAKLLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPMVYLLLIGLPLNLQGTSWWNGVKTLYFKRKSA
>NZ_CP038515.1|WP_011707422.1|851849_853358_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACVVVGVFEPRRLSPVAEQLDKISDGYISSLLRRGDLEGKPGQMLLLHQVPGVLSERVLLVGCGKERELDERQYKQIINKTITTLNETGSMEAVCFLTELHVKGRDTYWKVRQAVETTKAGLYSFDQFKTNKAEPRRPLRKLVFNVPTRRELTIGEKAIAHGLAVAKGVRVCRDVANMPPNVCNPAYLASQARRLADAFDNITTKVIGEQEMAELGMNSYLAVARGSDNEAMMAIIEYKGHPDAKPIVLVGKGLTFDSGGISIKPAEGMDEMKYDMGGAASVLGTMHALAQLQLPINVIGVLAGCENMPGGNAYRPGDILTSMSGQTIEVLNTDAEGRLVLCDALTYVDRFDPETVIDVATLTGACIIALGHHTTGLLANHNPLAHELLNASEQAGDRAWRLPLFDEYQEQLESPFADMANIGGRPAGTITAAAFLSRFTKKYNWAHLDIAGTAWKSGKEKGSTGRPVPLLTQFLLNRSGVVIEEKE
>NZ_CP038515.1|WP_011707423.1|853520_853976_+|DNA-polymerase-III-subunit-chi
MSQVTFYLMSEQDDAQASAVERLACQLVADSWGAGHLYLLCDDEAQALRLDELLWQLPPERFVPHQLQGESGQAPVEIGHQPPRRRYARLINLAKQTPLFAGHFAQVVDFVPTDETQKQQARERYKHYRQAGHALEMRDQPVLAAPDPAQP
>NZ_CP038515.1|WP_171281603.1|854041_856894_+|valine--tRNA-ligase
MEKTFNHNAIEQALYQHWEAQGYFKPHGDTSKDSFCIMIPPPNVTGSLHMGHAFQQTLMDTLIRYNRMQGKNTLWQAGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWQWKEESGGTITRQMRRLGDSVDWERERFTMDEGLSAAVQEVFVRLYEDGLMYRGKRLVNWDPKLNTAISDLEVENREIKGHMWHLRYPLANGAKTAEGQDHLIVATTRPETMLGDTAVAVNPEDPRYKALIGQHILLPLVNRLIPIVADEHADMEKGTGCVKITPAHDFNDNEVGKRHNLPMINIFTLDAHVRAEAEVVDSNGNPSTAYDAALPTEFAGMERFAARKAIVAKLDELGLLAEIKDHVLQQPYGDRGGVPIEPMLTDQWYVRVAPMAKTAIEAVEDGRIQFVPKQYENMYFSWMRDIQDWCVSRQLWWGHRIPAWYDDAGNVYVGRNEDEVRTKHSIPSVTVLRQDEDVLDTWFSSALWTFSTLGWPNNTEALKTFHPTDVLMSGFDIIFFWIARMIMMTMHFIKDENGQPQVPFKTVYITGLIRDEEGQKMSKSKGNVLDPLDMIDGISLEDLLEKRTGNMMQPQMAEKIGKRTAKQFPEGIEAHGTDALRFTLAALASTGRDINWDMKRLDGYNNFCNKLWNASRYVLMNTEDQDCGFAGGEMQFSLADRWIQSQLQVAIRDFRTALDTYRFDIAAGVLYEFIWNQFCDWYLELTKPVLTKGSEAEQRAARHTLVSVLETLLRLAHPIIPFITETIWKSVAPLAGVHADTIMIQAFPEFDAAKVDEAAMADQEWVKEFIVSIRNIRAEMNVAPSVPLNVLLQCDAKDAQRAADNEAFLKSLARLESIRVLADGEVAPLSVKKLIGATELMIPMAGLIDKDAELARLAKEVARLVGECGRIEGKLGNEAFVAKAPEAVIIKEREKLEDYRLQLTKLEAQQAEIAAL
>NZ_CP038515.1|WP_029302168.1|857080_858373_+|HlyC/CorC-family-transporter
MEILILFGLILLNGVFAMSEIAIVTARKARLSKMVSEGSRSAAIALKLSEDPTHFLSAVQIGITSIGLLNGIYGESLLAQPLALWLQEWGMAPKSSSLLATVLVIVVVTYLSIVIGELVPKRLGQLSAERIACLVARPMMWLAALTRPFVWLLSASTKASLRILRVSQDGGANVTQEEIHAMLVEGSEAGIIEDHEHTMLRNVFRLDERSLSSLMVPRSDIRYLDLALPLEVNLQRLVEYRHSFFPVCDGSLSELVGIINVSKVLHAYIKGEPIDLAALTQDGSLLPETLNGLELLNHFRTHSEHMVLVVDEYGELQGLVTQQDLLETLAGDFQQEDGDDNWAFQRTDGSWLLDGLIPLPELKDCLGLVRLPEEEKHHYHTLGGLIMLLLGRVPQTGDLVTLEQWQLEIVDMDGLRIDKVLAMPLLDQPS
>NZ_CP038515.1|WP_016352045.1|858391_859057_+|DedA-family-protein
MEQFYQLAHAFMHQDLVTLSDPKMAFMVCGVLLTFLVLENGFIPTAFLPGDSLLILTGVLIYQDVLSLGVIPLLILATFVGTWLGYMQGRFLGHTQLYHRLLSHVEEKHQQKVYYLLDKYGIVTLITARYIAFVRTAYPYIVGATELPQGRFLIVNLVSSIMWICPLVGFGYFLSHTKLASEYQSQFLSIILCLPIVLLVGGLIALIWRWLSKRKASAPRD
>NZ_CP038515.1|WP_011707427.1|859196_860024_+|D-alanyl-D-alanine-endopeptidase
MRCRVSAMALVYALVGLLGLPAALAAPNPAKLQLQSSSALVMDVGTGKTLYQKNATRVRPIASITKLMTALVVLDARQDLGQTLTIDQNDRDAIKHTYSRVRMGTQVSRRDALHLALMSSENRMASALARHYPGGRPAFVRAMNNKAKQLGMRNSRFYDSTGLSTRNVSTAQDLAKLIAAAYRQPLIREFTQDTSKDMRFRTPAYSLMFNNTNPLVKNPDWDVRLSKTGFTDEAGRCLLMRAKPDNRELAIVLLNSVGKRTPVGDANRIRKWLKS
>NZ_CP038515.1|WP_005305164.1|861264_861453_-|carbon-storage-regulator-CsrA
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKVPGQSGF
>NZ_CP038515.1|WP_171281604.1|861546_862794_-|aspartate-kinase
MALYVQKYGGTSVGTLERIEAVAERVEQTRAQGHDVVVVVSAMSGETNRLLGMAQQLDPDANRREMDVLVSTGEQVTIALLAIALNKRGCPAVSMTGDQVRIHTDSAYGKARITHIDIEQVQAELGAGKVVVIAGFQGRDEHNAITTLGRGGSDTTAVAVAAAIKADECQIFTDVDGVYTTDPRIEPKARRLDTITFEEMLEMASLGAKVLQIRSVEFAGKYRVPLRVLSSFVDGEGTLITYGGERMEAPLVSGIAFNRNEASLTILGVPDRPTVAAQILNPISDANIDVDMIVQNTLGDGTADFTFTVNRDDYRRARALLEETASELGAACVQGNGEIAKVSIVGVGMWNHPGVARTMFKVLGEEGINMQLISTSEIKISVVIDEKYLELAVRALHSAFGLDQEPHEQPLGNNP

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Crispr_ID: NZ_CP038515_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_6

887461-887615

Orphan

Consensus_repeat	Method
TTAACCAGCTTGTGCCGGCGGCTGAACAGCAGACACAAAAAAGGCCGCGGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_6

>merge|NZ_CP038515|6|887461-887615|CRISPRCasFinder
TTAACCAGCTTGTGCCGGCGGCTGAACAGCAGACACAAAAAAGGCCGCGGTATACAGCGGCCAAGGAAGGATCCGGTAACAGGGACTGTCAACGGCAGGTTGATTAACCAGCTTGTGCCGGTGGCTGAACAGCAGACACAAAAAAGGCCGCGGTA

>NZ_CP038515|6|6|887461-887615|CRISPRCasFinder
TTAACCAGCTTGTGCCGGCGGCTGAACAGCAGACACAAAAAAGGCCGCGGTA	TACAGCGGCCAAGGAAGGATCCGGTAACAGGGACTGTCAACGGCAGGTTGA
TTAACCAGCTTGTGCCGGTGGCTGAACAGCAGACACAAAAAAGGCCGCGGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_171281609.1\|880158_881073_-\|zinc-ABC-transporter-substrate-binding-protein-ZnuA	unknown	unknown	gnl\|CDD\|236558
NZ_CP038515.1\|WP_171281613.1\|889895_890276_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_011707446.1\|882823_883741_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP038515.1\|WP_135318943.1\|884700_885282_-\|uracil-DNA-glycosylase-family-protein	unknown	unknown	gnl\|CDD\|381683
NZ_CP038515.1\|WP_011707445.1\|881953_882733_+\|zinc-ABC-transporter-permease-subunit-ZnuB	unknown	unknown	gnl\|CDD\|181938
NZ_CP038515.1\|WP_041216483.1\|886274_887009_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP038515.1\|WP_171281614.1\|890331_892374_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|226685
NZ_CP038515.1\|WP_171281615.1\|893143_893671_+\|redoxin-family-protein	unknown	unknown	gnl\|CDD\|239309
NZ_CP038515.1\|WP_045788971.1\|887912_888119_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_CP038515.1\|WP_077095163.1\|879398_880073_-\|transglutaminase-like-cysteine-peptidase	unknown	unknown	gnl\|CDD\|226198
NZ_CP038515.1\|WP_011707454.1\|888990_889719_-\|1-acylglycerol-3-phosphate-O-acyltransferase	unknown	unknown	gnl\|CDD\|184979
NZ_CP038515.1\|WP_005305278.1\|893951_894236_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NZ_CP038515.1\|WP_139703900.1\|881167_881932_+\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	unknown	unknown	gnl\|CDD\|181939
NZ_CP038515.1\|WP_171281610.1\|885384_886293_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP038515.1\|WP_171281611.1\|887053_887455_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP038515.1\|WP_043127148.1\|892384_893140_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP038515.1\|WP_045788972.1\|887651_887870_-\|envelope-stress-response-protein-PspG	unknown	unknown	gnl\|CDD\|181875
NZ_CP038515.1\|WP_011707447.1\|883832_884690_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP038515.1\|WP_171281616.1\|894259_894802_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171281612.1\|888121_888784_-\|phage-shock-protein-PspA	unknown	unknown	gnl\|CDD\|274372

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_171281609.1\|880158_881073_-\|zinc-ABC-transporter-substrate-binding-protein-ZnuA	gnl\|CDD\|236558	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA.	6.9795e-126
NZ_CP038515.1\|WP_005305278.1\|893951_894236_+\|DnaJ-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	4.28667e-22
NZ_CP038515.1\|WP_011707446.1\|882823_883741_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.86923e-68
NZ_CP038515.1\|WP_135318943.1\|884700_885282_-\|uracil-DNA-glycosylase-family-protein	gnl\|CDD\|381683	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil may arise from mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations; thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other. UDG family 1 is the most efficient uracil-DNA glycosylase (UDG, also known as UNG) and shows a specificity for uracil in DNA. UDG family 2 includes thymine DNA glycosylase which removes uracil and thymine from G:U and G:T mismatches, and mismatch-specific uracil DNA glycosylase (MUG) which in Escherichia coli is highly specific to G:U mismatches but also repairs G:T mismatches at high enzyme concentration. UDG family 3 includes Human SMUG1 which can remove uracil and its oxidized pyrimidine derivatives from, single-stranded DNA and double-stranded DNA with a preference for single-stranded DNA. Pedobacter heparinus SMUG2, which is UDG family 3 SMUG1-like, displays catalytic activities towards DNA containing uracil or hypoxanthine/xanthine. UDG family 4 includes Thermotoga maritima TTUDGA, a robust UDG which like family 1, acts on double-stranded and single-stranded uracil-containing DNA. UDG family 5 (UDGb) includes Thermus thermophilus HB8 TTUDGB which acts on double-stranded uracil-containing DNA; it is a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA except for the C/I base pair, as well as a xanthine DNA glycosylase which acts on both double-stranded and single-stranded xanthine-containing DNA. UDG family 6 hypoxanthine-DNA glycosylase lacks any detectable UDG activity; it excises hypoxanthine. Other UDG families include one represented by Bradyrhizobium diazoefficiens Blr0248 which prefers single-stranded DNA and removes uracil, 5-hydroxymethyl-uracil or xanthine from it.	2.54288e-111
NZ_CP038515.1\|WP_011707445.1\|881953_882733_+\|zinc-ABC-transporter-permease-subunit-ZnuB	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	1.41747e-101
NZ_CP038515.1\|WP_041216483.1\|886274_887009_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.70149e-10
NZ_CP038515.1\|WP_171281614.1\|890331_892374_+\|thioredoxin-family-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	3.54849e-88
NZ_CP038515.1\|WP_171281615.1\|893143_893671_+\|redoxin-family-protein	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	3.20296e-37
NZ_CP038515.1\|WP_045788971.1\|887912_888119_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	3.07367e-09
NZ_CP038515.1\|WP_077095163.1\|879398_880073_-\|transglutaminase-like-cysteine-peptidase	gnl\|CDD\|226198	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General function prediction only].	9.80936e-26
NZ_CP038515.1\|WP_011707454.1\|888990_889719_-\|1-acylglycerol-3-phosphate-O-acyltransferase	gnl\|CDD\|184979	PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional.	3.38926e-87
NZ_CP038515.1\|WP_139703900.1\|881167_881932_+\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	gnl\|CDD\|181939	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.	1.73166e-114
NZ_CP038515.1\|WP_171281610.1\|885384_886293_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	9.1617e-66
NZ_CP038515.1\|WP_171281611.1\|887053_887455_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.13345e-32
NZ_CP038515.1\|WP_043127148.1\|892384_893140_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	2.69814e-50
NZ_CP038515.1\|WP_045788972.1\|887651_887870_-\|envelope-stress-response-protein-PspG	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	1.56201e-10
NZ_CP038515.1\|WP_011707447.1\|883832_884690_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.80807e-10
NZ_CP038515.1\|WP_171281612.1\|888121_888784_-\|phage-shock-protein-PspA	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	3.40087e-84

>NZ_CP038515.1|WP_171281611.1|887053_887455_+|GIY-YIG-nuclease-family-protein
MREPAPGAEPAASPPASHWFIYMVRTASGLLYTGISTDPLRRLRQHQSGKGSRALRGKGPLTLAWQQVVGEKGAALRLEYRLKQQSKAFKEQLITQPERWLACSQSWLADTRTQKRPRYAAAKEGSNNRECQR
>NZ_CP038515.1|WP_041216483.1|886274_887009_-|transporter-substrate-binding-domain-containing-protein
MRAWWWLWCLLSISAHGETLRLYDYHQHPPFMTGEQTGLSRDLVKYLNEKLGGEPRLELWLVNRARLALEMSDPGFDGLVAWVNPAWVGDPQRELYLWTFPIMRDTNELISSVARPVIYRGPDSLKGMTFGGIEGYRYQGIDEAAARGDLVRVDAKKVKTNFSLLVRGRIDVTLVPGSALTFFTHDPAFEGKLFVSPFAQSSYTRHILLPKSRSALHSRLNDIAEQMDRDPKWHAILESYRGRP
>NZ_CP038515.1|WP_171281610.1|885384_886293_+|EamA-family-transporter-RarD
MKNWMGTGSAALSFVLWGMLPLYYQFMPAVNMWELLSHRVLWSAVLLGVLFLLIGYRVPWARLRSEPRQLGLILLAGPVMSISWCMFTWCLTTGQVLATSLAFFMTPLFNIVFAVLFLKEKLTPQKHLAVALALAGLAYMLFSYGQLPWFSLIMGANFALYGLLKKKVHYNAGVSLYLEALVQLPVALLIIGALAVSGASQFVAGDWTERLLLMGSAPATLLPVGLFCYGMMRTRMSTVGLLQYIEPSLAFLLAIFWFGETPDPVKSVGFAFVWAGLLVSLLPLHKLGRHPRRSADAQGLPR
>NZ_CP038515.1|WP_135318943.1|884700_885282_-|uracil-DNA-glycosylase-family-protein
MNRLDSLFEQIRACHLCEAHLPLGPRPVIRGSERARLLIIGQAPGTRVHASGIPWDDPSGDRLRQWLGVDKATFYDESRIAIMPMGLCYPGKGKSGDLPPRPECAPTWHDKVLMLLPNIELTLLIGQYAQAYYLRDAAKGSLTETVRSWADYGPAWLPLPHPSPRNTFWLKKNPWFEQDVIPHLQQRVAPLLG
>NZ_CP038515.1|WP_011707447.1|883832_884690_+|DMT-family-transporter
MNAVGIGILYLVLGNMVAVFSDALVKVLEPDQPVFQFVFFRQLSAAILLAPWLLWSWRRNPPVALKWHLLRAHIWAVGVCLMVIALTRLPLATANALFYAAPLMMVPLAVWLAGEAISRQKVLTAFIGFVGVLIVLRPTEVNWAALAALGVALSMALNNLLIKRIPLQQPIAQTLFFTNVLSMPFIMALAWWEGGDWQWQMWWPAFGSSALIMVYAGLCVVAYRKAEASKIASAEYTGLLMAVAIGVWLFDEQPGLPLLLGCLCIILPLIAMARSKPKPQVEPAL
>NZ_CP038515.1|WP_011707446.1|882823_883741_-|LysR-family-transcriptional-regulator
MKLPPLRAVQYFEVVARLLSFSRAAVELNVSQSAVSHQIRLLEDFLGERLLLRQGRLLSLTAQGEVYFEGISAGLGQIAQSSEQLRGGGEMRIRLAVYSSFAVKWLIPRLAGLRQLYPELDLSLEMVAEDPELSDRVADCFITVSPKGPGYMHDLLYRERLMPVCSRRLWQQVEGEWPAALWQLPLLSIQAIYKEKGEDWRRWADVGGLTIAPEARMHHFSHILLALEAANWDQGVALINDYMLQPEDPGLVRLPLHALETGDNFYFVCKRSRVHEPAISRLRQWLWQEAQASLRPGENEPLRRV
>NZ_CP038515.1|WP_011707445.1|881953_882733_+|zinc-ABC-transporter-permease-subunit-ZnuB
MDSFLLYALAAGLGIALLAGPLGSFVVWRKMAYFGDTLSHACLFGIALGILLQVDLTLAVVVCCLAMAMLLVIMSRNQQVATDTLLGILAHSALSLGLVTLSFMDNVRVDLMAYLFGDLLSVQPMDLLWIYGGGALVLLTLWRLWDPLLSMTISEELARVEGVRVDVLRCVLMLLIGLVIAVAMKFVGALIITSLLIIPAATARRFSRTPEQMAGFAALIGCLAVLGGLLLSWYQDTPAGPSVVVCATSLFILSQFKKA
>NZ_CP038515.1|WP_139703900.1|881167_881932_+|zinc-ABC-transporter-ATP-binding-protein-ZnuC
MTQLVELKEVCLSFDGRSVLDKVSFTLNKGKITTLVGPNGAGKSTLSKLVLGLLTPDSGQIIRSRDLRVGYVPQRLYLDPTLPLTVRRFLQLGKNGRLSIEEALNRVGAEDLLDNRMQKLSGGEMQRVLLARALLVKPELLVLDEPVQGVDINGQIELYALISQLAAEFNCAVLMVSHDLHLVMASTHEVICLNRHVCCHGEPESVARHPEFARLFGRPEQEVLAVYTHHHHCDGEHHHHEPQAPVIRLPSRNQ
>NZ_CP038515.1|WP_171281609.1|880158_881073_-|zinc-ABC-transporter-substrate-binding-protein-ZnuA
MRILALITALLAVSLPVRALEVLTTIKPLGFIAAAITDGVSEPKVLLPTGASPHDFSLRPSDIRSINEADLVVWVGPELEGFMAKPLAKHPHVLTLTRVEGMPLFDYSKQAGHEEHADEAHEGHDHDGHEGHHHEGVDPHIWLGPTQALVIANALSETLSAQDPANAERYRGNLLAFKAKVEAKDKVIAEQMKAVNQKGYFVFHEAYGYWERHYGMSSKGHFTVSPERRPGAKTLVEIRKALEEKKASCIYAEPQFSPAVIESVARNTGAKVLLLDEVGEQVPLGPDGYPRFMQQLADAFAECR
>NZ_CP038515.1|WP_077095163.1|879398_880073_-|transglutaminase-like-cysteine-peptidase
MKWLLVPTCTLALCCASVQASRLSEYIASPELRAKLQEVYGGRAIQRAEAFSRLLTPRAGTTDQQKIELVNNYFNNLTYSDDPRLWGETDYWANPLEFIGARGGDCEDYSISKYYTLMELGVDEKKLRLAYVKAVRYNQFHMVTLYFATPKSDPMVLDNINSRILPGSKRTDLIPVYSFDAKSIWIMKSRREGTLAGSADRLAQWTSMKTRFSSEQLRSPRREL
>NZ_CP038515.1|WP_045788972.1|887651_887870_-|envelope-stress-response-protein-PspG
MLEFIVLMLVLVGMALAGFTVLAMLLVSGVFVLFGALAGMFALIIKLAPWLLVLLLVCWFISSRRKQANTYR
>NZ_CP038515.1|WP_045788971.1|887912_888119_-|PspC-domain-containing-protein
MTPWPKDLAHRKLTGVCAGIANGLGLSRVTVRVVALMALILMPPLALAAYLLAVLIMPPRRELKRWLD
>NZ_CP038515.1|WP_171281612.1|888121_888784_-|phage-shock-protein-PspA
MSVFSRLTDVINANLHSLLDKSEEPEKMLRLMIEEMEQVQVEMRTQAARVIAEQKQLERHQQALQHQILEWSAKAELAIEKGREDLARAALTEKLAEVKKCEQLEQDKARVAEVLAQLTADSERLAAKLTEAREKQKLLTLREQTAHSRLRARAQVDNQRMHELMARFDGFQGRVDQLEAQLEAATLGQNPSLEAQFRELELNDEIERELARLKGQKVEA
>NZ_CP038515.1|WP_011707454.1|888990_889719_-|1-acylglycerol-3-phosphate-O-acyltransferase
MLKLARVLLLGLLLIFWFLFGLLLCLVRPRHPNNVYVFARMYHAVCPLIGLKVRVTVADEVKSVGPAVYVCNHQSNYDIFTVTGAVQPGVVAVGKKSLLWLPFFGLIFWLSGNVLIDRSNRSRAIGTIGQVVERIKNRGTSIWMFPEGTRSKGRGLLPFKAGAFHTAVQAEVPVVPIVCSSYFGQIDLNRWDNGEVLLEVMAPVCSKEHGAAGIRDLSDNCRARMEAKLAELDSQLGHPRAA
>NZ_CP038515.1|WP_171281613.1|889895_890276_+|hypothetical-protein
MIHQQRVAKRFLLLVCLLALNCAAQPLARLALLDHALSCQALPSFVTADDQADKSKPASPQPSSCQLNGKWLSATTLLCLEQLFFAVALLIALLAPLWRYTPPLPPPRAVSPPERRLHLTLCVWRE
>NZ_CP038515.1|WP_171281614.1|890331_892374_+|thioredoxin-family-protein
MSTLFKASLLLGCLLWQSSGLASDTGWLTSPQNDHAKVRLQADRSAPDHTRILLEVALESGWKTYWRSPGEGGIAPQILWDQPVGDFQWHWPTPRPFEVAGLSTQGYQQQVRFPLSLDYPAGQPLKGTLRLSTCSNVCILTDYPFTLAVDGQAPAGFDFAWAQTMSTLPQTLPADTRVELGYQHNQLQLRAERAEGWQEPVLFIDALEGAEFGKPTLEVSGNTLIARVPVSDGWQGDAPDLRGQSLSLLLGSGDEAWQTRATIADPLALPAPGQPLIWLLGAALLGGLILNLMPCVLPVLALKLGTVLQQQESKQRQVRKQFLAASAGIMASFWMLAAMSSLLRASQGAVGWGIQFQSAGFIGFMVAVTLLFCANLLGLFEIRLPSNLSTRLATSGGKGLGGHFLQGSFATLLATPCSAPFLGTAVAFALAAPLGQLWLIFTALGLGMSLPWLLVAALPRLALWLPKPGRWMGRLRILLGLMMLGSSLWLASLLGNHLGSTATGWLMAAMLLALLIGILWRYGMRGFTLALSLSALIGGALLLGGALTAQGSGSVDRITWQPLSEQAIVDALAQRKRVFVDVTADWCVTCKANKYNVLLRDEVQSALSAPDVVALRGDWSRPSDAISAFLRQRGAAAVPFNQIYGPGLPEGEILSPLLDKADLLDVLHQAGLVQADAPHF
>NZ_CP038515.1|WP_043127148.1|892384_893140_+|thioredoxin-domain-containing-protein
MTLRTLKLRTLTLCTALVAGTLCAPLLQAAPFTPEQEARIKELIRETLVANPKILDEAAESWEKQNAAAQEAQLGDFIKGNQDVLFNSATSPRLGAKHPKLTLVLFTDYNCPYCKQFDPQLTKLLKAYPDDLGLVIKLLPFKGQSSAKAAQYSLTLWQQEPARFLALHDKLMSKQGMLTEADINKALAATGNTALKPDAKATEELRNSLRIGTLLGVQGTPATLIGNQLVPGAVPYDELEQLVKAELAKRS
>NZ_CP038515.1|WP_171281615.1|893143_893671_+|redoxin-family-protein
MAEDVVVKPPRWRRWGKEALWLLLMALVISTLLDLWHSPTLPAGAMAAPFTLQDGTITSLAEQSRGKPLLVYYWASWCGVCRFTTPTVEQLWQQGENVLTVALRSGSDDQLRAGMAKKGLAFPTHNDERGALAARWQVGVTPTFLIIKDGKLVSSTIGWSSWLGLKARLLWASLR
>NZ_CP038515.1|WP_005305278.1|893951_894236_+|DnaJ-domain-containing-protein
MNNYFRVLGVKSNASENDIKKAYRRLSNQYHPDKLHGASEEEKEQAALKLHQVKQAYEVLSDPKQRAAFIKDFNNVIVTDPAAAMQEMWDQFYP
>NZ_CP038515.1|WP_171281616.1|894259_894802_+|hypothetical-protein
MQNKWDQARLKALQSDASENIESYRDQDDPKGLEQFTDQMKALLLADMSMLEFMPEYLPLALYGRVQFPPKAKSQWNKWLASGEQPSWDEFKVSVGFNNAVLPLVKAVRAQSEDQLMEACAVLFLLDNPLPRGSHRADDDYELRDDEEEDGEDADADYHGGSDRYGDDDGDQDMYDEVRF

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Crispr_ID: NZ_CP038515_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_7

1256656-1256765

Orphan

Consensus_repeat	Method
TCAGAAGTCACCCTCAACCATCTACTCTTCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_7

>merge|NZ_CP038515|7|1256656-1256765|CRISPRCasFinder
TCAGAAGTCACCCTCAACCATCTACTCTTCCGGACACTCCACCCGCCTTGCGGCCAGAGCGCGGACAAGGGCTCAGAATCAGAAGTCACCCTCAACCATATACTCTTCCG

>NZ_CP038515|7|7|1256656-1256765|CRISPRCasFinder
TCAGAAGTCACCCTCAACCATCTACTCTTCCG	GACACTCCACCCGCCTTGCGGCCAGAGCGCGGACAAGGGCTCAGAA
TCAGAAGTCACCCTCAACCATATACTCTTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_171281735.1\|1258623_1259280_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP038515.1\|WP_024945202.1\|1247287_1248643_+\|Ktr-system-potassium-transporter-B	unknown	unknown	gnl\|CDD\|273349
NZ_CP038515.1\|WP_171281730.1\|1249598_1250132_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|130981
NZ_CP038515.1\|WP_171281729.1\|1248670_1249498_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP038515.1\|WP_171281728.1\|1245472_1246510_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
NZ_CP038515.1\|WP_171281734.1\|1254106_1256587_+\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|273110
NZ_CP038515.1\|WP_011707722.1\|1262631_1263912_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|185070
NZ_CP038515.1\|WP_011707718.1\|1259366_1259699_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225753
NZ_CP038515.1\|WP_171281732.1\|1250621_1252589_-\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP038515.1\|WP_171281733.1\|1252953_1254084_+\|NapC/NirT-family-cytochrome-c	unknown	unknown	gnl\|CDD\|274003
NZ_CP038515.1\|WP_171281731.1\|1250145_1250580_+\|DUF417-family-protein	unknown	unknown	gnl\|CDD\|282127
NZ_CP038515.1\|WP_011707721.1\|1262076_1262559_+\|DUF1097-domain-containing-protein	unknown	unknown	gnl\|CDD\|368942
NZ_CP038515.1\|WP_011707709.1\|1246637_1247291_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP038515.1\|WP_171281738.1\|1263908_1264424_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_005306363.1\|1257236_1258586_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340430
NZ_CP038515.1\|WP_171281736.1\|1260052_1260685_-\|protein-methionine-sulfoxide-reductase-heme-binding-subunit-MsrQ	unknown	unknown	gnl\|CDD\|235452
NZ_CP038515.1\|WP_010635834.1\|1259762_1260008_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP038515.1\|WP_171281737.1\|1260704_1261706_-\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	unknown	unknown	gnl\|CDD\|235431
NZ_CP038515.1\|WP_024945204.1\|1244510_1245476_-\|bifunctional-biotin--[acetyl-CoA-carboxylase]-synthetase/biotin-operon-repressor	unknown	unknown	gnl\|CDD\|237010
NZ_CP038515.1\|WP_011707724.1\|1264432_1265833_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|236846

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_171281735.1\|1258623_1259280_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.78515e-85
NZ_CP038515.1\|WP_024945202.1\|1247287_1248643_+\|Ktr-system-potassium-transporter-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	4.59583e-110
NZ_CP038515.1\|WP_171281730.1\|1249598_1250132_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|130981	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme. This protein family with length of about 200 amino acids. One member, from Myxococcus xanthus, is a selenoprotein, with an otherwise conserved Cys replaced by Sec. This family is drawn narrowly enough to suggest that These proteins contain a domain described by TIGR00778, with a CxxCxxxHxxxxxxxG motif. Some members of that family are known to act as peroxidases or correlate with resistance to oxidative stress.	1.02137e-15
NZ_CP038515.1\|WP_171281729.1\|1248670_1249498_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	4.73233e-28
NZ_CP038515.1\|WP_171281728.1\|1245472_1246510_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	0
NZ_CP038515.1\|WP_171281734.1\|1254106_1256587_+\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|273110	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.	0
NZ_CP038515.1\|WP_011707722.1\|1262631_1263912_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|185070	PRK15115, PRK15115, response regulator GlrR; Provisional.	9.38444e-173
NZ_CP038515.1\|WP_011707718.1\|1259366_1259699_-\|hypothetical-protein	gnl\|CDD\|225753	COG3212, COG3212, Predicted membrane protein [Function unknown].	0.000262841
NZ_CP038515.1\|WP_171281732.1\|1250621_1252589_-\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP038515.1\|WP_171281733.1\|1252953_1254084_+\|NapC/NirT-family-cytochrome-c	gnl\|CDD\|274003	TIGR02162, Cytochrome_c-type_protein_TorC, trimethylamine-N-oxide reductase c-type cytochrome TorC. This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.	5.14634e-130
NZ_CP038515.1\|WP_171281731.1\|1250145_1250580_+\|DUF417-family-protein	gnl\|CDD\|282127	pfam04224, DUF417, Protein of unknown function, DUF417. This family of uncharacterized proteins appears to be restricted to proteobacteria.	1.35802e-27
NZ_CP038515.1\|WP_011707721.1\|1262076_1262559_+\|DUF1097-domain-containing-protein	gnl\|CDD\|368942	pfam06496, DUF1097, Protein of unknown function (DUF1097). This family consists of several bacterial putative membrane proteins.	8.16419e-26
NZ_CP038515.1\|WP_011707709.1\|1246637_1247291_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	3.20808e-47
NZ_CP038515.1\|WP_005306363.1\|1257236_1258586_-\|sensor-histidine-kinase	gnl\|CDD\|340430	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. PhoQ is the histidine kinase (HK) of the PhoP-PhoQ two-component regulatory system (TCS), which responds to the levels of Mg2+ and Ca2+, controls virulence, mediates the adaptation to Mg2+-limiting environments, and regulates numerous cellular activities. Providencia stuartii AarG is a putative sensor kinase which controls the expression of the 2'-N-acetyltransferase and an intrinsic multiple antibiotic resistance (Mar) response in Providencia stuartii. The AarG product is similar to PhoQ in that it is able to restore wild-type levels of resistance to a Salmonella typhimurium phoQ mutant. However, the expression of the 2'-N-acetyltransferase gene and of aarP (a gene encoding a transcriptional activator of 2'-N-acetyltransferase) are not significantly affected by the levels of Mg2+ or Ca2+. Most proteins in this group contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory HAMP sensor domain, and some have an intracellular membrane -interaction PhoQ sensor domain.	1.09068e-35
NZ_CP038515.1\|WP_171281736.1\|1260052_1260685_-\|protein-methionine-sulfoxide-reductase-heme-binding-subunit-MsrQ	gnl\|CDD\|235452	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ.	4.9317e-67
NZ_CP038515.1\|WP_010635834.1\|1259762_1260008_+\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	9.28386e-05
NZ_CP038515.1\|WP_171281737.1\|1260704_1261706_-\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	gnl\|CDD\|235431	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP.	0
NZ_CP038515.1\|WP_024945204.1\|1244510_1245476_-\|bifunctional-biotin--[acetyl-CoA-carboxylase]-synthetase/biotin-operon-repressor	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	1.33237e-172
NZ_CP038515.1\|WP_011707724.1\|1264432_1265833_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	2.05914e-42

>NZ_CP038515.1|WP_171281734.1|1254106_1256587_+|trimethylamine-N-oxide-reductase-TorA
MTFFTDKQTNLSRRSLLKGLGACAALPLLAGVFPKSALAQAISTALEQFPTLVPAQKGILTGAHWGAFEAIVEDGRMVRVQPVADDPAPNDLIDMAPFQVHAKNRIKYPMVRKSWLEQGPGAKPELRGADEWVRVSWEKAIALVAGEIGRVQRDFGPQAIHAGSYGWKSVGMFHNSRTLLHRLMNLAGGFTGYAGDYSAGAAQVIMSHVMGSIEVYEQQTAWPNVIEHAELVVLWGVNAQVTLKNSWNMPDHEGQAGFKALKEKGTRIISIDPVYNETAKLAGAEWIAPNAYTDVAMMLGVAHTLYSEQKHDQAFLDRYTTGFDKFLAYLLGQEDGQPKSAEWASTICGVDAKVIRQLALDMASKRTMIMAGWGMQRQQHGEQPNWMLVTLAAMLGQIGLPGGGYGFSYHYSSGGSPTAKGGILAGISAGNAPKNGPAPIPVARIADCLANPGKTIDFNGRKVTYPDIKLVYVAGGNPFHQHQDTNNLVKAWRKPQTVIVHEPYWTATAKHADIVLPATTSYERNDLEMGGDYSQRYVFPMHQCVPPQFEARNDFDIFRDVAAKLGLQEQYTEGKDEMLWLKQMYDGMAAQARGARVALPPFNMFWESNNYIRFPVPEANRQWIRHADFRENPLLNPLGTPSGKIEIFSSTVAGMGYADCAGHPKWYEPKEWIKSKEATRYPLSLNTSHPTQRLHSQLDNTPLRDKFAIADREAILIHPDDAKARGIQDGDLVRAFNDRGQILVGALLSTDIRPGVVRVCEGAWFDPAKPGEAGSLCKNGNVNCLTFDEGTSSLAQGNCGHMAQLQIEKYQGPAPVNTAHAVPANA
>NZ_CP038515.1|WP_171281733.1|1252953_1254084_+|NapC/NirT-family-cytochrome-c
MLGKLLRKTWFWLLLLGALLGVAALGVTVTVMHKTSSTEFCVSCHSMQTPLAEYQGSVHFQNVKGIRAECADCHIPGDPTSYLWTKIRAVKDIYHEAIGTLDTPEKYEAHKLRMAQSVWDELKANDSATCRSCHSYAAMDILAQRPNARAEHPVAIKEGQTCIDCHRGVAHIMPDMSGLAAAGASELAQAAAQTPASVTTRYAIATTPLYLDAGAKTDEGTLMPSTKVEVLANDNGRAQVRIDGWQQDGVSEVFYAAPGKRILSTLLGDKAKGQLTTGKSETDSATNLTWHQVSLTAWVDQSQLIGDQGKLWQYASTLMSNNCTGCHGLTALDHFNANQWIGVIKGMESRTSLTPEQARMLTQYVQKHASDMNAAH
>NZ_CP038515.1|WP_171281732.1|1250621_1252589_-|DNA-topoisomerase-III
MRLFIAEKPSLGRAIADVLPKPHKKGDGFIETAQGDVVTWCIGHLLEQAEPDAYDAAYKQWRMESLPIVPAQWQLVAKPKTKTQLTVIKRLIKQADCVVNAGDPDREGQLLVDEVIDFLGYGKTRPVLRCLISDLNPPAVRRALDKLRDNKEFVPLAVSALARSRADWLYGINMTRAYTLLGRKGGCSELLSVGRVQTPLLGLVVRRDLEIEAFVPKPFFEVLAHLQTEGNERFSAKWLPSEACLPWQDEEGRVLNRALAAKVVERIQGQPALVEEVEEQARKQAAPLPYNLSSLQIDAAKRFGMDAKRVLDVCQGLYERHKLITYPRSDSRHLPSDHFNRAGQVREAIASTAPALAKAVSEADGKIRSKAWNDSKVDAHHAIIPTEKQGNPATLGADEAKLYGLIARQYLLQFYPPFEYNDSKVLLRIAGGLFQAKARRILKAGWKALLGVEEDDEEEAGSLPALRKGEQLLCERGELQEKMTQPPKSFTDATLLAAMTGIARYVQDPEIRKTLRETDGLGTEATRAGIIDLLFKRRFLVRQGKSIKATPTGRALIQALPATATTPDMTALWEQHLGRIAERQTSYQQFMGPLTEQLNGLIDGARQDSGASFSALPKAAPGADKRRFTKRKRSTAAGGTSGTAKRGSKQPAKAA
>NZ_CP038515.1|WP_171281731.1|1250145_1250580_+|DUF417-family-protein
MERHDRGFLIALAGVVLTLLWIGVFKFTPTEAAAIRPLVASHPLMSWLYAVLSEQAVSNLIGLVEILIAGGLIAGLWRPRLGYWSGLGAILTFLVTLSFLLTLPGVWKLVDGVPVTEFFIFKDLVLLGVAWHYLNLSRARLADA
>NZ_CP038515.1|WP_171281730.1|1249598_1250132_+|carboxymuconolactone-decarboxylase-family-protein
MSRIHPVSQPKPAAAPTFAALKSSLGKVPNLYATLAHSPAVLNGLLGFADVLGKGRLSARQRELLALAIGQANACQYCLSAHTLLAGRAGFDDDAIRAARLAQAADPLDHALLQLAVALVTQRGVISDQQLAAARAAGVDDELVVEVLGQVVINTLTNYGNHLAATDIDFPPVTLTP
>NZ_CP038515.1|WP_171281729.1|1248670_1249498_-|helix-turn-helix-transcriptional-regulator
MDPLSILLAHAAPRANLFFAGNLCQHSHSHDYPAGGHLHLLRRGELLLREEGGEPLLLTEPTLILFPRGRGHRLEPRQLAGCDLVCASVSFGPTGDSPLQLALPDTLVLPLQTIPAMEPVLTLLFEEAFADRYGQPPILSRLLEVLLILLLRHLVEQGHCRQGMLAALSDPRLARAVTAMHQRGDEPWTVETLAREAGMSRARFAAHFQALTGQAPLGYLTRWRMMLASQQLLAGESITQVALGAGYSGGTAFGRAFEREFGMSPGRWLKTRQRE
>NZ_CP038515.1|WP_024945202.1|1247287_1248643_+|Ktr-system-potassium-transporter-B
MTRWRSNYAFALHRDDESRWSEAKLILGSFLIILLVGTLFLVQPSSHNGEVSFINALFTATSAISVTGLGVVDTGTAFTLQGQIFLLMLMEIGGLGQMTMTLLLIAMFSKRVGLRQQVLAKEALGQEGSVNIIQLVKRIVLFAFIAQLIGTGLMAIRWVPELGWERGLYVSFFHAVSAFNNAGFSLFANNLIDYRDDPIISLTIAALIILGGIGFTVIVDLVRNRRWRKLKLHSKLMLIMTPGLLLLGTLMFWLLEHNNPGTLGKASFGGQWLAAFFQSTSARTAGFNSIDIGQMVPASLLFMMMLMFVGAGATSTGGGIKVTTFAVVLLATKAFLTKRPHVTAFGRTLSPQIVTRSLAIIIVSTMVLMLAMFLLMLTEQQSFDKIMFETISAFATVGLSTGITAGLSEPGKLILVLVMICGRLGPLTLAFMLARPSETRIKYPEEAVYTG
>NZ_CP038515.1|WP_011707709.1|1246637_1247291_+|TrkA-family-potassium-uptake-protein
MNNQFAVIGLGLFGSALCEELQRQDAEVLAIDIDESKTRQIATLCNHVIVADATDEATVAELGLADFDIVFVAIGDNLETSILTTLVLKEAGVKKVWVKARDKFHAKILQKVGADKVINPEWDMGRRVAQSMLDNRLFDYLELGHDMVLTEFVIGLPQNGRTLADLHLLQQTELQLLAIKRGQVLHNVLTGKMELQLGDILILAGNKHAIDHWLETL
>NZ_CP038515.1|WP_171281728.1|1245472_1246510_-|UDP-N-acetylmuramate-dehydrogenase
MKLTPYASLLTLNTLALDAHCRWLAEVERIDDLPQLVANPELADLPRLVLGGGSNVLFCDDFAGVVVLNRLKGITLHDEGEHWLLHVAAGENWHELVCHSLQQGWFGLENLALIPGTVGAAPVQNIGAYGVELASVCAYVEAFNWQSGQLERIEAATCGFGYRDSIFKHACQDSHFITAVGLRLAKAWQPVAGYGPLAALGEQPTAQAIFDTVCATRMAKLPDPAVLGNAGSFFKNPVVTTAQADLLKQQFPHLPCYPAADGQAKLAAGWLIDQCGLKGFAIGRAAVHQEQALVLVNLGGANAMELIALAAHVRDSVEQKFGVLLEHEVRFMGRSGETWLDEVLS
>NZ_CP038515.1|WP_024945204.1|1244510_1245476_-|bifunctional-biotin--[acetyl-CoA-carboxylase]-synthetase/biotin-operon-repressor
MTLTPIRQTLITLLSDGQFHSGEQLGEQLGISRAAVSKHMAALKELGLDLFSLTGKGYRLAVPMALYDEAQLQALAPMAPVHCFPVIDSTNQYLLERVNQLSSGESCLAECQTAGRGRRGKPWVSPFGCQLILSMYWRLEQGMAAAMGLSLAVGVAVVQALESLGYPGVELKWPNDLYYQGRKLAGILVEMSGSAGASCHLVIGVGLNLAMPSREGERIDQAWSELRHIQPELVDRNLLAGRVLDHLQQAMLTFEQSGLASFVADWNRLDHFAGRPVRLLMGEQEIRGVARGIDDRGALRLETAEGIKFYLGGEISLRRGD
>NZ_CP038515.1|WP_005306363.1|1257236_1258586_-|sensor-histidine-kinase
MRLVRTLRGRLVVIAMVWCGLFLFATGFSLQTMMRNYWQEAEADGLRLQLYDLLSRLEIQPDGLPVVTEPMADPRFRQPYSGYYWQLELGESVVSRSRSLWDVHLDVHGLKSAFGDPDLFVGKGPNKEPLLIMTRTVLLPGSDRVFTLVMAKDSSALTQTLKKTRISLFLGLGFAATGLVLGFMFQIVYGLRPLHLLRRELSRVHQGHQEGFRLRYPLEIQPLVEDINRLLHHYGELLQRARSHTGNLAHALKTPLSIMRNQVAQLPPEDQAALGEQLDQIQRHIDYHLGKARVTGAAKILGVSTPVRARVEYICRAFSRLYPGREVDLQVPATLAVGVEEQDFDEMVGNLLENAFKWSAGRLRISSAELGGWITLRIEDDGPGMSEDQIAKAVLRGVRLDEKVPGSGLGLNIVSDLAEAYRGSLIMGRAELGGLAASLSLPKVARVES
>NZ_CP038515.1|WP_171281735.1|1258623_1259280_-|response-regulator-transcription-factor
MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGLSVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAAGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHKGKVVSRSELIDHIYAQDFDRDSNTVEVFIGRIRKKTHSDLIETVRGLGYRINE
>NZ_CP038515.1|WP_011707718.1|1259366_1259699_-|hypothetical-protein
MNRALSLLGLLLPALAQAATPNEALLQQAVSEGRVRPFHEVMEVASRLPVRVLRVDLGEEDGIWLYELKLIDSENSVIKVGYRADNLEMVWLKGHHLERLFEPRPPPEEE
>NZ_CP038515.1|WP_010635834.1|1259762_1260008_+|PepSY-domain-containing-protein
MNMIRRSFLLILCLFSTLGWAAESRLDMAGLVKLLVAQGYHDIREVELEGDKFEVETLDAQGQRVRLLVDAHTGDIKKEAD
>NZ_CP038515.1|WP_171281736.1|1260052_1260685_-|protein-methionine-sulfoxide-reductase-heme-binding-subunit-MsrQ
MTLRLTARHITLLRALVHLASLGFLLWLLVAVPGGLLGGDPVQGLTHYLGKGALNLLLLTLLVSPLAKRWRQGQLIKLRRPLGLWCAAWAGLHFMVWLGLDLQFDWGLIGGELVKRSYIVVGMVALLLLLALSLTSIPALLRRMGPAWQKLHNWIYAVALLVPVHYWWSLKSGWQEPLIYLLLACALLVPRRDKLLHPWRRLRPQKLREA
>NZ_CP038515.1|WP_171281737.1|1260704_1261706_-|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP
MLLKRRSAHHLTEQDVTPEAVYQDRRLILKGLGLGAATLAFPTQAGVLDLFSGDKPAPVATRALNIHAAARPEGLILTPEEKATTHNNFYELGTDKGDPARNGHYLKPEPWTLKVEGEVAKPFTLDVWDLINKSTLEERIYRLRCVEAWSMVLPWSGIALADLIRRAEPTSRAKFVAFETLYDPEQLPGQASRSLGGGIDYPYVEGLRLDEAMHPLSFLAMGLYGKALPAQNGAPIRLVVPWKYGFKSIKSIVSIRLVEEMPPTTWNLLAPNEYGFYANVNPAVDHPRWSQASERFIGEGGIFGAKRQPTLPFNGYADEVASLYQGMDLHKWY
>NZ_CP038515.1|WP_011707721.1|1262076_1262559_+|DUF1097-domain-containing-protein
MSPLIAIAITTGILSAVWGWVAVTLGLISWVGFLGCTSYFASSGGYKALLQTLLCNASGMLWALLLIHGDAWWGAGVAGYLMTGVVATLMCVQAKQQWLGYIPGTFAGCCATFGAAGEWRLILPSLVIGALFGYLMKASGLWLSHKTQKTQATAGVTDPA
>NZ_CP038515.1|WP_011707722.1|1262631_1263912_-|sigma-54-interacting-transcriptional-regulator
MSRILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRADLVLSDLRMAGMDGLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSLTRPKQRQDWQSLILTRNPQMEQLLIQAGSIAAMEVPVLIMGPSGSGKGVMTQALHQASSRRDKPLHVINCAALPWAALDLQLFGEDGQSGLFEQAKGATLFLDEIGDLSESLQAKLLQVLQEYGQGTPEVRVISSSHQDLVAAMEEGRFREDLFYRLNVANITLPPLSARSEDIPLLARQALDDYRSRHGDCAALGFSPEALALLAAAGWPGNVRQLCSVVEQLASLCCSPVIGAAMVESALSGGSGGIPSFNEARAEFEKEYLIRLLRTTEGNVTLAANMAGRNRTDFYKLLNRHGIEAANFKSKG
>NZ_CP038515.1|WP_171281738.1|1263908_1264424_-|hypothetical-protein
MKQCVVPVLMMSLLTGCSLLPARDPAASPDLALAKRMEFANKEMQVRLQYSDWLLASHALQRAQERQRLKGATDIESRVSLAMVNTHPSESVASRRAGLDKLKSLLPELGLDAQAFLRSWIALGEELLARDSRRDDQSQEVQRLRRQIEQLSAIDDQLNQRKLNGNGEALK
>NZ_CP038515.1|WP_011707724.1|1264432_1265833_-|HAMP-domain-containing-histidine-kinase
MTKVRPRSLLQVVLMGFVLVLMPLGGMIWHDSQSLEHLSQLTSDELERAVRDTRRATLLTTQAIDLERTLRRYAVLGDERILASYQQQLASYRSLLAAHQSSIPDAEAYTGLEQALAWLDSLQDLARAKAESNSPKFDEFNQVNQQLEIITRSQVDEHVSRVRATIAALMTEIWWVSGFVAVLSLLLVLLFTYLIIHPVRQIESRILSLGAGVEPDKRPVDGPAELVLLGERIVWLHDKLKELEQQKYQFLRHVSHELKTPLAVLREGADLLSEQLVGPLTPDQQEICQMLEENSRRLQTLIERLLDFNRLSQQEVFTLTPVALAPLLSELSAEYRLALESKQISVHLPTDPITLQAEPYRLRLILDNLFSNAVSYGASGGQIWIRAGQDGNGSWLEVANEGPAIPLAERERIFEPFEQGSIVRQGLLKGSGMGLSIARESAMSLGGELVLVEDEQADVCFRLTLK

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Crispr_ID: NZ_CP038515_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_8

1269361-1269482

Orphan

Consensus_repeat	Method
CTCCCGCGTCCCTCAGCCCTTAAGGCTTCACATCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_8

>merge|NZ_CP038515|8|1269361-1269482|CRISPRCasFinder
CTCCCGCGTCCCTCAGCCCTTAAGGCTTCACATCCCGTAAGATCGGGCACTGCAATGAAATCAGGGTTTCGCATGTGAAATGGATCTCCCGCGTCCCTCAGTCCTTAAGGCTTCACATCCCG

>NZ_CP038515|8|8|1269361-1269482|CRISPRCasFinder
CTCCCGCGTCCCTCAGCCCTTAAGGCTTCACATCCCG	TAAGATCGGGCACTGCAATGAAATCAGGGTTTCGCATGTGAAATGGAT
CTCCCGCGTCCCTCAGTCCTTAAGGCTTCACATCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_171281739.1\|1266672_1267377_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180586
NZ_CP038515.1\|WP_024945187.1\|1272166_1274740_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP038515.1\|WP_171281746.1\|1282377_1283130_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP038515.1\|WP_171281743.1\|1274911_1275649_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP038515.1\|WP_016352287.1\|1270079_1271072_+\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|235456
NZ_CP038515.1\|WP_049045902.1\|1280758_1282066_-\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP038515.1\|WP_171281742.1\|1271281_1272106_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293799
NZ_CP038515.1\|WP_017409791.1\|1265931_1266024_-\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171281741.1\|1267898_1268435_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227700
NZ_CP038515.1\|WP_017409782.1\|1276865_1277621_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP038515.1\|WP_011707725.1\|1266153_1266669_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|376515
NZ_CP038515.1\|WP_011707721.1\|1262076_1262559_+\|DUF1097-domain-containing-protein	unknown	unknown	gnl\|CDD\|368942
NZ_CP038515.1\|WP_171281744.1\|1277769_1279098_-\|CoA-disulfide-reductase	unknown	unknown	gnl\|CDD\|181958
NZ_CP038515.1\|WP_011707722.1\|1262631_1263912_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|185070
NZ_CP038515.1\|WP_171281738.1\|1263908_1264424_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_124251372.1\|1268520_1269285_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP038515.1\|WP_171281745.1\|1279192_1280593_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP038515.1\|WP_011707736.1\|1275767_1276748_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP038515.1\|WP_171281740.1\|1267497_1267902_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341392
NZ_CP038515.1\|WP_011707724.1\|1264432_1265833_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|236846

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_171281739.1\|1266672_1267377_-\|SDR-family-oxidoreductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	9.88257e-72
NZ_CP038515.1\|WP_024945187.1\|1272166_1274740_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP038515.1\|WP_171281746.1\|1282377_1283130_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.21589e-22
NZ_CP038515.1\|WP_171281743.1\|1274911_1275649_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	5.5674e-122
NZ_CP038515.1\|WP_016352287.1\|1270079_1271072_+\|aspartate--ammonia-ligase	gnl\|CDD\|235456	PRK05425, PRK05425, asparagine synthetase AsnA; Provisional.	0
NZ_CP038515.1\|WP_049045902.1\|1280758_1282066_-\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	9.37416e-137
NZ_CP038515.1\|WP_171281742.1\|1271281_1272106_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293799	cd07713, DHPS-like_MBL-fold, Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Methanocaldococcus jannaschii 7,8-dihydropterin-6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase (EC 2.5.1.15), a folate biosynthetic enzyme also known as dihydropteroate synthase and 7,8 dihydropteroate synthase. Thermoanaerobacter tengcongensis Tflp is a ferredoxin-like member. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.48598e-81
NZ_CP038515.1\|WP_171281741.1\|1267898_1268435_-\|hypothetical-protein	gnl\|CDD\|227700	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown].	3.131e-28
NZ_CP038515.1\|WP_017409782.1\|1276865_1277621_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	6.5087e-100
NZ_CP038515.1\|WP_011707725.1\|1266153_1266669_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|376515	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).	4.90755e-22
NZ_CP038515.1\|WP_011707721.1\|1262076_1262559_+\|DUF1097-domain-containing-protein	gnl\|CDD\|368942	pfam06496, DUF1097, Protein of unknown function (DUF1097). This family consists of several bacterial putative membrane proteins.	8.16419e-26
NZ_CP038515.1\|WP_171281744.1\|1277769_1279098_-\|CoA-disulfide-reductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	0
NZ_CP038515.1\|WP_011707722.1\|1262631_1263912_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|185070	PRK15115, PRK15115, response regulator GlrR; Provisional.	9.38444e-173
NZ_CP038515.1\|WP_124251372.1\|1268520_1269285_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.16008e-22
NZ_CP038515.1\|WP_171281745.1\|1279192_1280593_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP038515.1\|WP_011707736.1\|1275767_1276748_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	0
NZ_CP038515.1\|WP_171281740.1\|1267497_1267902_+\|CBS-domain-containing-protein	gnl\|CDD\|341392	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	6.65419e-56
NZ_CP038515.1\|WP_011707724.1\|1264432_1265833_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	2.05914e-42

>NZ_CP038515.1|WP_124251372.1|1268520_1269285_+|transporter-substrate-binding-domain-containing-protein
MRRFILLCLLFPLWLQAKELIIGGTLEPPLKFLDAQGVPHGLDVDVVSTIFGKLRIPIRIELTDSGARLTRNAETGVYDLVMTHSYKPERERYLLYPQQAHLRHSWHFFVRKADLLKIRYDTLADLKPWRIGITKDFSYTPELTAALADPAYHFQEIPINQLQLRKLIAGRIDVVPMPLVTAFAQIKEEGLEGKLDYLPKPLKASPYYTVWTKARADATTPALMAAYDAELLRMKRDGRLKAIYDHYGIPYIEP
>NZ_CP038515.1|WP_171281741.1|1267898_1268435_-|hypothetical-protein
MANPEIESELDGIDRVSVCLYRLGLSLAALLLLCRGASLLLGQDFLAPASWLVALAVASGVCGLCLHVYDKRIRFVLQGLGWGALLLSASGAPDVLVLGAALATLAGLAFKEQFCFAIPGIRAVPLLLPLLWLLELAGIGWAAALVELVCGLLLCLLSLAKWRMPLHFDIGDKRRYQI
>NZ_CP038515.1|WP_171281740.1|1267497_1267902_+|CBS-domain-containing-protein
MLQIRDHMSRLTHSLTPQLGLAEALDRLHDSGLSGLPVLDPQQRLIGFLSEQDCIPSLLTGSYHCDTRTRVEDLMSRTPLSVSPDDSILDLASQMTEARPKVYPVLEGNRVVGIISRRQVMQALNAQMKGCLPT
>NZ_CP038515.1|WP_171281739.1|1266672_1267377_-|SDR-family-oxidoreductase
MRALVTGCGRRLGFYLCEQLVAAGWQVTGSYRSERPELARLRALGVELVQADFAREEEVGKLIEALAVHQDLALVIHNASAFEPQAADPAAQLAQFDQFYRVHMAAPFQLNRALASQLARNANAGIIHITDIYIHAPAPQFASYVATKAGAHSLAMSFARELAPAVRVNTIEPGPILFLDEHGDAWRQQVLAKTPLAREGGLAPIWQAVQLLMQNDYMTGASIRVDGGRSLAVI
>NZ_CP038515.1|WP_011707725.1|1266153_1266669_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MFYLCSIGSNLDPHQHVSQAVGELLVHFGRLQLSSVIQTKPVGMHSSHDFLNCLFVAESELAPHQLKAHFVAMELAHGRDRSDPRCKVLDRPLDIDILASSQSDDFSTARVDAYLDELLAELYGRGQVHDRKVTLPLHTRLMAGKVIEERQVGLAPIALQQEMATPAALLR
>NZ_CP038515.1|WP_017409791.1|1265931_1266024_-|YnhF-family-membrane-protein
MSVELKWALLTASGALAMILIICVASVGLA
>NZ_CP038515.1|WP_011707724.1|1264432_1265833_-|HAMP-domain-containing-histidine-kinase
MTKVRPRSLLQVVLMGFVLVLMPLGGMIWHDSQSLEHLSQLTSDELERAVRDTRRATLLTTQAIDLERTLRRYAVLGDERILASYQQQLASYRSLLAAHQSSIPDAEAYTGLEQALAWLDSLQDLARAKAESNSPKFDEFNQVNQQLEIITRSQVDEHVSRVRATIAALMTEIWWVSGFVAVLSLLLVLLFTYLIIHPVRQIESRILSLGAGVEPDKRPVDGPAELVLLGERIVWLHDKLKELEQQKYQFLRHVSHELKTPLAVLREGADLLSEQLVGPLTPDQQEICQMLEENSRRLQTLIERLLDFNRLSQQEVFTLTPVALAPLLSELSAEYRLALESKQISVHLPTDPITLQAEPYRLRLILDNLFSNAVSYGASGGQIWIRAGQDGNGSWLEVANEGPAIPLAERERIFEPFEQGSIVRQGLLKGSGMGLSIARESAMSLGGELVLVEDEQADVCFRLTLK
>NZ_CP038515.1|WP_171281738.1|1263908_1264424_-|hypothetical-protein
MKQCVVPVLMMSLLTGCSLLPARDPAASPDLALAKRMEFANKEMQVRLQYSDWLLASHALQRAQERQRLKGATDIESRVSLAMVNTHPSESVASRRAGLDKLKSLLPELGLDAQAFLRSWIALGEELLARDSRRDDQSQEVQRLRRQIEQLSAIDDQLNQRKLNGNGEALK
>NZ_CP038515.1|WP_011707722.1|1262631_1263912_-|sigma-54-interacting-transcriptional-regulator
MSRILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRADLVLSDLRMAGMDGLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSLTRPKQRQDWQSLILTRNPQMEQLLIQAGSIAAMEVPVLIMGPSGSGKGVMTQALHQASSRRDKPLHVINCAALPWAALDLQLFGEDGQSGLFEQAKGATLFLDEIGDLSESLQAKLLQVLQEYGQGTPEVRVISSSHQDLVAAMEEGRFREDLFYRLNVANITLPPLSARSEDIPLLARQALDDYRSRHGDCAALGFSPEALALLAAAGWPGNVRQLCSVVEQLASLCCSPVIGAAMVESALSGGSGGIPSFNEARAEFEKEYLIRLLRTTEGNVTLAANMAGRNRTDFYKLLNRHGIEAANFKSKG
>NZ_CP038515.1|WP_011707721.1|1262076_1262559_+|DUF1097-domain-containing-protein
MSPLIAIAITTGILSAVWGWVAVTLGLISWVGFLGCTSYFASSGGYKALLQTLLCNASGMLWALLLIHGDAWWGAGVAGYLMTGVVATLMCVQAKQQWLGYIPGTFAGCCATFGAAGEWRLILPSLVIGALFGYLMKASGLWLSHKTQKTQATAGVTDPA
>NZ_CP038515.1|WP_016352287.1|1270079_1271072_+|aspartate--ammonia-ligase
MKQHYIRSQQQISFVKEMFSRQLAQQLGLMEVQAPILSRVGDGTQDNLSGHENAVQVKVKTLPEHSYEVVHSLAKWKRQTLGRFGFGPGEGIYTHMKALRPDEDRLTPIHSVYVDQWDWEKVMPSERRDLAYLQETVRGIWAAIKATERAVCAEHELTPFLPAEIQFLHSEELLTRYPDLDAKGRERAIAKELGAVFLIGIGGALSHGERHDVRAPDYDDWSSHSELGLAGLNGDILVWNPVLQDSFEISSMGIRVDAEALRRQLAITGDEDRLQYDWHQDLLAARMPQTIGGGIGQSRLAMLLLQKEHIGQVQVGVWPAEMKAAVQGML
>NZ_CP038515.1|WP_171281742.1|1271281_1272106_-|MBL-fold-metallo-hydrolase
MLKFSVLVDDDVHLPGCLPERGLALLLECDGLRVLFDSGRGRALRHNAAAMGIDLASLTHVVLSHGHYDHVGGVSSLPAYPRPIPLIVCPDVFCERGYFLSLPFWRRNLYRLSGALAWESLPARGLLPHCSAEPVWLSDRLVFLGSIVRRDRAAPSLLGYIVRGGRVEKDLISDDSALAYKSEQGLIVFIGCGHAGVENIIERAKEVCGDERIHAVIGGLHLKFSGPQRAVALAAYLQEEAVDQLFACHCTGSRKAELPRQRQIGAGFEHSFSA
>NZ_CP038515.1|WP_024945187.1|1272166_1274740_-|ATP-dependent-chaperone-ClpB
MRLDRLTSKFQIAISDAQSLALGRDHQFIEPVHLMTALVNQDGGSIRPLLTLTGMDINSLRSRLGEELDRLPRVSGVEGDVQLSNGLGRLLNVCDKLAQQRKDQFISSELFVLAALDEKGTLGELLRAQGLTKEKLEAAIDKVRGGKKVEDANAEENRQALEKYTIDLTERAEIGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGAPGVGKTAIVEGLAQRIINGEVPEGLKNKRVLSLDMGALVAGAKYRGEFEERLKAVLNDLAKEEGNVILFIDELHTMVGAGKGEGAMDAGNMLKPALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVEEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAQLSHRYIADRQLPDKAIDLIDEAAASIRLQIDSKPESLDRLERRIIQLKLEQQALMKEDDDASRKRLELINQEISEKDREYNELDEVWKAEKAALAGTQHIKAALEQARQDLDVARRAGDLGRMSELQYGRIPELEKQLDLATQAEMQETSLLRNRVTDVEIADVLARWTGIPVARMLEGERDKLLRMEDQLHSRVIGQEEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAEFLFDTQDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNSVVIMTSNLGSDLIQEHHSEKDYDEMKGMLMEVLTRSFRPEFINRIDETVVFHPLGEEHIKSIARIQLKSLMGRLEAQGYEVEVSEALLEKLVHAGFDPVYGARPLKRAIQHKVENPLAQALLSGRIVPGKKLVLGADSNGLTMTQ
>NZ_CP038515.1|WP_171281743.1|1274911_1275649_-|peptidoglycan-editing-factor-PgeF
MKWIEPDWPAPAKVSALSTTRDGGISEGVFAGLNLGAHVGDEPARVETNRTRLQQAAGIPGTLNWLNQVHGTAVHPVSRDYGCAPDADAACAREAGQACIVMTADCLPVLFCDRAGTVVAAAHAGWRGLQGGVLEASIAAMGCEPGEILAWLGPAIGPTAFEVGGEVREAFMAEQAEAAAAFVPSPNEGKWLADIYQLARLRLARAGVTAVYGGEHCTYSDSEQFYSYRRNGQTGRMASIIWLAP
>NZ_CP038515.1|WP_011707736.1|1275767_1276748_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSQHIELTGEFQDHQFGQRLDQALAELFPDYSRTRIKEWILQDRVTLDGQVANTPREKVLAGQKVHVDVELADDTRWDAQNIELNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPAIAEVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEALQARQITREYEAIAIGHMTAGGTVDAPIGRHPTQRTHMAVVPNGRESVTHYRVHEKFRGHTRLRLRLETGRTHQIRVHMAHIKHPLVGDPAYGGRLRLLRNATPELTEALRGFHRQALHATMLKLAHPITGEVMEWHSPTPQDMLDLMEVLRADTLANPDDLVWN
>NZ_CP038515.1|WP_017409782.1|1276865_1277621_+|outer-membrane-protein-assembly-factor-BamD
MGKKSHLLMSLALVATLITGCSSTKPKVPDEPPETLYQKARLKLDAGNYLNAIELLEALDSRYPFGAYSNQVQLDLIYAYYKQDDTAQAIANIDRFIRLNPAHKNIDYVFYMRGLTNMAGDYNFFQDFLGINRDDKDPSYARQAFQDFKTLLQNYPNSVYAADARARMIGLKNRLARYDLSVAEYYVKRDALIAAANRAKLIVETYPDTAETEKALEIMINSYDSLKMPTLAQHAREVLAKNYPDNRLGRG
>NZ_CP038515.1|WP_171281744.1|1277769_1279098_-|CoA-disulfide-reductase
MRIVIIGGEAAGMSAAAKARRLAKEAEIVVYEASEVISFGACGLPYFVGDEFQEPGYMAEFTPEQFAAKGIEVKTGHRVLGLDATAQTLTVEHKGDTFTDRYDRLMIATGAREVMPPIPGLQQEGVFGLRRMADGLALKAAVQDKANGRALVIGSGFIGLEVVEALVHQGKEVRLIELAERVIPDAFDGEITQHIETELREQGVSLHLGERVEALLGEGRVTGVRTSQGEYEADIVVVCTGVKPNTEFLADTGIERLGNGAIKVDRQGRSSLANVWSAGDCASVWHAVKQQQVYVPLATIANKLGRMVGENLAGAEQEFPGTLGSAALKVLGLEAGRTGLSEQEAKAMGIDYRTVVIKDKCHTNYCPGQSDIHVKLVYEAGSKRLLGGQILGRKGAVHRIDALAVAITMGVTTEQLGMLDFAYAPPFSRTWDVLNVAGNVAK
>NZ_CP038515.1|WP_171281745.1|1279192_1280593_-|L-cystine-transporter
MTLSVIGNLAILVMLLLFLYRLQQTHVSFTRRVFSGLGLGILFGAALQLLYGAGSDVLVQTGDYLDIVGSGYVQLLQMIITPLIMVSIIGAILKLNGGTALGKISAMTIGVLIFTTMIAAGAGILMSNLFGLTAEGLTAGAAETARGAALQTTLGSVESMSFAKMVLEFIPANPFLDMTGARKTSTIAVVIFSIFIGLSATGIARKKPEIFASFGHFMQVAHVIVMRMVTLVLRLTPYGVLALMTKVVSGSNYADILNLLSFVMASYGAIAIMFAVHLLLVSLVGINPARFLKKIMPVLAFAFTSRTSAGSIPMNVQTQTKALGIPEGIANFAASFGSTIGQNGCAGIYPAMLAVMIAPTVGVNPMDPGFIMTLIAIITVSSFGVAGIGGGATFAALIVLSALDFPVALAGLLISIEPLIDMGRTALNVSGSITAGTVTSRLLGETDMAVFNSEHEVCLDGEESTI
>NZ_CP038515.1|WP_049045902.1|1280758_1282066_-|serine-dehydratase-subunit-alpha-family-protein
MRYIAMKAQWTDFITLLKREVVPALGCTEPMSVALAAANCRKLLGQVPTRVSVWVSGNLFKNGMGVGVPGTGMIGLPVAAAVGITGGNPDAGLEVLKTLTPDQVDAAKALLPAIKVDVKDVPDVLYAEVLAQVEGHSARVVICTDHTRIILMERDGEVLMAQDSAPGVQIQAAPSSKPAMTLREIVEFALQVPLAEIDFIREAATMNQALADEGLQGYGLRIGKILTEQVERKLLSDDLMTLAMRLSSAASDARMDGAMLPAMSNSGSGNQGIAATMPVVAAARFLQASDEQLTRALVMSHLVAIYIKTYQNKLSALCAASTAAMGAGAAITWLLGGQFEQISHCINNMIGDVSGIICDGAGSACSMKVSTSTSAAVKSSLMAINNLHVPQSEGIVSDDVDQTIANLGRLSKQGMLDTDIEIINIMRAKQQGKAE
>NZ_CP038515.1|WP_171281746.1|1282377_1283130_-|transporter-substrate-binding-domain-containing-protein
MVWRKGWILLCLWWGWAVQASEPPTLTLLTELWPPYVMRLDDGSLGGADLELARTVLKRMGYRTTVKVLPWKRVLQEARLQRGDAIVDAFFEERRLEWLHYPDEPLSQSGEVLFFPFARPVDFQGLASLKGLRIGTQADYAYGEEFLTSALFTRVAMTGESNMIKQLHLMMAGRLDGVVMNQMVGRYLLKGQGLQDQVGHSEKLVSESNRNFLAFTHRPGNERLAYQFSLALKAFKQTPEYQSLLTRYGL

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Crispr_ID: NZ_CP038515_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_9

2043515-2043636

Orphan

Consensus_repeat	Method
GCCGCACTGGCGGCAGCCGGATTATCCACGGGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_9

>merge|NZ_CP038515|9|2043515-2043636|CRISPRCasFinder
GCCGCACTGGCGGCAGCCGGATTATCCACGGGCGTAGCTTCGCTCGGCATGGCTGCGCTGGTGGTCTGGGCACTGCTGGTTGGTGTTGCCGCACTGGCGGCAGCCGGGTTATCCACGGGCGT

>NZ_CP038515|9|9|2043515-2043636|CRISPRCasFinder
GCCGCACTGGCGGCAGCCGGATTATCCACGGGCGT	AGCTTCGCTCGGCATGGCTGCGCTGGTGGTCTGGGCACTGCTGGTTGGTGTT
GCCGCACTGGCGGCAGCCGGGTTATCCACGGGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_101616170.1\|2053146_2053878_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP038515.1\|WP_171282048.1\|2056993_2058400_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341285
NZ_CP038515.1\|WP_042066117.1\|2041163_2042075_-\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NZ_CP038515.1\|WP_011704482.1\|2039223_2039619_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP038515.1\|WP_171282039.1\|2039650_2040364_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171282040.1\|2040411_2041167_-\|lipase-chaperone	unknown	unknown	gnl\|CDD\|234937
NZ_CP038515.1\|WP_171282037.1\|2035014_2035644_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|239344
NZ_CP038515.1\|WP_045790754.1\|2053880_2054906_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|237924
NZ_CP038515.1\|WP_024943668.1\|2050144_2050534_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171282044.1\|2044672_2047420_-\|collagenase	unknown	unknown	gnl\|CDD\|366791
NZ_CP038515.1\|WP_171282038.1\|2037454_2039188_+\|HTH-type-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP038515.1\|WP_011704492.1\|2049502_2050045_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP038515.1\|WP_171282047.1\|2054914_2055454_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP038515.1\|WP_016349280.1\|2037177_2037354_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171282045.1\|2047924_2048248_-\|fimbrial-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171282042.1\|2042812_2043427_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP038515.1\|WP_011704479.1\|2035752_2037021_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|180392
NZ_CP038515.1\|WP_171282046.1\|2050601_2053136_+\|fimbria/pilus-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185184
NZ_CP038515.1\|WP_171282041.1\|2042365_2042791_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_168755579.1\|2055456_2056692_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|294013

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_101616170.1\|2053146_2053878_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	1.38249e-66
NZ_CP038515.1\|WP_042066117.1\|2041163_2042075_-\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	8.0105e-67
NZ_CP038515.1\|WP_011704482.1\|2039223_2039619_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	7.89938e-31
NZ_CP038515.1\|WP_171282040.1\|2040411_2041167_-\|lipase-chaperone	gnl\|CDD\|234937	PRK01294, PRK01294, lipase secretion chaperone.	2.99949e-11
NZ_CP038515.1\|WP_171282037.1\|2035014_2035644_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|239344	cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	1.54704e-35
NZ_CP038515.1\|WP_045790754.1\|2053880_2054906_+\|fimbrial-protein	gnl\|CDD\|237924	PRK15206, PRK15206, long polar fimbrial protein LpfD; Provisional.	2.23716e-23
NZ_CP038515.1\|WP_171282038.1\|2037454_2039188_+\|HTH-type-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP038515.1\|WP_011704492.1\|2049502_2050045_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.99641e-29
NZ_CP038515.1\|WP_171282047.1\|2054914_2055454_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.41704e-23
NZ_CP038515.1\|WP_171282048.1\|2056993_2058400_-\|AMP-binding-protein	gnl\|CDD\|341285	cd17630, OSB_MenE-like, O-succinylbenzoic acid-CoA ligase. This family contains O-succinylbenzoyl-CoA (OSB-CoA) synthetase (also known as O-succinylbenzoic acid CoA ligase) that belongs to the ANL superfamily and catalyzes the ligation of CoA to o-succinylbenzoate (OSB). It includes MenE in the bacterial menaquinone biosynthesis pathway which is a promising target for the development of novel antibacterial agents. MenE catalyzes CoA ligation via an acyl-adenylate intermediate; tight-binding inhibitors of MenE based on stable acyl-sulfonyladenosine analogs of this intermediate provide a pathway toward the development of optimized MenE inhibitors.	6.1851e-138
NZ_CP038515.1\|WP_171282042.1\|2042812_2043427_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	6.58413e-110
NZ_CP038515.1\|WP_011704479.1\|2035752_2037021_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|180392	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase.	0
NZ_CP038515.1\|WP_171282046.1\|2050601_2053136_+\|fimbria/pilus-outer-membrane-usher-protein	gnl\|CDD\|185184	PRK15284, PRK15284, putative fimbrial outer membrane usher protein StfC; Provisional.	0
NZ_CP038515.1\|WP_171282044.1\|2044672_2047420_-\|collagenase	gnl\|CDD\|366791	pfam01752, Peptidase_M9, Collagenase. This family of enzymes break down collagens.	3.14887e-84
NZ_CP038515.1\|WP_168755579.1\|2055456_2056692_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	7.95117e-17

>NZ_CP038515.1|WP_171282042.1|2042812_2043427_+|superoxide-dismutase
MSHTLPALPYAYDALEPHIDALTMEIHHSRHHQTYINNLNAALADLPELAALPVEALLARFDSLPGKVQGAVRNHGGGHANHSLFWQVMSPQGGGEPGGELAAAIERDLGGLEAFKQAFTQAALSRFGSGWAWLVVDRSGKLQVVSSANQDSPLQDGLVPILGLDVWEHAYYLKYQNKRPDYIAAFYKVIDWNEAARRYVAALA
>NZ_CP038515.1|WP_171282041.1|2042365_2042791_+|hypothetical-protein
MVHWKVQTMSGNRHFDAGEHGKALSCYQQALWLARQQFAGWPDVDEAVAALVVAHHNLADLLIAMARPERAADLLCHIHECLLATSQSPASPDPLRDAALRHTRSTHAELLAFLRKHGNHDGIRRCLGQCLCQTGSARQLH
>NZ_CP038515.1|WP_042066117.1|2041163_2042075_-|triacylglycerol-lipase
MKKWLLVLLCALPMLGQAAGYTQTRYPIVLVHGLFGFDKLLGVDYFYGIPQALTRDGARVYVAQVSATQSSELRGEQLLKQVQQVLAITGAEKVNLIGHSHGGPTIRYVASVAPELVASATSVGGVNYGSEIADLVRANVAPGSVAEKLAVAAASALSGVISLLSGGSQLPQDPLAALDALTSAGAQRFNQRYPEGLPSQYCGEGPMQAANGVYYFSWSGRGTMTNILDPVDPALALTGSFFKEPNDGLVGVCSSHLGKVIGTDYRMNHLDEVNQSFGIRHLFETDPVSLYRQHANRLQRLGL
>NZ_CP038515.1|WP_171282040.1|2040411_2041167_-|lipase-chaperone
MNKAWLMAAPLGAALLLGGWQLWPAPSPISAAPPAQEAGPSSPLARQAASSPDENSLQARYEAFLAAEGSLTVPTDPGLASLQVLFDEREQLRQQSFTPAEQEQLFAEDRLMEQWTLRRKALAEAGDADKPLLASELELWLAEQPQWFREAEANSRLLGDLQSLERLPAAERGAVLREQLGPEAADRLHQLAESQQGFEQQLAGYLAELKPLPAERRAEQQPEILARWFEPDQWRRVEALTRLRLGESSPQ
>NZ_CP038515.1|WP_171282039.1|2039650_2040364_+|hypothetical-protein
MRNTVITLSLGLGLGLCSLPSVAASLAEQFSLMEKGAESALDTRLFSHDGVDIKAWVDGAPVIIAVPIMNEQGKLEGESRYYFKGGKLFGVKEPAAQFAFDDSGKLTQWLDEKGQPAEFVSKMSMQQREVWLTKRAAELGQLFAPSAAEQKAAKGGVKLKGAELAHWLCSGKLMALAGGDKVTFEQAKLKTRAEGIEGEVSLRQDKGWQDLSLKCEVQGSQVTRLTWQPLPGANKPL
>NZ_CP038515.1|WP_011704482.1|2039223_2039619_+|acyl-CoA-thioesterase
MLEMQIQPRFQETDALGHINNTVPAVWFESARDPLFRIFSPELDVHNWHLIIAGYTVQFKRELFYGQQVLIKTGVRRIGSSSFTLWQEAWQGDELAVTAETTLIHFDYQSRQSIPLSDRHREGLRAWLIES
>NZ_CP038515.1|WP_171282038.1|2037454_2039188_+|HTH-type-transcriptional-regulator-SgrR
MPTSRLYQQFQRLAQQLGCDEREISLAEVADLLCCTPRNARLLLRRMQDQGWLSWAAEAGRGRRSRLTLLDNQESLTRRRLRDLLSQGQLAQAVRLAEDRLDLLTPLLIEQLGQATREGRQILRVPYYRPLPRLLPTGPLRRSEIHLSRQIFNGLTRRNEENGEIEGDLAHHWECLGPCHWRFYLRPAVRFHHGRELVVEDVVESLLALRDRPLFAHLARLESPWPRTLDLHLDSPDPLLPQLLAEPVAAILPRELKGEAGFALQPVGTGPYRVTANDPLQLCLEAFDDYFGLRALLDEIDIWMLPELAERLESHLQLGRDSPELGTMRGESELESGCYFLLQDDRSAPLQDPALRQWLAGLLNPIALMARVAPELQRGWTSALGLLPHWREAQPAPLPTPKQLPRQLVLACFNQHLEFNECANAMSSLLAEQGIRLEVRTLDYGRWVSGADEDVDLWLGTLNLEHEHAFAPYAWLQGTPLLRKVWGSQQRLWQGLTQWRASGEEPGPRALLAEVQRQGWFVPLFHHWLELESRVGVHGVRMTALGWFDFRSAWLRPELAVGTGDTTGELESKGGPR
>NZ_CP038515.1|WP_016349280.1|2037177_2037354_-|hypothetical-protein
MSHANPIKPNRIQQILRRYFKRILPRPLTLIEDPMSQLNRLMQWDMQQIDDREYRRRL
>NZ_CP038515.1|WP_011704479.1|2035752_2037021_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MKDATLALHHGFTSDPTTKAVAVPIYQTVAYEFESAQHGADLFNLAVPGNIYTRIMNPTNDVLEQRMAALEGGIAGLVVSAGSAAITYAIQALTAAGDNIVSTPQLYGGTYTLFAHMLPSFGVEVRFAKDDSAEAIAALIDDKTKAVYCESIGNPAGNIVDLAAFAKVAHARGVPLIVDNTVATPVLCKPIEHGADIVVHSLTKYVGGHGNSLGGVIVDSGKFPWADHAERFPQLTKPEPSYHGVVYTEAFGPAAFIGRVRTVPLRNTGAALAPMNAFLLLQGLETLSLRMERHVDNALRVAHHLKHHPKVAWVSYAGLPGHPHYLLAEKYMAGRPSAILSFGLKDGYEAGVRFYDALKIFKRLVNIGDAKSLACHPASTTHRQLSEAEQAKAGVKPEMIRLSVGIEAIEDILADLDQALEA
>NZ_CP038515.1|WP_171282037.1|2035014_2035644_-|glutathione-S-transferase-family-protein
MIVLHHLNKSRSQRIIWLLEELGLPYEIKAYQRDATTFLAPPELKAIHPLGKSPVIEFDGRVLAESGAITEYLIAHHAPERLAPAPDSPDYAEYLQWLHFAESSGILPLLLDMFVRKDGSPMRFLPDYAKAECAKVLGYLDEVLASRRYLVADRLTGADILNSFLVDLLAQSGQLAQFPHLKSYWERLNTHPARQKAAALERELDRSAG
>NZ_CP038515.1|WP_171282044.1|2044672_2047420_-|collagenase
MNNLGTRLLLLAAPGLFATSALANYSPSDWQQYQLKGESSRQLGDRLTEVTYELSARSGDAPYQQLRVYRRFDWSDANLAALAEQHCGEPQLKIEQGWQIRYLSCEEVVPAGKAVPASSYDFGYGMKQGRWEPLAGTPTAPRQDRLPLAERVILGHSEQELDRCELNAEGRCAEQAWQYQPQNWQQLKVLEETPNERDGRLEQIFFRLQPIAGSQAARQVSELHVWRQYTWLLEQAKTQQECDEPQTRQEGDKTISYRVCRQTLPAGSEVQVVLKDTGYQYPVGGSEWQTLPETAEWQESRVLNRPIVLASKEEQLDCRRADGRACSEPDLPGTELLDAEAAKIVQDASGQPAPVWQENYGHDDTKLLAVSRGIQSLLAANQPAHPAMKLLLEYVRAHNYHNYGKHKEDGPAAAEALAEALTALGAHPLLFPEQASDEVGAVMGAWSIALHGQFKSPAVQSRFGTLLGEFNQMLAYSTRHASEINGQHAWATGLFDLLNFLDFASDYSDPFANDFRQQDGELRKQLHALGMSELALWKGRDGADLFLLNNVLDAYTRLYRVARYTRPDELDGYRKLLDDSVIALVRHHDLIPGGQQSQDLLEDMSLTLSTYYLTYTDRTSEACISGDFAGLCTPVRAEDVLPFEHTCSPTLRLRAQDLTMDQAEGICRELGAEEQQFHQQMETGWQPVADDHNEALELVVFNSSADWKRYGSALFGGVSTDNGGIYLEGDPARPGNQARFFAYEAEWKRPAFQVWNLRHEYVHYLDGRFNQYGSFGHYPLNRTTWWSEGLAEFIAHGQCFARGLDNVAGRPASDRPALADILHLDYDKGGEMVYSWSYTVHRFLNETGRGASWLAMAQALRNPDQQQAMSAFEAELDQLIANDSEAYQQWLGRELLPWWEANKDSDECKANDSSH
>NZ_CP038515.1|WP_171282045.1|2047924_2048248_-|fimbrial-protein
MNTSTASVRNSAIRFASSAAAAMLLGAALLPTTASAADGTITFTGTIYEAPCDFADNSVTCYSGTQRQTMDLASLQQAGSLNTISSTMQYKLSAGSSNMAIVTVSYL
>NZ_CP038515.1|WP_011704492.1|2049502_2050045_+|type-1-fimbrial-protein
MKANKILVAMGVGSMLLCGSAVAAGGAGSGKVTFNGEIINAPCSVAPESVDQVVEMGQISTKELASGGESNSKPFSIKLLNCEISDKEDAVKVTFSGAKDPVDSSLLVIGGGDAAGAGIKMTAPGGAPIVLGTPTAAFGLVNGDNELPFSAVLKGYADQTANPLKAGAFTAVTNFTLSYE
>NZ_CP038515.1|WP_024943668.1|2050144_2050534_+|hypothetical-protein
MMAAMVLQLVMMAGSVHANELTDGLAESGCTLEVLRSIPLQARQPGTLKISGCQVEGATEASLPFISMSVRGAMSDELGILNNGQYHKVSGERFIVSDIVNSDLEFNLGLTSSQLFFPDSTTLFELNYM
>NZ_CP038515.1|WP_171282046.1|2050601_2053136_+|fimbria/pilus-outer-membrane-usher-protein
MSVSTSDSVRKKHYSKMVFMLCVPGLMAVANHAWAETEFNIDALDLDERTKIDLSQFADEGYILPGDYYLEIEVNKNKLPLQKIPFYETDTGKGKGGVACLPQEVIPKLALTDEAIAKIDTWHDGQCANLLALDGVVIANDIGNGLLRIAVPQAWMKYSDPNWIPPEQWDEGIPGMMLDYNINAQVNEGDGYSNRNISSYGTLGFNYGAWRLRGDYQANAYWGDNERTTSELNRIYAYRPLPHMAAKLTVGEQQLNSQLIDGFRYTGVNLANDERMLPPSLQGYAPEVSGIAKTNAKVTISQSGRILYETNVPAGPFRIQGLDSSVRGRLDVRVEEQDGSVNSFQVDTATVPYLTRPGYVRYNLAVGAPSEQTDSVHDVHGPAFVTGDFSWGVANSWSLYGGSLVAGEYNSMGLGIGRDLYAFGAISADLTQSIAKLPGLSTKIGQSVRVNYAKQFDEYNSSITFAGYRFSQHNFMTMSQFLSNKERLEKNETTSSDDYNTWGDKELYTITANKTFWAEDAAKALTVYLDYTHRTYWEHDAEDRYGLTINKNVNIGSFKDVSVYVSAYKTKTENYEDDKSVMLTLSMPIGDRKSAGYSVQSSNGKITHLATYQDYSRPDDTYQLGAGVQSNGHAVARGYYNHNSDIGAVSLNAYSVQSEYTSVGASLRGGLTATQHGAALHQATRRGGTRMMVDTDKTSGVSFNNGRAVTNRFGVAVISDMTDYRKSDTRVDVDQLSDDIDAMNAIKQGTLTEGAIGYNAFEMAEGFKLLANVKLPDGSVPPFGATVVKDSGRVLSVVDEDGLVYLTGVKPNEAFELSWGGARQCKIVAPQQVTDLSMKTLTCK
>NZ_CP038515.1|WP_101616170.1|2053146_2053878_+|fimbria/pilus-periplasmic-chaperone
MKKLLSYTCLAVLGMTSLNVSAAIVLDRTRVVYPGGAKSISLNIKNENQKLPYLAQSWIEDAQGQKIASPFAVLPPVQRVDANQKSIVRIASVPAIDSLPKDRESIYYFNLREIPPKSEKSNVMQIAVQSKIKLFYRPEAILPERGAIWQDQVLITKQGKALKVNNPTPYYITYVGLGHPQGKGRTAMKGFSAFMVAPKSEQTVTIPEALGNEFVISYVNDYGGYMDIKYQCTDNACKAVKEK
>NZ_CP038515.1|WP_045790754.1|2053880_2054906_+|fimbrial-protein
MILRTGVLGIMFLSMPALAINGEVRADTKTYDIELTKEDIANQTGALKEFGWDLAGTYNGTAICPDQDIINQPFYYKAVMSAGLPSVGGGYVKLNEFLDLKVDIWIEGNRKEYVNAPFNEESNRGQFTCRKRNGSATFGFRSGSKGKVTFRVRKPIINGVHIADHEIVEMFGRLGKTDVGFNNEVMSRIVIKSSVLYVPEKCTINGGQTIEVEFGDLPGTGLDGNNFEKTVPLNFVCSGGEFDKDKPLKINLAISGKPTSFNQSYLRTTRDGYKGGDVINNLGIKFKQLDGSTLNLNDWYPVSMQGNIGDWGFIAAPISPAGAEVAAGDFYATGTIVASFQ
>NZ_CP038515.1|WP_171282047.1|2054914_2055454_+|type-1-fimbrial-protein
MLRLGCLGLLIFPLWVNAAADDLELLGGELNLHGRIIDQPCVVAPESLEQEVEMGVVDVKQLYANGAGEQVPFSIRLTNCKPGIFRMAKVTFTGSKDTQLSGGLAFTAGIAKGAGIRLYDVTQTPLDLGTPSRGYLLGGSADNELQFFARVEGHPDALAAKNIQPGDYSAVANFIVAYE
>NZ_CP038515.1|WP_168755579.1|2055456_2056692_-|winged-helix-turn-helix-domain-containing-protein
MSNKNYKIAEEIFFSAAIFRLSKGEKDIKLSNKEAELLEMLCDEAGSVIPRSKLQDALWPNQDNTDTNLNRQILSLRRKLESFGLMDAIDTIPRVGYIFCAPIEAAGETEEAAPNEEAQAANPSHAPQARRQYTRRKYDRYFSPKRILLFALLLVSLTSLAIVIYNYATANTLRTINLSQISLYMTSETEKALNVKIDSLTPLIQRISRKADEQVSILVGKEAISYFSIDNNSRKLSENIFLLRSGHPVAEEVQCVITTMTQQGDNVSHNYYNNPDTTVRYHSNCQAPDNWVEMTRKSKFIVTMNREIVVATVIATDNQGKTLFNLDSVGDLERDDGDISVEVKNTIVNFIDQQALTSNGMVATLVAALTPPKQTAQFVQLPGGIYLSNYLGGVITWPSLGNSKVIQRNDL
>NZ_CP038515.1|WP_171282048.1|2056993_2058400_-|AMP-binding-protein
MPPLSDHYHPLQPCPVRHWARSSPDRIAIHAADPLTYQQLDARLNGLCQQLGQAGLQAGDRLAAVVRGALPDLLLAWACVRSGIVFCPLNPAFPLTRQAELAALLTVKACWSAGEIPAGSWQPLRLDFTHELVADEGDCMLDPARPNNMILTSGSSGTPKAVVHRLANHLASARGSATVIPLDAECGWLLSLPLFHVGGYAILFRVFLAGAALVLDDRSRPLRERLEQQPITHLSLVPTQLWRLLAEGFDPARTRLRELLLGGAAIPQPLVNRLSAMGLVPKVSYGLSEMGSQVCTGRPSTAGVVGKALPGREVCIQQGEICVRGDTLFAGYFKAGGLERPLDEAGWFHTRDKGHFTVDGELVVEGRLDNLFISGGENIQPEAIEQRLVDHPAVAQALVVPVPSDEWGQRPAAFIDWHGEPVPPAELAAWIRQTLPGFMVPDQWHPWPDLGGHLKPQRRQYQNILKAQ

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Crispr_ID: NZ_CP038515_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_10

2107360-2107502

Orphan

Consensus_repeat	Method
AATGGTAACTGATCGTCATTTTCCCCTGTCCGTCACGGAGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_10

>merge|NZ_CP038515|10|2107360-2107502|CRISPRCasFinder
AATGGTAACTGATCGTCATTTTCCCCTGTCCGTCACGGAGGATAACGGCACTATTCGACGCCGCCAGTTCCTGATCGGCGCCGGTGGTCAGAGGGCAGAGAATGGTAACTGATCGTCCTTTTCCCCTGTCCGTCACGGAGGAT

>NZ_CP038515|10|10|2107360-2107502|CRISPRCasFinder
AATGGTAACTGATCGTCATTTTCCCCTGTCCGTCACGGAGGAT	AACGGCACTATTCGACGCCGCCAGTTCCTGATCGGCGCCGGTGGTCAGAGGGCAGAG
AATGGTAACTGATCGTCCTTTTCCCCTGTCCGTCACGGAGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_017408955.1\|2116272_2117544_+\|septum-formation-initiator	unknown	unknown	gnl\|CDD\|273283
NZ_CP038515.1\|WP_171282067.1\|2111249_2112065_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP038515.1\|WP_171282066.1\|2110427_2111189_+\|GspN-family-type-II-secretion-system-protein-ExeN	unknown	unknown	gnl\|CDD\|376490
NZ_CP038515.1\|WP_016349344.1\|2109874_2110366_+\|GspM-family-type-II-secretion-system-protein-ExeM	unknown	unknown	gnl\|CDD\|377391
NZ_CP038515.1\|WP_005308483.1\|2105170_2105602_+\|GspG-family-T2SS-major-pseudopilin-variant-ExeG	unknown	unknown	gnl\|CDD\|130771
NZ_CP038515.1\|WP_171280033.1\|2099313_2100237_+\|GspC-family-type-II-secretion-system-variant-ExeC	unknown	unknown	gnl\|CDD\|273770
NZ_CP038515.1\|WP_017785790.1\|2114402_2115011_+\|ADP-compounds-hydrolase-NudE	unknown	unknown	gnl\|CDD\|183303
NZ_CP038515.1\|WP_171282064.1\|2100258_2102292_+\|GspD-family-T2SS-secretin-variant-ExeD	unknown	unknown	gnl\|CDD\|274175
NZ_CP038515.1\|WP_011704554.1\|2115048_2115861_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|130398
NZ_CP038515.1\|WP_171282068.1\|2112245_2113514_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP038515.1\|WP_171282065.1\|2105765_2106317_+\|GspH-family-T2SS-minor-pseudopilin-variant-ExeH	unknown	unknown	gnl\|CDD\|130769
NZ_CP038515.1\|WP_101149822.1\|2113595_2114264_-\|GMP/IMP-nucleotidase	unknown	unknown	gnl\|CDD\|237882
NZ_CP038515.1\|WP_016349336.1\|2102291_2103797_+\|GspE-family-T2SS-ATPase-variant-ExeE	unknown	unknown	gnl\|CDD\|131585
NZ_CP038515.1\|WP_171282063.1\|2098775_2099174_-\|ribosome-associated-heat-shock-protein-Hsp15	unknown	unknown	gnl\|CDD\|182397
NZ_CP038515.1\|WP_080722382.1\|2108693_2109878_+\|GspL-family-type-II-secretion-system-protein-ExeL	unknown	unknown	gnl\|CDD\|273768
NZ_CP038515.1\|WP_005308487.1\|2106313_2106673_+\|GspI-family-T2SS-minor-pseudopilin-variant-ExeI	unknown	unknown	gnl\|CDD\|376798
NZ_CP038515.1\|WP_011704542.1\|2103798_2105019_+\|GspF-family-T2SS-innner-membrane-protein-variant-ExeF	unknown	unknown	gnl\|CDD\|273980
NZ_CP038515.1\|WP_045790733.1\|2096007_2097633_-\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NZ_CP038515.1\|WP_042862657.1\|2107560_2108574_+\|GspK-family-T2SS-minor-pseudopilin-variant-ExeK	unknown	unknown	gnl\|CDD\|377165
NZ_CP038515.1\|WP_024943636.1\|2097782_2098667_-\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_017408955.1\|2116272_2117544_+\|septum-formation-initiator	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.46701e-140
NZ_CP038515.1\|WP_171282067.1\|2111249_2112065_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	8.20499e-17
NZ_CP038515.1\|WP_171282066.1\|2110427_2111189_+\|GspN-family-type-II-secretion-system-protein-ExeN	gnl\|CDD\|376490	pfam01203, T2SSN, Type II secretion system (T2SS), protein N. Members of the T2SN family are involved in the Type II protein secretion system. The precise function of these proteins is unknown.	7.21488e-54
NZ_CP038515.1\|WP_016349344.1\|2109874_2110366_+\|GspM-family-type-II-secretion-system-protein-ExeM	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	1.57761e-49
NZ_CP038515.1\|WP_005308483.1\|2105170_2105602_+\|GspG-family-T2SS-major-pseudopilin-variant-ExeG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.66043e-65
NZ_CP038515.1\|WP_171280033.1\|2099313_2100237_+\|GspC-family-type-II-secretion-system-variant-ExeC	gnl\|CDD\|273770	TIGR01713, Type_II_secretion_system_protein_C, type II secretion system protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	2.78443e-65
NZ_CP038515.1\|WP_017785790.1\|2114402_2115011_+\|ADP-compounds-hydrolase-NudE	gnl\|CDD\|183303	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.	1.19255e-122
NZ_CP038515.1\|WP_171282064.1\|2100258_2102292_+\|GspD-family-T2SS-secretin-variant-ExeD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP038515.1\|WP_011704554.1\|2115048_2115861_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|130398	TIGR01331, 3'2'5'-bisphosphate_nucleotidase_CysQ, 3'(2'),5'-bisphosphate nucleotidase, bacterial. Sulfate is incorporated into 3-phosphoadenylylsulfate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulfate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. This model describes a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle. [Central intermediary metabolism, Sulfur metabolism].	3.69135e-98
NZ_CP038515.1\|WP_171282068.1\|2112245_2113514_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP038515.1\|WP_171282065.1\|2105765_2106317_+\|GspH-family-T2SS-minor-pseudopilin-variant-ExeH	gnl\|CDD\|130769	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	6.12202e-44
NZ_CP038515.1\|WP_101149822.1\|2113595_2114264_-\|GMP/IMP-nucleotidase	gnl\|CDD\|237882	PRK14988, PRK14988, GMP/IMP nucleotidase; Provisional.	7.2581e-99
NZ_CP038515.1\|WP_016349336.1\|2102291_2103797_+\|GspE-family-T2SS-ATPase-variant-ExeE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP038515.1\|WP_171282063.1\|2098775_2099174_-\|ribosome-associated-heat-shock-protein-Hsp15	gnl\|CDD\|182397	PRK10348, PRK10348, ribosome-associated heat shock protein Hsp15; Provisional.	7.8102e-42
NZ_CP038515.1\|WP_080722382.1\|2108693_2109878_+\|GspL-family-type-II-secretion-system-protein-ExeL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	3.36916e-87
NZ_CP038515.1\|WP_005308487.1\|2106313_2106673_+\|GspI-family-T2SS-minor-pseudopilin-variant-ExeI	gnl\|CDD\|376798	pfam02501, T2SSI, Type II secretion system (T2SS), protein I. The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. As members of the T2SJ family, members of the T2SI family are pseudopilins containing prepilin signal sequences.	6.60372e-28
NZ_CP038515.1\|WP_011704542.1\|2103798_2105019_+\|GspF-family-T2SS-innner-membrane-protein-variant-ExeF	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP038515.1\|WP_045790733.1\|2096007_2097633_-\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NZ_CP038515.1\|WP_042862657.1\|2107560_2108574_+\|GspK-family-T2SS-minor-pseudopilin-variant-ExeK	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	2.98949e-102
NZ_CP038515.1\|WP_024943636.1\|2097782_2098667_-\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	5.17924e-134

>NZ_CP038515.1|WP_005308487.1|2106313_2106673_+|GspI-family-T2SS-minor-pseudopilin-variant-ExeI
MNARGMTLLEVMVALAVFAIAGLAVMKTASEHLSGLNYLEQKTLATWVVENQLVQQKLEAKWPGDSWVEGDEQMAGQTWYWRYRGVATADSNFKALDMEVRTAPKADSPVAMIRTYISR
>NZ_CP038515.1|WP_171282065.1|2105765_2106317_+|GspH-family-T2SS-minor-pseudopilin-variant-ExeH
MKHSRQAGFTLLEVLLVAMLMGLVATAVTLSMGGARGDRELDKQARRFMAVLQQAQEYSVMDGRLVGLRVEDNSWQFMQRAAKDRKWQVMSGDKLLDRVELPDNMRLAIELEGFSWRTESDEKYEKGRDEKDRTPQVFIFPGGELTPFVLTLTQQDDDLRYVRTVKADEFGRLRLLQDEEEEE
>NZ_CP038515.1|WP_005308483.1|2105170_2105602_+|GspG-family-T2SS-major-pseudopilin-variant-ExeG
MQKRRQSGFTLLEVMVVIVILGILASLVVPNLMGNKEKADQQKAVSDIVALENALDMYKLDNNRYPTTEQGLDALVNKPTAAPEPRSYREGGYIKRLPQDPWGNPYQMLSPGQFGKIDIFSMGLDGEAGTDDDIGNWNLKDFQ
>NZ_CP038515.1|WP_011704542.1|2103798_2105019_+|GspF-family-T2SS-innner-membrane-protein-variant-ExeF
MAAFEYKALDGKGRNKSGVLEGDSARQVRQLLREQGLTPLEVNETTEKAKREANRFVLFRRGASTAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSMVATVRSKVVEGYSLADSLAAFPHVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYPIVLTCVAIGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIGTSELMQHYGLWFLLLLLVGGFVWRWWLTDDKRRRHWHQLILRLPVIGRVSRGLNTARFARTLSILNASAVPLLEGMKISGEVLSNDFARMRIGEATERVREGTSLRKSLDETKIFPPMMLHMIASGEQSGELDNMLERAADNQDREFETQVNIALGVFEPMLVVSMAGVVLFIVMSILQPILELNNMVNL
>NZ_CP038515.1|WP_016349336.1|2102291_2103797_+|GspE-family-T2SS-ATPase-variant-ExeE
MAAYQLDGVDMPAALPELPFAFARNFGVILTERQGAPVLLCRQGVTPQTLLEVRRVAGCAFTVEQMDGEAFEELLMAHYQRDSSEARQLMEDLGNEMDFFALAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPRPITEQERIAMGIELAPDQQVWRPVGCEQCNHTGYRGRTGIHELVVIDEAVREAIHSASGELAIERLIRGHTPSIRRDGIDKVLKGQTSLEEVLRVTRED
>NZ_CP038515.1|WP_171282064.1|2100258_2102292_+|GspD-family-T2SS-secretin-variant-ExeD
MINKGKGWRLATVAAALMMAGSAWATEYSASFKNADIEEFINTVGKNLNKTIIIEPSVRGKINVRSYDLLNEDQYYQFFLSVLDVYGFAVVPMDNGVLKVVRSKDAKTSAIPVVDESNPGSGDEMVTRVVPVRNVSVRELAPLLRQLNDNAGGGNVVHYDPSNVLLITGRAAVVNRLVEVVRRVDKAGDQEVDIVKLKYASAGEMVRLVTNLNKDGNNQGGNTSLLLAPKVVADERTNSVVVSGEPKARARIIQMVHQLDRDLQSQGNTRVFYLKYGKAKDLVEVLKGVSSSIEADKKGGAATTTGGGGASIGGGKLAISADETTNALVITAQPDVMAELEQVVAKLDIRRAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTGLPIGSVAIAAKDYQKNGTTTGLASLAKDFNGMAAGFYKGNWAALVTALSTDTKNDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSSVAQTQAPGTSTLGPTFDTRTIKNAVLVKSGETVVLGGLMDEKTQEKVSKVPLLGDIPVLGYLFRSTSNSTSKRNLMVFIRPTILRDADVYSGISSNKYSQFRSEQQEAAAQEGYLTSPKRQVLPQYGQDVTMSPEAQKQIQQMQSAPQTSGGSQPFVGNK
>NZ_CP038515.1|WP_171280033.1|2099313_2100237_+|GspC-family-type-II-secretion-system-variant-ExeC
MPYTIANRFGCQKILINMTLPFRDDLLSSLLARCKTVPLSRFSQPLFWLLLLLLAHQCAGLTWRLLDLGSRPVSQSWQPSVVANQSQGTNRLDLSGVSRLALFGKAKQQAQAADVVAADAPKTQLNAQLNGVLASSDPAKSIAIIAHNGLQNSYGIGDLIDGTQAKIRQVFPDRVIIERDGRDETLMLDGEEYGKPLPKPGNQDGKLSSVRNELMGNPGKITDYLNISPVRVDGRMVGYRLNPGSNPELFNQLGLVANDMAVSINGLDLRDNAQAMQAMQQVAGATEMTVTVERQGQLYDVYVGLSE
>NZ_CP038515.1|WP_171282063.1|2098775_2099174_-|ribosome-associated-heat-shock-protein-Hsp15
MPNPAETPALVRLDKWLWAARFYKTRSLARDQIEGGKVHYNGQRSKPGKHVEVGALIRCWQGQDEREVRVLEVSEQRKSAPLAQQLYEETEASLKKRAENSEARRFNSQFAPSPERRPHKQERRQLIKVKQY
>NZ_CP038515.1|WP_024943636.1|2097782_2098667_-|Hsp33-family-molecular-chaperone-HslO
MSNQDLLYRYLFEEYEVRGELVQLDHTYRHVVEAQNYPVQVQKLLGELLVATSLLTATLKFEGSITVQLQGNGPVRLAVINGDNNQQLRGVARYEGELPSDDKLQSLIGEGQLVITITPEQGERYQGIIALDADTLAGCLEHYFAQSEQLATKLWIRTGYHQGEPRAAGILLQELPAQSEDHSDDFEHLTQLTSTIKDEELFGLEAEEILYRLYHQDKVRVFDPQAVEFRCTCSRARCEGALLQIEKEEVMEMVQELGKIDMHCDYCGAQYQFDGIDVETLFSRAPGNDANKLH
>NZ_CP038515.1|WP_045790733.1|2096007_2097633_-|phosphoenolpyruvate-carboxykinase-(ATP)
MTIVAEPTLAKQLGLDQYGIKNSTEILRNPSYDQLFAEETRADLEGFERGVVTELGAVNVNTGIFTGRSPKDKYIVKDATTQNTVWWSDQGKNDNKAITPEVWSHLKSLVTKQLSGKRLFVVDGFCGANPDTRLAVRIITEVAWQAHFVKNMFIRPSDEELKTFKPDFVVMNGAKCTNPNWKEQGLNSENFVAFNLTEKIQLIGGTWYGGEMKKGMFSMMNYFLPLRGIASMHCSANVGQDGDVAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPDIYNAIRRDALLENVTVAADGTIDFDDGSKTENTRVSYPIYHIENIVKPVSKAGHANKVIFLTADAFGVLPPVSKLTKEQTKYHFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLSLHPTKYGQELVKRMEAAGAEAYLVNTGWNGTGKRISIKDTRAIIDAILDGSIEKAETKVLPIFNLEVPTALHDVNPAILDPRDTYANKAEWDAKAVDLAGRFIKNFERFTDNEEGKRLVAAGPQL
>NZ_CP038515.1|WP_042862657.1|2107560_2108574_+|GspK-family-T2SS-minor-pseudopilin-variant-ExeK
MAADRRFSRPGRQGGMALLVVLLILSVMVIIASNMSGRLQLELRRTANLTAGKQAWWYAMSAEALVSKVLAQDFKDDPNVVSLGQNWARQDAVFPVDDGKLTGRVRDLQSCFNLNSLSVPLKDGISGDDLEKQPYPVKVFKVLLKQLEVEDYEAVQLTDAIRDWTDKDTVLVSSYGAEDAYYEGLTPPYLTANQWMLGTDELRAVRGVSAKLYARLAPYVCALPNDKLVVNVNTIRPEQSALLVALYLDKVGLDDAKRVLTSRPQKGWKNKKEMTDQMPVQVGNIQGLDAALDVKSSYFEARLIAEVGDTRARLESVFVRGKDNKLVMLRRLNGGAE
>NZ_CP038515.1|WP_080722382.1|2108693_2109878_+|GspL-family-type-II-secretion-system-protein-ExeL
MSESLVIRLGTNAQQPVEWLVWSGGEEEVIASGTLASAHALGELQERAGGRPAVVLVPGSDLIFRRVSLPGKYSRQSAAALPYLLEEQIASDVDELHLVVLGHQGHEVDLMAVDKEKMQTWLGWLEQAGLKSRQLLPDVLALPQATDGWSALQLGKEWLLRQGPCQGIVADEPLLAMLLAAEPAPVTIHSHTPPPAIAAASWQAADPELPMLLLARGALASQANLLQGPYRPQTEYSRYWQQWRKVAVVAGALLVVAFAQRGVQLYQLAEQDKALKAEIRQVYTRIFPGESRIVNVRSQMTQHLQQLGQTPQDGVLMVLTELAPTFAEVPGLKPEVLRFDAARGELRLQVTAPGFAEIERFRELAGKRFDVQQGEVRSTEGKVEGALVLKGKSS
>NZ_CP038515.1|WP_016349344.1|2109874_2110366_+|GspM-family-type-II-secretion-system-protein-ExeM
MMDKLQGWWRGISAREQRLVAVGGSVLLIGFCYWVIWQPIGNRIDERERQVLSQQQTLAWLKEKGEEVLALQGGQGRQLDTSGTLEGVVNRTAFNQKIKIARLQPQGQELQVWIDTVAFDDLLIWLATLADRHGVQVQVIEVARENLAPGLVKVRRLQLSRPQ
>NZ_CP038515.1|WP_171282066.1|2110427_2111189_+|GspN-family-type-II-secretion-system-protein-ExeN
MKQRVLIAVLFLAAYLVFLLAKLPASLVVRYLPLPPLVQLEGVSGTLWSGQVARLQYASESLTQLRWELNGWSLLRFAPEVSLRFGERSGLNGQGVVGWSGAAFGRDITLNVPAPWLLARVPMQLPVPVPVTVAGQLQLKLDQVAQGNPWCDNLYGNLYWYGADADTPAGKLVLGDPEIKLTCIDSRLVAELKQGSEAVQVQGKLELQANRQYLFQGTLKPGPELPEQMKQGLPFLGQPDGQGRFPLRYQGRI
>NZ_CP038515.1|WP_171282067.1|2111249_2112065_-|helix-turn-helix-transcriptional-regulator
MIQTLATEALTRSMTEVVDALHGSAFPAALVRLIQQQVAFDCALLLGVGQRPVYLYDNLHHQRALLFDRYLTRHFSQDPFMQALEQSLGAGVWTLAQVSRGRLDPEYRHHFYQATGWQEEVGLILPVRGGLTLMLFLGRLDKRSSLSRGELARLDALFPLVHSLCRQHWREEAALLAQSPMLPGGADLKATVEQAIASVGGASLTRRERQVAGLLLQGLDTEAIAGALGIGSGTVKNHRKHLYAKLHLRSRAELFRFFLNHLITAPAAAAP
>NZ_CP038515.1|WP_171282068.1|2112245_2113514_+|tyrosine--tRNA-ligase
MINPHLLDELTRRGLVAQNSDPVALASHLATPRTVYCGFDPTAGSLHIGHLVPLLMLRRFQLAGHTPVALVGGATGLIGDPSFKATERNLNSAQTVQGWVASLSAQIKALLPASEGLAAPLLVNNADWMGQMSALDFLRDIGKHFSVNAMLARESVRQRLARPDQGISFTEFSYALLQSQDFAVLNQRLGCTLQIGGNDQWGNITSGMDLTRRLHQAQVHGMTLPLITKADGTKFGKTEGGAVWLDPALTSPYAFYQFWLGTADEDAYRFLRYYSFMALAEIEALEAEDAKRQGRKLAQQVLADELTELVHGKGALAAVQRISELLFSGEVARLGESDLAQLAQDGMPSCRIEGETSLVTLLVESGLANSRRIARELLAAGAISLNGEIRRDEPLTTADRLFGRYLLLRRGKKQYRLVMWQG
>NZ_CP038515.1|WP_101149822.1|2113595_2114264_-|GMP/IMP-nucleotidase
MPTPLPWHQIDTVLLDMDGTLIDLHFDNHLWQQLVPERYAERLGLPLAEARVQIEAHYQAVSGTLNWYCVDYWSETLGLDIRALKQEILAKIQWRPHVIPFLAALRAAGKQLVLFTNAHPASLSVKDAQLGLAGHLDLMVSTHELGWSKESQHCWQALAERLAFDPARTLFVDDSERILRAAADYGIGYQLAIQNPDSCQPEQHITAFPAIRDYAELLPLAV
>NZ_CP038515.1|WP_017785790.1|2114402_2115011_+|ADP-compounds-hydrolase-NudE
MSDLHQRKPVHLSADTMAHDKSKPEILKAEIVAESRLFKVESLHLKFSNGEERVYERMRGGNRGAVMVVPLFDAHTLLLVREYAAGTHSYELGFPKGLIDPGEDAFEAGNRELMEEAGFGANSLTLLKQVSLAPGYFSSRMDILLARDLFPEQRVGDEPEPLEVIPWPLNRIDELLARPDFTESRSISALLLAQRWLAEQAE
>NZ_CP038515.1|WP_011704554.1|2115048_2115861_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MQELLAWVPGVKEIAREAGRILHEIYHGGQFERQLKEDATPVTSADLAADAYLKQALSALTPHVPVLTEEAADIPFSQRANWRQYWLVDPLDGTGEFIAGSGDFATLIALVQDNVPVLGVIYAPESNVLYWAVRGHGAFKEANGEVHPISAMHHEHDQPDSLVVAISRRQKLENLTRRLNPAINYELIPLGSSSLKSCLVAEGAADCYVRLGPTGEWDTAAAQCIVEAAGGRILSLALQPLRYNETESLENPDFIVMGDPDLAWGSILAH
>NZ_CP038515.1|WP_017408955.1|2116272_2117544_+|septum-formation-initiator
MSLSVDVTKELSGSCSTTVSATPWRRHDTHWVISLFGTAVGAGILFLPINLGLGGIWPLIIVSVLAGPMTFLAHRGLARFVLSSSRPHADFTEVAQEHFGKMAGRLISALYFLSIFPILLIYGVGLTNTVESFMINQLGMDAPNRVMLSGLLVFAMIAVMLAGEKAMLRAFAVMVYPLAAILAALSCYLIPQWQWPQLGSLEGGSFLNTVWLALPVTVFAFSHAAAISGFANVQRREYGEQAEAKSSLILRNTTVMLVGFVLFFVFSCVLSLSPAQLAEAKAQNVSVLSYLANITDNPVIVTLGPLIAFIAISSSFLGHFLGARESLKSLIAKPTGLSLAKADRLGIALMFFSIWGAAIINPGILGLMETLSGPVIAMILFIMPVVAIYKVEALARFRHRWANGFILLTGALAVSALIFSLLK

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Crispr_ID: NZ_CP038515_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_11

3004522-3004611

Orphan

Consensus_repeat	Method
CGAAAGGATCAAGAAACTCAAATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_11

>merge|NZ_CP038515|11|3004522-3004611|CRISPRCasFinder
CGAAAGGATCAAGAAACTCAAATGACCAAAATGATTGCGTTGACTGGTCTCATCATCAATCAGGCCGAAAGGATCAAAAAACTCAAATGA

>NZ_CP038515|11|11|3004522-3004611|CRISPRCasFinder
CGAAAGGATCAAGAAACTCAAATGA	CCAAAATGATTGCGTTGACTGGTCTCATCATCAATCAGGC
CGAAAGGATCAAAAAACTCAAATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_171282434.1\|3000439_3002446_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|350657
NZ_CP038515.1\|WP_010634617.1\|3013526_3013910_+\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|381150
NZ_CP038515.1\|WP_017409955.1\|3012695_3013415_+\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
NZ_CP038515.1\|WP_171282436.1\|3004977_3005757_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP038515.1\|WP_024943902.1\|3008285_3010388_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP038515.1\|WP_011705289.1\|3013922_3014663_+\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|377318
NZ_CP038515.1\|WP_171282432.1\|2993485_2994262_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211400
NZ_CP038515.1\|WP_171282437.1\|3006121_3006913_+\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP038515.1\|WP_011705279.1\|3003031_3004102_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP038515.1\|WP_024943903.1\|3007047_3008178_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP038515.1\|WP_171282438.1\|3010404_3011826_+\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|235570
NZ_CP038515.1\|WP_016350050.1\|2994839_2996552_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP038515.1\|WP_171282433.1\|2997670_2998477_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562
NZ_CP038515.1\|WP_011705278.1\|3002503_3003022_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_CP038515.1\|WP_029301485.1\|2994464_2994782_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
NZ_CP038515.1\|WP_010634619.1\|3011827_3012703_+\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NZ_CP038515.1\|WP_011705276.1\|2999907_3000348_+\|flagellar-export-protein-FliJ	unknown	unknown	gnl\|CDD\|235563
NZ_CP038515.1\|WP_011705275.1\|2998549_2999881_+\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|181599
NZ_CP038515.1\|WP_011705282.1\|3005784_3006054_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP038515.1\|WP_011705273.1\|2996544_2997606_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_171282434.1\|3000439_3002446_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|350657	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains. The flagellar hook-length control protein FliK is a soluble cytoplasmic protein that is secreted during flagellar formation. It controls hook elongation by two successive events: by determining hook length and by stopping the supply of hook protein. It contains an N-terminal domain that determines hook length and a C-terminal domain that is responsible for switching secretion from the hook protein to that of the filament protein, by interacting with FlhB, the switchable secretion gate.	8.09412e-21
NZ_CP038515.1\|WP_010634617.1\|3013526_3013910_+\|chemotaxis-protein-CheY	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.0096e-71
NZ_CP038515.1\|WP_017409955.1\|3012695_3013415_+\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	2.02038e-128
NZ_CP038515.1\|WP_171282436.1\|3004977_3005757_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	2.71315e-129
NZ_CP038515.1\|WP_024943902.1\|3008285_3010388_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP038515.1\|WP_011705289.1\|3013922_3014663_+\|protein-phosphatase-CheZ	gnl\|CDD\|377318	pfam04344, CheZ, Chemotaxis phosphatase, CheZ. This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterized by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site.	6.20702e-102
NZ_CP038515.1\|WP_171282432.1\|2993485_2994262_+\|hypothetical-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	8.1106e-09
NZ_CP038515.1\|WP_171282437.1\|3006121_3006913_+\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	1.56708e-74
NZ_CP038515.1\|WP_011705279.1\|3003031_3004102_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	2.47188e-174
NZ_CP038515.1\|WP_024943903.1\|3007047_3008178_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
NZ_CP038515.1\|WP_171282438.1\|3010404_3011826_+\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|235570	PRK05703, flhF, flagellar biosynthesis protein FlhF.	4.14457e-178
NZ_CP038515.1\|WP_016350050.1\|2994839_2996552_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0
NZ_CP038515.1\|WP_171282433.1\|2997670_2998477_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	1.4081e-57
NZ_CP038515.1\|WP_011705278.1\|3002503_3003022_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	4.46278e-87
NZ_CP038515.1\|WP_029301485.1\|2994464_2994782_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	6.81944e-35
NZ_CP038515.1\|WP_010634619.1\|3011827_3012703_+\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	1.71811e-107
NZ_CP038515.1\|WP_011705276.1\|2999907_3000348_+\|flagellar-export-protein-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	1.97716e-16
NZ_CP038515.1\|WP_011705275.1\|2998549_2999881_+\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|181599	PRK08972, fliI, flagellar protein export ATPase FliI.	0
NZ_CP038515.1\|WP_011705282.1\|3005784_3006054_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	2.52496e-27
NZ_CP038515.1\|WP_011705273.1\|2996544_2997606_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	4.91235e-156

>NZ_CP038515.1|WP_011705279.1|3003031_3004102_+|flagellar-motor-switch-protein-FliM
MSDLLSQDEIDALLHGVDDVEEEEIGAAGDPGVAQFDFSSQDRIVRGRMPTLELVNERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDVGFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPENLLVFVEDLPTFHAKMGRTKDNVALKITDKLKRPEGVKTEMHLVTRGGVRIDGEAELEELERSIEDQQR
>NZ_CP038515.1|WP_011705278.1|3002503_3003022_+|flagellar-basal-body-associated-protein-FliL
MADDNELTLKDPAAGKKKKLIMIIALAVIVLGGGGAGAWFMLSGGDKPAAEAAGEGKDAKPKEAAPQPSLYVGMPRPFVFNVSGGQRDRLVQIKIQLMVRGTADETLAKQNIPLIEGTLLRVFSAATSEQLMTFEGKEKLRKDSLEECRRVLNDLVSSPVIEQVLFTGFVMQ
>NZ_CP038515.1|WP_171282434.1|3000439_3002446_+|flagellar-hook-length-control-protein-FliK
MMQTLLTNSPAAPTATAADKSAVLTANQDGGEGALQSDGKVGFSEVMNRVQQADKVNAKADGKVANAGGKAPARPGAEQGNVGAADSNKPVPTAKGEAAKSLANEAEETAGADDKPQKGSEPDPALAPNDFLQRLQDALKQDTSLVAPPAINLVATAPVVETDGKMLPQEDADAESAEASATLTQPLAGSSDKQGATTSAAALARQAASLLTGETSTPVDAKAAQPDAVVTDDAALTAQLQGAGQEGGGKESGAGANADQQADNSGKETKGSKSELSTAERAALLSKVPAAALSEQGEDDTRIQLEGADKGAKPVVPPMAGKEESVKTAPLQATHQAVATQPGAARAFEEGVTRTDGGSSSAAADKAPTQTAAEGDGQSKPVAAKAEGQPAPAASSGAPAPATAPANEPVLVAPQQVLASSEPQGPQASLASLSAGLKQMEATERSDAPRARSEVKVDVKQKVADLARGGAQESSETTTTPESSRSQQVQQNSQPQAVGHDNRPAATEAAARREPANLPHLKLADPEAPAQLHQKVNLMLADKLQQAEIQLDPLGLGKMKIQIQMGADSQANVHFVVQHGQTREMLEQAMPRLRDMLAGQGIQLGQTLVQQQPQQQSQGQSAFAGQGQQGQKGSGSFAETGQTEAEVTGAGMRLSTESTNDSGIDFYA
>NZ_CP038515.1|WP_011705276.1|2999907_3000348_+|flagellar-export-protein-FliJ
MSKGLVMLSERLVEAEQQAALALAKAQQDLKIFMEQQDALNQYRQIYHQQWTDRGLQGIGAQQNSQYHAFINKLEQAATQQYEGVLQVRQALELRREEWLAAQQRRKAVELLLAKQAGREQQKAQRQEQKMLDEYAMLRRFHHSGL
>NZ_CP038515.1|WP_011705275.1|2998549_2999881_+|flagellar-protein-export-ATPase-FliI
MSGSLLNRLQGYRVRDIAPKPPVAGKLTRVVGLTLEAIGCRAAIGALCRIDTQDGSLEAEVVGFSGDRLFLMPSEQLKGVIPGARVVPITEEHGIPVGMNLLGRVIDGIGQPLDGLGPILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAVLTVGQGQRMGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEEILGEEGRARSVVVAAPADASPLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDGHIVLSRELADAGHYPAIDIEKSISRVMPMVTSPEHMELARTLKQFYSLYQQNRDLITIGAYSQGSDPRIDRAIIQKPYLDQFLQQGMREVIHYDAGLQALQLVAMPLMR
>NZ_CP038515.1|WP_171282433.1|2997670_2998477_+|flagellar-assembly-protein-FliH
MNNNKLRGYVRPDGDESQVQTWGWPEMEVEAEVETNALGLTPDWYRQEEEVPVEEPVEEPTPSITAEELEAIRQAAWEEGMAEGREAGYAKGLEEGKLEGLQQGHAAGLEQGKEEGLALGRELVDQQMSHWQGLIDRLANPLKELDGAVEQQLIALVMQLARALIRHEAETSPRLLLEALKQGLALLPAAELGVTLMLHPDDLARVEQAFGAEECAKRHWRLQSDPTLSPGDLQLATELSSIDLTLAGRIDQLLRNFLRDNASQDARG
>NZ_CP038515.1|WP_011705273.1|2996544_2997606_+|flagellar-motor-switch-protein-FliG
MADENKTQVTGNDITDSQRQILDQMSGMEMAAVLMLSLNEEDAAQIFRHLEPKQVQRLGMSMASMSDFSHDRVAAVHRQFIDDIQKYTNIGIGSEDFVRKALVAALGEDKASNLVDQIILGSGARGLDSLKWMDARQVASIIQNEHPQIQTIVLSYLEPEQSAEILSQFPEQVRLDLVMRIANLEEVQPAALQELNDIMEKQFAGAAGAQAAKMGGLKAAANIMNYLDTNIEGQLMDSIRESDEEMSQQIQDLMFVFENLIDVDDRGIQTMLREVPGDLLQRALKGSDDQMREKVFKNMSKRAAEMLADDLEAMGPIRVSEVEAAQKEILSIARRLADAGEIMLGAGGGEEFL
>NZ_CP038515.1|WP_016350050.1|2994839_2996552_+|flagellar-M-ring-protein-FliF
MANDQNGELLMNDEGSAALDENEQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPLGTYTTQELVKTLDYLDQQKIPYQVDGKSVLVSAENYSSIRLALTRAGLANATDTTSDGEDILLKDSSFGVSQRMESERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQELEYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEENSANGSNGGVPGALSNQPPAASNIPQQATGPNAETTASSSGRSRKEATRNFELDTTVSHIRRQMGGIRRMTVSVAVDYKASTAADGKVTREPRTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPELESVAEAPLYEQPWFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKPEGELDFDNHTVLGGDDELSLLAAQAESEPVFGVRDGHLKLPDLHRDEDLLKAVRALVANEPDLAAQVIKEWVANKDG
>NZ_CP038515.1|WP_029301485.1|2994464_2994782_+|flagellar-hook-basal-body-complex-protein-FliE
MEISASSLMQEMQALKVEAGATPLTQPGRQVTSDFGQLLQQALGNVNELQGAANDLRTRFDMGDNSVDLSEVMIAGQKSSIAFEATVQVRNKMVDAYKTIMNMPV
>NZ_CP038515.1|WP_171282432.1|2993485_2994262_+|hypothetical-protein
MKIRFLVIATAMALASAPSLADWAKVKAAASELGSAVSDTSKEAWQSVTDFSKATWASASQWGSEAFNTAGAWTDKSVATGKEWLTVADKKLDEMLEPKTADEARLALDTMADTALVRLFNQQPSAKLLFDKAYGYAVFDSRKFSLMLHTNQGAGVAVNRTSGKHTYMKMFGAGLAAGLGGKFYQQVILFEDKARFDAFVSQGWEATSEMGAVAGKESAELSAKYNGGMAIYQIGEKGLLLDANISGSKYWVDKDLTR
>NZ_CP038515.1|WP_171282436.1|3004977_3005757_+|flagellar-type-III-secretion-system-pore-protein-FliP
MKKANGLRPHGGLLVGLLSLLILCSPLALAQDGMSAVTIKTMADGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIANVQVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSFGLGAGG
>NZ_CP038515.1|WP_011705282.1|3005784_3006054_+|flagellar-biosynthesis-protein-FliQ
MSPETFIDVFREALWLVTIMVCAVILPSLCVGLLVAIFQAATSINEQTLSFLPRLIVTLFALGAGAHWGLQSLMDFFLLMVSQIPEVVG
>NZ_CP038515.1|WP_171282437.1|3006121_3006913_+|flagellar-type-III-secretion-system-protein-FliR
MTYTTALIMEWLSSIVWPLARVSGLLMVMAVFGSRLTPARVRISLALALTLMIAPLLPPMPKIELFSVGSFLVLGQQLLIGVALGLMTQFLMESFVMAGQIIAMQTSLGFATLVDPMNGQSAPVVGQFYLMLATLVFLAVDGHLIMLRMVVLSFDTLPVSDSGLSLPSIRDLIGFLGVMYQASLVMALSAIVALLLINFAFGIMTRAAPQLNIFSIGFAVSMMSGLLILWLTIGGFLGHFDSMWERVQETSCTLIGTQCLGGQ
>NZ_CP038515.1|WP_024943903.1|3007047_3008178_+|flagellar-biosynthesis-protein-FlhB
MADTDQERTEQPTGKRLQQARDKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVKVLTMGFTLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNTLMGGMNFSSEAMLPKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEGYPGGIIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKPEVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGTDEIAMKIREIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLKKFRRGRGRRPNPLAKDLPIPTEFRK
>NZ_CP038515.1|WP_024943902.1|3008285_3010388_+|flagellar-biosynthesis-protein-FlhA
MKLQASLGRIKEYKWLLTKGLGTPLLVLASLGMVVLPIPPLMLDILFSFNIALSIVVLLVAVYTRRPLEFAAFPTVLLIATLLRLALNVASTRVVLLEGHNGSAAAGHVIEAFGNVVIGGNYTVGIIVFMILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLINQEEAKKRRQDVTQEADFYGSMDGASKFVKGDAVAGIMILFINILGGFIIGMVQHQLTFGEAAQIYTLLAIGDGLVAQIPSLLLSIAAAIIVTRQNTDQDMGTAVLGQLFDNPKALIISAGILLMMGSVPGMPHLAFLSLGAIAAAGAWWLLRREKQLAAKAAKGELMPASTEQTHEQKDLSWDDVMPVDIIGLEVGYQLIPLVDRNQGGELLNRIKGVRKKLSQELGFLVPAVHIRDNLDLAPNQYRITLMGVSTGEANVYHDKEMAINPGQVFGQIQGVATRDPAFGLEAVWVAKEQVSQAQTLGYTVVDTATVVATHLSQILSNHAALLLGHDEVQQLLDMIGKHQNKLVEGLVPEVISMGNLVKVLQNLLNEGVPIRDMRTILQTLVEYAPRSQDPEVLTAACRIALRRLIVQEIAGPDPELPVITLAPELERILHQSLQAGGGDGAGIEPGLAERMQRSLVEATQRQELEGQPAVLLTSGILRNTLAKFVKNAIPGLRVLSYQEVPDDKQIRIVSAVGQN
>NZ_CP038515.1|WP_171282438.1|3010404_3011826_+|flagellar-biosynthesis-protein-FlhF
MKIKRFFAKDMRTALAEVKETLGPDAIIMSNKKVTGGVEIVAAVDYQSQVPGPKDAPVRRQLNDESVNISSAGRQMTRPAPSLAQEQNEHYADTLAALLARQQKLNPAQNSQGGQSGAPSAAASGAPRTLAEQGQWGAAPEPAKPKARAAAPGRAPQSPQRDQEMEGMRKEMASIRKLLEHQISGLMWQEVERREPMRALLIKELKKIGFDDAFADQLAGLIPEDMSIHQAMAQLAEVLTAQLKISEDEILRQGGAVALLGPTGVGKTTTIAKLAARFAMKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVRDAEELANALYQFRHRRLVLIDTAGVGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQEAVDHFRRIPLSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQLVGAAMGSLERETEEPYFWGTGFGEAEDSEFYE
>NZ_CP038515.1|WP_010634619.1|3011827_3012703_+|MinD/ParA-family-protein
MYMDQASGLRKMRQNNRVKVIAVSGGKGGVGKTNVTLNVAGAMAAQGKRVMVLDADLGLANVDVMLGLRVHRNLSHVLAGECTIDDIIVEGPYGMMIVPATSGTQSMVELSPVQHAELIRAFSEMKTQVDILLVDTAAGISDMVLSFTRAAQDIMVVVCDEPTSITDAYALIKILSKEHGVFRFKVVANMVRSLREGQELYAKLTRVTDRFLDTSLELVACVPYDTNLRAAVRKQKLIVEAFPKSPAALAFRALANKAASWPIPNQPGGHLEFFLENLLQKPVIAQEGSRE
>NZ_CP038515.1|WP_017409955.1|3012695_3013415_+|RNA-polymerase-sigma-factor-FliA
MNKAQAYLRHQDSYVLVERHAPLVKRIAQHLLARLPSSVLLDDLIQAGMIGLLEASRNFDGSKGASFETYAGIRIRGSMLDEIRRGDWVPRSVHRNSRTIAEAIENVEQAHGRDARDSEVAAQMGVSLGEYHAMLQDVSCGKIIGIEDLGVSEDVIGHPDDEPGSNGFDELAAERFQGALAEHIGRLPEREALVLSLYYDEELNLREIGEVLNVSESRVSQIHSQAMHRLRARLRDWHV
>NZ_CP038515.1|WP_010634617.1|3013526_3013910_+|chemotaxis-protein-CheY
MDKNMKILIVDDFSTMRRIIKNLLRDLGFNNTHEADDGNTALPMLKNGDFQFVVTDWNMPGMQGIDLLKAIRVDDKLKHLPVLMVTAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFERIG
>NZ_CP038515.1|WP_011705289.1|3013922_3014663_+|protein-phosphatase-CheZ
MKAKTSAMISLDQARMLVAHLEQGEFEQADTLIADACAPNAAALFDKVGQLTRQLHDSLQDFRLDPRIPDLATHEIPDARERLSYVIDMTDKAANRTMDAVEASLPIADRLNDNIQLVLPNWNALMSREMSVGQFKSLCHQLDDFIKASESDADKLRQLLTEILMAQDFQDLTGQMIRKVIKLVQEVETKLIEMLTMFGEASAEHSSRSLPVSGIEAEGPIMNPETRSDVVNGQDDVDDLLSSLGF

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Crispr_ID: NZ_CP038515_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038515_12

4730858-4730959

Orphan

Consensus_repeat	Method
AGCCAAAGCGCAGGATTACACCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038515_12

>merge|NZ_CP038515|12|4730858-4730959|CRISPRCasFinder
AGCCAAAGCGCAGGATTACACCAAGCATCGCCAGCGCATGTCCCTCGCCAAGACAGGAAATGACGGTCGTTATCCCAGCCAAAGCGCAGGATTACACCAAGC

>NZ_CP038515|12|12|4730858-4730959|CRISPRCasFinder
AGCCAAAGCGCAGGATTACACCAAGC	ATCGCCAGCGCATGTCCCTCGCCAAGACAGGAAATGACGGTCGTTATCCC
AGCCAAAGCGCAGGATTACACCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038515.1\|WP_171283147.1\|4728050_4729052_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP038515.1\|WP_171283146.1\|4723229_4723784_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP038515.1\|WP_011706581.1\|4727740_4727929_-\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|183328
NZ_CP038515.1\|WP_017411266.1\|4721011_4721695_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP038515.1\|WP_171283153.1\|4739550_4740627_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131197
NZ_CP038515.1\|WP_017410450.1\|4735959_4736250_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368828
NZ_CP038515.1\|WP_017781785.1\|4738709_4739486_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|274729
NZ_CP038515.1\|WP_171283274.1\|4736751_4737549_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038515.1\|WP_171283273.1\|4713138_4715103_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038515.1\|WP_171283151.1\|4736424_4736718_-\|lipoprotein-bor	unknown	unknown	gnl\|CDD\|368828
NZ_CP038515.1\|WP_171283152.1\|4737562_4738606_-\|StbA-family-protein	unknown	unknown	gnl\|CDD\|310773
NZ_CP038515.1\|WP_011706583.1\|4729051_4730821_-\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	unknown	unknown	gnl\|CDD\|183016
NZ_CP038515.1\|WP_171283144.1\|4715767_4717057_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP038515.1\|WP_171283145.1\|4718665_4720894_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|171438
NZ_CP038515.1\|WP_011706586.1\|4733760_4734255_+\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP038515.1\|WP_113994337.1\|4726982_4727744_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP038515.1\|WP_171283149.1\|4733248_4733767_+\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP038515.1\|WP_011706579.1\|4726125_4726770_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP038515.1\|WP_171283150.1\|4734377_4735886_+\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP038515.1\|WP_171283148.1\|4731019_4733311_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|236924

Protein	Function_ID	Function_description	E-value
NZ_CP038515.1\|WP_171283147.1\|4728050_4729052_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	8.34266e-174
NZ_CP038515.1\|WP_171283146.1\|4723229_4723784_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	2.52271e-83
NZ_CP038515.1\|WP_011706581.1\|4727740_4727929_-\|Trm112-family-protein	gnl\|CDD\|183328	PRK11827, PRK11827, protein YcaR.	4.72507e-22
NZ_CP038515.1\|WP_017411266.1\|4721011_4721695_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	4.66662e-22
NZ_CP038515.1\|WP_171283153.1\|4739550_4740627_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131197	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions].	3.3723e-89
NZ_CP038515.1\|WP_017410450.1\|4735959_4736250_-\|hypothetical-protein	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	4.20582e-32
NZ_CP038515.1\|WP_017781785.1\|4738709_4739486_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	8.26697e-26
NZ_CP038515.1\|WP_171283273.1\|4713138_4715103_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	8.59231e-47
NZ_CP038515.1\|WP_171283151.1\|4736424_4736718_-\|lipoprotein-bor	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	4.35801e-21
NZ_CP038515.1\|WP_171283152.1\|4737562_4738606_-\|StbA-family-protein	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	5.17157e-103
NZ_CP038515.1\|WP_011706583.1\|4729051_4730821_-\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NZ_CP038515.1\|WP_171283144.1\|4715767_4717057_+\|PAS-domain-S-box-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	4.60494e-46
NZ_CP038515.1\|WP_171283145.1\|4718665_4720894_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|171438	PRK12363, PRK12363, phosphoglycerol transferase I; Provisional.	3.9504e-124
NZ_CP038515.1\|WP_011706586.1\|4733760_4734255_+\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	2.23417e-29
NZ_CP038515.1\|WP_113994337.1\|4726982_4727744_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	3.45293e-154
NZ_CP038515.1\|WP_171283149.1\|4733248_4733767_+\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	4.38125e-46
NZ_CP038515.1\|WP_011706579.1\|4726125_4726770_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	3.35889e-165
NZ_CP038515.1\|WP_171283150.1\|4734377_4735886_+\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP038515.1\|WP_171283148.1\|4731019_4733311_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|236924	PRK11539, PRK11539, ComEC family competence protein; Provisional.	2.75002e-114

>NZ_CP038515.1|WP_011706583.1|4729051_4730821_-|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA
MQQETSQDSWPVFKRLLGYVRDRKLGLIGGIIGMLGYAAVDTTFVYSIKPLIDQGINGNDPTVLKWMPFFVLGIVALRGVANFLSNYCMAWVGNHVVMRLQQQVFNHMVAMPMSFFDRQNTGHLLSKVTYDASQVSSAASTTLVTLVREGATVIGLLGLMFWHSWQLSVIFLVVGPVVGIIIGLISRRFRQISRHIQQAVGDITTSTEQMLKGHKEVLMFGGQKVEEKRFFKVSNNMRQQTMKMVAADAIGSPVVQMVASIALAAFLYVATIDSVRSELTAGTFTVMITSMMMLLKPLKSLTDVNNQFQRAITACHSLFGLLDTEPEQDTGTRTLERARGEIEFRNVTFTYPTKDTPALHNVSFKVEAGKSVALVGRSGSGKSTIASLLTRFYDIEQGEILLDGVNIRDYRLSELRKQYALVSQHVHLFNDTVASNIAYAAEEKYSLDEIKQAARIAHADEFVSKMSNGYDTVVGENGASLSGGQRQRIAIARALLRDAPVLLLDEATSALDTESERHIQAAIDELCKARTSLVIAHRLSTIEKADEILVIDEGHIVERGNHAALMAQQGTYAQLRAIQFGHATAGGNA
>NZ_CP038515.1|WP_171283147.1|4728050_4729052_-|tetraacyldisaccharide-4'-kinase
MLERLWYAKSGWRWLLAPFALLFAIISGTRRYAYRHGWRKGYRASVPVIVVGNISVGGNGKTPVVVWLVEQLQARGYRPGVVSRGYGGKAPHYPYRLDAASTTAQAGDEPVLIARRCGCPVVVAPKRADAVRLLEQSGEVDIIITDDGLQHYALARDIELVVVDGARRFGNACLLPMGPLREPVTRLKRVDAIICNGGEPGRGEYPMQLVADSPRRVRDEAPLATPLTGPVDALAGIGHPPRFFATLEGLGYQLDQRVAYGDHHPFDRDELVGRFAGKPLLMTEKDAVKCRSFALDNWWYLPVSAELPASLLDTLLHKLGASGKGQGATKAQG
>NZ_CP038515.1|WP_011706581.1|4727740_4727929_-|Trm112-family-protein
MALDIKLLDIIACPVCKGKLHYNKAVHELVCRFDKLAYPLEEGIPVLLENRARPLSSDELSS
>NZ_CP038515.1|WP_113994337.1|4726982_4727744_-|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALQSGADRVIVATDDERVQQALAACAGQAGFEVCMTSKDHQSGTERLAEVCRHYGFAADTIVVNVQGDEPLIPPVIIRQVADNLAAATAPMATLSVPIQDAEEVFNPNAVKVVTDQEGYALYFSRASIPWDRDRFAASREQIGDHYQRHIGIYAYRAGFIQRYVDWAPSLLEQVEALEQLRVLWYGEKIHVAQALEAPPVGVDTQADLDKVRALLAN
>NZ_CP038515.1|WP_011706579.1|4726125_4726770_-|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVFLVDDHELVRTGIRRILEDVRGIKVVGEAQSGETAVTFCRQHHPDVILMDMNMPGIGGLEATRKILRIRPDVRIIVLTIHSENPFPTKVMQAGAAGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADENPFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLNINGDVELTHLAIRYGMLDADTL
>NZ_CP038515.1|WP_171283146.1|4723229_4723784_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTNIPNLLTFFRILLIPVFVILFYLPYQWSYLAAAIVFILAAATDWFDGYLARKLNQSTAFGAFLDPVADKIMVAAALVVIVEHYNTVWVTIPAMTMIGREIIISALREWMAELGKRSSVAVSWIGKWKTMIQMVSLTGLIWQYDIWMVWLAYVLLYVATVLTFWSMFQYMKAAWGDLTYHSRF
>NZ_CP038515.1|WP_017411266.1|4721011_4721695_-|helix-turn-helix-domain-containing-protein
MKINDRIKETRKRLGYSQETLGSRVGVSRVSISQWERGENTPNGRYLNELAVALGVTVDWLLTGSGDFPQLPAEHLILGYHNVEPAVISQRKRIPVISYVQAGNWREMCEQATTFDGNVEYVTASVDIGSCGFGLWLRGDSMLPQFKEGDLIIVDPDEAPQPGDFVVVKNGSNEATFKKYRPRGIDENGQEVFELVPLNDDYPTMYSDRQYIQIIGVMVEQRIFRKR
>NZ_CP038515.1|WP_171283145.1|4718665_4720894_-|sulfatase-like-hydrolase/transferase
MIIIVVSILVFFILCISTTRCRGLLISVAVLYIALSGLYVVSDMFTGAGFNTSVMYHLYTGVQGAGFSEYVKEISYGAGFVFCAIIFILSQIFIKKSKKGLMKVSPFISFSLSFLLFLISPWVNNYYEQARLYVSGVFDKRDVGDEYVVNKSKIKNKKNIVLIYAESLERTYLSESEFPGLISKLVPIINEGIDFTNIDNDGGGWTIAGLVNSQCGLPLSLPGGQGNNMGAISQFMPDAYCLGDILKDHGYELKFIGGAKSDFAGKGTFIKQHGYTSVDRDYFEKIIPPDNMNYSDWGIHDDHLLDYAYESFVELSKNKKPFVLSLLTLDTHHPWGHIPSRCINDKPYGDGTVNILNAVQCSDKLLAEFISKIQSSEAYKDTIIILQSDHLAMSNDALSILNKDPRSRKNLFVVLGANLEKKKVDRPGLLIDVGATILSFLGNNDGLGFGRNLLEDYYSGMAYAKFNKGDKALSSYSNFSKNTWSFSTFSHGAKIKDNKVFLAGDKYYSLPALFVLKGEVDIDNVYFDEFNKHYLSLNNGTSFVIVNSCNELGVKSDGGCFVFGEKNKAVSIQFFKNTASIKDDFFDKQKMTLITSPVSFEGIYSFNSSNGVSVDSIYIDGDYKAIGAGVNIIKNNFDGSHEIKNYSNCNDIKKISLEKKMYKSAFISFQYDTCMGTLGAVFPLSEKIKKNQFKSGEYVLLKVDSEMFKNDVLGVIRAPIKAGDVMAFDNNAEVVDLNRPIF
>NZ_CP038515.1|WP_171283144.1|4715767_4717057_+|PAS-domain-S-box-protein
MFNAKLKNELAAERARALQSEALSHAMHGHLPMIEFTPEGHILDASPLFLSTVGYSLKEIVGQHHAIFCRKEDSDSPSYREFWRKLSNGHSQQGTFQRVGKHGQEIWLEATYFPVSQDGKVSKVVKIASDVTWQHDLLMTQKAIFEALDRSLAVIEFEPNGVIINANRNFLDTMGYRLDEIKGRQHRMFCDESFYREHPDFWQELAQGTFKSGRFQRFDKQGHEIWLEATYNAVRGSHGKVIKVIKFASNITSQIKKDQAVQNVAKVANETSVTTKASAIKGEDMLTTVVSTSDNIVTQMENASTLMSKLHAQSQNITAIVSTISSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSQSTNEIASVVSQNQQLTHQVSEQIQSAADGAIHGQRQIDDVAKVMQEIRNGAEEVSTIISEL
>NZ_CP038515.1|WP_171283273.1|4713138_4715103_-|methyl-accepting-chemotaxis-protein
MLVAVPLIVASIVSLWSSQAQLRAQEKVERFNQAHLIFKETRYDLVQIQQFITDAAVTGNTEEGLAEAATFRDTALQNLDTLMRSLPDLSDELLPMQETVKGLYEKGAAMVDTYSRQGQAAGNLMMSSQGGFDHMVISINERLERINHQLDSRITSAVASRDEAKELALLMGLVAGLVSLLFVALAYFIQYRHLMRTLGGEPDYAARVAAEIAAGNLTVTIQTRSADNHSVLGAMRLMAAQLSRHMRQIDLRTRQLAQSSYQISDISRTITDASQLEQHHSTEVTRASNDLSCAAEAVSGLASQVGQQAELAYQSAHRSTRVMSENIEEMRHAVTEAQQAEQKTRQLSEASQRIQVITQSITAITEQTNLLALNAAIEAARAGEYGRGFAVVADEVRKLANNAGQATKEINEIVTTLSRLIGENESSVKSVIARTHLTMDKAHEASQSINGLMTEIERSVGAADQIRGTSDEQMGKLSSLNAHLHDLLHALAENTEKVQTTGIISRTLYQESSQLRDIMEQFRFEAESGADRTEHELRRAPRMYQHMMVKVQAGGGFHESITEDFSVTGLRLRTVQPLALYKRAEVELKIYTPKPSIDLYRNQTPLTIKARVMWSRQAEEGEVYGLEFIEVAPQARSQLEACFKHYALEPTYTG
>NZ_CP038515.1|WP_171283148.1|4731019_4733311_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLVFLECRRIRQPALYESFGHIETLLNTCTMDLRLLSFALGASSSLLWPWLPSWEWGGLMLLLAFPLAGYRCWRLLFLLCGILWMQGSLHYRLAWLDQLGKKTSHIITAQLQSAEPEGDKFIRLVLRVNRLDEQALTPAPLVRINAYQALPAMTAGSRLTLVVSLKPAHGLANEAGMDGRRLLLGKGITATGNLRRVIQIEPAQTGLRERWLARAAASWQDLSQGPLLAALTFGEQGGITDEQWSLFRGSGLTHIIAISGQHIALVAVLGWWLGRLFGLRGAILVALLFAALYSWLAGFAVATERALIMVLVWSLLRWRRREWPAHRIWLWAFVVLTLWDPFALYSAGFWLSFLAVALLLVASLLEAKPGLIRLQGLLLLGLLPLQLALFEGIAPLSLLLNLLALPLFCIGIIPLALIGVLLAPLSGDLAHLLFWLADVGLQWVLWALARLASQWQLWWPVPGWVLPLTALLTLLWCAWHVPGGRPLLLPGGVALLLAAWPAPTHWQLRVLDVGQGLAVLITRGERGILFDTGDRYPGGYNMADAVILPLLNRLDVRVLDYLVISHKDRDHAGNRRAILQALPVRHELSSFDFGRFTTLCRRGQQWRWQGLEMAVLWPQQPGPGHNNDGCVLQIRDGARRILLSADIERQAEQRLLALEGDGLASTLLVSPHHGSRTSSTAPFVAAVAPRYVVHSAGFMNQWGFPRPEVVARYQEAQQWVTGLDGEILVEPTPDGLRIRAEREQGPWFRRNGDWWRPAFWPDR
>NZ_CP038515.1|WP_171283149.1|4733248_4733767_+|DUF2062-domain-containing-protein
MPKRLIQRWLPDPATLKEHKHLRLFGKLLLDANLWHLNRRSAAGAFAVGLFMAWVPLPCQMLLAAGGAIACRVNLPLSVALVWLSNPFTMPPLFYGAYLTGCQLLGQSSQHIEIEFTWAWLVSVFETVAPPLLLGSLVLALLSALIGYALIRTCWRISTVRQWQKRKVARAC
>NZ_CP038515.1|WP_011706586.1|4733760_4734255_+|DUF2062-domain-containing-protein
MLNRWFARFKIDPDTLRQQKWFSLFGERLLAPALWQGGPRALSGAVAAGIFACWFPIPMHSLIAVGLALAFSLNLPLALLAVWFNNPLTLPFMYLYAYRTGCLVLHKTPEPFHLSWTLHWLEHEAATLVPPFLLGSLLLAVLTAASGGLLTLLLLRLGKLVRSR
>NZ_CP038515.1|WP_171283150.1|4734377_4735886_+|DUF853-family-protein
MAEPLTLAHANGHPLALLPAMANRHGLITGATGTGKTVTLQVLAEGFSRLGVPVFLADVKGDLSGLGAAGAGSAKLDARQAQLGIPAPTFAASPTLFWDLFAEQGHPVRATVSDMGPLLLARLLGLNDTQSGVLELVFKVADDEGLLLLDLKDLRAMVQFAGDNAKSLTTRYGNVSTASIGAILRNLLTLESAGGDHFFGEPMLDIQDLLQTDEAGHGHINVLAASKLTQSSRLYACFLLWLLSELFEQLPEVGDPDKPVLVFFFDEAHLLFNDAPKALLEKIELVVRLIRSKGVGVYFVTQSPADIPDSVLGQLGNRVQHALRAFTPSDQKAVRIAANTLRANPAFDAAGVITELGVGEALVSLLDEKGRPSMVERAFIAPPASRIGPLSDAERRALIQGSLLHGRYETPEDRESAFERLNGGKGTTTGEQGSEPSSNGEGGLLDALNGILFGRTGPRGGQHDGVVQTAAKSVTRTIGSEVGRQLVRGVLGSLLGGGKRRR
>NZ_CP038515.1|WP_017410450.1|4735959_4736250_-|hypothetical-protein
MKKMVLTAAVAMMMAGCAQQGFTVHSGNAVKPTKEVTHHFFISGLGQSKTIDAAAVCNGADKVVRVEAQHTFLNGLLGAVTFGVYTPREARVYCAG
>NZ_CP038515.1|WP_171283151.1|4736424_4736718_-|lipoprotein-bor
MKKIVWMACSVLLLSGCAQQTFFVHEGNPGQPTREVSHDFVLAGIGQSEMVDAALACHDDPKKVVRVEMQQSPQDTLMTVLTLGIYTPRTARVYCSL
>NZ_CP038515.1|WP_171283274.1|4736751_4737549_-|hypothetical-protein
MTFSIYMDPGALESDRYAVGVLQNWYQRARKIQDGSEEFDFSKSRFHKDIYLSGMFMYVLAPNLCKAIANALGPEQVSMTTLRHAFASCGFNLGEGSASVQPAADVMIEQIVARLSPRLGQGDTGGLVDEIVQRLGQQAAVPSSDSLVEEIVSRLGEQQPTELWDELRQGMPAHLDHEQLAEAIVGKLPSAAGEQDLAPLQSSIQQLSRQLEEQSRLIREQHRLIQRLASAPGRQMTAAGDTEPLVEDLSNQVANMKKVKAKGIF
>NZ_CP038515.1|WP_171283152.1|4737562_4738606_-|StbA-family-protein
MSEVIKMAIDDGSTNVKVSWIENKVLKTIISPNSFRKDWKSAALRKDKKIYNYEIGNTKYTYDATSDKSLATTHVEYQYDDLNLLSVHHALLQTGVTPCDVAITVTLPITEFYNPDDCQRNEDKIEKKRRNLMRAISLNKGELFNIVSVEVMPESLPAALSRLIGSGCNEFTKTLVIDCGGTTLDMGIIVGEFDDVSDVYGNNEIGVSMVTDAVRKALAAADSDSSYLVANEFIKRRHDMSFVRDVVNDESQIPKILEKMQNKIDELGSQVAHEAKKFAKNPNRVYLVGGGASLIHEAIKNAYPTLGDRVELLDDAQSALAREICLYTTEEEEVYREAAVMAEVGDE
>NZ_CP038515.1|WP_017781785.1|4738709_4739486_-|alpha/beta-fold-hydrolase
MRRNQVMKSNGLALRSAGEGPLLLLLHGLGSSSLDWQAQIERFSEHYRVVALDLRGHGQSMQEGPFDVATLAADVVNWLDEQPEPAWVVGLSLGAMVALELALQLPHKVQGLVLVNGFSEFLLETPKEQERFAQRLKWLRWFGLRPLAWWLGRELFPGPDLAQVRHTFRLRFVRNKKKTYKALLEALPGWSVRARLGNIWQPVAIISTSHDYLPLAKRVEQFASLPNATIHTPNGHHAWPAEDPSGFNHLLHRILETH
>NZ_CP038515.1|WP_171283153.1|4739550_4740627_-|molybdenum-ABC-transporter-ATP-binding-protein
MSDTDKAQPLQLKVRRAFGAFTLDCELALELGGILGLFGPSGCGKSSLLRIIAGLDRAPGDKLNWQGRALSELLPEARRIGLVFQDSRLFPHLSVLGNLQLAARKGRGRWQPEALATRLGFAELLPQPAHGLSGGQRQRVALARALLAEPDLLLLDEPFSALDRRSRIHQAHVLKGLQQESGIPMIFVSHAMEEVSLLCDQLVLLADGRVEAQGRPSDIFARTDLSLASRDDAGVMLAATLSHYDNDEQMATLQLGEQQLRVTMTQVPDDGGPLQIKVAGRDVVIATAPIEHSSLSNCLTTRLLAEREVRPGQTLLQLALGQQILLARITSRSARRLALAPNQQIYAYIKAVSLVSEG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP038515_3	3.1\|772804\|32\|NZ_CP038515\|CRISPRCasFinder	772804-772835	32	CP035920	Vibrio cidicii strain 2423-01 plasmid unnamed1, complete sequence	8649-8680	9	0.719

1. spacer 3.1|772804|32|NZ_CP038515|CRISPRCasFinder matches to CP035920 (Vibrio cidicii strain 2423-01 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aagccagccggccccataagccatcgcctgcc	CRISPR spacer
gagcaagcccgccccataagccattcggagct	Protospacer
.*** **** **************.    **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

484531 : 492066

Staphylococcus_phage(50.0%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016351731.1\|484531_485002_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-30	48.7
WP_029304288.1\|485200_486436_+\|protease	serine protease	I6WTR7	Cotesia_sesamiae_Mombasa_bracovirus	1.5e-08	26.6
WP_016351734.1\|486499_487609_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.9e-65	39.0
WP_171281463.1\|487750_488404_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.3e-19	35.9
WP_171281464.1\|488458_489568_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.3e-48	34.9
WP_010675395.1\|489664_490114_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_171281465.1\|490248_490728_-	hypothetical protein	NA	NA	NA	NA
WP_011707102.1\|490812_492066_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.3e-100	53.5

DBSCAN-SWA_2

2396573 : 2406509

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017410638.1\|2396573_2397320_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.2e-70	54.1
WP_011704775.1\|2397324_2397942_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-34	46.4
WP_016349540.1\|2397938_2398520_+	DedA family protein	NA	NA	NA	NA
WP_029302383.1\|2398530_2399571_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0A7NU10	Lactobacillus_phage	8.6e-13	35.6
WP_011704778.1\|2399618_2400602_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.7e-34	34.1
WP_024946180.1\|2400686_2401700_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.1e-108	58.3
WP_005309452.1\|2401879_2402095_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_016349543.1\|2402110_2402554_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.7e-26	48.6
WP_024946181.1\|2402642_2404430_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	5.2e-74	41.1
WP_073348937.1\|2404643_2406509_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6

DBSCAN-SWA_3

3531377 : 3567834

Cronobacter_phage(12.5%)

plate,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005299981.1\|3531377_3531809_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_011705715.1\|3531812_3533579_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_171282631.1\|3533542_3534541_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_171282632.1\|3534597_3535848_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_171282633.1\|3535847_3536363_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_029301183.1\|3536365_3537700_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_010634228.1\|3537722_3538502_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_171282634.1\|3538521_3541164_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.1e-92	32.8
WP_171282635.1\|3541166_3542705_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_171282636.1\|3542704_3543310_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_171282637.1\|3543318_3544764_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_171282638.1\|3544805_3548291_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_171282639.1\|3548337_3549768_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_017411057.1\|3550025_3550313_+	type VI secretion system PAAR protein	G4KK81	Yersinia_phage	2.3e-08	39.4
WP_171282640.1\|3550323_3552645_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.1e-34	27.3
WP_171282641.1\|3552648_3554337_+	LysM peptidoglycan-binding domain-containing protein	B6D7J9	Listeria_phage	6.3e-05	46.2
WP_171282642.1\|3554333_3554867_+	hypothetical protein	NA	NA	NA	NA
WP_171282643.1\|3555083_3555578_+	hypothetical protein	NA	NA	NA	NA
WP_171282644.1\|3557781_3558393_+	hypothetical protein	NA	NA	NA	NA
WP_164672918.1\|3558764_3559208_+	hypothetical protein	NA	NA	NA	NA
WP_171282645.1\|3559332_3559746_+	hypothetical protein	NA	NA	NA	NA
WP_171282646.1\|3561542_3562395_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-19	40.5
WP_171282647.1\|3562520_3562877_+	hypothetical protein	NA	NA	NA	NA
WP_171282648.1\|3562873_3563335_+	hypothetical protein	NA	NA	NA	NA
WP_171282649.1\|3563531_3563900_+	hypothetical protein	NA	NA	NA	NA
WP_171282650.1\|3564338_3565130_+	hypothetical protein	NA	NA	NA	NA
WP_017411050.1\|3566098_3566962_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.3e-27	31.2
WP_005300025.1\|3567069_3567288_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-17	63.2
WP_005300028.1\|3567516_3567834_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.4e-14	49.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP038515

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection