CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP038443	Aeromonas media strain R1-18 chromosome, complete genome	11 crisprs	csa3,DinG,WYL,DEDDh,cas14j,cas3,c2c9_V-U4	0	1	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP038443_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_1

383589-383699

Orphan

Consensus_repeat	Method
ATCCATCACCCCGAGACGGGGCAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_1

>merge|NZ_CP038443|1|383589-383699|CRISPRCasFinder
ATCCATCACCCCGAGACGGGGCAGCCTATGGTCGTGTGATAACGAGCGCATCGCCCTCCCTTTCCACGACTACCCCGTCCAAGCCATCCACCACCCCGAGACGGGGCAGCC

>NZ_CP038443|1|1|383589-383699|CRISPRCasFinder
ATCCATCACCCCGAGACGGGGCAGCC	TATGGTCGTGTGATAACGAGCGCATCGCCCTCCCTTTCCACGACTACCCCGTCCAAGCC
ATCCACCACCCCGAGACGGGGCAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171272507.1\|378633_379188_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP038443.1\|WP_171272506.1\|377633_378608_+\|ChaN-family-lipoprotein	unknown	unknown	gnl\|CDD\|350609
NZ_CP038443.1\|WP_171272514.1\|386052_387051_+\|NAD-dependent-epimerase	unknown	unknown	gnl\|CDD\|187563
NZ_CP038443.1\|WP_171272517.1\|393493_393829_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_025328092.1\|379227_379632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_171272516.1\|390515_391361_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP038443.1\|WP_171272512.1\|383782_384391_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP038443.1\|WP_171272503.1\|365498_367265_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374521
NZ_CP038443.1\|WP_171272504.1\|370384_373846_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223664
NZ_CP038443.1\|WP_171272510.1\|381773_382805_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP038443.1\|WP_005329110.1\|391692_393360_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP038443.1\|WP_171272508.1\|380256_380769_-\|heme-utilization-cystosolic-carrier-protein-HutX	unknown	unknown	gnl\|CDD\|274986
NZ_CP038443.1\|WP_171272518.1\|394091_395447_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP038443.1\|WP_171272505.1\|373928_375071_-\|3-phenylpropionate-MFS-transporter	unknown	unknown	gnl\|CDD\|236856
NZ_CP038443.1\|WP_171272513.1\|384694_386056_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NZ_CP038443.1\|WP_171272519.1\|395514_396333_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP038443.1\|WP_171274270.1\|388788_389142_-\|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|226461
NZ_CP038443.1\|WP_171272509.1\|380937_381777_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238569
NZ_CP038443.1\|WP_005329149.1\|379702_380260_-\|heme-utilization-protein-HutZ	unknown	unknown	gnl\|CDD\|200361
NZ_CP038443.1\|WP_171272515.1\|387110_388811_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171272507.1\|378633_379188_+\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	2.92239e-52
NZ_CP038443.1\|WP_171272506.1\|377633_378608_+\|ChaN-family-lipoprotein	gnl\|CDD\|350609	cd14727, ChanN-like, ChaN is an iron-regulated, heme-binding protein. This family represents a domain found in ChaN, a heme-binding/iron-regulated lipoprotein from Campylobacter jejuni. ChaN, possibly involved in the uptake of heme-iron, contains a pair of cofacial heme groups situated between two ChaN monomers. A single tyrosine residue contacts the heme-bound iron atom while the heme-binding regions of each monomer also have contacts to the heme in the complementary monomer. ChaN presumably associates with an outer membrane-associated receptor, ChaR. Campylobacter jejuni is an important cause of food-borne illness, and is dependent on iron uptake from the host. ChaN like proteins are related to the Tiki/TraB like family of proteases. Proteins containing this domain also include protein reticulata-related from Arabidopsis which may play a role in leaf development.	1.71509e-69
NZ_CP038443.1\|WP_171272504.1\|370384_373846_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223664	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only].	8.99653e-64
NZ_CP038443.1\|WP_171272503.1\|365498_367265_-\|hypothetical-protein	gnl\|CDD\|374521	pfam16403, DUF5011, Domain of unknown function (DUF5011). This small family of proteins is functionally uncharacterized. This family is found in Bacteroides, Prevotella, and Parabateroides. Proteins in this family are around 230 amino acids in length.	0.000143238
NZ_CP038443.1\|WP_171272516.1\|390515_391361_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.68512e-31
NZ_CP038443.1\|WP_171272512.1\|383782_384391_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	1.25623e-38
NZ_CP038443.1\|WP_171272514.1\|386052_387051_+\|NAD-dependent-epimerase	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP038443.1\|WP_171272513.1\|384694_386056_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP038443.1\|WP_171272510.1\|381773_382805_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.09094e-78
NZ_CP038443.1\|WP_005329110.1\|391692_393360_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP038443.1\|WP_171272508.1\|380256_380769_-\|heme-utilization-cystosolic-carrier-protein-HutX	gnl\|CDD\|274986	TIGR04108, Heme_utilization_protein_HuvX, putative heme utilization carrier protein HutX. Members of this protein family are HutX, found paired with HutW in some heme utilization loci although not shown directly to be necessary for heme utilization. This protein is homologous to the heme carrier protein HemS, while its partner HutW is homologous to (but does not complement) HemN, the radical SAM enzyme oxygen-independent coproporphyrinogen III oxidase involved in heme biosynthesis.	8.411e-88
NZ_CP038443.1\|WP_171272518.1\|394091_395447_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	2.3654e-173
NZ_CP038443.1\|WP_171272505.1\|373928_375071_-\|3-phenylpropionate-MFS-transporter	gnl\|CDD\|236856	PRK11128, PRK11128, 3-phenylpropionate MFS transporter.	3.09033e-123
NZ_CP038443.1\|WP_171272519.1\|395514_396333_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	5.34902e-143
NZ_CP038443.1\|WP_171274270.1\|388788_389142_-\|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein	gnl\|CDD\|226461	COG3952, COG3952, Predicted membrane protein [Function unknown].	9.53065e-35
NZ_CP038443.1\|WP_171272509.1\|380937_381777_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238569	cd01149, HutB, Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	6.08077e-71
NZ_CP038443.1\|WP_005329149.1\|379702_380260_-\|heme-utilization-protein-HutZ	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	3.30139e-108
NZ_CP038443.1\|WP_171272515.1\|387110_388811_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.29826e-51

>NZ_CP038443.1|WP_171272510.1|381773_382805_+|iron-ABC-transporter-permease
MMRLPLPWLLALTGCTLALLLVGSLATGPMSLSFAESLQALFAGKESGIEAHKLLIVQEIRLPRTLLCIAVGGILGICGAVMQGLFRNPLADPGIIGVSGGAALGAALAIVLLAPLGQQLQSLLGLGLLPLLAFLGGALTTTLVYLLGTREGGTSVTVMLLAGVAITALSGAVIGLLTYLADDQMLRNLSLWQMGSLAAGKPVDVGLALLTLVSLLWLFMRDANPLNALLLGEGEARHLGVNVQCLKRRLILLTAAGVGVAVAVAGMIGFVGLVVPHLVRLLAGPNHVRLLPLSALLGAALLLGADMLARTLLAPAEMPVGIITALLGAPFFIWLLIKSRRTL
>NZ_CP038443.1|WP_171272509.1|380937_381777_+|ABC-transporter-substrate-binding-protein
MGRRFALALSLLGCSALSLPAAAQERIVSIGPATTELIMALGGEQSLVATDVSSPEPKNLPRVGYHRALAAEGILSLAPTRLVGSDEMGPPPALEQLRRAGVEVTVLPTAPTLANLNERIDVLAGLLGNQAAGTRLKAEIAVQSDQLAAQAKQNKSLRVAFLLLHKGQPTSIAGGNTTASALVTLAGGINPVARLHDYKPVSTESLIELQPDLVLVSGRDWQQYQSVDSVLAQVPALAATPAGKNRAIHAIDGHALQGGLSLRSLQQANQIAQWIKQGS
>NZ_CP038443.1|WP_171272508.1|380256_380769_-|heme-utilization-cystosolic-carrier-protein-HutX
MSIAQRIHALLEQDPSAHPSSIATELAVSEWEVVRHLPAELMTLVPSDQAEALLADLASWGQVTTIVESDGSIFEVKAPFPKGKTARGYYNLMGRDGEMHGHLKLDNVVCIALVSKLFMGKEGHSFQFFGHSGRCIFKIYLGRDEQRQLLPDQVERFKALRHQYQEEVKA
>NZ_CP038443.1|WP_005329149.1|379702_380260_-|heme-utilization-protein-HutZ
MSERQERLQNRLQPEIREFRDGCRTLQLATVDGEGNPNASYAPFVLQEDGYYVLISEIARHARNLQQVPKVSLMLIEDETGARELFARKRLTFDAVAEVVARDDERWGKAIAALEGRFGDIVKGLSNLKDFVLFRLKPEQGLFVKGFGQAFRVSGDELVDFVHLVEGHKRVDNGAELTSETDAPV
>NZ_CP038443.1|WP_025328092.1|379227_379632_+|hypothetical-protein
MRLFSAVALVLLLPAITACSGMPGTTPDGPAPLFHTNINEEGSKRFTFEAAPLDVLPSRLQEDDSRLSRNSKSLLERREALQDEQLTETLAARNYCRTGYIVLSQTSWKIRGECNETATQADRDAFPNKASWQE
>NZ_CP038443.1|WP_171272507.1|378633_379188_+|cysteine-hydrolase
MDVLLIIDVQQGVMKATHHQQPQVLANINRAAAHVRQQHGRVIYIQHDDLPGGELEPGTPGWQLHPALQPAKGDSRVRKTACDSFLETELAFLLAEQSVDRLILCGSNTDFCVDTTVRSAAAHGFEVLVLQDGHTTADRPHLSAEQIIEHHNWMWRHLDLPEGRRITLLTTDQLLEAAQPALAC
>NZ_CP038443.1|WP_171272506.1|377633_378608_+|ChaN-family-lipoprotein
MTRRLPLLALPLLLAACATPPQSEVPQTLYHYQLGEGTDDRPLSLAQAVDRVRDADIVLVGELHSHPAVHLLQANLLAELAGMSRVDGRALVLSMEQFTRADQPVLDAYLAGRIGESTLIRDGHAWPNYPSDYRPLVEFAKAQQLTVIAANAPKPLVSCVGQEGPEWLDKLPASRRSQLARELTLGDDGYRQKFMASMHHGDADGNARRFAAQTSWDDTMAESMVDYLEQHPGRRIMHIAGNFHVEGGLGIASRIASRNPALRVALVVPETGSQDGKAAPGRSADVRVHIAPLPERWLNAAEMKQDMGALHQSRSRDCSQWLQP
>NZ_CP038443.1|WP_171272505.1|373928_375071_-|3-phenylpropionate-MFS-transporter
MPAFSWLALFFGAFYFVYGAYLPFWSLWLEGIGVSAEQIGLLLGVGMAIRFAGNLMVMGRVKGAGQLLPVTRLLCLLSLLAFLGFYLSHSLWWLVVLTLVANFIYPTLMPMGEALATRMVVQTHLDYGKVRLCGSFAFIVASTLVGALVSNFGSDWVLHTMVAGLLAMLALSALPLRPVPQELKGERARASLLVTLKSAPVRRFLLITALLQGSHAAYYGFSAMYWKGVGYSGTLIGYLWALGVVAEIAMFAADKRFFHRFGAQTLFLVGAVGCVVRWVLLGASTELAVLVLGQLLHGVTFCISHLGAVRFMTRQLPAEQQIPTQALYAALGLGMTVAALMAICGVLFEPLGGGIFFIMVLVVLPVFVLRLRGEHEGAAA
>NZ_CP038443.1|WP_171272504.1|370384_373846_-|hybrid-sensor-histidine-kinase/response-regulator
MHQGWLLIGLSLAYLGLLFLIAYVADKSKRRRLKGQPLLYSLSLAVYCTSWTFFGTVGQASESPWSPVPIYLGPMLVFLFGWRLLARLILVAKREHITSIADFIAARYGKSQRLAMVITLIAVMGILPYLVLQLKAIVTGLDLLMANSVPVGPTGNTAELALGVALLLALFSILFGTRNLDATEHHRGMVVAIAFESVVKLLAFMAVGGFALWLIIARPSEARTLVAGHFLDAVVAVSPGSLLELAIYTLVAMCAVICLPRQFHVTVVENNQGQDLHWARWLFPLYLFLMGLFIWPLALAGKQWVGADMASDTYVISLPMSLGFDGMAMLAFLGGTSAATGMVIVCTIALAIMVSNDLVLPVLLRRFWQQGRDERLMRLLLQVRRGAILLILLAAWVLYLWLGDLTSLSRIGYLSFGAVAQFAPALLLGLYWRHGNRKGVYLGLSLGVSLWFVTLLAESGLLAGSPLEALLAPPDWPAFRDLSLGAWCIFLSLLLNLAGYVAGSLLSRAAVSERLQAANFVGKPSRDTTALYQARVSVKELEMLAARFVGSSRVKRAFGRFAGERGGTLAPQMQASADLIAHTERLLAGVFGTSSARLVLASALQGRNMQLEEIATIVDEASDVFRFNRGLLQGAIEHMGQGISVVDRELRLVAWNRRYIELFHYPHGLIQVGRAIEEIIRYNAQQGLCGPGDIEAQVARRVAFMKRGSPHVSARERPDGRVIEMQGNPMPAGGFVMTFTDITPFRAAERVLREANEHLEARVAERTHELSELNRQLLLVNQQVERANHSKSRFLAAVSHDLTQPLNAAKLFTSSLLEMLPPEDEPARIARHIDDALGATEDLITDLLDVSRLEAGKFKAKKLDFALRDMFDNLKAEFGVLAQAGGIQFSVVESRLAVYSDVRLLRRVLQNFLTNAFRYNPGGRVLLGCRRLGDKVRIEVWDNGPGIPLDKQEAIFDEFSRLDHSRTAREQGLGLGLAIARGISQVLGHQLSLRSWPGAGSVFAITLNLATRPVMPSQVAAPVVRDSQLEGIRVLCIDNEEEILIAMASLLGRWGCEVRCAQNQEQALSLIGDGFLPQLVLSDYHLDDGKTGLQALHMIRLAHGNGIGGIIISADRKSELQTQIREHGFGYVSKPVKPLKLRALMNSLLLPIQ
>NZ_CP038443.1|WP_171272503.1|365498_367265_-|hypothetical-protein
MKNHHTLLRARVPLHGWVLLAPLAMAQQSSTTGAFRKDNSAPQIYSQEGLVNNFAQMLPLGATFSPLLTAWDAEDGDLTTRISQKSTVNTQVPGSYVAQYQVKDDGLPAEDGFKGWGSITTTFSLPVTIYDPARELPARMLVLGTLWDEGPVINDTLFMVVGDALSRPFRINGDSLPLLGERLSIRTFQVKEGHWGGNNRQFALLLRDPDSGEVLYDGPLTFSGGTTFTPSAPIPVLADRDYQFTLRYLAGSDRQGFKRNEADQFWLGAEGVQEQALYPHAQVLPDPANRLAFDPGLSRPLKEKLLSSAGGGEVLHVRRLPGAEAQALSYVITDPALATLQIQPGDGEDRLVLSGLQAGETNLAILANGERVDLVRLVITAPKAVTLSYSYIAYPGETQTHLWDDGVLIQRDITRRYAPYNLQLSWIDNGVLVHEWDRDGDGESYEADRSEREAPFDEGWIPNRGQVFSNLYVIRSYKDPARACSGSGAGSSMGIGPDDAPPRAGYRAACPGNATELGQSLTLAHELGHNLGLWHTGNTDPYRNSNLMTAGRQEGIFFASQWRTIHQTLNARIAAGDPGVREGTTPSR
>NZ_CP038443.1|WP_171272512.1|383782_384391_-|YitT-family-protein
MDNTPRSAHPLYEDVLALLTAAGFVSLGIFLFHQVGLLTGGTAGLALLLQQVTGLSFGLLFFTMNLPFYALAWLRMGSRFTLNTFAAVATVSFMTDHLNAVLQIGKIEPVYAALIGGTLIGMGLLIMFRHKASLGGFNILALFIQDKFGVRAGKLQMGLDCAIVIASFFVVSPWLLALSVVAAIICNLVLTLNHKPGRYQIA
>NZ_CP038443.1|WP_171272513.1|384694_386056_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MRVSVFGIGYVGLVQAAVLAEMGHRVTCVDVDAAKVERLREGIIPIFEPGLAPLVQTNHQAGRLLFTTDVAEGVGFAELIFIAVGTPPDEDGSADLKHVLAVAGTIGRLMQGGKVVVNKSTVPVGTANRVHQHIASILAERGVDLPLEVVSNPEFLKEGAAVADCLRPDRIIIGTGSAHAMSLLEELYAPFNRNRDRIIQMDARSAELTKYAANAMLATKISFMNEMATLAEKLGADIEEVRKGIGADPRIGHHFIYPGCGYGGSCFPKDVKALIHTASEAGCDAPLLHAVERVNDGQKHKLMARLQQHFGSDLTGRTFALWGLAFKPNTDDMREAPSRVLMEAIWAAGGKVQAFDPEAMTEAQRLYGLRDDLTLCGTQEAALKGADALLICTEWQQFRAPDFELIQRTLKQAVIIDGRNLYDPARLHQRGFTYYAIGRGDSLATGLHKEQRQ
>NZ_CP038443.1|WP_171272514.1|386052_387051_+|NAD-dependent-epimerase
MKYLVTGAAGFIGFHVAQRLCHDGHQVVGIDNLNDYYEVSLKEARLARLSPLPGFRFERLDLADPVAMAALFAREQFERVIHLGAQAGVRYSLDNPFAYADSNLTGTLTVLEGCRHHGVKHLVYASSSSVYGLNEQMPFKTSDGVDHPVSLYAASKKANELMAHSYSHLYGLPTTGLRFFTVYGPWGRPDMALFKFVRAILAGEPIDIYNQGQLSRDFTHVDDIVEGIVRVADRSPVGDPNWRGQTDASPAPYRLYNIGNGSPVRLLDFVEAIETALGKPAIRNLLPMQPGDVLATWADTEALFEATGYKPKMALQEGVESFVDWYKTYYRV
>NZ_CP038443.1|WP_171272515.1|387110_388811_-|glycosyltransferase-family-39-protein
MRLVMVNDRFLLNQRSLGWLLLIALVVLGAGLGLRDPWPADEPRFALIAKEMVESGQWLFPMRGGEIYPDKPPMFMWGIALGYLLTGSIKVAFLLPSLLAGLLTITLVWDMGRRLWNPSVGFLAGLLLLFTVQFTLQAKTAQIDALVTFFITLGVYGFVRFLLCGGGWRWYWLGWFAAGLGIITKGVGLLALLILIPAIWTHREKIRAASRSDWLKGLAGPLFMLLAIGLWLVPMLLAVAQSGDPVLQAYRDNILLRQTVTRYANAWHHVKPFWYYLTSVIPPFWLPVSLLLPWLVVAWRKAIQGQDKRIILLLGYLVLVILFFSLSPGKRGVYVTPGTPALALLTAPFVAELLARVWPARLLGGLGWLLGIICVGGAGALAFSAKLASKLGDLGPAPWLPLLAMGAALLLINALLRRAPLTAIFCSLAVGWLIYSSWICVKLNDMRTPEGVMALAAQQVPVGDELLLAGFKEQHLLFARQPVQHYPYLLGDGEQAREAAAWVAAAPRRHVLGSADLMVLCFEPEKMENLGNRHRTDWLLAGVDALKPACQGLTPRLEPFRYTPGP
>NZ_CP038443.1|WP_171274270.1|388788_389142_-|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein
MLSMPLDWLDWTGLHVTGWKIIGYTGALMFGGRWLVQFVASKRAGKPVIPRLFWYMSVLGSLMTLSYFVFSPKQDSVGVLQNLFPTFTALYSLYLDIQHRGWKRDKVVNDYEARHGK
>NZ_CP038443.1|WP_171272516.1|390515_391361_+|lytic-transglycosylase-domain-containing-protein
MQRLCTWSWGLLLLLVTPSSHADAFRQAPKAMSALRQGAAMEQGNPRQAIAHYCTAANLGNPEAYYRIGRLLARGPQGIRSARHANAYLAMAMRLGNQQAARYYNERVGNAPLGTCGIGGGGGGTPWVRPSTPFDQDSYLARQSLTKQKLAVMIRQAAHRHKVDPQLALAIAIAESNLNSTAVSPKQAQGVMQLIPETQVRFGVTRPFDAQQNIRGAMIYLKWLEKQFGTDWVRISAAYNAGEQAVIRYGGVPPYQETQEYVQRVLYYSGQDPTKVIKRPR
>NZ_CP038443.1|WP_005329110.1|391692_393360_+|energy-dependent-translational-throttle-protein-EttA
MAQFIYTMNRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPGIKIGYLPQEPKLDPEQTVREAVEEAVGEVKRAMARLDEVYAAYADPDADFDKLAREQGELEAIIAAQGGHNMENQLERAADALRLPAWDAQIKHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDARLAQEASSEAARRKSIEKELEWVRQNPKGRQAKSKARMARFEELNTNDYQKRNETNELFIPPGPRLGDKVVEVANLCKSYGDRQLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGDTVVLASVDQFRDSMNDKKTVFEEVADGQDILRIGNYEFPSRAYIGRFNFKGADQQKRVGELSGGERGRLHLAKLLQTGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKIAFFEGNFTEYEEWKKKTYGADAVQPHRAKYKRIAK
>NZ_CP038443.1|WP_171272517.1|393493_393829_+|hypothetical-protein
MTQTSAPPKRVTIQIRIEPGCLGPDGKRHIDTFCTAASRIFAAIEPERVSWVLLPRHDKQLPEQAYFIDGRALSEAQAGLLLQRMGLTLATLQEHSDAVLAQLVERYLKSR
>NZ_CP038443.1|WP_171272518.1|394091_395447_+|NCS2-family-permease
MNQPHNATEQAANPAAGQGLLERLFALKGHGTTARTEVIAGITTFLTMVYIVFVNPQILSAAGMDTQAVFVTTCLIAGIGSILMGLLANLPIALAPAMGLNAFFAFVVVAGMGYSWQVGMGTIFWGALGLLILTLLRVRYWLIANIPLTLRVGITAGIGLLIALLGLHNAGIVVASPATMVTVGNLTSLPCLLGLLGFFLICIFSARGVHSAVLIAIVVTTTLGWLFGDVTFKGFVSVPPSITPVFGQLDLMGSLDISLAGIIFSFMLVNLFDSSGTLIGVTNRAKLADDKGHFPRMKQALVVDSVSSVGGAFMGTSSVTAYIESSSGVAVGGRTGLTAIVVGVLFLLAIFFSPVAAMVPAYAAAGALIYVGVLMCSELTRVKWEDLTEAVPAFMTAVMMPFSFSITEGIAVGFISYCVMKAGTGRWREINPCVLVVALLFVLKFVWVDSH
>NZ_CP038443.1|WP_171272519.1|395514_396333_-|co-chaperone-DjlA
MRIWGKVLGAFFGFLLGNIFGALLGLWIGHRFDRGMGIRGAFQRAPSQQQQAVFFHATFAVMGHIAKASGQVTEHEIRVASSLMDKMRLSGEQRVRAQESFRQGKENDFPLRETLAEFRQASLGQRDILRFFLEVQLQAAFADGKVEANERAILQTIADELGFSRIELARILAMAEAQMNFFHRQQQGGQGQQYRQEAPSQDRLKDAYQLLGVSESDSDQDIKRAYRKEMSKHHPDKLAAKGLPPEMMEMAKEKTQEIQQAWEWIREARGIR

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Crispr_ID: NZ_CP038443_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_2

786573-786657

Orphan

Consensus_repeat	Method
TGCCTGCCGCGTTGCGCCAGCCAGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_2

>merge|NZ_CP038443|2|786573-786657|CRISPRCasFinder
TGCCTGCCGCGTTGCGCCAGCCAGCCGACACCGCCCGTACCATCCGCGAGCAGGTCTTGCCTGCCGCGCTGCGCCAGCCAGCCGA

>NZ_CP038443|2|2|786573-786657|CRISPRCasFinder
TGCCTGCCGCGTTGCGCCAGCCAGCCGA	CACCGCCCGTACCATCCGCGAGCAGGTCT
TGCCTGCCGCGCTGCGCCAGCCAGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171272723.1\|787410_788523_+\|phage-late-control-D-family-protein	unknown	unknown	gnl\|CDD\|222877
NZ_CP038443.1\|WP_171272717.1\|781243_781852_+\|tail-fiber-assembly-protein	unknown	unknown	gnl\|CDD\|367075
NZ_CP038443.1\|WP_171272722.1\|786880_787375_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|226030
NZ_CP038443.1\|WP_171272718.1\|782032_783211_+\|phage-tail-sheath-protein	unknown	unknown	gnl\|CDD\|164955
NZ_CP038443.1\|WP_171272714.1\|778303_779203_+\|baseplate-J/gp47-family-protein	unknown	unknown	gnl\|CDD\|164963
NZ_CP038443.1\|WP_041206456.1\|793660_794116_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|377329
NZ_CP038443.1\|WP_171272720.1\|784112_784244_+\|GpE-family-phage-tail-protein	unknown	unknown	gnl\|CDD\|368955
NZ_CP038443.1\|WP_005332441.1\|789009_789528_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP038443.1\|WP_005332433.1\|798587_799253_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP038443.1\|WP_171272724.1\|794181_797034_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP038443.1\|WP_041206455.1\|791992_793504_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP038443.1\|WP_041206454.1\|789611_790682_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP038443.1\|WP_025327469.1\|783819_784104_+\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NZ_CP038443.1\|WP_005332438.1\|790707_791820_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_CP038443.1\|WP_171272716.1\|779828_781244_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227618
NZ_CP038443.1\|WP_043128915.1\|797276_798569_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP038443.1\|WP_171272719.1\|783220_783739_+\|phage-major-tail-tube-protein	unknown	unknown	gnl\|CDD\|164995
NZ_CP038443.1\|WP_171272715.1\|779199_779832_+\|phage-tail-protein-I	unknown	unknown	gnl\|CDD\|226820
NZ_CP038443.1\|WP_171272712.1\|777387_777939_+\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|368076
NZ_CP038443.1\|WP_171272713.1\|777935_778307_+\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|134016

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171272723.1\|787410_788523_+\|phage-late-control-D-family-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	4.73388e-156
NZ_CP038443.1\|WP_171272717.1\|781243_781852_+\|tail-fiber-assembly-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	7.93553e-33
NZ_CP038443.1\|WP_171272722.1\|786880_787375_+\|phage-tail-protein	gnl\|CDD\|226030	COG3499, COG3499, Phage protein U [General function prediction only].	1.19245e-46
NZ_CP038443.1\|WP_171272718.1\|782032_783211_+\|phage-tail-sheath-protein	gnl\|CDD\|164955	PHA02560, FI, major tail sheath protein; Provisional.	0
NZ_CP038443.1\|WP_171272714.1\|778303_779203_+\|baseplate-J/gp47-family-protein	gnl\|CDD\|164963	PHA02568, J, baseplate assembly protein; Provisional.	2.15137e-133
NZ_CP038443.1\|WP_041206456.1\|793660_794116_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|377329	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.	3.53299e-45
NZ_CP038443.1\|WP_171272720.1\|784112_784244_+\|GpE-family-phage-tail-protein	gnl\|CDD\|368955	pfam06528, Phage_P2_GpE, Phage P2 GpE. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.	7.30932e-07
NZ_CP038443.1\|WP_005332441.1\|789009_789528_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	5.95889e-16
NZ_CP038443.1\|WP_005332433.1\|798587_799253_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.44842e-29
NZ_CP038443.1\|WP_171272724.1\|794181_797034_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP038443.1\|WP_041206455.1\|791992_793504_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP038443.1\|WP_041206454.1\|789611_790682_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP038443.1\|WP_025327469.1\|783819_784104_+\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	3.41078e-12
NZ_CP038443.1\|WP_005332438.1\|790707_791820_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	8.84994e-119
NZ_CP038443.1\|WP_171272716.1\|779828_781244_+\|phage-tail-protein	gnl\|CDD\|227618	COG5301, COG5301, Phage-related tail fibre protein [General function prediction only].	2.14776e-81
NZ_CP038443.1\|WP_043128915.1\|797276_798569_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	7.54094e-129
NZ_CP038443.1\|WP_171272719.1\|783220_783739_+\|phage-major-tail-tube-protein	gnl\|CDD\|164995	PHA02600, FII, major tail tube protein; Provisional.	2.18288e-75
NZ_CP038443.1\|WP_171272715.1\|779199_779832_+\|phage-tail-protein-I	gnl\|CDD\|226820	COG4385, gpI, Bacteriophage P2-related tail formation protein [General function prediction only].	2.28355e-75
NZ_CP038443.1\|WP_171272712.1\|777387_777939_+\|phage-baseplate-assembly-protein-V	gnl\|CDD\|368076	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector. Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft.	1.67631e-36
NZ_CP038443.1\|WP_171272713.1\|777935_778307_+\|GPW/gp25-family-protein	gnl\|CDD\|134016	PHA02516, W, baseplate wedge subunit; Provisional.	4.23846e-41

>NZ_CP038443.1|WP_171272720.1|784112_784244_+|GpE-family-phage-tail-protein
MAEIAIIAHWPPSEMAAMDISELMGWHQRLVETYNRINGAEEQ
>NZ_CP038443.1|WP_025327469.1|783819_784104_+|phage-tail-assembly-protein
MEQKEITLDTPIQRGESTLNSLIIRSPKKAGHLRGLNTMDIVQMNVDTLIKLLPRITDLTEKEVNDMDPADLLKAGVVVVGFLMGSQQEAYLTA
>NZ_CP038443.1|WP_171272719.1|783220_783739_+|phage-major-tail-tube-protein
MALPRKLKKLNVFLNGDSWVGEAEDFTPAKLGRKFETYRGGGMPGAVNIDMGLDDSALDVSFTFGGYGEPLLNCMGEPKADGTSLRFAGSVQRDDTGEVVAVEIVCRGRFKELDRGTLKAGDNTQAKVSMVNTYYKETINGRVMHEIDLINMVEIGPDGVDRMAEHRKAIGL
>NZ_CP038443.1|WP_171272718.1|782032_783211_+|phage-tail-sheath-protein
MALDQFHHGVRVVEVSEGTRTIRTVATAVIGIICTGSDADAAYFPLNKPVLIANLPAAIAKAGSTGNLKRSLQTIYDTVNTIVIAVRVADGADAAELTSNIIGTILPDGSYTGLKALERAAPVTGVKPRILCVPDNCTLPIATALAGATKKLRAFAYVPTIADTVEAALAYRENFSSRELMPIHGDWTAWDTAANASIKLDACLKAAAMRALIDKEIGWHKTLSNVGVTGVDGMTKALFWDLQDPDTEVGLLNANEITALIRADGFRYWGNRTCSDDPLFAFENYTRTAQILADTMAEAHMWANDKPLTPTLVKDIIEGIKAKGRELVAGGYLLGFDCWYNEELNDKDTLKAGKLRIDYNYSPMPPLEDLGFIQRITDSYLIDFGARVAAAA
>NZ_CP038443.1|WP_171272717.1|781243_781852_+|tail-fiber-assembly-protein
MNQPCVTWGQNGWAETDGWALAHCANTETHEYIGPIDVWVSVGTGLPACSFLDAPPASEPGKTIVRHGDTWMLVDDHRGQTAYDKQTRAASVLTEPGEVPVTQTLVAPSSPFDVWDEERDAWVKNIEAESNWQRQQAETQRNMLMAEANQQIAVLADAVELGMATEAEQASYTAWRQYRVLLTRLDLTLSPVPWPPKPNTTT
>NZ_CP038443.1|WP_171272716.1|779828_781244_+|phage-tail-protein
MSAIYFAIPTNAGQAKIANAIALGVPLKITHMAVGDGNGQPVTPKPAQTALVREQRRAPLNTLFQDPLNPAQLVAEQIIPETVGGWWIREVGLFDDTGTLIAIANSPDTYKPQLSEGSGRTQTIRMVLIVSDTSAVELKIDPSVVLATRKYVDDKMADELAKRDSKQSVRVATTGAIALSAAQTIDGVVLAVGDRVLVKDQADAKQNGVYLVAAQAWTRTTDADTGAKLNAGARLYVEEGAVNGGKVWTLATTGAITLGTTLLQFKDEHPAATQQIAGVSRFATQAEAIAGVLDTVAVAPKEMKAAMEALLDIVAPVGVPIQWVAATPPNSRFLIAQGQGFDKVAYPKLGALWPTGVIPFDMRGEFPRGWDNGRGVDAGRAILSAQAQQIMDHTHHMATWTGDASVLVPKAAAVTGAAAITRGDGGTIYSDQDAVGTNNPAARAVGTRGVAGSPGENRPRNIAFNYIVRAA
>NZ_CP038443.1|WP_171272715.1|779199_779832_+|phage-tail-protein-I
MNTLLPPSTSRTERNLATAGGNAQQLPIPFRTLWSPWTCPAHLLPYLAASWSVDRWDDSWPEATKRQVIANSYFVHSRKGTIGAIRRVVEPLGYLIRVLEWWQETPAATRGTFKLDIGVLDTGITEAMYQELERLIADAKPMTRHLTGLAISMETSGPLYLGAACYLGDELTIYPYSPEAIEISGQQWHGGILHTIDTMTIQPQPTGGAA
>NZ_CP038443.1|WP_171272714.1|778303_779203_+|baseplate-J/gp47-family-protein
MSTMTLSQLPQPDVIEVLDYEAILAERKAYFISLYPADQQAAIAATLALESEPITKLLQENAYRELILRSRINEAAVANMLAWSKGSDLDNLVANWNVKRLTIQPGDPTATPPVPEVREDDEALILRALMAWDGLSVAGPTGAYEYFALSADGKVADAKGSSPTPAEALVTILSTEGDGAADAALIATVTEALSHEDKRPVADRLTVQSAGIINYTITAKLHIASQGAEVDVILQAAREQLAAFINPRRRIGVEVPRSAIDAALHVQGVRKVELTGWVDITPSATQAAYCTGFTVERAP
>NZ_CP038443.1|WP_171272713.1|777935_778307_+|GPW/gp25-family-protein
MNWLGMNAASGRTISATDHIVQSVRDILITPVGSRVMRRDYGSELFHLIDQPQHQATRLRLMAATVQALINWEPRITITRVDVQGGDMSGALTIELSWRRKDGGAPDSKPETASITIPTGAAQ
>NZ_CP038443.1|WP_171272712.1|777387_777939_+|phage-baseplate-assembly-protein-V
MQPTPTELQRLIDNLIRIGTVTAVRSGECRVKTGDLITNWRPYAAARAGKNRTRHRLSIGEQVLMLSVSGDPRNAYIVGPINCAAFPEPLADDDNPDLDRTEYADGAVIEYNPATGELNATGILSARVKASVSVTFDAPKVICTNLLQAKRVVSETAKIGPVEVTTHSHGGVQGGSGQSGGPV
>NZ_CP038443.1|WP_171272722.1|786880_787375_+|phage-tail-protein
MMMTLGWFVFMRSTAAPQSQQDERAWRHPGNNRVGARPSYQFLGVDEETSTLSGVLLPELTGGPVALDMLNLMADSGGAFPLIQGDGVMRGSFVIEGISTTRSEFFADGSARKIEFTIKLKRIDNNDGSLVNGLLGRVGGNLLGRLGGSVMMGAMIGGKVGGLF
>NZ_CP038443.1|WP_171272723.1|787410_788523_+|phage-late-control-D-family-protein
MKNPLNDPINGHPIPVYQLLVDGNDISAAIRPRLMSMTITDNRGFTADTIEITLDDSDGQLDMPRRGATLRAFIGWQGSALVDKGTYKIDEVEHGGAPDVLTIRGKSADLRGGMNKLREQSWHQTTVSGIVSQVAARYQLTPCVGDSLKGQLIDHIDQANESDLAFLTRLAGQCDGIATVKNGRLLFIKAGQGTTASGQPLPAITITRRDGDQHRFSVADRDAYTGVTAYWQDNKTAEKKKVEVKRKKKTKPKQERPLPPGVVVNKKENELLVGSSENVKELRHVYANQSNAMRAARAEWERIQRGVAEFDITLAKGRPELYPEQPTTVRGFKPDIDAAPWLLTQVVHDLTNQGYTNRVQLEVKLEELPE
>NZ_CP038443.1|WP_005332441.1|789009_789528_+|RDD-family-protein
MAKRKTPSSLQPPPQHQHPSAGLLRRLGALLYDYLVVIALLIIAGFIGMGVAQLLLATGMATVPEGKDAAWLLTSPLYSAWLALVICGFYTWFWTRAGQTIGMRAWRLRIQNLDGSNIRITQALIRLATSAFGLGNLMCVFNRARPRAFQDIWAECEVVVLSKQENLEQLNK
>NZ_CP038443.1|WP_041206454.1|789611_790682_-|LPS-export-ABC-transporter-permease-LptG
MFGILDRYIGRVIFMSILLCELTLVGLAALIKYVEQLKAVGEGNYDMLNALYFVLLSMPKEAVLFFPLAALLGGLIGLGQLATSSELVVMQASGRSKISIVMAALKTAIPLMLLVGLMGEYVAPAAKRMADDIKAGAMSEGRLTVSAYGVWARDGNNFVNINGVRNDGALTGITLYRFTPSRALIDVVQAQEGVFEQHHWLLKQVHITRFDDPKQILDEKHAQMQWQSELTPKQLGVVSIDPENLPISGLRDYIGYLDANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIFGPLRSVSMGARMLMGIMTGFAVYVSDRVFGPVSLVYAVPPILAAIAPSLLFGGISFYILSRKQ
>NZ_CP038443.1|WP_005332438.1|790707_791820_-|LPS-export-ABC-transporter-permease-LptF
MTVIVFRYLFRETLKTQLAVLFVLLLIFVSQQFIQIIGDAADGEVPTRLVSTLLLLNLPNMALLMLPISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMGSALLLALLTAAVAAFNTGWIAPQAKEREYQVIDEFKADPGISFLQAGRFMELDKGRLVAYIQDLNDKGSELQKIFVLQRAEGSSPPSVVVANEGQVTADSNGLQWLTLKDGSRYEGQFTGKQFQVSEFSEYSLVIRQQEMERSNRKAAAKPTMALLGTQDNQLMAELQWRLSLPFSILVLTVLVVPLARVNPRQGRYAKLLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPLVYLLLIGVPLNLQGTSWWNGVKGHFFKGKSA
>NZ_CP038443.1|WP_041206455.1|791992_793504_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACVVVGVFEPRRLSPVAEQLDKISDGYLSSLLRRGDLEGKPGQMLLLHQVPGVLSERVLLVGCGKERELDERQYKQIINKTITTLNETGSMEAVCFLTELHVKGRDTYWKVRQAVETTKAGLYSFDQFKTNKAEPRRPLRKLVFNVPTRRELTIGERAITHGLAVAKGVRICRDVANMPPNVCNPAYLASQARRLADAYDNITTKVIGEQEMAELGMNSYLAVARGSENEAMMAIIEYKGNADAKPIVLVGKGLTFDSGGISIKPADGMDEMKYDMGGAASVLGTMHALAQLQLPINVIGVLAGCENMPGGNAYRPGDILTTMSGQTVEVLNTDAEGRLVLCDALTYVDRYDPETVIDVATLTGACIIALGHHTSGLLANHNPLAHELLNASEQAGDRAWRLPLFDEYQEQLESPFADMANIGGRPAGTITAAAFLSRFTKKYNWAHLDIAGTAWKSGKDKGSTGRPVPLLTQFLLNRAGVADVEDKE
>NZ_CP038443.1|WP_041206456.1|793660_794116_+|DNA-polymerase-III-subunit-chi
MSQVTFYLMSEPDDAQASAVERLACQLAADGWSAGHLYLFCNDEAQALRLDELLWQLPPDRFVPHQLQGESGQAPVEIGHQPPKRRYARLINLAEQTPLFAGHFAQVVDFVPTDETQKQQARERYKHYRQAGHALEMRDQPVLAAPDPAQP
>NZ_CP038443.1|WP_171272724.1|794181_797034_+|valine--tRNA-ligase
MEKTFNHNAIEQALYQHWEAQGYFKPHGDTSKDSFCIMIPPPNVTGSLHMGHAFQQTLMDTLIRYNRMQGKNTLWQAGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWQWKEESGGTITRQMRRLGDSVDWERERFTMDEGLSAAVQEVFVRLYEDGLMYRGKRLVNWDPKLNTAISDLEVENREIKGHMWHLRYPLAKGAKTAEGQDHLIVATTRPETMLGDTAVAVNPEDPRYKALIGQHILLPLVNRLIPIVADEHADMEKGTGCVKITPAHDFNDNEVGKRHNLPMINIFTLDAHVRAEAEVVDTNGNPSTAYDAALPSEFAGMERFAARKAIVAKLDELGLLAEIKDHVLQQPYGDRGGVPIEPMLTDQWYVRVAPMAKTAIEAVEDGRIQFVPKQYENMYFSWMRDIQDWCVSRQLWWGHRIPAWYDDAGNVYVGRDEAEVRAKHSIPSVTTLRQDEDVLDTWFSSALWTFSTLGWPNNTEALKTFHPTDVLMSGFDIIFFWIARMIMMTMHFIKDENGQPQVPFKTVYITGLIRDEEGQKMSKSKGNVLDPLDMIDGISLEDLLEKRTGNMMQPQMAEKIGKRTAKQFPEGIEAHGTDALRFTLAALASTGRDINWDMKRLDGYNNFCNKLWNASRYVLMNTEDQDCGLHGGEMQFSLADRWIQSQLQVAIRDFRTALDTYRFDIAAGVLYEFIWNQFCDWYLELTKPVLGKGSEAEQRATRHTLVTVLETLLRLAHPIIPFITETIWKSVAPLTGVHADTIMIQAFPEFDAAKVDDAAMADQEWVKEFIVSIRNIRAEMNVAPSVPLNVLLQCDAKDAQRASDNEAFLKSLARLESIRVLADGEVAPLSVKKLIGTTELMIPMAGLIDKDAELARLAKEVARLVGECGRIEGKLGNEAFVAKAPDAVIAKEREKLEDYRLQLTKLEAQQAEIAAL
>NZ_CP038443.1|WP_043128915.1|797276_798569_+|HlyC/CorC-family-transporter
MEILILFGLILLNGVFAMSEIAIVTARKARLSKMASEGSRSAAIALKLGEDPTHFLSAVQIGITSIGLLNGIYGESLLAQPFALWLQEWGLSPKSSSLFATVIVVVLVTYLSIVVGELVPKRLGQLNAERIACLVARPMLWLATLTRPFVWLLSASTNASLRLLRVDQSSSNNVTQEEIHAILVEGSEAGIIEDHEHTMLRNVFRLDERSLSSLMVPRSDIRYLDLSLPLETNLQRLVEYRHSFFPVCDGSLSDLVGILNVSKVLHAYIKGEPIDLAALTQDGSLLPETLNGLELLNHFRAHAEHMVLVVDEYGELQGLVTQQDLLETLAGDFQQEDGENNWAFQRADGSWLLDGLIPLPELKDCLELVRLPEEEKHHYHTLGGLIMLLLGRLPQTGDLVTLEQWQLEIVDMDGLRIDKVLAMPLTDQPS
>NZ_CP038443.1|WP_005332433.1|798587_799253_+|DedA-family-protein
MEQFYHLAHAFIHQDLATLSDPKMVFMVYIVLLTFLVLENGFIPTAFLPGDTLLILTGVLIYQGVLPLAVIPLLILATFFGTWLGYMQGRFLGHTQMYHRLMSHLDEKHKEKVHYLLNKYGIITLITARYIAFVRTAYPYIVGANEIPQGRFLVVNLISSIMWICPLVGLGYYLSHTKLAAQYESQFLSIILCLPLVLLVGGLIALVWRWLSKRKVHVSRD

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Crispr_ID: NZ_CP038443_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_3

903426-903547

Orphan

Consensus_repeat	Method
GCCCCTCGATGTCGAGGCAGCGCGGCTCATGCTGACCCCGAAGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_3

>merge|NZ_CP038443|3|903426-903547|CRISPRCasFinder
GCCCCTCGATGTCGAGGCAGCGCGGCTCATGCTGACCCCGAAGGCGTTGGCAAGACAGTCGTCACAGCTCATGGCTGCCCCTCGATGTCGAGGCAACGCGGCTCATGCTGACCCCGAAGGCG

>NZ_CP038443|3|3|903426-903547|CRISPRCasFinder
GCCCCTCGATGTCGAGGCAGCGCGGCTCATGCTGACCCCGAAGGCG	TTGGCAAGACAGTCGTCACAGCTCATGGCT
GCCCCTCGATGTCGAGGCAACGCGGCTCATGCTGACCCCGAAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171272773.1\|898958_899585_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|239344
NZ_CP038443.1\|WP_171272775.1\|902387_903134_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP038443.1\|WP_041206510.1\|901037_901619_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_171272780.1\|909042_911007_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP038443.1\|WP_171272782.1\|913266_914712_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP038443.1\|WP_005328751.1\|908509_908782_-\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NZ_CP038443.1\|WP_171272772.1\|897253_897430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_041206513.1\|903586_904045_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
NZ_CP038443.1\|WP_171272778.1\|905687_906653_-\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|372298
NZ_CP038443.1\|WP_171272779.1\|906769_908386_-\|glycosidase	unknown	unknown	gnl\|CDD\|200451
NZ_CP038443.1\|WP_025328549.1\|911185_912082_-\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NZ_CP038443.1\|WP_171272783.1\|914720_916700_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038443.1\|WP_081934378.1\|899668_900844_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|224890
NZ_CP038443.1\|WP_171272781.1\|912409_913204_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP038443.1\|WP_171272777.1\|904231_905680_+\|RimK-like-ATPgrasp-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379599
NZ_CP038443.1\|WP_171272771.1\|895413_897153_-\|HTH-type-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP038443.1\|WP_041206508.1\|897588_898857_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180392
NZ_CP038443.1\|WP_171272776.1\|903175_903421_-\|DUF3624-family-protein	unknown	unknown	gnl\|CDD\|372017
NZ_CP038443.1\|WP_005329373.1\|894967_895363_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP038443.1\|WP_171272774.1\|901733_902171_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171272773.1\|898958_899585_+\|glutathione-S-transferase	gnl\|CDD\|239344	cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	1.01978e-35
NZ_CP038443.1\|WP_171272775.1\|902387_903134_-\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	7.37568e-146
NZ_CP038443.1\|WP_171272780.1\|909042_911007_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	1.2345e-94
NZ_CP038443.1\|WP_171272782.1\|913266_914712_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	8.39667e-44
NZ_CP038443.1\|WP_005328751.1\|908509_908782_-\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	0.00041712
NZ_CP038443.1\|WP_041206513.1\|903586_904045_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	1.10953e-13
NZ_CP038443.1\|WP_171272778.1\|905687_906653_-\|IS1595-family-transposase	gnl\|CDD\|372298	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.	1.58174e-10
NZ_CP038443.1\|WP_171272779.1\|906769_908386_-\|glycosidase	gnl\|CDD\|200451	cd00551, AmyAc_family, Alpha amylase catalytic domain family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	3.00636e-56
NZ_CP038443.1\|WP_025328549.1\|911185_912082_-\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0
NZ_CP038443.1\|WP_171272783.1\|914720_916700_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.66365e-64
NZ_CP038443.1\|WP_081934378.1\|899668_900844_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|224890	COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion].	0
NZ_CP038443.1\|WP_171272781.1\|912409_913204_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.90602e-06
NZ_CP038443.1\|WP_171272777.1\|904231_905680_+\|RimK-like-ATPgrasp-N-terminal-domain-containing-protein	gnl\|CDD\|379599	pfam14401, RLAN, RimK-like ATPgrasp N-terminal domain. An uncharacterized alpha+beta fold domain that is mostly fused to a RimK-like ATP-grasp and is found in bacteria and euryarchaea. Members of this family are almost always associated in gene neighborhoods with a GNAT-like acetyltransferase fused to a papain-like petidase. Additionally M20-like peptidases, GCS2, 4Fe-4S Ferredoxins, a distinct metal-sulfur cluster protein and ribosomal proteins are found in the gene neighborhoods. Contextual analysis suggests a role for these in peptide biosynthesis.	9.3316e-43
NZ_CP038443.1\|WP_171272771.1\|895413_897153_-\|HTH-type-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP038443.1\|WP_041206508.1\|897588_898857_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180392	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase.	0
NZ_CP038443.1\|WP_171272776.1\|903175_903421_-\|DUF3624-family-protein	gnl\|CDD\|372017	pfam12292, DUF3624, Protein of unknown function (DUF3624). This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.	1.62952e-24
NZ_CP038443.1\|WP_005329373.1\|894967_895363_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	5.85406e-31

>NZ_CP038443.1|WP_171272776.1|903175_903421_-|DUF3624-family-protein
MGCDDCLATALRARLGRCPICAIQTFVIGAVGWLVWWWCGADTSVNALTGLLFALGGSGLLLLHLAVFIWRKATGRELDNE
>NZ_CP038443.1|WP_171272775.1|902387_903134_-|SDR-family-oxidoreductase
MIAMVTGASSGFGEAISRQLVQVGYKVIGTGRRAERLAALAGELGEQFLPLAFDVQDKAATRAAIAGLPAEWSEVDLLVNNAGLALGLEPAHKADLEDWEQMIATNISGLTLLTRLLLPGMVARNRGHVINIGSIAGTYPYPGGNVYGATKAFVKQFSLNLRADLAGTAIRVTNVEPGLCGGTEFSNVRFHGDDAKAATVYQGVQAIQPEDIANTVLWVSQQPAHVNINSIEIMPVAQTFGPLQISRR
>NZ_CP038443.1|WP_171272774.1|901733_902171_-|hypothetical-protein
MDIKPYGQQLAQSASHSRALATLGGNDSQQGSWDQQVSLSSQVLTGKAQQVLTYEHLARSGKSASLAGSASNTVVQQLVDKALGFDRKKFDDLESQIKGVVDDKTLSAEERETQTRALTEQRDAMLKAAMDRLTGKSSSGQSAQA
>NZ_CP038443.1|WP_041206510.1|901037_901619_+|hypothetical-protein
MKLKHAWIAGVLTLCVNPLIQAAEVTTNVAVTPGQASLAEEVKAEATVTAIDLATRKVSLKNAEGKTFDLVAGEEVTNLQNLKVGDVVALRYLQLLDLELLKGTAGVRKRVVEVDGSKAAAGEQPGAGAGMQVTIYADVIDVDKAQQTIRVKGVDNTLTLKVKDPAQFALIAKGDQIKAVQTTAIAIGIVPKP
>NZ_CP038443.1|WP_081934378.1|899668_900844_-|iron-containing-alcohol-dehydrogenase
MHSTEGSAVYNFQYANPTRICFGEGQIATLPELVPAGSRLLVLYGGGSIKQNGVYEQLTQALAGREWLEFPGIGANPQYDQLMEAVALVKRERIDFLLAVGGGSVVDGTKFVAAAACFEGEDPWEILLDKAPVKAALPLGCVLTLPATGSESNPAAVVSRGEAKLSFYNPLVLPRFAVLDPTTTYSLPPRQVGNGVVDAFVHILEQYLTFPVGGEVQDRLAEGLLQVLVDNGPRALTEPTNYQVRANLMWAASLALNGLIGRGVPQDWSTHAIGHQLTALHGLDHAQSLAVVLPSLLREQSAQKQEKLAQFAERVWHSGREDRELRIEEAIIRTEQFFQQMGVGTRLADYGLTESCIPAICSNLKRFGLTALGEQQDIDPDKVARILSHAL
>NZ_CP038443.1|WP_171272773.1|898958_899585_+|glutathione-S-transferase
MIVLHHLNKSRSQRIIWLLEELGLPYEIKAYQRDATTFLAPPELKAIHPLGKSPVIEFDGRVLAESGAITEYLIARHAAERLAPAPDSPDYPEYLQWLHFAESSGILPLLLDMFVRKDGSPMRFLPDYAKAECAKVLGYLNAVMSTRHYLVGERLSGADIMNSFLVDLLAQGGQLAQFPHLEAYWQLLNTHPARQKAAALERELDKIA
>NZ_CP038443.1|WP_041206508.1|897588_898857_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKDATLALHHGFSHDPTTKAVAVPIYQTVAYEFDSAQHGADLFNLAVPGNIYTRIMNPTNDVLEQRMAALEGGIAGLVVSAGSAAITYAIQALTAAGDNIVSTPQLYGGTYTLFAHMLPSFGVEVRFAKDDSAEAIAALIDDRTKAVYCESIGNPAGNIVDLAAFAKVAHARGVPLIVDNTVATPVLCKPIEHGADIVVHSLTKYVGGHGNSLGGVIVDSGKFPWADHAERFPQLTRPEPSYHGVVYTDAFGPAAFIGRVRTVPLRNTGAALAPMNAFLLLQGLETLSLRMERHVDNALRVAHHLKHHPKVAWVSYAGLPGHPHYPLAEKYMGGRPSAILSFGLKEGYEAGVRFYDALKIFKRLVNIGDAKSLACHPASTTHRQLSEAEQAKAGVKPEMIRLSVGIEAIEDILADLDQALEA
>NZ_CP038443.1|WP_171272772.1|897253_897430_+|hypothetical-protein
MSQTNPHAPNRIQQILRRYFRRILPRPLTLIEDPMQQLNRLMQWDMHQIDDREYRRRL
>NZ_CP038443.1|WP_171272771.1|895413_897153_-|HTH-type-transcriptional-regulator-SgrR
MPSSRLYQQFQRLAKQLGCDEREISLAEVADLLCCTPRNARLLLRRMQDQGWLSWSAEAGRGRRSRLILLDNQESLTRRRLRDLLSQGQLTQAVRLAEGRLDLLTPLLIEQLGQATREGRQILRVPYYRPLPQLLPTDPLRRSEIHLSRQIFNGLTRRNEENGEIEGDLAHHWECLGPCHWRFYLRPAVRFHHGRELGVEDVMESLHALRERPLFAHLARLESPWPRTLDMYLDSPDPLLPHLLAEPVAAILPRELKEEAGFALQPVGTGPYKVVANDPLQLCLEAFDDYFGLRALLDEIDIWMLPELAERLESHLQLGRDSPELGTMRGESELESGCYFLLQDDRSPPLQDPALRQWLTRLLNPIALMGRVAPELQRGWTSALGLLPHWRETLPAEEPRPARLPTRLVLACFNQHLEFEECAGAMASLLGEQGIRLEVRTLDYGRWVSGTDEDVDLWLGTLNLEHEHAFAPYAWLQGTPLLRKVWGGQQRLWQGLTQWRASGAEPGPRPLLAEVQRQGWFVPLFHHWLELESRVGVHGVRMTALGWFDFRSAWLRPEQGMAAAETGDGSHPDAGTLES
>NZ_CP038443.1|WP_005329373.1|894967_895363_-|acyl-CoA-thioesterase
MLEMQIQPRFQETDALGHINNTVPAVWFESARDPLFRLFSPELDVHNWHLIIAGYAVQFKRELFYGQQVLIKTGVRRIGTSSFTLWQEAWQGGELAVTAETTLIHFDYQTRQSRPLSDAHREGLRTWLVES
>NZ_CP038443.1|WP_041206513.1|903586_904045_-|GNAT-family-N-acetyltransferase
MLTVRAARTDDLGAIVKLERYCFPPEVAFGRSRWHYLLSHARGRTLLLLDEKAQLMGYLSVLEHRGWNRLIIQTLAIRWTVRRQGWARRLLEQVIREGREAGWGAIRLEVADANPEAQTLYHGLGFRPRLRLPDYYGPGQHAHRLVLALKQA
>NZ_CP038443.1|WP_171272777.1|904231_905680_+|RimK-like-ATPgrasp-N-terminal-domain-containing-protein
MSTYVIVDEPGDWPCRADYLLTARTYLQHGVPTTGGRPRIINLCRSLEHLSAGYYCSLLAQARSHHCLPGLQAISRQQPQQPPAKLWRKLQGWLARQSEDRIRVRAIFGQCEQSELAGLSRYYYGLNQLPLQELTLKRGRHGWSVRQQQSLSPLALSPRERELMLQHAQALVGTGDEEQTAPLYQLAILMDQNDGRASSDALAIERFIQAAAAQGIQAEILAPSAIERLPEFDTLWLRAETAVGHYTFEFARRAEQLKMPVIDSSRAILACSNKLYLYELMVRSGVPMPPTMVVTRRGRHQVDELVQRLGLPLMVKVPDGAQGRDLAMASDETQLARLLDEGLGRSALLLVQSRIPAEFDWRIGFLDGSPLFACRRYRPEPGNRIRRRKHPLDMSRIEALPLTEVPERVLQTARRAVHQLGNGLFGVDLRQQGQGCVLLEIIDNPWIRGDIEDREARDLYERLARAFRQRLENRGQSTPDRP
>NZ_CP038443.1|WP_171272778.1|905687_906653_-|IS1595-family-transposase
MDTQAFQHLLTLFPQLSVRQRHIAQRELQQPSLPSRINALLPDCPACPHCHAQPDQLAPWGWTRGLRRYRCKQCLRTCSTLTKTPLARLRKTQCWQAYAQALIDGLTVRAAARRCGVSKNTAFLWRHRFLRAMAEHRADHEGGIVEVDETFFLESFKGQYVWSRPARQRGGKGRTRGTGPDYIPVVVVQDREGHLADFQLEQLDARHVKAVLAPLVDKDAVLCSDGAGVYASFARSQGLSHQVLHNRAGQRVISGAYHIQHVNGYHRRLKEWMERFHGVATSYLKHYLGWRRMLERYQRGIDVRCCLHEALGRPMQHVIGT
>NZ_CP038443.1|WP_171272779.1|906769_908386_-|glycosidase
MKQGRLRHGGLIGAALLLTACGSGGGGSSSEPQPPVVNPPPTSDSRACYGDDQPACNLRTYQVMVESFVDGDGSANYGVGYGPSRHNGDLQGIIDSLDHIKSLNVNAIWLTPVFDSCAGQAGDDRLDATGYFACDFFNVDPNFGSNAQLKKLVEAAHQRGLHVFLDGVFGHVNRVGVSKPSPEGRLPALKSGGAGYPGQLVDYDQPESLAYFKEVARYWVEQYGIDGWRLDQAYQLGLDEWRAIRSEVEQASAVRKAAGQQWGTLGYMVGEVWKGADDIRNEAYGSSDNPALSSAFDFPLRYGLVQALAVEESGKGGQGASVLDASWNKVENYPDHAMPNLMLGNHDLVRFGDLLERGNFNPADYWQRHKAAFSFLAARSGPITLYYGEEFGDEVPGFAAQVGGDCAARGLCDDHVARSDGKVPGVTGFAPSSEQAELKQWLGQLLALRAAHPALYQGERIKLVAEGSVYGDIKQTAAEQIVYLLNVSTTPQSYAVPVGKLRSGSTLVDLQSGERLAMGGSSLTVDLPPLSGRFLQLQ
>NZ_CP038443.1|WP_005328751.1|908509_908782_-|DUF2442-domain-containing-protein
MPVFIDVEYVHDWCLFVVLSDGTTGVLDLTPWRSQPLFAAIDTERRFARVFINRRHQLEWPGGFTLSAQEVYHLIKPIDERDAFHDRNTH
>NZ_CP038443.1|WP_171272780.1|909042_911007_+|LTA-synthase-family-protein
MTKIRHWLGPFWPIAIFSAIALITLSASRAGLGLWQQERVDAVAGWSQLLLQGIRVDLATLCWLWGVPAVFTMLLAGPHALGRAWMQLIRVWLTLGLWLMLFLEISTPAFVTEYGVRPNRLYIEYLIYPKEVLAMLWAGHKGELLLALVFSLLTLGGGWWLSGRLMRHLSFPRWTLRPVFALLILAIGFLGARSSLGHRALNPAMVAFASDPLVNALTVNSAYSLFFAIKQMSNEESAGEFYGELPKERILALVREESGRPDQDFSSETLPSQTFNSASHSGKPKNLVILLQESLGAQFVGSLGGLPLTPNIDALSREGWAFEQLYATGTRSVRGIEAVLTGFTPTPAQAVVKLGKSQTNFFTIADLLKQRGYDTSFIYGGESHFDNMRSFFLGNGFTTIVEQKDFKNPVFEGSWGASDEDLMAKANDTFEALHKQGKPFFSLVFSSSNHDPFEFPDDRISLYEQPKATRNNAAKYADYAVGEFFRKAKASDYWKDTLFLVIADHDSRVGGASLVPIPRFHIPGVIVGEGIAPKQDPRIVSQIDMAPTLLSLMGISADYPMLGKDLTRMPADWPGRAIMQYDKNFALMRGKDVVILQPERASEGFIYDDASETLTPAPQADTMKDAALGLVLWGNLAYQQGLYQTAPDDRLALN
>NZ_CP038443.1|WP_025328549.1|911185_912082_-|methylenetetrahydrofolate-reductase
MGFHSARQVEALNQSLADLGNNISVSFEFFPPNSEGMENTLWQSIERLQVLEPKFVSVTYGANSGTRDRTHKVIKDIKERTGLIAAPHLTCIDASRDELRTIARDYWNSGIRHIVALRGDLPPGLDKPDMYATDLVALLKSEADFDISVAAYPEGHPEARSAQSDLLNLKRKIDAGANRAITQFFFDVETYLRFRDRCAAIGIDAEIVPGILPVSNFQTLNKFAGFTNVKIPRWMHQRFEGLDNDQMTRNMVGASIAIDQVRVLSQEGVKDFHFYTLNRSELTYAICHTLGVRPKGQA
>NZ_CP038443.1|WP_171272781.1|912409_913204_+|GNAT-family-N-acetyltransferase
MEDHPGFATDLLFDRYQGEVTDHEGFWTVRTPTAPDYYFGNYLLLPTPPSDRDKGWLEASFDKLIGQDPRIRHRTFQWPLAEGQNSRVAGFVAAGYQYMECVVLALEAADRKAPSDQDLAPARPFTPADWDDWLTLELDDRDSGHEQESYLAYLQSRRNLYQAMIADGLGQWWGIWYQDRLVASCGLFFTGTMGRFQLVRTHQDWRNRGLCRQLLNQVARQGFERARQLIIVADEHYHAQRVYRALGFVPVARIGSLCRWTHQP
>NZ_CP038443.1|WP_171272782.1|913266_914712_-|carbohydrate-ABC-transporter-substrate-binding-protein
MANKWIGALSLLLCGQLMASELVIESWRIDDKALWEEKIIPAFEAAHPGIQVSFNGVQNVDYMPTLWASLKEGKAGDLITCRPFDDSLALFKAGHLAELSEMAGMENFPSFAQSPWQTDSGAQTFCVPMASVIHGFFYNKQIFSELGLAVPQTRDEFFAVLDKVKADGRYVPLAMSGSESWVASELGFQNIGPNYWKGEDGRLALIGGQERLDNPQYVKVFEELARWRAYLGEGGEGRDYATTNELFTSGKAAFYAAGSWEIAPFTGKVDFGVMRPPVAKQGDGCFFTDHTDIGMGMNPASKNKEAAMTFLQWLTTSQFAELYTNSLPGFFSLSNHFFEATNPAAKEMMEWRDQCDSTIRVATQILSRGTPKLGDELAEVSQSVLLGTMAPQAAADRLEQGLKGWYAPHQGQQAKAVDCQCTAPAAVSAAPATVEAAVATPSAAISTALSASPESAAVAPSAAAATDVEQALASELEAPQP
>NZ_CP038443.1|WP_171272783.1|914720_916700_-|methyl-accepting-chemotaxis-protein
MGLSIVQRIIAGFVLMLLLLVLLGFISILKIRGINEGLSQVSDRATPLVIAVAGLKGALQDSNRWVLTYRTSEDATQLPQLASQFKAQQARFVAQSKEMARFNDVAEAGERFRQVDGATREFYGLADQVLSQHGQWIAALDRRHELELAFIRLEDTYQWAADLLLQQTASKRSMRNKAELITSGIARDLKNIRRADAKTDLNELEKVLAKDIEMARKRLERVLVPDDVRQRFVVNLDRMQELALGPQGLLATMRNGQQLAASLQSLNQQLDTSLVNSLALLDEMGKSAGSIASQSRIGADDAVSSASLWILIVSAISAAAALIIGYTTARSIQRPLQLIDRALDRMATGDMTRRIDYQSRCEFGSLTRSINTLADKTGELLSQINAGSRHLVEEASRAAEISERAMSRVQDQKSQTDQVAAAITELEVSATEVARSTDGTKREVDLADEEARAGRKQVATTRRITEQLAGAMEEAVGITHKLGEFSNNIGSILDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALANRTQTSTEEIQAMIENLQSSSKQVMEVMGRSQEQTQGCVSQTRAMDQALQSIAERMSAIKSMADQVAHAAQEQISVSQGVARHIAGIADVAYETEREARESAGSSEVLADLVAKQQQLIAHFKV

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Crispr_ID: NZ_CP038443_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_4

1138866-1138997

Orphan

Consensus_repeat	Method
TTCCCCTGGACCCACCATATGGAGGCCGGGGTCTATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_4

>merge|NZ_CP038443|4|1138866-1138997|CRISPRCasFinder
TTCCCCTGGACCCACCATATGGAGGCCGGGGTCTATCTCAAGCGCAAAGTGAGCTGATGCCGCCGGGGAGACCGCTTCGCCCTGTCCGAGCCACTTCCCCTGGACCCACCATATGGAAGCCGGGGTCTATCT

>NZ_CP038443|4|4|1138866-1138997|CRISPRCasFinder
TTCCCCTGGACCCACCATATGGAGGCCGGGGTCTATCT	CAAGCGCAAAGTGAGCTGATGCCGCCGGGGAGACCGCTTCGCCCTGTCCGAGCCAC
TTCCCCTGGACCCACCATATGGAAGCCGGGGTCTATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171272876.1\|1129275_1129749_+\|CreA-family-protein	unknown	unknown	gnl\|CDD\|368692
NZ_CP038443.1\|WP_171274292.1\|1139164_1139872_+\|two-component-system-response-regulator-RstA	unknown	unknown	gnl\|CDD\|236738
NZ_CP038443.1\|WP_171272877.1\|1131095_1132457_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|236954
NZ_CP038443.1\|WP_041206593.1\|1144612_1144828_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
NZ_CP038443.1\|WP_005325473.1\|1132628_1133048_+\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|377111
NZ_CP038443.1\|WP_171272884.1\|1148986_1149862_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP038443.1\|WP_005323666.1\|1149900_1151439_-\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NZ_CP038443.1\|WP_171272880.1\|1139990_1141316_+\|two-component-system-sensor-histidine-kinase-RstB	unknown	unknown	gnl\|CDD\|236724
NZ_CP038443.1\|WP_005325476.1\|1129826_1130816_+\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240659
NZ_CP038443.1\|WP_005328486.1\|1127250_1127637_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|274124
NZ_CP038443.1\|WP_171272874.1\|1127824_1128688_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_171272875.1\|1128808_1129279_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|226914
NZ_CP038443.1\|WP_042649209.1\|1141370_1141550_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_041206594.1\|1147373_1148495_-\|porin-OmpA	unknown	unknown	gnl\|CDD\|236764
NZ_CP038443.1\|WP_171272881.1\|1141616_1142873_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NZ_CP038443.1\|WP_171274291.1\|1136509_1137646_-\|DUF5610-domain-containg-protein	unknown	unknown	gnl\|CDD\|375859
NZ_CP038443.1\|WP_171272882.1\|1143052_1144486_-\|DUF2867-domain-containing-protein	unknown	unknown	gnl\|CDD\|187556
NZ_CP038443.1\|WP_171272878.1\|1135890_1136424_-\|ATP--cob(I)alamin-adenosyltransferase	unknown	unknown	gnl\|CDD\|213544
NZ_CP038443.1\|WP_043128714.1\|1133996_1135826_+\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NZ_CP038443.1\|WP_171272883.1\|1144975_1147183_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171272876.1\|1129275_1129749_+\|CreA-family-protein	gnl\|CDD\|368692	pfam05981, CreA, CreA protein. This family consists of several bacterial CreA proteins, the function of which is unknown.	1.95885e-74
NZ_CP038443.1\|WP_171274292.1\|1139164_1139872_+\|two-component-system-response-regulator-RstA	gnl\|CDD\|236738	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional.	1.37733e-152
NZ_CP038443.1\|WP_171272877.1\|1131095_1132457_+\|molecular-chaperone	gnl\|CDD\|236954	PRK11678, PRK11678, putative chaperone; Provisional.	0
NZ_CP038443.1\|WP_041206593.1\|1144612_1144828_-\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	1.86791e-38
NZ_CP038443.1\|WP_005325473.1\|1132628_1133048_+\|META-domain-containing-protein	gnl\|CDD\|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	6.22163e-29
NZ_CP038443.1\|WP_171272884.1\|1148986_1149862_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.50243e-07
NZ_CP038443.1\|WP_005323666.1\|1149900_1151439_-\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NZ_CP038443.1\|WP_171272880.1\|1139990_1141316_+\|two-component-system-sensor-histidine-kinase-RstB	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	0
NZ_CP038443.1\|WP_005325476.1\|1129826_1130816_+\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240659	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	0
NZ_CP038443.1\|WP_005328486.1\|1127250_1127637_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	4.41832e-25
NZ_CP038443.1\|WP_171272878.1\|1135890_1136424_-\|ATP--cob(I)alamin-adenosyltransferase	gnl\|CDD\|213544	TIGR00636, PduO_Nterm, ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.94108e-15
NZ_CP038443.1\|WP_171272875.1\|1128808_1129279_+\|DUF962-domain-containing-protein	gnl\|CDD\|226914	COG4539, COG4539, Predicted membrane protein [Function unknown].	4.24068e-14
NZ_CP038443.1\|WP_041206594.1\|1147373_1148495_-\|porin-OmpA	gnl\|CDD\|236764	PRK10808, PRK10808, outer membrane protein A; Reviewed.	6.88112e-163
NZ_CP038443.1\|WP_171272881.1\|1141616_1142873_-\|malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP038443.1\|WP_171274291.1\|1136509_1137646_-\|DUF5610-domain-containg-protein	gnl\|CDD\|375859	pfam18433, DUF5610, Domain of unknown function (DUF5610). This is a domain of unknown function found in bacterial proteins.	2.09442e-24
NZ_CP038443.1\|WP_171272882.1\|1143052_1144486_-\|DUF2867-domain-containing-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.41264e-107
NZ_CP038443.1\|WP_171272883.1\|1144975_1147183_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP038443.1\|WP_043128714.1\|1133996_1135826_+\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0

>NZ_CP038443.1|WP_171274291.1|1136509_1137646_-|DUF5610-domain-containg-protein
MQIDGMGAAQPKGVGIAPKSPQQAESKTADKGDEVSLNKPPKWAQVLIQQALQFALEINGQHYQAPKSQEFKLDPPEAITPETLFDYETVADNVLQFVTGRLGAARADGKSDEDLAKMMEQARKGVDMGFSDARKQLGDWADNEDIKTGMDQSYKLIQEGLESFEQEFFGEVSTTVLGAAKMASRQQAFLEIETRDGDKVMLRFSDSWQFKSRNDGSGSQFSLKSSQSFDFSLEGDLDSGEMEAIGKLVKGLDELAGQFFGGGEGKTLADRLDGLQLDDSQLASYSLKLKQSARLSQTYQGAHSLQEGLKPLADYLPKLSQLQQQADALLPPAQQQALTPAVLAARGQSEGAEGAGFMGFNQRMLEAMRLLGQQMATT
>NZ_CP038443.1|WP_171272878.1|1135890_1136424_-|ATP--cob(I)alamin-adenosyltransferase
MNPKKPRDKRELCYPFIFETQFQCDYEIATDELCCQVGAVLSHLVPDEDTRPVLADLATLQRLIYNLNGSVRGKLGIFEEDLDWLKGRYDHYNEASRGRVTGFVLPQGPQPIPTLHLCRCGSKKVVRLLVRLEESGVRFDPILYRFANLLANFFFVLTVYLKQAWDVTEVPYVSINY
>NZ_CP038443.1|WP_043128714.1|1133996_1135826_+|maltodextrin-glucosidase
MTHPFLFHPQVAPWFKESADTLLLTLFSELDAPIREVWLRHEPDNEEYLVAMRPVSTRDRLQVWQVELPLARGQEIHLYCFKCLTDEEQWWLHGAGVSAAMPPREQHFRFNSHHQPPTWVQDQVFYQIFPDRFCNGDPSLSVKHHEYQYRGKAVISKAWGEPVSRHEEGHGACEFYGGDLAGIDAKLHYLQSLGVTALYLNPIFDSPSNHKYDTQDYYSVDPHLGTNAQFAELTRNLHQRGMKIILDAVVNHTSTDHPWFCPPLGAQSNPDSPWRSFYTFDTEGDYVSWKGIRSLPKLDFSSEQVQDAVYRADNAILRYWMRAPYQIDGWRFDVIHMLGERGSAMGNSGHVRAIRGAVKQENPDAYVLGEHFFEASQWLQGDQEDGAMNYYGFAHPIRAFLAGQDIAYHPIRISAEELDRWLKLARAHIPFKNQLAQFNLLDSHDTARFLHLLGEDKQRMRLAATLLITYIGVPSIYYGDEVGLSGGNDPDCRRCFPWDTTDWDHVLHDHYRRLIQIRKQRPALRRGDIQTLYAGPHSYVFARTLQSDQVVVACNRHPTEPRTISLPLWQTASPASRFTDAFNGDKFEVVQGEVQLTIPANSARVLLSS
>NZ_CP038443.1|WP_005325473.1|1132628_1133048_+|META-domain-containing-protein
MPRFLLLLLALLLLSACSSTPRFASQDLQHHHWVLDKLDGQAIPSSRINPPDIEIGEHLTVNGIAGCNRYFGQGHLEDDRLWVTSLGNTEMACLAPLDAVEQAVLTTLTEGATLSGTPQTLILTGKQHRLEYKLRDWVY
>NZ_CP038443.1|WP_171272877.1|1131095_1132457_+|molecular-chaperone
MFIGFDYGTSNCAVAVMEQGSPRLLTLSGSHYLPSTLHAPHRDAIAGLLAERLASTQQAEYLKLRGPVVTRAQAVRRQMREEGLIDELSFGGAALERYLEEPDDGYYIKSPKSFLGAYGLKAPQIALFEDIVCAMMLHVRHEAEQQTGAPVRQAVIGRPVNFQGLAGEESNRQAIAILGEAARLAGFERVEFLYEPVAAGFEFEARLSEDAVVLVVDIGGGTTDCSMLRMGPSHRDRLDRSGDLLGHSGQRIGGNDFDIRLTVEGMMPLLGMHETLKTGKPLPHPLFWDAAAINDVSAQSRFYSLDTARQLQDLQLDSQPGSKLSRLASLRAHKLSHQLVWRAEQGKIALSDHELNHQTLNELEKGLEAELTRPQLASASAPLLEKIGELMDEAIAAAGVAPDRIFVTGGSARSPLIKAFIRQKLPSVPLEGGDDFGSVASGLARYAERLFAG
>NZ_CP038443.1|WP_005325476.1|1129826_1130816_+|2-hydroxyacid-dehydrogenase
MRVAVFSTKSYDKEHFNQANSQYGFELEFFDVRLEAKTARLAHHFPVVCLFVNDDADREVLTELAANGTKVIALRCAGYNNVDLVAAKELGLKVVRVPAYSPEAVAEHAVGLMMTLNRRIHKAYQRTRDANFSLEGLVGFNMHGRTAGIIGTGKIGIATLRILKGFGMRLLVSDPYPNQAAIDLGAEYVDIDTLLRQSDVISLHCPLFKENYHLLNKEAFAKMKDGVMIINTSRGGLLDSNAAIEALKTSRIGALGLDVYEEEEDLFFEDKSNEVITDDVFRRLSACHNVLFTGHQAFLTREALHAIADTTLGNLQAIESQGRSDNEVE
>NZ_CP038443.1|WP_171272876.1|1129275_1129749_+|CreA-family-protein
MTHPSPLILPLLLGMLFAGPALADKADPVGEVSTAFKLVGPNHKILVEAFDDPKIAGVACYLARPKTGGVKGGLGLAEDPSHASLSCHQIGPITLPAKLKAGEEVFDVSTSLVFKEQKVVRFYDEKRNALVYLTYSTKLVDGSYKSAVSAVPIMPWG
>NZ_CP038443.1|WP_171272875.1|1128808_1129279_+|DUF962-domain-containing-protein
MKRLDDWFSDYGQSHQHPVNVAIHKVAVPGIYLCTLALLWCLPAGPLPPSLNWAALVAIPVLAFYLQLSFALFVGMAILTALGLAFCHSWQGPLLWPALCGFALLWVAQFVGHRIEGKRPSFLADLQFLLVGPAWVLASLYRRLGIPYRGKPKEKP
>NZ_CP038443.1|WP_171272874.1|1127824_1128688_+|hypothetical-protein
MKWLIKLCLCLPLLAQAQTLTVKVPSRPINDLDSEYQLKLLELALDRAGQPYKLERVDLNLNQFTLQQELRKGKTINVFWMGTSSALESALIPVPIPLFRGLEGLRLSFIHGDAQEKFSQVNTLADLKQLKAAQGVGWADNKILEQAGIATYAGRYSNLFRLINDGDKLDFFPRGLVEIFAERRELAAQYPNLAIEQHLLIRYPFAEFFFVSPESPKLARAIQTGLERAYVDGSFMKFFHENPRVREALASANLEQRVTISLPNPDMTPLLRSIPAQYWDYPPRQGQ
>NZ_CP038443.1|WP_005328486.1|1127250_1127637_+|TraR/DksA-C4-type-zinc-finger-protein
MCDFMTEDQLAFYKGQIERQILELEERLNSQASQAIATDTNEMADEIDRASIEEARRLELNRIEHDKLHLRKLKGALKRINEGDFGYCESCGDEISLKRLQARPESRFCVECQSTKEFNDTHVFRRVA
>NZ_CP038443.1|WP_171274292.1|1139164_1139872_+|two-component-system-response-regulator-RstA
MPRVLFVEDDPDIGQLISGWLGRHDIEVLLETRGDLALSRVEAEQPDLVLLDIMLPGQDGLSLCRDLRPRFAGPIVMLTSLDSDMNQILSLELGANDYILKTTPPPVLLARLRVQFRQQGQTPQPAALSAPPQRLQFGSLRIDGPGRDVRLDGNSVPLSTADFDLLWELACHAGQILGREALFRSLRGRDYDGQDRSMDVAISRLRRRLGDDSNNPTRIKTVRQKGYLLVPQAWE
>NZ_CP038443.1|WP_171272880.1|1139990_1141316_+|two-component-system-sensor-histidine-kinase-RstB
MRRLFIQFYLLLIGCFGLAILLIGLVYQVSAERAGDRYLERMMQGSLGLLTGELAWLPPAHWAARMAEQSRQLNLPLQLGALANQPLAREDQAFLEAGNIVIVEEDDTFLQRIPGTDQVLIVGPVPYLSYLHELHWVDVGLLLLIGLSLGLPILLWLRPHWRGLQQLEQTARRVGDGDLSSRTGLPPGSSLGRVGRTFDQMAEQLQAMLASRKQLTDAIAHELRTPLVRLRYRLAMLAEPPTTEEQQGLERDLGALDALIEEMLTYARLDRPELPLQCSELELASWAGSRLPDWQALRPQTRLDFVRPAMALPWRGDIRLLDRALENLIGNALRHATSRVSLAMSRQQDHYLLEVADDGPGIDPALAPQIFEPFVRLDQSRDRRTGGTGLGLAIVRSIARHHGGEVQLLPSSSGARFCLRLPVHLDTNRHQSLTEPQVEQP
>NZ_CP038443.1|WP_042649209.1|1141370_1141550_+|hypothetical-protein
MKKLIPLSLAAVFALTSGFTMAATPTKAAAPHATQTKVVKKHHKATHAAPAVKVAPKTK
>NZ_CP038443.1|WP_171272881.1|1141616_1142873_-|malate-dehydrogenase
MSDLRHDLRQQALDYHAQPIPGKIAIALTKPAETARDLALAYSPGVAEPVREIAANPDDAYRYTGKGNLVAVISNGTAILGLGNLGPLASKPVMEGKALLFKRFAGIDAIDIEVKHETSAQFIDTVAAIADTFGGINLEDIKAPECFEIEQALIARCDIPVFHDDQHGTAIVTAAGLLNALEVQGKRIEQSRIVCMGAGAAATACMDLLIKCGAAPHNIFMLDRQGVIHSGRTDLNQYKQRFANETPLRTLMDVIDGADVFVGVSGPDVLPAEAVALMAPNPVIFACSNPDPEIKPALAHGVRSDLIMGTGRSDYPNQINNVICFPFIFRGALDARASRINDAMKIAAVEAIRGLVKEPVPAEVLTAAGVSELTFGKDYVIPKPMDARLLPRVARAVALAAVASGVARIALPADYMQD
>NZ_CP038443.1|WP_171272882.1|1143052_1144486_-|DUF2867-domain-containing-protein
MRNCLVMGAAGYIGSYLVPHLQGLGYRVIAGARRPCRLPEGVEFRLADSLKPITLLPPLAGVDTVFYLVHAMGAGAGFHRLEQQGVKNFAAAARAAGVRRIIYLGAIQPIPCNSRHLNSRRHCGELFREAGVPTVELRAGIIIGPGSAAFEVMRDLVFNLPMMVTPKWVRSRTPPIALSNLLHYLGGLVEADGVDGRIFNAAGPELLSYQQQLQKFAAHIGKRCPIIPIPFLSPRLSAWWLQFATSVPQPIAKALVGGLKHDIPADDGPLRALLPQHLLSFDEALTESLALEQKLGAEQQGQETPLGLRWRHPEYGFYDRTASGEAECLASPEVVWQELQQLGGEQRYFYMNELWVVREWMDHLIGGPALTRGRTNPDRFVKGDMLDSWQILGVDEGRRLDLLFNMKAPGVGRLEFNIQPQESGLTRLRVTAHWHPQGAWGLAYWLAMLPFHLFIFQGMTEAIARQAEQRAGIPVMD
>NZ_CP038443.1|WP_041206593.1|1144612_1144828_-|50S-ribosomal-protein-L31
MKAGIHPDYVAITAKCSCGNVINTFSTLGKDLNLDVCSECHPFYTGKQKEVSSGGRVDKFNKRFGGLTAKK
>NZ_CP038443.1|WP_171272883.1|1144975_1147183_+|primosomal-protein-N'
MDSSQTLDLVRVAVPVPLRRHFDYLSPLPLPAPGCRVEIPFGPQTLVGLVVDHPTESQVPRNKLKPIKRVLDSSPVLGPDILALMAWSASYYQHPLGEVLPHALPVLVRKGEPAAYRELEFWFVTEAGMAIDLNELKRAAKQQQALALLRKGPQTPSALKQEEIQSAALTALEKKGLLEKRSLEPSHDGDWATHFDAGEGLRLNGEQALAVAAVTSQSDKFGAFLLDGITGSGKTEVYLSILEPLLKAGRQALVMVPEIGLTPQTINRFRRRFKVPVVAMNSAMNDRERLDAWLACRDGGAAILIGTRSAVFTPFKNLGIIIIDEEHDGSFKQQDGFRYHARDLAVMRAHRAGIPILLGSATPSLETLHNARTGKYHHLSLTRRAGNAQTARQVILDIKSVRLQAGLSPQLEQLMAEHLAAGNQVMLFLNRRGYAPALICHQCGWSAACERCDAWYTWHQAGRRLHCHHCDSVRPLPHSCPECGSNELIGSGVGTEQLEQLLTTVFPQYPVVRIDRDNTRRKGELETHLGDIKAGKYKILIGTQMLAKGHHFPDVTLVGLLDVDGALFSADFRAAEKLAQLYTQVAGRAGRASKPGLVVLQSHHPEHALLQDLTQNGYGHFADTALKERHLLGLPPFSYQGLFRAEANGRDEVQLFLTRLAETLRSARYPQVQVLGPISGFMERKAGKFRMQLLVQGPSRAPLAQLLDWAVKELDGWPETKRVRWSLDIDPTELN
>NZ_CP038443.1|WP_041206594.1|1147373_1148495_-|porin-OmpA
MNRSMLAVLIGALMATGTVQAAAQDNTWYVGGKAGWSNFYGVDYDDQVKELLDAFDPGQDHSDLGLGAFAGYQVNRNVAVELGYDWLGKYQVDQRFSSNGVEAGLDGEAKAQMIQATMKIGFPATEALDIYGRLGGAYAWTDSSISAWANDGTSNLSASGGGKYHGAAFVGALGIEYAIDKDWAARLEYQYTTPLGKDSLDESGIELDNGLLSVGMLYRFGQIGDEPVVPTPAPEPAPAPVLVEKQFSLDSDVLFEFNKATLKPEASQALDNLFAQILAANPKDGVATVIGHTDRIGSDAYNQSLSEQRARSVADYLIAKGLFADKVRAEGRGESSPVTGGSCPDGAKAQMIACLAPDRRVEVRLTGVSQAAE
>NZ_CP038443.1|WP_171272884.1|1148986_1149862_+|DMT-family-transporter
MNYLERLAPILFLLMWSSGAIFVKMGLENASVWSFLTLRATGAFLLMGVIYLCFKINSKTKLTPSILARVVVTGLLLQVFYQAFYFLSIRYELSPGLVSIVLGLQPIMTILFGGDKASPYKLLILLIGFSGLGLAIFGAKDVSQVTPLGVSFAILSVMAISIGSLFQKTIPMTPLESGMLQNGCASIVFVATSLIIGWHVNWSPNFVFSLSWMIVVVSTGAVLLLFYMIQRNSASKVSVLFYLVPILTMFFDFIIFDTEITTTTIMGALIVIASVKLFSLPSRRTSAKMLS
>NZ_CP038443.1|WP_005323666.1|1149900_1151439_-|threonine-ammonia-lyase,-biosynthetic
MVSAADYLRKVLLSPVYEAARVTPLQTLKKLSERLGNHVALKREDLQPVHSFKLRGAYHKIATLSAEQKSHGVVAASAGNHAQGVALSAAKLGIKAIIVMPKTTPDIKIDAVRRLGGNVMLFGNSFDEAYGESRRLAELEGYTLIPPFDDVEVIAGQGTIGKELLEQDTHLTHVFVPVGGGGLAAGVAVYIKQLLPDVKVIGVEAEGSACLKAAMEAGEPVNLERVSLFADGVAVKRIGEETFRLCNQYLDEVVTVSNDQICAALKDIFDDCRAIAEPSGALSLAGLKAYSEREQVKGGRMAAILSGANVNFHSLRYVSERCEIGEKREGMLAVTIPERKGAFLDFCRQLGPRMVTEFNYRYADAVQASLFVSVRLTGGDEELGQIIDQLGGNGYPVVNMTESELAKNHVRYMIGGRPARPLGERLYSFKFPEQPGALMRFLETLGCRWNISLFHYRNHGADYGRVLCAFELPDEDVAAFHDYLHEIGYGWKEVSEDPAYRLFLASGDERMK

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Crispr_ID: NZ_CP038443_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_5

1939348-1939489

Orphan

Consensus_repeat	Method
GGCGGCCAGAGGGCTGAAAATGGTAATTGATCGTCATTTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_5

>merge|NZ_CP038443|5|1939348-1939489|CRISPRCasFinder
GGCGGCCAGAGGGCTGAAAATGGTAATTGATCGTCATTTTTCCCCGACCGTCATGGAGGATTACGGCACCCTTCGCCGTCGTCAGTTCCTCATCGGGGCCGGCGGCCAGAGGGCTGAAAATGGTAATTGATCGTCGTTTTTC

>NZ_CP038443|5|5|1939348-1939489|CRISPRCasFinder
GGCGGCCAGAGGGCTGAAAATGGTAATTGATCGTCATTTTTC	CCCGACCGTCATGGAGGATTACGGCACCCTTCGCCGTCGTCAGTTCCTCATCGGGGCC
GGCGGCCAGAGGGCTGAAAATGGTAATTGATCGTCGTTTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171273195.1\|1939566_1940592_+\|GspK-family-T2SS-minor-pseudopilin-variant-ExeK	unknown	unknown	gnl\|CDD\|377165
NZ_CP038443.1\|WP_005327466.1\|1937250_1937682_+\|GspG-family-T2SS-major-pseudopilin-variant-ExeG	unknown	unknown	gnl\|CDD\|130771
NZ_CP038443.1\|WP_005327465.1\|1937720_1938272_+\|GspH-family-T2SS-minor-pseudopilin-variant-ExeH	unknown	unknown	gnl\|CDD\|130769
NZ_CP038443.1\|WP_171273193.1\|1930752_1931151_-\|ribosome-associated-heat-shock-protein-Hsp15	unknown	unknown	gnl\|CDD\|182397
NZ_CP038443.1\|WP_171273194.1\|1931290_1932220_+\|GspC-family-type-II-secretion-system-variant-ExeC	unknown	unknown	gnl\|CDD\|273770
NZ_CP038443.1\|WP_043128494.1\|1948322_1949588_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|273283
NZ_CP038443.1\|WP_171273200.1\|1945632_1946301_-\|GMP/IMP-nucleotidase	unknown	unknown	gnl\|CDD\|237882
NZ_CP038443.1\|WP_171273201.1\|1946447_1947056_+\|ADP-compounds-hydrolase-NudE	unknown	unknown	gnl\|CDD\|183303
NZ_CP038443.1\|WP_041204975.1\|1929762_1930647_-\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP038443.1\|WP_005327486.1\|1927987_1929613_-\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NZ_CP038443.1\|WP_171273196.1\|1940706_1941891_+\|GspL-family-type-II-secretion-system-protein-ExeL	unknown	unknown	gnl\|CDD\|273768
NZ_CP038443.1\|WP_005327468.1\|1935796_1937017_+\|GspF-family-T2SS-innner-membrane-protein-variant-ExeF	unknown	unknown	gnl\|CDD\|273980
NZ_CP038443.1\|WP_106885762.1\|1947097_1947910_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|130398
NZ_CP038443.1\|WP_171273198.1\|1943283_1944117_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP038443.1\|WP_005327470.1\|1934289_1935795_+\|GspE-family-T2SS-ATPase-variant-ExeE	unknown	unknown	gnl\|CDD\|131585
NZ_CP038443.1\|WP_171273199.1\|1944262_1945531_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP038443.1\|WP_043128621.1\|1938283_1938643_+\|GspI-family-T2SS-minor-pseudopilin-variant-ExeI	unknown	unknown	gnl\|CDD\|376798
NZ_CP038443.1\|WP_041204980.1\|1932241_1934290_+\|GspD-family-T2SS-secretin-variant-ExeD	unknown	unknown	gnl\|CDD\|274175
NZ_CP038443.1\|WP_005327455.1\|1941887_1942379_+\|GspM-family-type-II-secretion-system-protein-ExeM	unknown	unknown	gnl\|CDD\|377391
NZ_CP038443.1\|WP_171273197.1\|1942476_1943235_+\|GspN-family-type-II-secretion-system-protein-ExeN	unknown	unknown	gnl\|CDD\|376490

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171273195.1\|1939566_1940592_+\|GspK-family-T2SS-minor-pseudopilin-variant-ExeK	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	3.32208e-98
NZ_CP038443.1\|WP_005327466.1\|1937250_1937682_+\|GspG-family-T2SS-major-pseudopilin-variant-ExeG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	6.26796e-64
NZ_CP038443.1\|WP_005327465.1\|1937720_1938272_+\|GspH-family-T2SS-minor-pseudopilin-variant-ExeH	gnl\|CDD\|130769	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.02289e-38
NZ_CP038443.1\|WP_171273193.1\|1930752_1931151_-\|ribosome-associated-heat-shock-protein-Hsp15	gnl\|CDD\|182397	PRK10348, PRK10348, ribosome-associated heat shock protein Hsp15; Provisional.	9.51592e-45
NZ_CP038443.1\|WP_171273194.1\|1931290_1932220_+\|GspC-family-type-II-secretion-system-variant-ExeC	gnl\|CDD\|273770	TIGR01713, Type_II_secretion_system_protein_C, type II secretion system protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	3.10295e-63
NZ_CP038443.1\|WP_043128494.1\|1948322_1949588_+\|serine/threonine-protein-kinase	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	6.51917e-141
NZ_CP038443.1\|WP_171273200.1\|1945632_1946301_-\|GMP/IMP-nucleotidase	gnl\|CDD\|237882	PRK14988, PRK14988, GMP/IMP nucleotidase; Provisional.	8.20761e-96
NZ_CP038443.1\|WP_171273201.1\|1946447_1947056_+\|ADP-compounds-hydrolase-NudE	gnl\|CDD\|183303	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.	1.29706e-121
NZ_CP038443.1\|WP_041204975.1\|1929762_1930647_-\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	4.35169e-133
NZ_CP038443.1\|WP_005327486.1\|1927987_1929613_-\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NZ_CP038443.1\|WP_171273196.1\|1940706_1941891_+\|GspL-family-type-II-secretion-system-protein-ExeL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	1.33343e-84
NZ_CP038443.1\|WP_005327468.1\|1935796_1937017_+\|GspF-family-T2SS-innner-membrane-protein-variant-ExeF	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP038443.1\|WP_106885762.1\|1947097_1947910_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|130398	TIGR01331, 3'2'5'-bisphosphate_nucleotidase_CysQ, 3'(2'),5'-bisphosphate nucleotidase, bacterial. Sulfate is incorporated into 3-phosphoadenylylsulfate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulfate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. This model describes a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle. [Central intermediary metabolism, Sulfur metabolism].	2.62258e-97
NZ_CP038443.1\|WP_171273198.1\|1943283_1944117_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	5.05374e-16
NZ_CP038443.1\|WP_005327470.1\|1934289_1935795_+\|GspE-family-T2SS-ATPase-variant-ExeE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP038443.1\|WP_171273199.1\|1944262_1945531_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP038443.1\|WP_043128621.1\|1938283_1938643_+\|GspI-family-T2SS-minor-pseudopilin-variant-ExeI	gnl\|CDD\|376798	pfam02501, T2SSI, Type II secretion system (T2SS), protein I. The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. As members of the T2SJ family, members of the T2SI family are pseudopilins containing prepilin signal sequences.	2.57497e-27
NZ_CP038443.1\|WP_041204980.1\|1932241_1934290_+\|GspD-family-T2SS-secretin-variant-ExeD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP038443.1\|WP_005327455.1\|1941887_1942379_+\|GspM-family-type-II-secretion-system-protein-ExeM	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	5.17326e-49
NZ_CP038443.1\|WP_171273197.1\|1942476_1943235_+\|GspN-family-type-II-secretion-system-protein-ExeN	gnl\|CDD\|376490	pfam01203, T2SSN, Type II secretion system (T2SS), protein N. Members of the T2SN family are involved in the Type II protein secretion system. The precise function of these proteins is unknown.	3.97952e-54

>NZ_CP038443.1|WP_043128621.1|1938283_1938643_+|GspI-family-T2SS-minor-pseudopilin-variant-ExeI
MKARGMTLLEVMVALAVFAIAGLAVMKTASEHLSGLNYLEEKTLATWVVENQLVQQKLEAKWPGDSWVEGNEELAGQTWYWRYRGVATSDNNFKALDMEVRTAPKAESPVAMIRTYISR
>NZ_CP038443.1|WP_005327465.1|1937720_1938272_+|GspH-family-T2SS-minor-pseudopilin-variant-ExeH
MKPYRQAGFTLLEVLLVAMLMGLVATAVTLSMGGARGDRELDKQARRFMATLQQAQEYSVMDGRLLGLRVEESGWQFMSRNPKDRKWQALTGDKILGQVQLPEEMTLTVELEGFSWRTDSDEKNEQGRDEKERTPQIFVFPGGELTPFMLTLSQQVDDEKYLRTVKGDEFGRLSLLEDEEEEE
>NZ_CP038443.1|WP_005327466.1|1937250_1937682_+|GspG-family-T2SS-major-pseudopilin-variant-ExeG
MHKRRQAGFTLLEVMVVIVILGILASLVVPNLMGNKEKADQQKAVSDIVALENALDMYKLDNNRYPTTEQGLDALVNKPTASPEPRSYREGGYIKRLPQDPWGNPYQLLSPGQFGKLDIFSMGLDGEAGTDDDIGNWNLKDFQ
>NZ_CP038443.1|WP_005327468.1|1935796_1937017_+|GspF-family-T2SS-innner-membrane-protein-variant-ExeF
MAAFEYKALDGKGRNKSGVLEGDSARQVRQLLREQGLTPLEVNETTEKAKREANRFVLFRRGASTSELALITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSLVATVRSKVVEGYSLADSLGAFPHVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYPIVLTLVAVGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIGTSELMQHYGLWFLLLLFIGGFVWRWWLTDAGRRRHWHQVVLRLPVIGRVSRGLNTARFARTLSILNASAVPLLEGMKISGEVLSNDFARHRIGEATERVREGTSLRKALDETKIFPPMMLHMIASGEQSGELDSMLERAADNQDREFETQVNIALGVFEPMLVVSMAGVVLFIVMSILQPILELNNMVNL
>NZ_CP038443.1|WP_005327470.1|1934289_1935795_+|GspE-family-T2SS-ATPase-variant-ExeE
MAAYQLDGSELPAPLPELPFAFARNFGVILTERQGAPVLLCRQGVTPQTLLEVRRVVGCTFVVEQLGHDEFETLLTAHYQRDSSEARQLMEDLGNEMDFFALAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIESFLLSSSLLAVLAQRLVRTLCPDCRAPHPITEQERIAMGIELAPDQQMWRSVGCEQCNHTGYRGRTGIHELVVIDEAVREAIHSASGELAIERLIRGHTPSIRRDGIDKVLQGQTSLEEVLRVTRED
>NZ_CP038443.1|WP_041204980.1|1932241_1934290_+|GspD-family-T2SS-secretin-variant-ExeD
MTNKGKGWRLATVAAALMMTGSAWATEYAASFKNADIEEFINTVGKNLNKTIIIEPSVRGKINVRSYDLLNEDQYYQFFLSVLDVYGFAVVPMNNGVLKVVRSKDAKTSAIPVVDDTNPGVGDEMVTRVVPVRNVSVRELAPLLRQLNDNAGGGNVVHYEPSNVLLITGRAAVVNRLVEVVRRVDKAGDQDMDVIKLKYASAGEMVRLVTNLNKDGNNQGANASLLLSPKVVADERTNSVVISGEPKARARIIQMVRQLDRDLQSQGNTRVFYLKYGKAKDLVDVLKGVSSSIEADKKGGAATGGGASIGGGQLAISADETTNALVITAQPDVMAELEQVIAKLDIRRAQVLVEAIIVEIQDGDGLNLGVQWANANGGGTQFTNTGLPIGPAIIAGKDYDDNGNTDGLENLLGDFSGMAAGFYKGDWAMLVTALSTNTKNDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSSVAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQISKVPLLGDIPVLGYLFRSTSNTTSKRNLMVFIRPTILRDANVYSGVSSNKYTLFRAEQLNLAAEEGYATSPARQVLPAYGQDVMMSPEVQQQIERMKAQQQSTATGAKTQVQGQPFVQSKP
>NZ_CP038443.1|WP_171273194.1|1931290_1932220_+|GspC-family-type-II-secretion-system-variant-ExeC
MPYTIANRFGCQNILINMTLPFRDDLLGSLLARCKTVPLSRFSQPLFWLLLLLLAQQCAVLTWRLFELAQPSRAVPWQPAITSGQSAGPSRLDLGNVSRLSLFGKAQQLQADKAAQAALIDAPKTQLNAQLNGVLASSDPAKSIAIIAHNGLQNSYGIGDYIDGTQARIRQVFADRVIIARDGRDETLMLDGEEYGKPLPKATRQGAALSSVRSELMSNPGKITDYLNISPVRVDGRMVGYRLNPGSNPEMFNQLGLVANDLAVSINGLDLRDNAQAMQAMQQVAGATEMTVTVERQGQLYDVYVGLSE
>NZ_CP038443.1|WP_171273193.1|1930752_1931151_-|ribosome-associated-heat-shock-protein-Hsp15
MSNPAQISLLVRLDKWLWAARFYKTRSLARDQIDGGKVHYNGQRSKPGKTVEVGALVRFWQGQDEREVRVLQVSEQRKAAPLAQLLYEETEESLKKRAQNSEARRFNSQFAPSPERRPDKQERRQLIKVKQY
>NZ_CP038443.1|WP_041204975.1|1929762_1930647_-|Hsp33-family-molecular-chaperone-HslO
MSNQDLLYRYLFEEYEVRGELVQLDSTYRHIVDAQNYPVQVQKLLGELLVATSLLTATLKFEGSITVQLQGDGPVRLAVINGDHNQQLRGVARHEGDLPTDDKLQSLIGNGQLVITITPEEGERYQGIIALEADTLAACLEQYFAQSEQLATRLWIRTGHHEGTPRAAGILLQELPARSEDHGADFDHLIQLTSTIKDEELFGLEAEEILYRLYHQDKVRVFDPQAIEFRCTCSRARCEGALLQIEKEEAVAMVQELGKIDMHCDYCGTHYQFDGIDIETLFSGAPGNDANKLH
>NZ_CP038443.1|WP_005327486.1|1927987_1929613_-|phosphoenolpyruvate-carboxykinase-(ATP)
MTIVVEPALAQQLKLDQYGIKNSQEIVRNPSYEQLFAEETRPDLEGFERGVVTELGAVNVNTGIFTGRSPKDKYIVKDATTQDTVWWSDQGKNDNKAITPEVWSHLKSLVTKQLSGKRLFVVDGFCGANPDTRLAVRIITEVAWQAHFVKNMFIRPSDEELKTFKPDFVVMNGAKCTNPNWQEQGLNSENFVAFNMTEKMQLIGGTWYGGEMKKGMFSMMNYFLPLRGIASMHCSANVGKDGDVAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDDHGVFNFEGGCYAKTIKLSKEAEPDIYNAIRRDALLENVTVAADGTIDFDDGSKTENTRVSYPIYHIENIVKPVSKAGHANKVIFLTADAFGVLPPVAKLTKEQTKYHFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLSLHPTKYGQELVKRMEAAGAEAYLVNTGWNGTGKRISIKDTRAIIDAILDGSIEQAPTKVLPIFNLEVPTELPGVNPAILDPRDTYADQAEWDAKAQDLAQRFIKNFERFTDNDEGKRLVAAGPQL
>NZ_CP038443.1|WP_171273195.1|1939566_1940592_+|GspK-family-T2SS-minor-pseudopilin-variant-ExeK
MAVKRSRGPSRTTPGRQGGMALLVVLLILSVMVIIASNMSGRLQLELRRTSNLTAGKQAWWYAMSAEALVIKVLNQDFKDDPDVVNLGQNWARQDAVFPVDDGTLSGRVRDLQSCFNLNSLSLALKEGESGDDLEAQPYQFKAFRALLEALEVDEYEAVQLTDAIRDWTDKDTQLVSSNGAEDAYYEGLNPPYLVANQWLLGTDELRAVRGVSSELYARLAPYVCTLPSDKLVVNINTIKPEQAALLVGLYQGKIGLDDAKQVLTSRPKKGWKEKKEMTDELPVQPGAITGLDAALDIKSNFFEARLLAEVGDVRARLETVFQRGKDNKLVMLRRLNDGAE
>NZ_CP038443.1|WP_171273196.1|1940706_1941891_+|GspL-family-type-II-secretion-system-protein-ExeL
MSESLVIRLGTNAQQPVHWLVWSTQEQEIIASGILASAHALGELQERAGGRPVVTLVPGSDLIFRRVSLPGKYSRQAAAALPYLLEEQIASDVDELHLVVLAHQGNDVDLMAVDKAKMQAWLAWLQQAGLKTLQLLPDVLALPPATEGWSALQLGAEWLIRQGPVQGIVADEPLLAMLLAAQPEPVTLYSHTPIPAMAAGNWRGADPELPMLLLAKGALACQANLLQGPYRPQTEYARYWLQWRKVAVVAGILLLVALTQRGVHLHQLAEQDKALKAEIRQVYTRIFPGETRIVNVRSQMAQHLKSLGQTPQDGILLLLTELAPVFAEVPGLKPEVLRFDAGRGELRLQVTAPGFTEIERFRELAGKRFEVQQGEVRSTEGKVEGALVLKGKSS
>NZ_CP038443.1|WP_005327455.1|1941887_1942379_+|GspM-family-type-II-secretion-system-protein-ExeM
MMDKLQIWWHGISPREQRLVAVGGGILLLGLCYWVIWQPVANRIDERERQVANQQQTLAWLKEKGQEVLAMQGGQGRQIDTSGTLDGVVNRTAFNQKIKIARLQPQGQELQVWIDTVPFDDLLLWLATLSDQYGVQVQIIEVAREGLAPGLVKVRRLQLSRPQ
>NZ_CP038443.1|WP_171273197.1|1942476_1943235_+|GspN-family-type-II-secretion-system-protein-ExeN
MKQKVLIAVLFLTVYLMFLLARLPATLVVRHLPLPPNLVQLEGVSGTLWSGQIARLQYASESLTQLRWELDGWSLLRLAPEVSLRFGERAGLNGQGVIGWNGAAFGRDITLNAPAPWVLARVPMGLPFPLTAAGQLQLKVDQFAQGKPWCEELYGNLNWYDAQADTPAGKLPLGDPEVKLTCLDSRLVAEIKQGSEAVQVLGKLELQANRQYLFQGTLKPGPALPEQMKQGLPFLGQPDGQGRFPLRYQGRI
>NZ_CP038443.1|WP_171273198.1|1943283_1944117_-|LuxR-family-transcriptional-regulator
MSQPLATDSLTQSLTAVVDALHSPAFAAALVHLIQQQVAFDCALLLGVGQRPVYLHDNLSHQRALLFDRYLTSHFSQDPFMQALQDGLPAGVWTLAQVSKGRLDPEYRHHFYQATGWQEEVGLILPVRDGFTLMLFLGRLDKRQALRPEERVKLEALFPLVHSLCRQQWREAVPLLAQNPARPDGSDLKATVEQAIASVGGDRLTRRERQVAGLLLQGLDTEAIAAELGIGGGTVKNHRKHLYGKLRLGSRAELFNLFLNHLITTPLSPLPPEEPAP
>NZ_CP038443.1|WP_171273199.1|1944262_1945531_+|tyrosine--tRNA-ligase
MFDPHLLTDLTERGLVAQMSDPASLAAHLAQARTLYCGFDPTAGSLHIGHLVPLLMLRRFQLAGHTPVALVGGATGLIGDPSFKATERSLNSSETVQGWVASLSAQIRVLLPASEGLAAPVLVNNADWMGQMSALDFLRDIGKHFSVNAMLARESVRQRLARPDQGISFTEFSYALLQSQDFAVLNQRLGCTLQIGGNDQWGNITSGMDLTRRLHQAQVHGMTLPLITKADGTKFGKTEGGAIWLDPALTSPYAFHQFWLGTADEDVYRFLRYYSFMPLAAIRELEVEDAGRQGRKQAQQVLADELTELVHGKGALAAARRIGELLFSGDVARLGESDLAQLAQDGMPSCHIEGETDLVTLLVESGLASSKRMARELLAAGAISLNGAIRQDERLSAVDRLFGRYLLLRRGKKQYRLVEWAD
>NZ_CP038443.1|WP_171273200.1|1945632_1946301_-|GMP/IMP-nucleotidase
MPTPLPWHQIDTVLLDMDGTLIDLHFDSHLWQQLVPERYAARLGLPLADAKAQIDAHYQAVSGTLDWYCVDYWSRTLGLDIRALKQEILDKIQWRPHVIPFLAALRAAGKQLVLFTNAHPASLSVKDARLGLASHLDLMVSTHELGWSKESQHCWQALAERLAFDPARTLFVDDSERILRAAADYGIGYQLAIQNPDSRQPEQQITAFPAIRDYAELLPLAV
>NZ_CP038443.1|WP_171273201.1|1946447_1947056_+|ADP-compounds-hydrolase-NudE
MSDPHKCKPEHVRVEAMAHDKRKPEIIKAELVAESRLFKVESLHLKFSNGEERVYERMRGGNRGAVMVVPLFDAHTLLLVREYAAGTHSYELGFPKGLIDPGEDAFEAGNRELMEEAGFGARDLIPLKQVSLAPGYFSSRMDILLARDLYPEQRVGDEPEPLEVIPWPLNRIDELLARPDFTESRSISALLLARKWLAEQES
>NZ_CP038443.1|WP_106885762.1|1947097_1947910_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MQELLAWIPGVKEIAREAGRILHEIYHGGQFERQLKEDATPVTSADLAADAYLKQALSALTPHVPVLTEEAADVPFSQRANWRQYWLVDPLDGTGEFIAGSGDFATLIALVRDNVPVLGVIYAPEADVLYWAVRGHGAFKEVNGEVHPISAMHHEHDQPDSLVVAISRRQKLENLTRRLNPAINYELIPLGSSSLKSCLVAEGAADCYVRLGPTGEWDTAAAQCIVEAAGGRILSLALQPLSYNETESLENPDFIVMGDPDLAWGKILTH
>NZ_CP038443.1|WP_043128494.1|1948322_1949588_+|serine/threonine-protein-kinase
MSSSAEVTRELSGSPSITRTGWRRHDTHWVISLFGTAVGAGILFLPINLGLGGIWPLVIVAVLAGPMTFLAHRGLARFVLSSSRPHADFTEVAEEHFGKMAGRLISALYFLSIFPILLIYGVGLTNTVESFMINQLGMDAPNRVMLSGLLVFAMIAVMMAGEKAMLRAFAFMVYPLAAILAALSCYLIPQWHWPEVTAFEGASFLNTVWLALPVTVFAFSHAAAISGFANVQRREYGEQAEAKSGLILRNTTVMLVGFVLFFVFSCVLSLSPAQLAEAKAQNVSVLSYLANITDNPVIVTLGPLIAFIAISSSFLGHFLGARESLKSLIAKPTGLSLAKADRLGIALMFFAIWGAAVINPGILGLMETLSGPVIAMILFIMPVVAIYKVEALARFRHGWTNGFILLTGSLSVSALLFSLLK

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Crispr_ID: NZ_CP038443_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_6

2811499-2811595

Orphan

Consensus_repeat	Method
GCTCAAGGGCTGATACCCCGCCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_6

>merge|NZ_CP038443|6|2811499-2811595|CRISPRCasFinder
GCTCAAGGGCTGATACCCCGCCAGCGCCAAAAGCCCGCCTGGCCTTGGAGGGCTTCACCATTGTGGCTGGCGCTCAAGGGCTGATACCCGCCAGCGA

>NZ_CP038443|6|6|2811499-2811595|CRISPRCasFinder
GCTCAAGGGCTGATACCCCGCCAGCG	CCAAAAGCCCGCCTGGCCTTGGAGGGCTTCACCATTGTGGCTGGC
GCTCAAGGGCTGATACCCGCCAGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171273509.1\|2812919_2813813_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP038443.1\|WP_005323481.1\|2821079_2822273_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP038443.1\|WP_171273513.1\|2816755_2817052_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|213767
NZ_CP038443.1\|WP_171273507.1\|2804543_2805617_+\|cytochrome-o-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
NZ_CP038443.1\|WP_171273510.1\|2813913_2814396_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP038443.1\|WP_081805857.1\|2807517_2808213_+\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|182628
NZ_CP038443.1\|WP_042648133.1\|2799392_2799833_+\|azurin	unknown	unknown	gnl\|CDD\|259989
NZ_CP038443.1\|WP_171274346.1\|2822327_2823752_-\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	unknown	unknown	gnl\|CDD\|236509
NZ_CP038443.1\|WP_171273506.1\|2802137_2802467_+\|DUF3634-family-protein	unknown	unknown	gnl\|CDD\|315081
NZ_CP038443.1\|WP_005332143.1\|2815115_2815358_-\|DUF3297-family-protein	unknown	unknown	gnl\|CDD\|371696
NZ_CP038443.1\|WP_171274345.1\|2811665_2812769_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP038443.1\|WP_139751817.1\|2803599_2804043_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP038443.1\|WP_041205382.1\|2800025_2800229_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_139751819.1\|2805620_2807597_+\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_CP038443.1\|WP_171273508.1\|2808212_2808542_+\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|182568
NZ_CP038443.1\|WP_171273511.1\|2814406_2814835_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP038443.1\|WP_171273505.1\|2800242_2800803_-\|HutD-family-protein	unknown	unknown	gnl\|CDD\|377578
NZ_CP038443.1\|WP_171273504.1\|2798057_2799098_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|182478
NZ_CP038443.1\|WP_171273514.1\|2824833_2825433_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_CP038443.1\|WP_171273512.1\|2815455_2816772_-\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|341494

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171273509.1\|2812919_2813813_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.57242e-94
NZ_CP038443.1\|WP_005323481.1\|2821079_2822273_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP038443.1\|WP_171273513.1\|2816755_2817052_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	7.46363e-07
NZ_CP038443.1\|WP_171273507.1\|2804543_2805617_+\|cytochrome-o-ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	0
NZ_CP038443.1\|WP_171273510.1\|2813913_2814396_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	4.48585e-21
NZ_CP038443.1\|WP_081805857.1\|2807517_2808213_+\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|182628	PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional.	2.10664e-130
NZ_CP038443.1\|WP_042648133.1\|2799392_2799833_+\|azurin	gnl\|CDD\|259989	cd13922, Azurin, Azurin is a redox partner for enzymes such as nitrite reductase or arsenite oxidase. Azurin is a bacterial blue copper-binding protein. It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The copper of Azurin is tetrahedrally coordinated by a cysteine, 2 histidines, and a methionine residue. The electron transfer reactions are carried out with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Azurin can function as a tumor suppressor; it forms a complex with p53 that triggers apoptosis in various human cancer cells.	1.57574e-74
NZ_CP038443.1\|WP_171274346.1\|2822327_2823752_-\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	gnl\|CDD\|236509	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF.	0
NZ_CP038443.1\|WP_171273506.1\|2802137_2802467_+\|DUF3634-family-protein	gnl\|CDD\|315081	pfam12321, DUF3634, Protein of unknown function (DUF3634). This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.	1.65438e-20
NZ_CP038443.1\|WP_005332143.1\|2815115_2815358_-\|DUF3297-family-protein	gnl\|CDD\|371696	pfam11730, DUF3297, Protein of unknown function (DUF3297). This family is expressed in Proteobacteria and Actinobacteria. The function is not known.	1.11664e-44
NZ_CP038443.1\|WP_171274345.1\|2811665_2812769_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.30732e-26
NZ_CP038443.1\|WP_139751817.1\|2803599_2804043_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	2.10845e-20
NZ_CP038443.1\|WP_139751819.1\|2805620_2807597_+\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_CP038443.1\|WP_171273508.1\|2808212_2808542_+\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|182568	PRK10582, PRK10582, cytochrome o ubiquinol oxidase subunit IV; Provisional.	2.33044e-54
NZ_CP038443.1\|WP_171273511.1\|2814406_2814835_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	3.06008e-11
NZ_CP038443.1\|WP_171273505.1\|2800242_2800803_-\|HutD-family-protein	gnl\|CDD\|377578	pfam05962, HutD, HutD. HutD from Pseudomonas fluorescens SBW25 is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterized repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. Evidence outlined by Zhang & Rainey (2007) suggests that HutD functions as a governor that sets an upper bound on the level of hut operon transcription. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of PA5104 (HutD from Pseudomonas aeruginosa) show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.	2.2006e-57
NZ_CP038443.1\|WP_171273504.1\|2798057_2799098_-\|FAD:protein-FMN-transferase	gnl\|CDD\|182478	PRK10461, PRK10461, thiamine biosynthesis lipoprotein ApbE; Provisional.	7.69705e-150
NZ_CP038443.1\|WP_171273514.1\|2824833_2825433_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	2.00393e-96
NZ_CP038443.1\|WP_171273512.1\|2815455_2816772_-\|HipA-domain-containing-protein	gnl\|CDD\|341494	cd17809, HipA_So_like, type II toxin-antitoxin sytem toxin HipA from Shewanella oneidensis and similar proteins. This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Shewanella oneidensis HipA, a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. In the Shewanella oneidensis HipAB:DNA promoter complex, HipB forms a dimer that binds the duplex operator DNA, with each HipB monomer interacting with separate HipA monomers. The HipAB component of the complex is composed of two HipA and two HipB subunits.	6.03119e-160

>NZ_CP038443.1|WP_171273508.1|2808212_2808542_+|cytochrome-o-ubiquinol-oxidase-subunit-IV
MSHSVDNHGASHGSVKSYMIGFVLSLILTAIPFWMVMDGSASHAMVLGTVVGMAVVQIFVHLIYFLHMNTSSEERWNLVALVFTVLIIAIVVVGSLWIMYNLNINMMVH
>NZ_CP038443.1|WP_081805857.1|2807517_2808213_+|cytochrome-o-ubiquinol-oxidase-subunit-III
MWTTTYRLTRSSASKVSISTISTRWLNSMATDVLHHTHGAHEDGHHDAGATKVFGFWIYLMSDCILFATLFATYAVLVNGTAGGPTGKDIFELPFVFAETMLLLLSSITFGFGMLAMNKNKVSAVNTWLLVTFLLGAGFIAMEIYEFHHLIVNDAGPDRSGFLSAFFTLVGTHGIHVTSGLIWIIVMMVLISKKGLTERNRTRLMCLSLFWHFLDVVWICVFTVVYLMGVM
>NZ_CP038443.1|WP_139751819.1|2805620_2807597_+|cytochrome-o-ubiquinol-oxidase-subunit-I
MFGKLTLEAVPYHEPIIMVTIAGIILGGLAIAGLITYYGKWQYLWKEWFTSVDHKRLGIMYLILGMVMLLRGFADAVMMRGQQVMASAGSEGYLNAHHYDQIFTAHGVIMIFFVAMPLVIGLMNIVVPLQIGARDVAFPFLNNLSFWFTAAAVVLINVSLGVGEFAQTGWLAYPPLSGLEFSPGVGVDYWIWSLQISGLGTLLTGVNFFATIIRMRAPGMTMMRLPVFTWTALCANILIIASFPILTVTIALLTADRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILVLPVFGIFSEVVATFCKKKLFGYTSLVWATVAITVLSFVVWLHHFFTMGSGANVNAFFGITTMIISIPTGVKIFNWLFTMYRGRIEFSSPMLWTVGFIITFTVGGMTGVLLSVPAANFVLHNSLFLIAHFHNVIIGGVVFGCFAGITYWFPKAFGFKLDDVWGKRAFWFWITGFFVAFMPLYVLGFMGMTRRVSQNIDPEFHGWLVVAACGAGLIAIGVLCQLIQVVVSIRDREKNRDWTGDPWGGRTLEWATSSPPPFYNFAIEPKVTGLDAFWEAKEDGSAYRQPAKYAPIHMPKNSGAGVIIAAFSVVFGFAMIWHIWWMAIAGFVGMIATWIIHSFNDDVDYYVQVDEIERIEGQHFDNINKVA
>NZ_CP038443.1|WP_171273507.1|2804543_2805617_+|cytochrome-o-ubiquinol-oxidase-subunit-II
MRPFEVKRGLGALLLMATAGLLSGCDMALMSPKGQVGLEQKSLILTALGLMLIVVIPVIIMTVAFARKYRASNTTAKYTPDWSHSNKIEAVVWTVPVIIVAILAVITWKTSHSLDPYKPLESDVKPIQVDVISLDWKWLFVYPELGIASVNELAFPVNTPINFRVTSDTVMNSFFIPQLGGQIYAMAGMQTKLHLIANEAGQYKGISGSYSGAGFSGMKFKAIATQDQAGFDAWVAKVKQSPKMLSTMGEFDALAKKSENHPVEYFASADPKLFVNVINKFMGGMSHGGHDAAKAETMDHEAMNHDAAKAETMDHEAMNHDAAKAEPMDHAAMNHDEHAGHMATSMADKSVKAGSEE
>NZ_CP038443.1|WP_139751817.1|2803599_2804043_+|carboxymuconolactone-decarboxylase-family-protein
MSDRIQLASQVPAAVSAMMGLEAYLGGTDIPLSLKELIKLRASMLNGCAYCIEMHAEVAMKHGDSPQRLLALAAWRESPLFGERERAVLALTDEVTLIGERGLTEETYQQALALLGETLLAQCLMQVVTINAWNRIAVATRMEHKHP
>NZ_CP038443.1|WP_171273506.1|2802137_2802467_+|DUF3634-family-protein
MAWLSLLVAIALIWWLMKLGRGALFDIRLQPGKVLLKRGSVPPRFLAQAKQILQQEPVRGRILGQRDGNGVRLVFSRSIPEPVAQRLRSVFPYGDYRGVTSPPDGRNAR
>NZ_CP038443.1|WP_171273505.1|2800242_2800803_-|HutD-family-protein
MITLIKESDQLKMPWKNKQGTTAQILVSPPGSSLDKLDFDYRLSSAPIKAAGPFSKFPGYQRILLPVSGAGFVLNGHPYATFEAAHFSGDDETHCELLKKEVTDLGLIYDPKRLSANVRVLNVPFPLTLTLEADKTYLCHLLSGQLEVAGQAVAINETLVVKGEESIRLECQKKTAIAFFTLQPIG
>NZ_CP038443.1|WP_041205382.1|2800025_2800229_+|hypothetical-protein
MRAVKWVLGCCLLLMCAIALAAEPPVKKSRNGICHPKGGTYYSRTKYYEPYDSMQACLDSGGRAPKR
>NZ_CP038443.1|WP_042648133.1|2799392_2799833_+|azurin
MKKVLTLLLLSSLAAPVLADECALVIEGNDAMQYNLKEMSVPATCKEVTVTLNHTGKLPVANMGHNWVLANTADYQAVATAGMSAGVDHDYLPKDDARILAHTKLVGGGESTSVTFKTDGLAGKDLTFFCSFPGHFAMMKGAFKVG
>NZ_CP038443.1|WP_171273504.1|2798057_2799098_-|FAD:protein-FMN-transferase
MQDEDPFPGPLNLLLCLMLLTACQPAPTQTRIQGSTMGTYYAVTLSDPFPGGQAALQGEVDALLARLNQEISTYDPDSLISRFNRNAGKAPMPIPASMARIVRQGMDAGRLTRGKLDVTVGPLVNLWGFGPDKRPVKRPTAEQITQARERVGIDKLSLTPQGDHFLLGKSIPNLYLDLSTLGEGAASDEIATLLERKGVHNYLVEVAGAVRSKGHNDKGNPWRVAIVEPSDRPGAIEDVVTPNGMALSTAGSYRNYYELDGRRYSHIIDPATGEPVTHKLVSASVITPTALEADALDTALMVMGPEQAMAFATEHKLAVYLIEKTDQGFAASHTPEFAPYLVRSQP
>NZ_CP038443.1|WP_171274345.1|2811665_2812769_-|YdcF-family-protein
MKKTAIALTLTSLLALPLFVSSDAWAAPVRSLQKEQNYDQYISKRQVVDQLLADAARIFHSPARVSDAGFTAKMPSNMEQVTTLLLEAHQLEPYRTDLLISAANAQIYNGNVERAIALFEQALTAAPDDLDINTYLATWLRFKGDQAKSDGYVKRVGELNAGRAADLQRLFATVDRVVATPLKERQGRGEKKGRRAIVTLGYALNPDGSMNEILLGRLETTRALAQADPAALVILTGGVPQNRQTEGKLMADWLAKKGIDRSRIIEENYATSTVENALYSGYALARHEIEYATLVSSASHVRRGQTLLEIACWQSGPANIRIDSVAYPDKPLSALSKASPEELLGIYRDALRTYGLWSYRSAPLIER
>NZ_CP038443.1|WP_171273509.1|2812919_2813813_-|LysR-family-transcriptional-regulator
MNQEAFALLPAFVAVVESGTFSGAARQLGLSKSVLSKKVSQLEQSLGCQLIYRTTRSLTLTEAGERYFETVRHAVRLASDGEDAIGALQSAPRGLLRVTVPMVYGRRHIAPLVPEFLSLHPEVQLQLEMSDAQQDLVAEGFDVAVRIGALEDSSLVARRLAPCLSTLCAAPAYLAQAGTPRTPADLERHNCLFYSLFRGGTQWRLHGPEGEVAITPRGNFEVNNSDAIHTALLAGLGIGNMPDFIVARDLAIGRLVHVLPDHALPEHGIWCVYPKRRHLPAKVEAWLAFLQERLGLR
>NZ_CP038443.1|WP_171273510.1|2813913_2814396_+|DMT-family-transporter
MIPPLVDRGRHALGQTLGQTLGALAAFAAGLLLALMIAQNGALARATDPWLGSWLAHGVGSLVAALLWWLAPRPPTPEAAPPWAWLGGLPGALTVVLAALCLNSPLGMAGTLALLLLGQLLFGALCDARGWLGLARRRPSGKDALAALLVMAGALLIVLC
>NZ_CP038443.1|WP_171273511.1|2814406_2814835_+|DMT-family-transporter
MTILILLGLLNGVAVSLSRTLNGRLASARGAMTASLANHLLGFGLLGVLLILKGAPWARLAGLDPWLLLGGVLGALFVAISSWAIGWVGALACALLIVTGQLAGGAMLDALAGRLAANDLLGILLVLAGAALQRWLAGKPRS
>NZ_CP038443.1|WP_005332143.1|2815115_2815358_-|DUF3297-family-protein
MSDNKPALPDRLAANPRSPHHVAECFQHEIGIRVNGKERTNVEEYCISEGWVKIPSPKAKDRYGNAMLITVKGTVEAFYA
>NZ_CP038443.1|WP_171273512.1|2815455_2816772_-|HipA-domain-containing-protein
MMSGSEHHRLELRLGNQLIGHLEYDSSRDTFQLGYTPEWQARGFPLSPPLALDGSASSAQIRAYLGNLLPENRGLDHLIEALSVSRSNLFALIHGIGRDVSGAVTFTLPAEPDVPTHFRPITPEELLLRLDQPEIWPLEVWDGRPRLSVAGVQAKLNLLRLEGTLGFGEGELCSTHLLKFEHHPHLVINEFVTMRLAALLGMPVARVELHRVGQGDTSHRGLLVERFDRRLDEDGARVRRRHMIDACQGLGFPVARKYERNFGDGRDVAHIREGVSLPRLFSLSALCVNPAQARLDMLQWLLFNLCVNNHDAHGKNYSFFVSKAGLMPTPWYDLVNVGLYPEFNQHLAMAIGDEFAPEAVNAWQLLEMAEACDLSKRLLQQTLHKLASDILHHLDTAISMVETDNPAELAYLARYRDDVERRCHHFQEQAALLPELQR
>NZ_CP038443.1|WP_171273513.1|2816755_2817052_-|helix-turn-helix-domain-containing-protein
MMADAPLQTGPKELDPASLGLAIRERRKAARMTQEVTASLCGISKKTLIKIEKGGDVYLSTLLQVMKALGLRLQLAQEAGSQVASGNSQPEVGDDEWF
>NZ_CP038443.1|WP_005323481.1|2821079_2822273_-|tryptophan-synthase-subunit-beta
MTLLNPFFGEFGGMYVPQILIPALLQLEKAFVDAKDDPAFVAEFGELLTEYAGRPTPLTLTRNLTKGTKTRLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVATALACALLGLKCRVYMGAKDCERQKPNVFRMKLMGATVIPVHSGSSTLKDACNEALRDWAANYDSAHYLLGTAAGPHPFPTIVREFQKMIGEEAKAQCFEKEERLPDAVIACVGGGSNAIGMFADFIDEPSVRLIGVEPGGHGIESGEHGAPLGHGSKGVFFGMHSYLMQDKQGQIQESYSVSAGLDFPSVGPQHAHLASIGRAEYVSVTDKEALDAFQELAKSEGIIPALESSHALAHALKMARSEPEKEQVLIVNLSGRGDKDIFTVADIFEKEGTLS
>NZ_CP038443.1|WP_171274346.1|2822327_2823752_-|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF
MLDPLSSPDAFLNRASINQTILGKIVAAKQEWVAARKLAQPLESFQGALVPSDRDFEGDLRAGSTRFILECKKASPSKGLIRDDFSPEAIADIYGNYATAISVLTDEQFFQGDFAFLPRVRGRVKQPVLCKDFMIDPYQVYLARHYQADAILLMLSVLTDEGYRALFKVAKELGLGVLTEVSNAEERDRAIALGAPVIGINNRDLRDLSVDLARTKQLAAEIPADRVVISESGINHRAQVADLRAHAKGFLVGSSLMSEPDLEAAVRKLVLGQNKVCGLTRPEDAAAAHQAGAVFGGLIFVAKSPRYVDIPAARAVMAGVPLSFVGVFRNAQPQTIAKTVEALNLAAVQLHGDEDAAYIETLRPLLPANCQIWKAVGITSGEPLPTLDYQVDRLLLDTKVGSQSGGTGQAFDWALLANLDKARLMLAGGLNPDNALQAAQVGCVGLDFNSGVESAPGQKDAHKLAAAFAALRTL
>NZ_CP038443.1|WP_171273514.1|2824833_2825433_-|aminodeoxychorismate/anthranilate-synthase-component-II
MTNIFLLDNFDSFTYNLVDQFRTLGYPVRIYRNSLPASRIMQEIEACDGDAVLVLSPGPGAPHEAGCLIDLIKLARGRVPILGICLGHQALCEAYGGTVGAAGEIVHGKRSLIEHNGHGAFAGLQSPLPVARYHSLVATYVPEELQVIAHYQGMPMAIEQRDERVLGFQFHPESIMTSEGARLLTQALAHITRPESHVR

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Crispr_ID: NZ_CP038443_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_7

2970961-2971083

Orphan

Consensus_repeat	Method
ATAGATCCCCTGTGCGACGCCATCGCCAAGGTGCTGTAA	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP038443_7

>merge|NZ_CP038443|7|2970961-2971083|CRISPRCasFinder
ATAGATCCCCTGTGCGACGCCATCGCCAAGGTGCTGTAACTGAGGCGAAGAGGTTCTATGCGGGAATCACCCGCGTCAATATCAATAGATCCCCTGTGCGATGCCATCGCCAAGGTGCTGTAA

>NZ_CP038443|7|7|2970961-2971083|CRISPRCasFinder
ATAGATCCCCTGTGCGACGCCATCGCCAAGGTGCTGTAA	CTGAGGCGAAGAGGTTCTATGCGGGAATCACCCGCGTCAATATCA
ATAGATCCCCTGTGCGATGCCATCGCCAAGGTGCTGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171273588.1\|2978232_2979228_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP038443.1\|WP_163150103.1\|2976463_2978233_+\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	unknown	unknown	gnl\|CDD\|183016
NZ_CP038443.1\|WP_171273580.1\|2960711_2961662_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_CP038443.1\|WP_041206032.1\|2958993_2960385_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|224699
NZ_CP038443.1\|WP_171273582.1\|2963211_2964108_-\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212519
NZ_CP038443.1\|WP_163153748.1\|2967457_2968519_+\|porin	unknown	unknown	gnl\|CDD\|225744
NZ_CP038443.1\|WP_171273578.1\|2956868_2957552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_025327475.1\|2983499_2984054_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP038443.1\|WP_171273587.1\|2972791_2973286_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP038443.1\|WP_171273586.1\|2971159_2972665_-\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP038443.1\|WP_171273589.1\|2979578_2980328_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP038443.1\|WP_171273583.1\|2964180_2964840_-\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP038443.1\|WP_171273585.1\|2968721_2969663_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_171273584.1\|2964984_2967072_-\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236966
NZ_CP038443.1\|WP_106886404.1\|2973279_2973798_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP038443.1\|WP_025327477.1\|2980538_2981183_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP038443.1\|WP_171273579.1\|2957602_2958970_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|224699
NZ_CP038443.1\|WP_171273581.1\|2961902_2963051_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|179614
NZ_CP038443.1\|WP_171274352.1\|2973826_2976082_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|236924
NZ_CP038443.1\|WP_005331987.1\|2979381_2979582_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171273588.1\|2978232_2979228_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	1.53106e-169
NZ_CP038443.1\|WP_163150103.1\|2976463_2978233_+\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NZ_CP038443.1\|WP_171273580.1\|2960711_2961662_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	1.53211e-151
NZ_CP038443.1\|WP_041206032.1\|2958993_2960385_-\|alkaline-phosphatase	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	1.9645e-132
NZ_CP038443.1\|WP_171273582.1\|2963211_2964108_-\|histone-deacetylase	gnl\|CDD\|212519	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11. Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients.	9.45457e-134
NZ_CP038443.1\|WP_163153748.1\|2967457_2968519_+\|porin	gnl\|CDD\|225744	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane].	8.03822e-35
NZ_CP038443.1\|WP_025327475.1\|2983499_2984054_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	1.40027e-83
NZ_CP038443.1\|WP_171273587.1\|2972791_2973286_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	5.71406e-29
NZ_CP038443.1\|WP_171273586.1\|2971159_2972665_-\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP038443.1\|WP_171273589.1\|2979578_2980328_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	6.7517e-157
NZ_CP038443.1\|WP_171273583.1\|2964180_2964840_-\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	6.72109e-49
NZ_CP038443.1\|WP_171273584.1\|2964984_2967072_-\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|236966	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.	0
NZ_CP038443.1\|WP_106886404.1\|2973279_2973798_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	1.9465e-47
NZ_CP038443.1\|WP_025327477.1\|2980538_2981183_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	1.10462e-164
NZ_CP038443.1\|WP_171273579.1\|2957602_2958970_-\|alkaline-phosphatase	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	2.78576e-118
NZ_CP038443.1\|WP_171273581.1\|2961902_2963051_+\|MFS-transporter	gnl\|CDD\|179614	PRK03633, PRK03633, putative MFS family transporter protein; Provisional.	0
NZ_CP038443.1\|WP_171274352.1\|2973826_2976082_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|236924	PRK11539, PRK11539, ComEC family competence protein; Provisional.	3.26629e-112
NZ_CP038443.1\|WP_005331987.1\|2979381_2979582_+\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	2.27803e-17

>NZ_CP038443.1|WP_171273585.1|2968721_2969663_+|hypothetical-protein
MIDFSHPEWRALAQQLLDEAPQVIRGRQWQPLIGMLRDNQLLLPLGNHRYELTPAGRRYLTRELMLAELACAPPEPEEWLHARGWQLGERVNERVLAALYRKGEASFSPVEQINFEDKGIRLCSDLPLRLRAARPFSLFFSGGTLLDAAPWLHTLGEVALPARTLAGLGKILWGEGEIQRVISTDSVGVFAELSLPDDALLVWLPAQDPGALQHLIAALPPQTLWSHLTALDPAGVDRVLVLAQRLGRPASWWLPRDLAPIKEAYAAPLQDARPWEPSRIPRPLRAWCSDLVESNRGLSAEVCALASGWHAIG
>NZ_CP038443.1|WP_163153748.1|2967457_2968519_+|porin
MKKTILAIAIPALFASAANAAVVYDKDGTSFDIYGRVQANYYADSDNASDITGSNAGDAELIGTSRLGWSGKVALNNTWSGIAKTEWQVASENSDNNDSDKDTFRARHIWVGFDGTQYGKIIFGQTDTAFYDVLEPTDIFNEWGDYGNFYDGRQEGQIIYSNTYGGFKGKVSYQTNDDQAVEVSDVGSDTNVTIFPNTKRKYGYAAAAGYDFDFGLGLNAGYAYSDLENTVTGDSGEKSEWALGAHYAINGFYFAGVYTEGDLKNDANGNKGEGRGYELAASYNVDAWTFLAGYNFKEAKNNVTNTGYADKVDETLLGVQYNFTSKLKAYTEYKIQGIDDMDDEFTVALQYNF
>NZ_CP038443.1|WP_171273584.1|2964984_2967072_-|ATP-dependent-DNA-helicase-DinG
MLSTRLKATIRNTYRQIADGLPGFVPRKEQNFLVAEIAKTLTGEYEKSRRILVAEAGTGIGKSLSYAQGAIPVARLTQKKLVISTATVALQEQLIHKDLPFYHRHSELPFRFMLVKGRQRYCCEHLLEQAASGSEMANFELDFFLQNTGSLSKHKPSDSDKERYQALWQAYTEGKWDGDRDNWPKPIPDTCWDRIAADRHSCNKALSHHQHCPFHRARNDMDAADVLVVNHALLLSDLTMGGGIILPPPDECIYVLDEAHHLPTIARDHGAASASIKGSRRWLEKLVQSAGKLARALNKESLLDPQLKLQDALASLQPDLKALEQWLAGNDQLFGSEQHHRFAEGVLPDPLPMLAENLKEASKKALRALDRMQGAIGEALKDGEIRRKEAEPLLAESGFHLQRLESFCALWEMLSRHVPTGKTPLARWMARSEDGDIWLHASPIEVGYLLEEWLWSRCLGAVLVSATLTALSSFSYFRHQVGLKEHDGTRYLRLRSPFEYHKAELYLPKMTHEPSAPGFTQELVDALPRLLAGKEASLVLFSSYRQMNEVAVGLRAKGLSLLVQGEASRNALLTLHKQKCDGGQASILFGTGSFSEGLDLPGHYLTNLVITKLPFAVPNSPVEEATAEWVEKRGGNPFLQLTVPEASRKLIQACGRLIRKEADRGRVTILDRRLLTKRYGKGLLDALPPFTRRIE
>NZ_CP038443.1|WP_171273583.1|2964180_2964840_-|DUF2057-domain-containing-protein
MKLTVLVPALAGLLWAGSALADSQLEIHNPYVAQLIDGETINPKLLDKTSSFPISAGKHQLVVAFEGNYSSRNEIKLVTAEPLVINFTSGDNQTLVLDFKKPRNEDEAKAFVKEQKVVLKDKVSGQALASEQFVMPKVGGFQLTRDYQQELLKMGKAFNQPATVAVSSAAVMAAASAPVEVAPSKAQSNPEALTQLQNWYNKADAETRKAFQIWVIQQQ
>NZ_CP038443.1|WP_171273582.1|2963211_2964108_-|histone-deacetylase
MSLRIFYHPHYSSLTLPERHRFPLAKYQALYQILAAQGYPLAEAPAASRQQITRVHDADYVAAALAGTLDDGAIRRLGFPWSPLLIERTLRSVGATIAASRHALEQGCGLQVSGGYHHAHRNFGSGFCLFNDLVIAARACLDKGRCERVLIVDLDVHQGDGSAALCAGSRDIITLSLHGEHNFPHHKPASHLDFALPSGMEDDAYLETLTQALSLALRLYRPDLILYQAGVDVHQADELGYLSLSDAGVRQRDAMVFDCAISHGLPIAAVPGGGYRRDWRQLIPLHLSLFEEAKKRYG
>NZ_CP038443.1|WP_171273581.1|2961902_2963051_+|MFS-transporter
MTTYSRPVLLLLCGLLLLTLAIAVLNTLVPLWLAHDQLPTWQVGMVGSAYFCGNLLGTLLAGALIKRAGFNRSYYLASLIFAAGCVGLGVTLGFWSWLTWRFIAGIGCAMIWVVVESALMCSGNARNRGRLLAAYMMVYYMGTVLGQLLVSTLPTGLMDVLPWVTGLVLAAILPLLFTRIVNEQGEQQGATRVWPMLRLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGVSDAGIGYWMAVMVSAGILGQWPVGRLADRFGRLPVLRLQVLVVILGALAMLGNLAMGPALFILGAAGFTLYPVAMAWACEKVEQHQLVAMNQALLLSYTIGSLLGPAYTSLLMQHLSDKLLFIMIASVSFIYLLMLLRPVGEHPTPVAHA
>NZ_CP038443.1|WP_171273580.1|2960711_2961662_+|ribosome-biogenesis-GTPase-YlqF
MSINWFPGHMHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPELRGDTPVIKVLNKADLADPAITELWVAHMEQEKGIKALPLTQQEPEKIKALLTLCHEMLPERNFDLRGVRAMIMGIPNVGKSTLINTLAGRIIARTGNEAGVTKSQQRIKLDNNVILTDTPGFLWPKLNPPSCGYRLAITAAIKDTVFDYADIAMFAADYFIKAYPERLKARYQIAELPETEIELLELIARQRAFMRKGGLADLHKASEILVNEFRSGMLGRISLETPEMVSAEIVLAAEEAEQKAKEKAEREEERQARARRKYARKRQK
>NZ_CP038443.1|WP_041206032.1|2958993_2960385_-|alkaline-phosphatase
MRNMAGLAVMIGATLVAGCNSNNDSSTPEPSAKNVIFFLGDGMGLNTLTAARIYGVGEEGSLTIDTLPETAFIKTFSHDAQVTDSAPSMAAYMTGVKSNNGVISMDSDATYESDCSQSAGKPVTTLLELAKADGRGTGVVTSTRVTHATPAATYAHICNRDLEADIAAQLVPGGAGYNGALKEGLDVVLGGGSSFFLPKADKGKREDGRNLIDEMQAKGYQFASTLDELNQAEAGKPLLGLFGSSHMKYDLDRPASEPSLAQMTLAAIKQLKDKEKGYFLMVEGGRIDHALHDTNAKRALQDTLAFDDAIKATLDEVKKTDPELKNTLIVVTADHDHTLVLNGYAKRTGKTTAGNPGVLGLVKNYETGEPSKDSDGMPYTIIGFGNGYNRVDGPRSSVAPLDDATVSADDYHQEVVVKVGEIGNETHGGTDVFLGAIGQGADSFHGSLDNTAVFGKVKAAAKL
>NZ_CP038443.1|WP_171273579.1|2957602_2958970_-|alkaline-phosphatase
MNKTLVCTALFAALGGLSQAQASDAKNVILFIGDGMGPSVLTATRLFKVGEEGNLEIMSLPRSARIKTFSHDAQTTDSAPSMAAYTTGVKMNNEVIAMSSDTRAVAPSKDANGNKGINNCTDDNGTPVPTILELAKAAGKSVGAVTTTELTHATPAATYAHICHRDAAYAIAEQAVPGGAGFNAALGDGVDVLMGGGANHWTPYSASNKGGRADGRDLTAELGAQGYQYVTTQSDLAKIESGKVLGLFSAKSHLDYELDRVAKGAANTQPSLSEMTAKAIDLLSQNSQGYFLMVEGGRIDHALHATNAKRSLTDAVALDEAVKTALGKVDLADTLIVVTADHDHTMTINGYAAKGNPVLDLVKNGDGSTQHDVDGKPFTTLVFGNGPNRADVRPTLTSDQVMADDYLQETGVKLGSETHGGGDVMLFADGAGSGRFKGTLDNTLVFGKLKEALGL
>NZ_CP038443.1|WP_171273578.1|2956868_2957552_-|hypothetical-protein
MMRLLLSIWLLGCTLSFPLLADEAPDLAARIRYQDRITGNDGIARESVWQEKWLRVGNQVWSQRLIPLPLARAYHATHDATPGHKHFTHQMAARWVTLDDGGDLQLRYADAWHNQLVEVPPEEYGQVAFKPDWERIRYLVNPALLQEMTPLDEQAPEQARWYEKREGKQRTRILWSSRWQLPLVVESASLDGYRSYRMEVTLKPLPRQLPWQQLDGYQTLDLRDFFD
>NZ_CP038443.1|WP_171273586.1|2971159_2972665_-|DUF853-family-protein
MAQPLTLAYANGQPISLLPAMANRHGLITGATGTGKTVTLQVLAEGFSRLGVPVFLADVKGDLSGLGAGGTPSAKLDARLAQLGIPTPAFAASPTLFWDLFAEQGHPVRATISDMGPLLLARLLGLNDTQSGVLELVFKVADDEGLLLLDLKDLRAMVQFAGDNAKSLTIRYGNVSTASIGAILRNLLTLESAGGDHFFGEPMLDIQDLLQTDGAGHGHINVLAAGKLTQSSRLYACFLLWLLSELFEQLPEVGDPDKPVLVFFFDEAHLLFNDAPKALLEKIELVVRLIRSKGVGVYFVTQSPADIPDSVLGQLGNRVQHALRAFTPSDQKAVRIAANTLRANPAFDAAGVITELGVGEALVSLLDEKGRPCVVERAFIAPPASRIGPLNDAERQALIQGSVLHGRYETREDRESAFERLNGGAPAASADVPQTPSEQGGGLLDALNGILFGRTGPRGGQHDGVVQTAAKSVARTLGNEVGRQLVRGVLGSLLGGSKRRR
>NZ_CP038443.1|WP_171273587.1|2972791_2973286_-|DUF2062-domain-containing-protein
MLSRWLARFKIDPDTLRQQKWFALFGERLLTPALWQGGTRALSGAVAAGLFASWIPIPMHSLVAVGLALAFRLNLPLALLAVWFNNPLTLPFMYLYAYRTGCLVLHQTPEPFHLTWSLHWLEHEAATLVPPFLLGSLLLAVLTATTGALLTLLMLQLGRLSHSH
>NZ_CP038443.1|WP_106886404.1|2973279_2973798_-|DUF2062-domain-containing-protein
MPKRLIKRWLPDQDKLKEHKHLRLFGKLLLDANLWHLNRRSAAGAFAVGLFMAWIPLPCQMLLAAGGAILFRVNLPLSVALVWLSNPFTMPPLFYGAYLVGCQLLGHPAQHIDIQFTWEWLVSVFETLAPPLLLGSLVLALLSALMGYAFIRTFWRINTVRQWQKRKEARAC
>NZ_CP038443.1|WP_171274352.1|2973826_2976082_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MDLRLLSFALGASSSLLWPWLPSTAWGGALLALAILLAHGRHWRLLFLVLGGLWMQLNLQYRLTWLDKLETHTSHIITARVQSTESSGDKPRDKFARLLLRVETLDEQYLAISPLVRINAYQGLPPLPAGSRITLVSSLKPAHGLANEAGMDGRRLLLGKGITATGNLRRIIEVQEAAPGMRERWLAAASSAWQGLEQAPLLAALSFGEQGGITDAQWDLFRGSGLTHIIAISGQHIALVAVLGWWLGRLLGLRGAIVISLLFAAVYSWLAGFAVATERALIMVLVWSLLRWLNRDWPSHRIWLWAFVVLVLWDPLALYSAGFWLSFMAVALLLLASLLHARPGLVRLQCLLLLGLLPLQLLLFEGMAPLALLLNLLALPLFCLGIIPLALIGVLLAPLSTALAHALFWLSDLGLTWVLWGLGLLADHLQLWWPVPGWLMPVSALLVLLWGAWQLPGGRGLLLPVGAALLLGVWPAPTPWQVRVLDVGQGLSVLVTRGERGILYDTGNSYPGGYNMAEAAILPVLSRLDVRVLDALIISHKDRDHAGNRRAMLQAMPVRRELSSFGFARSTALCRRGQRWHWQGLEVHVLWPERPGAGRNNDSCVVQISDGRHRILLSGDIEQGAERRLLALEEQGEGEELVSTFSSIHLSTLSSTVLVSPHHGSRTSSTPGFVAAVNPDVVIHSAGDRNQWQFPRPEVVARYQGARQWVTGQDGAILIEAGEGGLKIRAEREQGPWYRRNGHWWQPRLWR
>NZ_CP038443.1|WP_163150103.1|2976463_2978233_+|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA
MQQETSQESWPVFKRLLGYVRDRKLGLVGGIIGMLGYAAVDTTFVYSIKPLIDQGLNGNDSSVLKWMPFFVLGIVALRGCAAFLSNYCMAWVGNHVVMRLQQQVFSHLMAMPMSFFDRQNTGNLLSKVTYDAGQVSSAASSTLVSLVREGATVIGLLGLMFWHSWQLSVIFLVVGPVVGVLIGLISRRFRKISRHIQQAVGDITTSTEQMLKGHKEVLMFGGQQVEDKRFFTVSNRMRQQTMKMVAADAIGSPIVQMVASVALAVFLYVATIDSVKATLTAGTFTVMVTSMMMLLKPLKSLTDVNNQFQRGITACQSLFGLLDSTPEQDTGTRTLERARGEIEFRNVTFTYPTKETPALHNISFKVEAGKSVALVGRSGSGKSTIASLLTRFYDIEQGEILLDGVNIREYKLSELRKQYALVSQHVHLFNDSVANNIAYAAEERYSREEIQHAARIAHADEFVRKMPEGYDTVIGENGASLSGGQRQRIAIARALLRDSPVLLLDEATSALDTESERHIQAAIDELCKARTSLVIAHRLSTIEKADEILVIDEGHIVERGNHDALMAQQGTYAQLRAIQFGNVTVSNKG
>NZ_CP038443.1|WP_171273588.1|2978232_2979228_+|tetraacyldisaccharide-4'-kinase
MLERLWYGKSGWRWALAPLAMLFALVSGGRRFAYRRGWLSRYRASLPVIVVGNISVGGNGKTPVVVWLVEQLQARGWRPGVVSRGYGGKAPHYPYRLDATSTTAQAGDEPVLIARRCGCPVVVAPKRADAVRLLEQSGEVDIIITDDGLQHYALARDIELVVVDGARRFGNGCLLPMGPLREPMTRLKRVDAIICNGGTPAQGEYPMALVAAAPRRVCDDAPLDAPLAGPVDALAGIGHPPRFFATLTGLGYELVESVGYADHQAFDRDELLARFGERPLLMTEKDAVKCRAFAPAHWWYLPVSAELPASLLDTLLQRLTPPQASDPDHAH
>NZ_CP038443.1|WP_005331987.1|2979381_2979582_+|Trm112-family-protein
MALDIKLLDIIACPVCKGKLHYQPQSDKAAHELICRFDRLAYPLEEGIPVLLENRARHLPLEELKP
>NZ_CP038443.1|WP_171273589.1|2979578_2980328_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALQSGADRVIVATDDERVQQALQTTGVEVCMTSKDHQSGTERLAEVCRHYGFAADTIVVNVQGDEPLIPPAIIRQVADNLAAATAPMATLSVPIQDAEEAFNPNAVKVVTDKDGYALYFSRASIPWDRDRFAQSQERIGAHYQRHIGIYAYRAGFIQRYVDWAPSALEQVEALEQLRVLWYGEKIHVAQALEAPPVGVDTQQDLDKVRALLAH
>NZ_CP038443.1|WP_025327477.1|2980538_2981183_+|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVFLVDDHELVRTGIRRILEDVRGIKVVGEAQSGETAVAFCRQHHPDVILMDMNMPGIGGLEATRKILRLRPDVRIIVLTIHSENPFPTKVMQAGAAGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADENPFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLGINGDVELTHLAIRYGMLDADTL
>NZ_CP038443.1|WP_025327475.1|2983499_2984054_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTNIPNLLTFFRILLIPVFVILFYLPYQWSYMAAALVFILAAATDWFDGYLARKLNQSTAFGAFLDPVADKIMVAAALVVIVEHYNTIWVTIPAMTMIGREIIISALREWMAELGKRSSVAVSWIGKWKTMIQMVSLTGLIWQYDIWMVWLAYVLLYVATVLTFWSMFQYMKAAWGDLTYHSRF

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Crispr_ID: NZ_CP038443_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_8

3279464-3279539

Orphan

Consensus_repeat	Method
GCTAGCGCATATGCATGATCTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_8

>merge|NZ_CP038443|8|3279464-3279539|CRISPRCasFinder
GCTAGCGCATATGCATGATCTTGTTATTGATGCTGGCGATGGGGTCACACTGCTAGAGCATATGCATGATCTTGTT

>NZ_CP038443|8|8|3279464-3279539|CRISPRCasFinder
GCTAGCGCATATGCATGATCTTGTT	ATTGATGCTGGCGATGGGGTCACACT
GCTAGAGCATATGCATGATCTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_081805676.1\|3275194_3275473_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NZ_CP038443.1\|WP_042650272.1\|3287079_3287844_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_042650271.1\|3287837_3288392_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|368781
NZ_CP038443.1\|WP_171273719.1\|3277893_3278910_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|178323
NZ_CP038443.1\|WP_171273725.1\|3291576_3292269_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP038443.1\|WP_005327814.1\|3290720_3291314_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NZ_CP038443.1\|WP_005327789.1\|3280578_3281523_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP038443.1\|WP_041206904.1\|3281600_3282302_-\|DUF2982-domain-containing-protein	unknown	unknown	gnl\|CDD\|378593
NZ_CP038443.1\|WP_171273723.1\|3288404_3289625_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP038443.1\|WP_043133493.1\|3276619_3277027_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP038443.1\|WP_171273721.1\|3284564_3286127_+\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|225525
NZ_CP038443.1\|WP_171273716.1\|3272884_3273490_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP038443.1\|WP_171273722.1\|3286194_3286920_+\|oxygen-insensitive-NADPH-nitroreductase	unknown	unknown	gnl\|CDD\|182710
NZ_CP038443.1\|WP_171273717.1\|3273532_3274276_-\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|236511
NZ_CP038443.1\|WP_043133492.1\|3277099_3277807_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181609
NZ_CP038443.1\|WP_171273724.1\|3289718_3290630_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP038443.1\|WP_171273718.1\|3275549_3276449_-\|aldo/keto-reductase-family-oxidoreductase	unknown	unknown	gnl\|CDD\|227322
NZ_CP038443.1\|WP_042650280.1\|3274440_3274983_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_171273715.1\|3272153_3272888_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP038443.1\|WP_042650276.1\|3278977_3279409_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|312075

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_081805676.1\|3275194_3275473_+\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	2.66511e-36
NZ_CP038443.1\|WP_042650271.1\|3287837_3288392_+\|VOC-family-protein	gnl\|CDD\|368781	pfam06185, YecM, YecM protein. This family consists of several bacterial YecM proteins of unknown function.	2.71827e-25
NZ_CP038443.1\|WP_171273719.1\|3277893_3278910_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|178323	PLN02721, PLN02721, threonine aldolase.	3.45262e-148
NZ_CP038443.1\|WP_171273725.1\|3291576_3292269_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	1.17641e-129
NZ_CP038443.1\|WP_005327814.1\|3290720_3291314_-\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	2.67815e-136
NZ_CP038443.1\|WP_005327789.1\|3280578_3281523_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.99133e-44
NZ_CP038443.1\|WP_041206904.1\|3281600_3282302_-\|DUF2982-domain-containing-protein	gnl\|CDD\|378593	pfam11201, DUF2982, Protein of unknown function (DUF2982). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	8.53417e-72
NZ_CP038443.1\|WP_171273723.1\|3288404_3289625_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.82197e-59
NZ_CP038443.1\|WP_171273718.1\|3275549_3276449_-\|aldo/keto-reductase-family-oxidoreductase	gnl\|CDD\|227322	COG4989, COG4989, Predicted oxidoreductase [General function prediction only].	3.47988e-172
NZ_CP038443.1\|WP_171273721.1\|3284564_3286127_+\|AbgT-family-transporter	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	0
NZ_CP038443.1\|WP_171273716.1\|3272884_3273490_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	5.05285e-80
NZ_CP038443.1\|WP_171273722.1\|3286194_3286920_+\|oxygen-insensitive-NADPH-nitroreductase	gnl\|CDD\|182710	PRK10765, PRK10765, oxygen-insensitive NADPH nitroreductase.	1.07778e-158
NZ_CP038443.1\|WP_171273717.1\|3273532_3274276_-\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|236511	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed.	7.8442e-126
NZ_CP038443.1\|WP_043133492.1\|3277099_3277807_+\|short-chain-dehydrogenase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	4.61732e-30
NZ_CP038443.1\|WP_171273724.1\|3289718_3290630_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.15577e-50
NZ_CP038443.1\|WP_171273715.1\|3272153_3272888_-\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.77097e-60
NZ_CP038443.1\|WP_042650276.1\|3278977_3279409_-\|PAS-domain-containing-protein	gnl\|CDD\|312075	pfam08448, PAS_4, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	0.000143922

>NZ_CP038443.1|WP_042650276.1|3278977_3279409_-|PAS-domain-containing-protein
MEIREFHWLMNIVQNLDVGLVVLDKGYRVQVWNGFMESHSGRLAGEVRDQVLFDLFPDVDRAWLERKANMVFKLNNRAFSTWEQRPYLLRFSNYRPITGSAPHMYQNLTLVPLADFGGEVTHLAIMIYDATDEAMLITGQRQG
>NZ_CP038443.1|WP_171273719.1|3277893_3278910_+|low-specificity-L-threonine-aldolase
MRYIDLRSDTVTQPTEAMRQSMLHAEVGDDVYGEDPSINALEHKGAELLGKEAALFVPSGTMSNLLAMMSHCQRGEGAVLGSASHIYRYEAQGSSVLGSVALQSVPMQADGTLALKDVRAAIAPDDAHFVQTRLVCLENTHNGKVLPLPYLREMRDFVDEHGLLLHLDGARLFNAVVASGEPVAAIAAPFDSISVCLSKGLGAPVGSLLVGSHGFIARARRLRKMLGGGMRQAGILAQAALFALDQHVTRLADDHRRARRLAEGLASLPGVALNMEEVQTNMVFLRLTQGDPATLLGFMKERGILFSGYGELRLVTHLQITDDDIDEVIDAFTEFLNG
>NZ_CP038443.1|WP_043133492.1|3277099_3277807_+|short-chain-dehydrogenase
MSYLILGSGGLGGALAHELASRGEEWLLAGRQLPKGLDPACYFPLQEVDPLSFDALFTLYDTATLPNVVINTIGLLHDLSHMPERRVEEVTPQWLGESLQANAWPHLALGASLSRLMTFESRLWLCTLSDLAGSLGEAHREPVRRYSYRMSKAALNMGSRILAAEWAERFPGAGVITVHPGLMDTPMQQPFRQEIDPALLQDPALVAPLLLDLLASLNQAHSGRFVDLRGQPLPW
>NZ_CP038443.1|WP_043133493.1|3276619_3277027_+|transcriptional-regulator
MEGFAARLQSLIGEGSVSAFARKVGLSEALIRKYLKGAEPGLGKANQIAMGANCSLEWLATGCGYLYRQAEVVDRDALAAAGALVQETLPGQPMPDEQQLVTLLAYYQFLRSHKQADGFLDLARAREFGRHLAEA
>NZ_CP038443.1|WP_171273718.1|3275549_3276449_-|aldo/keto-reductase-family-oxidoreductase
MSVSRLALHHQGPTFSRLIMGYWRLMEWQLSPAALLDLMKYHLDLGITTIDHADIYGGYQCEEAFGHALRLEPSLRSRMEIVSKCGIALTAKPEHALNHYNTSKGHIVASAEASLQKLGTDHLDLLLIHRPDPLMNADEVAEAFISLKQAGKIKHAGVSNFTPHQFALLQSRLPFPLVTNQLEISPLHQEGTLDGALDQCQQLGIKPMAWSCLGGGRLFNDPAYAPLRAELELIRQELGAQTIEQVVYAWVMMLPSQPLPLIGSGKRERIAAAVAAESIVLSRQQWFRIRKAALGYDVP
>NZ_CP038443.1|WP_081805676.1|3275194_3275473_+|RNA-binding-protein
MKIYVGNLSYRMTADELTNVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAELHGTEIGGRTITVNQAKPKTDAPRGRPQRHR
>NZ_CP038443.1|WP_042650280.1|3274440_3274983_+|hypothetical-protein
MRVSELALQGGVNWLMPPARRFYGVMICLLLASLGTVVAALLLGYPEMGLLPWVGLVFGGIVLVMMVLPRNWQRWRLAELAWDDHHLYLLNGGEDRALALPKAALVGIERDRKVGHDGQWLDFSLDLGLDEETLADAAGLLGLTREGTHEVAPGVYRFGFKRAWHSRQALNKLLAALQPA
>NZ_CP038443.1|WP_171273717.1|3273532_3274276_-|penicillin-insensitive-murein-endopeptidase
MLATALLLTTSALYAEAIGGYAAGCLKNAVALPLTGPGYQVIRSKRLRYYGHPDLIHYLQGLANQTRLAGMPDLYIADLAMARGGPFTSGHRSHQTGLDADIWFRMADRPISQWEQDAPKEWALIDEPSYRMLPGRFGPQQLNLLRLAANKPEVARIFVNPVIKAEVCKRAADEPWVAKLRPWVGHFSHFHVRLRCPVNSPDCQPQAPIPPGNGCDAELASWLKDKPQLPKVSMSYRAPALPRRCEG
>NZ_CP038443.1|WP_171273716.1|3272884_3273490_-|LemA-family-protein
MENNKMAISLRHRATQCLLTFTLLLGLTGCGMNNIPTLDEQVKASWGQVENQYQRRADLIPNLVATVKGYASHEQETLKAVTDARARVGSLQVSDPAQLKAFEAAQDQLSSALSRLMVVVERYPDLKADQQFLTLQAQLEGTENRISVARRDYIEAVRQFNTEIRTFPGVIWSKLLYSDLEAKPTFSAKPGADEAPKVSFQ
>NZ_CP038443.1|WP_171273715.1|3272153_3272888_-|TPM-domain-containing-protein
MTMMLRALLPLLLLWTTTLQAAPAFPPLSGRVVDEAALMSRKQAHQLTQQLAAFEKRSGIQLVVVSIDSLDGETIEEYGYQLGRHWGIGQKGKNNGVLLLIAQDERKVRIEVGYGLEGALPDAIAANIIQTRILPAFKRGDMVAGVVAGSQGIMQALAGEYQPVDNASKEEKQGGPWLFILVVIVMIVLHNLRGGGGGGGRGRRNAAYLVGGFGAGRSGGGFGGGGGFSGGGGSFGGGGASGGW
>NZ_CP038443.1|WP_005327789.1|3280578_3281523_-|LysR-family-transcriptional-regulator
MKYIEEFYLFVKVVQEGGFSHAAAALGMPTGTISRRISQLEEQLGCALLHRSTRKLRLTDEGLRYYERLCTPLAEIEQATGEIQGQETDISGLIRLAAPIALSNTILVDMLADFGLRYPGVQFDISQTNDQAPLCDQDRDLVFFNGELSQTLPNALCLGHIEYGLFASPLYLEKMGIPSHPAQLEEHDLIYCWPHQHWQLSGRDQQTVQIKRTPRLSVNQTQAAVRAARRHLGIVNAPLHYVHPFLQDEQLVAVLPDWQSGKRPFYMLHCQPRFTPLRVKMFADFVEKYSVRYRHHQRDDQFLPAMPLPVASDG
>NZ_CP038443.1|WP_041206904.1|3281600_3282302_-|DUF2982-domain-containing-protein
MKTLHVIPMVRRNGLTLILLGMVITITMIFILFFLREQLLMPVIFLLLAGLMTILVGALKLSEPHFSLSLCQDCLQYHHKYGGWILKWRNIQRIDQPRIHLGWDLVPLPYIGLKIKDYDDFLTLITPRLAVRLLTEQRAVLLQAMSSERPDCLTGGCGAGLLGEGLLEESRFRSSSGQQYEGVIAMLGNRMTRLRDLLGYDLLVPDNSLDRSPVDFVRLLNQYQRESNLIQIN
>NZ_CP038443.1|WP_171273721.1|3284564_3286127_+|AbgT-family-transporter
MSQAAVNERPAPPNGWLNRFLNGVEKAGNKLPDPAMLFLYALLIVWVGSWIGSQFSFDLANPRTGEAVVVNNLLTGAGLAEFLASMVTTFTGFAPLGIVLVAMLGVGVAEQSGFINTGLKKLLKVTPARFLTPMLILVAIVSHTAADAGYVLVIPIGGIIFHAAGRHPLAGIAAAFAGVSGGFAANFLPSGGDALLQGFTQSAAQLLDPDYMVNTLCNIIFTGASSLLIICVGWFVTEKIVEPRLKQVPLNEDLESADEMGRYSAQESRAFNWAGFAMLAAVVLLGLALSPDDSPMRAPDGSLTTFAAPVMKSIVPLIFLLFILPGIVYGFVAGSFKSGKDVIDAMSATMNKMGSYMVMAFFCALFIKAFGDSNLGTLLALSGAEVLHALALPGEVTIVGMILLTASVNLVVGSASAKWALISPILVPMLMAVGISPELTQAAYRVGDSASNIITPLMVFFPLVVVYCQQYVKSTGIGTLVSMMLPYSLAFLVSWTCFLLLYWALGFPLGLQAPYVYPAP
>NZ_CP038443.1|WP_171273722.1|3286194_3286920_+|oxygen-insensitive-NADPH-nitroreductase
MNPTIDLILSHRSIRQFTPEPISASQLDQILNAAQSASSSSFLQANSIIRVTDKGLRATLAELAGHQAYVAEAAEFLLFCADYQRHSQIVPEAQTGFVEQLMIGAIDGALMAQNALLAAQSLGLGGVYIGGIRNNPAAVSELLGLPHQVIPLFGLCLGHPAQQPEQKPRLPRALVVHENRYPETLDRALLAQYDSQIHDYYLARSSNNKVQTWSGQIKAILGKEARPFMLGFLQSKGFCLK
>NZ_CP038443.1|WP_042650272.1|3287079_3287844_+|hypothetical-protein
MILTLILLSIGALLFLVIAYNVVQQYKQKAEADKRQAIARHKAVADETEEVLLNVNLVPFSKNMVLLLQHRILDAYRAIVQVMPNPQVKQRIIDVQTQIKNVQENYSSQDEGHFKTPESDRQAIQMLQLAKKMRAVLRVEHNKGKIDPQGFAQEDRRLELMQLKINIANLIKRAMDAQIQGQYGTCRQLYTKGLGALANVSDKDPYLLAREEDMRQGMRQLEEHLQQHSEKELQNIKDKEADELDVLFQPKKKW
>NZ_CP038443.1|WP_042650271.1|3287837_3288392_+|VOC-family-protein
MVIMSHPLDTTLGPMAPFVCQLLTEMHALMGECEAPQVDHLCYRAATLPEYLALKETLARHGVLLVEGMIGGRPIATYRLHQPVCWQQITVPCIELAAPKAGRAHQAGLEHIELVVPSLPALVAAHPGLAFKTANMGDGRNPDVGLMLPSGQIKFHLRPLSEVIDEELHTGAVVPVPADYYDGL
>NZ_CP038443.1|WP_171273723.1|3288404_3289625_-|MFS-transporter
MIEVGSREWIRATLALSLGSFLVFLNLYQTHPLLPLLAEVFSVSSLSAGWTLAGCTAGLAGSLLICARMADRFGRRRIMLWTLTCAIMLSLCIPWVTRFDLLVCLRVLQGALLAGLPATAIAYMGEEFSKRALLSAVGVYIAANSLGGIAGRVVGGLLAGWFGDWQHTFLGIGLISLALLPLVIWLLPAQTRFVAAEAAPGQLRRAIQSHLGNPLLLGAYLIGGLNFMVFLNQYSYLTFLLAKAPFSLPTQWLGMLFLTYLTGTLASSLSGRCAHRFGAQRLLLVGIALMALGSLALLQGTLAAIIGGLLVSSFGFFLAHACASAWVGQHVEHNRALASSLYLVGYYLGASLGGLYLHPFWERGGLWGLVLGIELVLCVTAALSLWLGHLKGRAAPPLSCHASSRQ
>NZ_CP038443.1|WP_171273724.1|3289718_3290630_+|LysR-family-transcriptional-regulator
MDLKQLGYLLAVRDAGSFTKAAQGLHVAQPAVSMAIAKLEQQLDLRLFDRQDRSVRLTPEGEVLCRHAERLLLQMHQAQAEMAELKGLERGEVRIGIPYMMGSYYFPPILMAFKHRYPGLKIRVEEAGTRELLSRMVDGSLDLAILITSDLPPALEGAQLLREEMLMVVGEEHPLRGASAVSLPQFFNQELAMFRRGFYHREHMEALAQGLGIEPNIGFESNLIPLLKAVVRQGFAVTTFLRMALEEETTLSGIPFAPPIFLDLCVAWRRGDPLSMANRALRDFLLAQAKPEPTLDSALRDNN
>NZ_CP038443.1|WP_005327814.1|3290720_3291314_-|GTP-cyclohydrolase-II
MSSITLVAKSKLPTPWGIFTLVGFQETGTGKDHAALVMGDIADGEPVLGRIHSECLTGDALFSLRCDCGFQLQAAMEKIAKAGRGVLLYVRQEGRGIGLLNKIRAYHLQDQGADTVEANVALGFAADMRDYTICADMLKALEVKSLRLMTNNPRKLKAMESFGIPVAERVPLQEGRNPHNEFYLSTKANKLDHLFKK
>NZ_CP038443.1|WP_171273725.1|3291576_3292269_+|(d)CMP-kinase
MPQMAPVMTIDGPSGAGKGTLCQLLAEKLGWHLLDSGAIYRVLALAALHHDVELDAEAALVPLAANLDVQFQVDGGQVKVVLEGEDVSRTIRSQEVSDAASKVAVFPRVREALLRRQRAFRQLPGLIADGRDMGTVVFPEAEVKIFLDASAEERAQRRYKQLQDKGFDVNFERLLTEIRDRDDRDRNRAVAPLKPAEDALVVDSTSMTIDDVLATVLAYAKQQLGDVSTS

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Crispr_ID: NZ_CP038443_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_9

3862865-3863005

Orphan

Consensus_repeat	Method
CACATCTGGCTGTTCACTCCCTTCCCCGGGGATTGCCAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_9

>merge|NZ_CP038443|9|3862865-3863005|CRISPRCasFinder
CACATCTGGCTGTTCACTCCCTTCCCCGGGGATTGCCAGCAACCCTGAGGGCCATGACGACAGCGCTACATTGGCGATCATTGCCAATCCGCAAGGGGCGCACATCTGGCTGTTCACTCCATTCCCCGGGGATTGCCAGCA

>NZ_CP038443|9|9|3862865-3863005|CRISPRCasFinder
CACATCTGGCTGTTCACTCCCTTCCCCGGGGATTGCCAGCA	ACCCTGAGGGCCATGACGACAGCGCTACATTGGCGATCATTGCCAATCCGCAAGGGGCG
CACATCTGGCTGTTCACTCCATTCCCCGGGGATTGCCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171273873.1\|3870063_3870576_+\|DUF4823-domain-containing-protein	unknown	unknown	gnl\|CDD\|374367
NZ_CP038443.1\|WP_171273864.1\|3857500_3858388_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP038443.1\|WP_042648116.1\|3858545_3859463_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP038443.1\|WP_171273861.1\|3851544_3853041_-\|leucyl-aminopeptidase-family-protein	unknown	unknown	gnl\|CDD\|238247
NZ_CP038443.1\|WP_171273865.1\|3859515_3860448_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP038443.1\|WP_171273868.1\|3865092_3865569_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP038443.1\|WP_139751622.1\|3863086_3864073_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP038443.1\|WP_171273866.1\|3861526_3862303_-\|DTW-domain-containing-protein	unknown	unknown	gnl\|CDD\|225690
NZ_CP038443.1\|WP_042648124.1\|3865842_3867243_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP038443.1\|WP_171273869.1\|3867312_3867750_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|182510
NZ_CP038443.1\|WP_171273859.1\|3849506_3850763_+\|M20-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349915
NZ_CP038443.1\|WP_171273872.1\|3868761_3869607_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_171273863.1\|3855604_3857239_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|371507
NZ_CP038443.1\|WP_171273860.1\|3850834_3851515_-\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|181865
NZ_CP038443.1\|WP_171273874.1\|3870601_3870994_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240046
NZ_CP038443.1\|WP_171273870.1\|3867799_3868261_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP038443.1\|WP_171273862.1\|3854782_3855502_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038443.1\|WP_005326082.1\|3847328_3848300_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP038443.1\|WP_171273871.1\|3868299_3868632_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NZ_CP038443.1\|WP_171273875.1\|3871095_3871602_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171273873.1\|3870063_3870576_+\|DUF4823-domain-containing-protein	gnl\|CDD\|374367	pfam16105, DUF4823, Domain of unknown function (DUF4823). This family consists of hypothetical lipoproteins around 210 residues of length and is mainly found in various Pseudomonas species. The function of this family is unknown.	9.78404e-47
NZ_CP038443.1\|WP_171273864.1\|3857500_3858388_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.75168e-30
NZ_CP038443.1\|WP_042648116.1\|3858545_3859463_+\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	2.40374e-13
NZ_CP038443.1\|WP_171273861.1\|3851544_3853041_-\|leucyl-aminopeptidase-family-protein	gnl\|CDD\|238247	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.	2.63321e-138
NZ_CP038443.1\|WP_171273865.1\|3859515_3860448_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.8384e-30
NZ_CP038443.1\|WP_171273868.1\|3865092_3865569_+\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	6.21465e-91
NZ_CP038443.1\|WP_139751622.1\|3863086_3864073_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	2.23202e-140
NZ_CP038443.1\|WP_171273866.1\|3861526_3862303_-\|DTW-domain-containing-protein	gnl\|CDD\|225690	COG3148, COG3148, Uncharacterized conserved protein [Function unknown].	7.46499e-81
NZ_CP038443.1\|WP_042648124.1\|3865842_3867243_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
NZ_CP038443.1\|WP_171273869.1\|3867312_3867750_-\|acetyltransferase	gnl\|CDD\|182510	PRK10514, PRK10514, putative acetyltransferase; Provisional.	7.43758e-44
NZ_CP038443.1\|WP_171273863.1\|3855604_3857239_-\|ATP-dependent-endonuclease	gnl\|CDD\|371507	pfam11398, DUF2813, Protein of unknown function (DUF2813). This entry contains YjbD from Escherichia coli, which is annotated as a nucleotide triphosphate hydrolase.	5.22981e-170
NZ_CP038443.1\|WP_171273860.1\|3850834_3851515_-\|pyrimidine-5'-nucleotidase	gnl\|CDD\|181865	PRK09449, PRK09449, dUMP phosphatase; Provisional.	1.33525e-78
NZ_CP038443.1\|WP_171273874.1\|3870601_3870994_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.84398e-38
NZ_CP038443.1\|WP_171273870.1\|3867799_3868261_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.00028e-14
NZ_CP038443.1\|WP_171273859.1\|3849506_3850763_+\|M20-family-metallo-hydrolase	gnl\|CDD\|349915	cd05665, M20_Acy1_IAAspH, M20 Peptidases aminoacyclase-1 indole-3-acetic-L-aspartic acid hydrolase. Peptidase M20 family, bacterial and archaeal aminoacyclase-1 indole-3-acetic-L-aspartic acid hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes indole-3-acetyl-N-aspartic acid (IAA or auxin) to indole-3-acetic acid. Genes encoding IAA-amidohydrolases were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and ILL2 encode active IAA- amino acid hydrolases, and three additional amidohydrolase-like genes (ILL3, ILL5, ILL6) have been isolated. In higher plants, the growth regulator indole-3-acetic acid (IAA or auxin) is found both free and conjugated via amide bonding to a variety of amino acids and peptides, and via an ester linkage to carbohydrates. IAA-Asp conjugates are involved in homeostatic control, protection, storing and subsequent use of free IAA. IAA-Asp is also found in some plants as a unique intermediate for entering into IAA non-decarboxylative oxidative pathway. IAA amidohydrolase cleaves the amide bond between the auxin and the conjugated amino acid. Enterobacter agglomerans IAAspH has very strong enzyme activity and substrate specificity towards IAA-Asp, although its substrate affinity is weaker compared to Arabidopsis enzymes of the ILR1 gene family. Enhanced IAA-hydrolase activity has been observed during clubroot disease in Chinese cabbage.	0
NZ_CP038443.1\|WP_005326082.1\|3847328_3848300_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP038443.1\|WP_171273871.1\|3868299_3868632_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	5.76059e-46
NZ_CP038443.1\|WP_171273875.1\|3871095_3871602_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.52936e-12

>NZ_CP038443.1|WP_171273866.1|3861526_3862303_-|DTW-domain-containing-protein
MKPIPDHAVNRLRIWRKSISTRPFLARGGSVPRCEACQLRHAWCACEWRPELKAEAGFCLLMYDSEPMKPSNTGRLIADVLPQTTWAFLWQRTKPHPELLALLADPVWQPYVVFPACEKSPARVTEQVALAPGKKPLFILLDGTWPEARKMFNMSPYLDGFPVLSVRPDALSTYGMRVAHCDEHLCTAEVAACVLEVAGELQAGQALQHWFNLFSSRYMAGRVSRAPGEDEASLLQALETIKGEVAESDAERGEAVLA
>NZ_CP038443.1|WP_171273865.1|3859515_3860448_+|LysR-family-transcriptional-regulator
MLLEGLETLCLLASEGTMAKVASRLYISQSAVSKRITQLEQRLGKRLIEPDGRQIRLTPQARELLARVAPSLAEMKGVLADSQTLTDKTSLPVACSETLLAGYLARFMHDYLGRDPHLALSTHHTPVILTRVRGGDALLGICAGRLPPGHGLCAELLLEEPFYLVGDDGDEVVQPDHQIALQATLTGKLSEAEVNEELLAQEKVRKILTMDLENPSNRYLRDPLAALGLVPAMELDSYLALIELAKAGIGPVLLPAGLLALVGDQGKRARALPGLARPLHLVYRPSSLKRARIQRLVEEIRAHFARVSQG
>NZ_CP038443.1|WP_042648116.1|3858545_3859463_+|EamA-family-transporter
MNLLLYVSTVLIWGSTWIAIAWQLGPIPIEVSVLYRFALAALALFALLTVSGRFPRLPWAGQRYAALLGALLFSTNFLCFYHATLYIPSGLSAVIFASASIFNGLNLWLFEGKRPGLRWLQGSLLGLFGTLLLFWPVLADAQLGANGWKGLLFACGGTLCFSLGNLVSARGQRQGYQVLQMVPWGMVYGVALLLGWVMVLGQSLTLPTEPRYLAAMVYLAIFGSVIAFTAYLTLVGRIGASKAAYATVLFPLVALSLSTLYEGFVWQTVSIMGVVVSLIGNLVIFAPPVKTWRWPLSRAANGTCP
>NZ_CP038443.1|WP_171273864.1|3857500_3858388_-|helix-turn-helix-transcriptional-regulator
MQQRRQAGVFDALVSTGARLEDSCWLEPGLGVASWRNRYDQTRYHKPGHHTISVYLQGGEQTERLDGPGGHGGTGKVCIMPDHHRSEWLVREEFRFFHLYFTPAHFTRIAEQVCDKEGRHLVLQDKTFIEDPQAAALVQAQLMKLDWQHGVDRMALSHGAWMLMLHAYRHYTREAPSLPEVRGGLAPVVVRRVQEYLRSHLADSVTLSDLAREAGLSEYHFARMFGQSLGCPPHRYLLGLRLQRAKQLLAGSDPLASIAAQCGFSSQAHFGNRFREAFGLSPGQWRAQLSFSCHR
>NZ_CP038443.1|WP_171273863.1|3855604_3857239_-|ATP-dependent-endonuclease
MFLERIEVKGFRGINRLSLGLDHTTVLIGENAWGKSSLLRALWCLLGNAEPYQFSRDDFHQPEDPELSPSRTLQLVLTFSEYRPQMCQHSRRLARLGSAWIPHKDKFHRVHYRASAELQDDGSVQSTHDFLDGIGKSLAIDNNEELVRLLITMNPVFRLRDARTARDGIERLPWDDLSEQRLGELAGKLTDEPQRIGEPELKEALQAVQQLMEHYFSALAPIKHKPRSQREIVNRPMTLRNPGNLQVLLRNADNRALQLAMAGMAAMLLHARGNRELEEGARPILMLEDPESRLHPTMLALAWGLLEQLPGQKLLTTNSGDLLSSLPLNQVRRLVRRQHDILCHQLGGERYSSDDLRKIAFHVRINRPMSMFARCWLLVEGETEIWLLSELAQICGYSLRAEGVRIIEFAQCGQAPLIKVARDFGIEWHLLTDGDEAGAKYASSARSLLKGERERDRLTQLPSADIEHYLYQNGFEAVFRREAGVGGRSTLNAGRIISKAIHHRSKPGMALAVVEEAERLGSEHIPPMLKQMFARVVALARGQS
>NZ_CP038443.1|WP_171273862.1|3854782_3855502_-|hypothetical-protein
MFVQLPFWLFSLTGLMALGALIALGIVLWRGDLCPGQRSRITNQLFSIWVITGLSLMLGIEAGVTGWLPWCGGAALILGIVLSLAQSRLEGKRAIPATLLWLPAMPLTLYGLGLLQIQGWLNGVLQMVLLGSAFAHLMLLRARHRLQAFNLLLPLAGLLAAMLSLIWLAVLVSGQDNGAGLDALIPGVLTQAGLLIAALLLWFSPIYRQQETAPVVLSVTLCGLIIAQIAATSVLHQLA
>NZ_CP038443.1|WP_171273861.1|3851544_3853041_-|leucyl-aminopeptidase-family-protein
MMHAFNYLPPKITMQTTTLNEVMASNIPVKLLLVAESGRDALLAQPAFAGVASQIALGLPAPYRLADGQGLQLVLFVDSAPVVDHRLYKQIRTWTAPLAGLKVAQLALHLEGFDEAPRALLAELVLATLLAADVPLPTQKRADEAPIGYQSLTLSPPCALDLARIEAEAQGNGLARHLAVLPASELSAGSYRAFARQLAQQEGWQWQEFDEAALAKLGAGAFLAVARGSEDNQAAIVRLSYCPANPVRRIALVGKGICHDSGGYNLKVGGSMYGMHLDMGGSAVALGTLHAISRAKLPVEVHCWLAIAENHIGPKAYRPGEVVTALNGTTIEVVDTDAEGRMVLADALVLAAQGEPDLLIDYATLTGACKRALGSRYSGAFTNRPDWLPELIRLGQQSGERIWPFPLDEDFDDNLDSEWADLLQCAPGSSPDHIDAARFLSRFVPGQTPWLHLDLSGFRNKGGNGVVSSEVTGFGVRLSLTLLASPLGMAEPGTQAKI
>NZ_CP038443.1|WP_171273860.1|3850834_3851515_-|pyrimidine-5'-nucleotidase
MKQASYDWVLFDLDETLLDFPVAQALERTLQIYGVTPTPPRMAAYHELNHRLWQQYNSGEIDATRLQQTRFSMFAEQVNVAPMAMNDTFLQQIIALSVPLEGVEETLLALKSRVRMGIITNGFSLPQRGRLDKLGWNEWFEPLVISDEVQVTKPAAAIFQHALALMGQPSPARVLMVGDNPKTDIAGAAAQGLATCWYNPARQQGPSEATHEIHHFAHLSDIVLGR
>NZ_CP038443.1|WP_171273859.1|3849506_3850763_+|M20-family-metallo-hydrolase
MTQDALRHWRRDLHRLPEAAWCEFRTSALIAHHLCELGFSVMLGDKLLASNLIMGREIDVAAQKERALRQGAHPDWLARIDEITGVMGVWDSGRPGPTLGFRFDIDAVEVEESREPAHQPCQEGWHSANPGWMHACAHDGHTAIGLVLAERIAALADGLNGRIKLFFQPAEEGCRGGKALAAGGQLDDVDALLALHIGIHANSGELVINPTEFLCSTKFDVEFMGRAAHAGLEPNAGSNALAAACIATTAMLGIARHRDGMTRINIGQLNGGSGRNVIPGHARLQGETRGVSPALNDYMFGQVQQIVEGAAMMQGASYLIRKQGEAIGIENSPALLEEIVPLAEALKLETIHTRRFGASEDAGFLIERVQQHGGEAAYLILGANLAAPHHHPEFDFDEAVLAPGVALLEAWLLSRLGT
>NZ_CP038443.1|WP_005326082.1|3847328_3848300_+|6-phosphofructokinase
MTKQIKRIGVLTSGGDAPGMNAAIRAVVRAGLHHGLEVYGIYDGYLGLHQDRIVKLERHSVSDVVNRGGTFLGSARFPAFKDPKVRAEAIENLKKHGIDALVVIGGDGSYMGAKKLTEEGFPCIGLPGTIDNDIAGTDFTIGFDTALNVVVDAIDRLRDTCSSHHRISVVEIMGRHCGDLAMSAAVAGGAEYVIVPEVAFDKEKLLQQIKEGEAKGKKHAIITICEHVTDVNALAKDIEAMTGRETRATILGHIQRGGSPTARDRIMSSRMGAFAVEQLLAGQGGRCVGIQGNEMVHHDIIDCIENLKRPFDQELYDLSTTLF
>NZ_CP038443.1|WP_139751622.1|3863086_3864073_-|D-alanine--D-alanine-ligase
MKNMHVLLLCGGGGAEHEVSLRSANFLEQQLGLLPGVEVTRVEMFADRWLSADGRECKLGLDKLLSFDSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIGIPNTPYLFLTEQGDAALAEARAALAKWGKVFIKAASQGSSVGCYSASNEAELVQGIKDAFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTETALKAEGLTQAQSDAIHAYSLKAFRQLKLTHLSRIDFFLTEDGEILLNEINTFPGMTSISMFPKLLEHHGHSFAAFLEQNLRPV
>NZ_CP038443.1|WP_171273868.1|3865092_3865569_+|glutathione-peroxidase
MPLPPIPLQRLDGSEFPRDALQGKVLLVVNVASRCGFTPQYTGLEALHRQFGPAGLVILGFPCDQFGHQEPGDAEEIARFCSIDYPVSFPLMAKCEVNGEQAHPFYRWLKQRKPGLLGSEAIKWNFTKFLIDREGRVVDRFAPQTKPEDLAGAIQALL
>NZ_CP038443.1|WP_042648124.1|3865842_3867243_+|DEAD/DEAH-box-helicase
MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLHRLLANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDAIKLGVDILVATPGRLLDLLTQGALTLSALEVLVLDEADRMLDMGFITDIRRIMNALPEERQTLLFSATFSNDIKALADDLLNDPTLIEVDPSNTAADQVTQRVIQVDRERRREMLSHMIGRGNWQRVLVFVRTKQIADRLAQQMQKDGLNTVAIHGDKSQGARNRALADFREGKVRVLVATDIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLKDIEALIGQSLTVEIMEGYEPSGKPSRQTLPGSKPVQNPPRARGHANAKSNNAKGKPDAAKGKGKAKGDGPKKPAPARKREVVGEDIGFTPMRRLPKAQRDDYQDNSSEE
>NZ_CP038443.1|WP_171273869.1|3867312_3867750_-|acetyltransferase
MKIEQAQAADYQALIALWEASVRATHHFLQEADIIALKPLILEHYFAAVDLVCARGEEKIAGFCGVHDGNIEMLFIAPEARGSGVGRLLVAYAINRQGARRVDVNEQNAQALGFYQHLGFGVTGRSPLDGQGKPYPLLHMALAAE
>NZ_CP038443.1|WP_171273870.1|3867799_3868261_-|GNAT-family-N-acetyltransferase
MVVIRACKEQDLAGLLGLYAELRPRDPMLTPSVASAALRRLLAEPGVRILVAEVEGQLAATCQLGVIPTLTNGGRPFAIIEHVVTASAFRRQGLSQRVLAQALTLAWELDCYKVMLLSGEGREGAHRLYEKLGFKAGIEKGFVIKQAEARATP
>NZ_CP038443.1|WP_171273871.1|3868299_3868632_-|YnfA-family-protein
MLEFKTIGLFLITAVAEIVGCYLPYLWLTQGRSAWLLLPAGLSLALFAWLLSLHPTAAGRVYAAYGGVYIFVAILWLWAVDGIRPTLWDWVGSGVALTGMAIIMFAPRSA
>NZ_CP038443.1|WP_171273872.1|3868761_3869607_-|hypothetical-protein
MQITRLNRFIGLGVAGNFAGHLEQAGEAADFVAVKVADKVAPKALFPFYVPDHPGQLGVFPLSGEAIFLPEAAVSGDEKVQIEPEVALWCELEYAGEQVVAIHPKAFGAYNDCSIRRPNAKKISEKKNWGEESKGLATTLLPLGHFAPGCELDDYRIACYLERDGELHPYGVDSAAVDYSYFHRQLLDWAIDKFNHQQDEGPAEHIQGLLAQAGRPAHALISIGATRYTPFGETHFLAPGDTACVVVYPASRYGEADIREAIGSRTFGPDVSALLQAVRVR
>NZ_CP038443.1|WP_171273873.1|3870063_3870576_+|DUF4823-domain-containing-protein
MKHYLSALLSLLAVGCSSTYQQADLQALTSKLDASQGVLISQPQDGSYETTQYQNSGQMTAQVIYAAFSKKAQKVELTTHCHGDPCLNSIEPTQFRYYVKPVILHWEERATEWSGKPDIIEIQILIYDTLSKKNIANGSFKGKSKWATLGGDHPQDLLPEPTEKYVDTLY
>NZ_CP038443.1|WP_171273874.1|3870601_3870994_+|NUDIX-domain-containing-protein
MIDKLAWLTFKEGQLLCARSHGKALYYIPGGKREPGESDEAALVREIAEELAVSLKPETLCLACEFSAQADRKPQGVNVNLRCYTGEADGSPTASAEIAELRWLDSRHLDDISPVSRLLFQWLAEQGLIR
>NZ_CP038443.1|WP_171273875.1|3871095_3871602_+|GNAT-family-N-acetyltransferase
MEILEVDSTRGIKPALITLLQDCVASGASVGFLPPLQEERGLEYWQGIEGELADGVRKLWVAFDQHHLVGALQLSLCTKANGGHRAEVEKLMVHSQARGKGVGRALMNAMEQGAREAGRTLLVLDTRVGDIASTLYRQLGYQEAGQIPNFARNADGTLAATQFFYKQL

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Crispr_ID: NZ_CP038443_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_10

4027802-4027942

Orphan

Consensus_repeat	Method
TGAACATGGAAGAGCCGAAGAAATGAACCCGAGTCATCACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_10

>merge|NZ_CP038443|10|4027802-4027942|CRISPRCasFinder
TGAACATGGAAGAGCCGAAGAAATGAACCCGAGTCATCACCAGCCCATGCTCAATCAGCAAGGCCAAGGGACATCCATTTCCCAGCTGCCACTTCCCGCTGAACATGGAAGAGCCGAAGAAATGAAGCCGAGTCATCACCA

>NZ_CP038443|10|10|4027802-4027942|CRISPRCasFinder
TGAACATGGAAGAGCCGAAGAAATGAACCCGAGTCATCACCA	GCCCATGCTCAATCAGCAAGGCCAAGGGACATCCATTTCCCAGCTGCCACTTCCCGC
TGAACATGGAAGAGCCGAAGAAATGAAGCCGAGTCATCACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_005325348.1\|4025814_4026708_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226640
NZ_CP038443.1\|WP_106886961.1\|4021086_4021764_-\|phage-shock-protein-PspA	unknown	unknown	gnl\|CDD\|274372
NZ_CP038443.1\|WP_171273942.1\|4016403_4016742_-\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NZ_CP038443.1\|WP_025326766.1\|4035688_4036180_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|182773
NZ_CP038443.1\|WP_171273945.1\|4021959_4023003_+\|phage-shock-protein-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|274371
NZ_CP038443.1\|WP_111910994.1\|4028046_4028832_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226637
NZ_CP038443.1\|WP_171274380.1\|4029863_4030874_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NZ_CP038443.1\|WP_167332171.1\|4037951_4039289_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|237355
NZ_CP038443.1\|WP_041205890.1\|4039441_4040050_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|178807
NZ_CP038443.1\|WP_106886960.1\|4020846_4021083_-\|envelope-stress-response-membrane-protein-PspB	unknown	unknown	gnl\|CDD\|236526
NZ_CP038443.1\|WP_171273948.1\|4031127_4032582_+\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182081
NZ_CP038443.1\|WP_005325374.1\|4036367_4037663_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP038443.1\|WP_106886959.1\|4020350_4020752_-\|envelope-stress-response-membrane-protein-PspC	unknown	unknown	gnl\|CDD\|132023
NZ_CP038443.1\|WP_163155166.1\|4024810_4025770_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185065
NZ_CP038443.1\|WP_171273944.1\|4018867_4020274_-\|YcjX-family-protein	unknown	unknown	gnl\|CDD\|367902
NZ_CP038443.1\|WP_025326767.1\|4034149_4035670_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP038443.1\|WP_171273949.1\|4032613_4034044_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP038443.1\|WP_171273943.1\|4017805_4018837_-\|TIGR01620-family-protein	unknown	unknown	gnl\|CDD\|235449
NZ_CP038443.1\|WP_171273947.1\|4028976_4029735_-\|tRNA-(ms[2]io[6]A)-hydroxylase	unknown	unknown	gnl\|CDD\|114868
NZ_CP038443.1\|WP_043131988.1\|4016790_4017585_-\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_005325348.1\|4025814_4026708_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226640	COG4171, SapC, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.44465e-122
NZ_CP038443.1\|WP_106886961.1\|4021086_4021764_-\|phage-shock-protein-PspA	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	8.38211e-87
NZ_CP038443.1\|WP_171273942.1\|4016403_4016742_-\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	6.92203e-45
NZ_CP038443.1\|WP_025326766.1\|4035688_4036180_-\|CvpA-family-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	9.09577e-79
NZ_CP038443.1\|WP_171273945.1\|4021959_4023003_+\|phage-shock-protein-operon-transcriptional-activator	gnl\|CDD\|274371	TIGR02974, psp_operon_transcriptional_activator, psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions].	0
NZ_CP038443.1\|WP_111910994.1\|4028046_4028832_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226637	COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	2.5307e-130
NZ_CP038443.1\|WP_171274380.1\|4029863_4030874_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	1.53104e-109
NZ_CP038443.1\|WP_167332171.1\|4037951_4039289_-\|AAA-family-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP038443.1\|WP_041205890.1\|4039441_4040050_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|178807	PRK00031, lolA, outer membrane lipoprotein chaperone LolA.	3.41512e-68
NZ_CP038443.1\|WP_106886960.1\|4020846_4021083_-\|envelope-stress-response-membrane-protein-PspB	gnl\|CDD\|236526	PRK09458, pspB, envelope stress response membrane protein PspB.	5.19923e-38
NZ_CP038443.1\|WP_171273948.1\|4031127_4032582_+\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	gnl\|CDD\|182081	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional.	0
NZ_CP038443.1\|WP_005325374.1\|4036367_4037663_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP038443.1\|WP_106886959.1\|4020350_4020752_-\|envelope-stress-response-membrane-protein-PspC	gnl\|CDD\|132023	TIGR02978, Phage_shock_protein_C., phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	4.77531e-57
NZ_CP038443.1\|WP_163155166.1\|4024810_4025770_+\|ABC-transporter-permease-subunit	gnl\|CDD\|185065	PRK15110, PRK15110, peptide ABC transporter permease SapB.	1.55461e-112
NZ_CP038443.1\|WP_171273944.1\|4018867_4020274_-\|YcjX-family-protein	gnl\|CDD\|367902	pfam04317, DUF463, YcjX-like family, DUF463. These proteins possess a P-loop motif.	0
NZ_CP038443.1\|WP_025326767.1\|4034149_4035670_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP038443.1\|WP_171273949.1\|4032613_4034044_+\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP038443.1\|WP_171273943.1\|4017805_4018837_-\|TIGR01620-family-protein	gnl\|CDD\|235449	PRK05415, PRK05415, hypothetical protein; Provisional.	3.83909e-115
NZ_CP038443.1\|WP_171273947.1\|4028976_4029735_-\|tRNA-(ms[2]io[6]A)-hydroxylase	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	4.35452e-91
NZ_CP038443.1\|WP_043131988.1\|4016790_4017585_-\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	1.04129e-145

>NZ_CP038443.1|WP_005325348.1|4025814_4026708_+|ABC-transporter-permease-subunit
MHDKSNIYPELKILSPLEQTWASYRRNPLAMGGLWCFGLLLLITLVGPLVVPYGIDDQHSGRLLLAPSWASTGNIDYFLGTDDLGRDILSRLVVGARLTFGNALLVVVIALLVGSAIGILGGMSKGVKSSVLHHLLDTLLSIPSLLLAIIVVAILGPGLFNTLIAITLALIPPFIRATYNAVHAEMQKEYIIASRLDGSPPLRIMRLAILPNIVETLVTQTTRTLSAAILDISAVGFLGLGAQSPQPEWGAMLADSSDLIYLAPWTVTLPGMAILFSVLVTNLVGEGIREALKEGND
>NZ_CP038443.1|WP_163155166.1|4024810_4025770_+|ABC-transporter-permease-subunit
MFFYILRRITLLVITLLVLTMGAYLLEFRLIGQVLDFWHGYPDFLQRIAAGDFGFSSVSGLPVLDEIRHYFPATLTLCLAAFAISLLVGIPLGTLAALYQGRGLDLSIMAAGLIGYAVPVFWLALLMVMFFSLDLGWLPSSGQISLLYDVPSITGIAIVDVLMSQEPWREAALHDALRHLVLPSLVLAVVPTTEVIRHVRSSLIDVMKQNYIKAAASRGLSRRQIVWRHGLKNALPPVLPLLGLQLGSVLTSAMITEVVFDWPGIGRWLVSSIALQDYAAIRGAFLVVASFVIFISVSTELLTTIMYPARRKELYAKQD
>NZ_CP038443.1|WP_171273945.1|4021959_4023003_+|phage-shock-protein-operon-transcriptional-activator
MTTATESLLGESNAFLEIIEQASRLAPLRKPVLIIGERGTGKELIAHRLHYLSDRWDQSFVTINCATLSESLLETELFGHEAGSFTGAAKRHQGRFERADGGTLFLDELATTSARVQEKLLRVIEYGEFERVGGAKALKVDVRLVCATNEDLPQLAARGQFRHDLLDRLAFDVITLPPLRERREDILMLAEHFAHGMTRELGYPLFAGFSRKATQLLQDYPWPGNVRELKNVVERSLYRQGNPQLPLSELVINPFDSPWRPRTGSPSPVASEATSASGPQAMSLPLDLKGAVAEYEINLLKQAMQQSQYNQRKAAQLLTLSYHQFRGMLRKYQLLDGDDNSGNQEAG
>NZ_CP038443.1|WP_106886961.1|4021086_4021764_-|phage-shock-protein-PspA
MSIFSRLADIINSNLTSLLDKAEDPQKMVRLIIQEMEDELVKERSNLARFLANQKEIGRQVSRHQERVNEWQAKAELALTKGREDLARAALIEKNKQSELAEALYREQQAVDSGIDKLGDEIRQLEAKLEDARARQKAMAIRSEAASSRLNVQSQVARGDSQAVVSKFERMERRIDEMEARADLGQSDKALAQQFAELEADDQISRELEAMRQKLGQSDTASKGE
>NZ_CP038443.1|WP_106886960.1|4020846_4021083_-|envelope-stress-response-membrane-protein-PspB
MEDILGILATPLIVFMVIVAPIWLVLHYRAKGRIGAGLADNEREQLQGLLVRAEKMQERVGALESILDAEVPGWRNKV
>NZ_CP038443.1|WP_106886959.1|4020350_4020752_-|envelope-stress-response-membrane-protein-PspC
MSASNNSRNLYRDPQKGKIAGVCAGLADYFGVETWIVRLLAITGLIFAGFITFTAYIAAWFLLDKKPVTLYGEQEADFAEVRMKARSWQAGVTPHQALGRIAQELDTLEPRLQRIEKLVTSKEFTLQREFSKL
>NZ_CP038443.1|WP_171273944.1|4018867_4020274_-|YcjX-family-protein
MIRNKLEQSWSVLQHKAFEVVNRARDRHIRLAVTGLSRSGKTAFITALVNQLEHAAIDGRLPLWDAQRQGRILGARRVPQQNAHIPTFPYERGLDALFGDPPAWPEPTRGVAEVRLEIRYRTRHPVRRHLGEISTLYVDLVDYPGEWLLDLPLLDLDYEQWSEQVASQLRRPELQALAADWLTPGWQAEQAFEERPASQLAERYTDYLHACKRELGLHLIQPGRFVLPGEYAGAPLLQFVPWVWDKPAQEPADGSLYATFKQRFEQYKQHLVQGFYEQHFAGFDRQIVLVDCLAPLNAGAASFGDMQQAIARIMESFAYGKSNWWRRLFSPRIDKLLFVASKADHVTPEQHGPLVSLLQHLVSSGRGQARFEGIETECLALAAIKATEVGKGQANGREFPAIRGTSLAGEPLLLFPGEVPPQIPPAQWWQSQGFDFQAFRPMPMSAHQALPHIRLDAALEFLLGDHLE
>NZ_CP038443.1|WP_171273943.1|4017805_4018837_-|TIGR01620-family-protein
MNDQTTQTMPLQGKVILEPTLSVASEAPPPAPAQRLEEESFERLEELDEFTEVAQALTVRPRRRHRLLGWGLGAVGLLSLGQFGAFLYDQFLTTPLWGGAWLLASGLVAVGTAGVVGREWLRLRTLKRRQDVRSRAEDLLAHQGVGQGQAFCEALAEKSGDKGREGYRTWLGQLDESHSDREVLTLYSQLVLGERDKLAQARVAKWSGEAAVLVALSPLATVDMMLMLWRNLRMIEDIADVYAIELGYWSRIRLIRQVFRNMLYAGATELVTEVGMDLLGAELTAKLSARAAQGVGAGLLTARLGLRTIEACRPLPWCADEKPRLGELRKRLVGQLAGYLRKS
>NZ_CP038443.1|WP_043131988.1|4016790_4017585_-|phenylalanine-4-monooxygenase
MASSYTAHQPDEQGVIHYSEEEQGTWQILIARQLAALEGKACDAYRAGLARLALPRDRIPQLGEINAALTPATGWSVAAVPALISFDRFFALLADRQFPVATFIRRRDELDYLQEPDIFHEIFGHCAMLTNPAFAHFTHLYGQLGLNASKEDRVYLARLYWFTVEFGLVQEGDDLRIYGGGILSSIGETAYALSGQPVLQPFDLLEVLRTPYRIDIMQPTYFVLPNLACLYRLGPQEIMAAVAEARRLGLRPPRFAPAPGRQAS
>NZ_CP038443.1|WP_171273942.1|4016403_4016742_-|4a-hydroxytetrahydrobiopterin-dehydratase
MSELATQRCEACRADAPRVTEQELSELMHAIPDWQPLVVNGELQLRREFAFRNFKEALAFTNRLGELAEAEFHHPAILTEWGKVTVSWWTHKIGGLHRNDFIMAARTDELMT
>NZ_CP038443.1|WP_111910994.1|4028046_4028832_+|ATP-binding-cassette-domain-containing-protein
MIEPALLQVRGLCKTYQNRTGLFRRQAVEAIKPLSFDLGVGQTLAIVGEAGSGKSTLARILAGMIEPSGGEIAIEGQPLVHGDYQTRCKLLRMIFQDPNTSLNRKIRVGQILETPLRLNTALSEEERREKVVQTLRMVGMLADHALFYPQMLSAGQQQRVGLARALILNPKIVVADEALSTLDISVRSQIINLLLEMQETTGLSYVLVANDLGIVSHISDEVLVMHEGRVVERGKTLKVFADPQHDVTRRLIQNYNNEYRR
>NZ_CP038443.1|WP_171273947.1|4028976_4029735_-|tRNA-(ms[2]io[6]A)-hydroxylase
MDDLLAPVRQFLHCETPDEWVEMARDPAQLPTLLIDHANCENKAALTAHSLVRRYCLPKEKRHLLPKLEFYRELDAIPEKAEILGKRTMGESDRSVFAELERNPLLFPMVRLIQEELHHFEQVLEIMQARGIPYGPVTASRYARSLLAHVRTYEPAAVVDKMIIGAYIEARSCERFAKIAPHLDEELGRFYVSLLRSEARHYQDYLVLAEQYAGEDISERVAYFGRIEAELICSPDPQFRFHSGLPVRSDSC
>NZ_CP038443.1|WP_171274380.1|4029863_4030874_-|LacI-family-DNA-binding-transcriptional-regulator
MTTMLEVAKRAGVSKATVSRVLSGNGYTSQETRDRVFQAIEESGYRPNLLARQLATKNTQTLGLVVTNTLYHGVYFSELLSHAARLTEDRGRQLILADGKHSAEEERQAIQYLLDSRCDGVIIYPRFLSVEEMDEIIEQHSQPIMVLNRRLRRHPAHCVYSDQQAAAAAVVDRLVGMGHRDIAFITGSADSPTGMERLAGYKQALVRHEIPLRDELIAQGKWTPACGAAGVSILLARGVSFSALIASNDDMAIGAIKQLHECGLSVPEQVSVVGFDDIALAPYVIPSLASVKMPVTEMIQETISRLITMVEEGEPEALPSFSGKLVRRDSLKRLLE
>NZ_CP038443.1|WP_171273948.1|4031127_4032582_+|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC
MSKNYAALAGKVITALGGTGNIVAVTHCMTRLRFVLQDPTLVDSPTLKATAGVLGVVSSDNQCQVIIGNMVSHAYREVLAQLPEGAQGDLPAAKPGFSLRRLGAAILDALIGTMSPLIPAIIGGSMLKLLAMLLEMTGVLEKGSSTLTILTVAGDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMARAAQGEQVTFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGTAISGLVYTVHDYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWRTKNPELRQTALAAAASAIMAGISEPALYGVALRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIAWVFAVMALSVVLSFVLTLLMGFEDIPVEVPGESAAPQPVAASQTQATAGA
>NZ_CP038443.1|WP_171273949.1|4032613_4034044_+|6-phospho-beta-glucosidase
MSLARFPQGFLWGGALAANQAEGAYLEGGKGLTTVDMIPHGANRMAVKLGQEQRFTLRDDEFYPSHEAIDFYHRYKEDIALMAEMGFTVFRTSIAWARLYPKGDEAEPNPEGIAFYRAMFEECRKYGIEPLVTLCHFDVPMHLVVEYGSWRNRQMVDFFTRYARTCFEAFDGLVKYWLTFNEINILLHSPFSGAGLVFEEGEDREQVKYQAAHHELVASALATRIAHEVNPHNQVGCMLAGGNFYPYSCKPEDVWAALQKERENLLFIDVQARGAYPAYAASLFREKGIQLVKAPEDDDILKHSVDFVSFSYYASRCASADMNAGNTSAANVVKSLRNPHIEVSEWGWGIDPLGLRITMNSLYDRYQKPLFLVENGLGAIDEINAAGEIEDDYRIDYLRAHISAMGDAIADGVPLLGYTSWGCIDLVSASTGEMSKRYGFVHVDRDDAGQGTLARRRKKSFWWYRQVIASNGEDLA
>NZ_CP038443.1|WP_025326767.1|4034149_4035670_-|amidophosphoribosyltransferase
MCGIVGIVGTTPVNQALYDALTVLQHRGQDAAGIVTIDSGNFRQRKANGLVKDVFEVRHMQRLKGHIGIGHVRYPTAGSSSAAEAQPFYVNSPYGMVLAHNGNLTNAKDLKEQQFKVARRHINTTSDSEVLLNVLAHELDLCDKMALRPEDIFSAVRKVHQQIRGAYAVVSLVIGHGLIGFRDPNGIRPLILGRRVDDQGQVEYMLASESVALDAIGFETVRDVAPGEAIYITEQGQLFSEQCAENPQMSSCIFEYVYFARPDSCIDKVSVYAARLNMGRKLGKKIAREWEDLDVDVVIPIPETSCDVALEIAHTLGLPYRQGFVKNRYIGRTFIMPGQTQRKKSVRRKLNAISSEFKGKKVLLVDDSIVRGTTSEQIIQMAREAGAAKVYFASAAPEIRFPNVYGIDMPTANELIAHGREVEEVCKLIGADGLIFQDLEDLEEAVREINPELRHFETSVFNGHYVTSDVDQGYLDHLNALRSDDNKAVREWQEGTSNLEIFNEGS
>NZ_CP038443.1|WP_025326766.1|4035688_4036180_-|CvpA-family-protein
MVWIDYAIIGIVGFSALISLVRGFLKEAMSLVTWFVAFFIASHFYPDLAVYFTSFSDAMVRNGLAIAALFVATLILGSVVNYVVGLLVEKTGLSGTDRVLGVCFGAIRGVLIVSALLFFMDTFTSLSQSDWWVASRLVPEFKPVIQWFFGFMLNSSSFLQQVQ
>NZ_CP038443.1|WP_005325374.1|4036367_4037663_-|serine--tRNA-ligase
MLDPKYLRSDIEEAAARLATRGYALDVAAVNALEEKRKDLQSRTQELQAERNARSKSIGEAARRGEDVAPLKAEVTKINDELETSKVELEALLADIKAISDAIPNLPSDTTPVGRDENDNVEVRRWGTPREFSFPVRDHIDLGEAAKGVDFKNGVKLSGARFVVMKGQIARLHRALAQFMLDLHTLQHGYTECYVPYLVNPDSLYGTGQLPKFSQDLFNTGIEGEGEDEGKVRKFSLIPTSEVPLTNMARDEIFDEQELPIKMTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQLVHPEKSWDALEEMVGHAEKVLQLLELPYRVMALCTGDMGFCAAKTYDLEVWLPAQNTYREISSVSNCTDFQARRMQARVRVDGKPQLLHTLNGSGLAVGRTLVAVIENYQQEDGRIAIPAALQSYMGGLTHIG
>NZ_CP038443.1|WP_167332171.1|4037951_4039289_-|AAA-family-ATPase
MSNLSLDFSSDFRPLAARMRPQNLDQYIGQQHILGADKPLRKAILAGHCHSMILWGPPGTGKTTLAELMAHYCQAEVERLSAVTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIEDGTITFIGATTENPSFELNNALLSRARVYLLKRLEEEDILAMIDQAMTDPRGLNDPSLTFAPGVKAALAKAVDGDGRKSLNYLELLADMAEANGTGERVIDSALLAAVVGEHVARFDKGGDHFYDLISAVHKSIRGSAPDAALYWYARMVSAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFHRIGPAEGERAIAQAIVYLACAPKSNAVYTAWKAALNDAKNLPDFEVPPHLRNAPTKLMSELGYGAEYRYAHDEPGAYAAGEEYFPPELAGKHYYQPTDRGLEKQIAQKLDYLRELDRQSPRQRDK
>NZ_CP038443.1|WP_041205890.1|4039441_4040050_-|outer-membrane-lipoprotein-chaperone-LolA
MKKALLMGSVLLLASSQVWADAASDLKQKLTGVSLFSAKFAQTVYDSKGKELQKASGTLLVQRPNRFNWHTTTPDESLIVADGKDVWVYDPFVEQVTALKMKDAVLNTPFVLIAGNDVGLWKHYDVTQEGDVYTVTSRNKDELIASFRITFDRQNNISRFDVKEAQGQWSEFTLSSFNRKPLLKGNEFVFKIPKGVALDDQR

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Crispr_ID: NZ_CP038443_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038443_11

4460663-4460802

TypeV-U4

Consensus_repeat	Method
TCAGCCTCCGGTCGTTACTGGAAGGAGAGGGAAGAAGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038443_11

>merge|NZ_CP038443|11|4460663-4460802|CRISPRCasFinder
TCAGCCTCCGGTCGTTACTGGAAGGAGAGGGAAGAAGGCGGCCTCATGCCAGTCCCACAGCGCCGTTGTGCGATCCACGGTCGTTATCTCGCTCATTCTCAGCCTCCGGTCGTTACTGGAAGGAGAGGGAAGAAGGCGGC

>NZ_CP038443|11|11|4460663-4460802|CRISPRCasFinder
TCAGCCTCCGGTCGTTACTGGAAGGAGAGGGAAGAAGGCGGC	CTCATGCCAGTCCCACAGCGCCGTTGTGCGATCCACGGTCGTTATCTCGCTCATTC
TCAGCCTCCGGTCGTTACTGGAAGGAGAGGGAAGAAGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038443.1\|WP_171274115.1\|4454618_4455851_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP038443.1\|WP_171274114.1\|4451689_4453237_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038443.1\|WP_139751003.1\|4465102_4467592_-\|nitrate-reductase-catalytic-subunit-NapA	unknown	unknown	gnl\|CDD\|237416
NZ_CP038443.1\|WP_005325513.1\|4462425_4463016_-\|cytochrome-c3-family-protein	unknown	unknown	gnl\|CDD\|131216
NZ_CP038443.1\|WP_005325504.1\|4458570_4459251_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NZ_CP038443.1\|WP_041206124.1\|4463027_4463483_-\|nitrate-reductase-cytochrome-c-type-subunit	unknown	unknown	gnl\|CDD\|367715
NZ_CP038443.1\|WP_041206121.1\|4456668_4457448_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|211851
NZ_CP038443.1\|WP_043132898.1\|4453609_4454266_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP038443.1\|WP_005325503.1\|4457518_4458574_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131197
NZ_CP038443.1\|WP_005325506.1\|4460173_4460659_-\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NZ_CP038443.1\|WP_041206126.1\|4463482_4464358_-\|quinol-dehydrogenase-ferredoxin-subunit-NapH	unknown	unknown	gnl\|CDD\|236535
NZ_CP038443.1\|WP_005325518.1\|4464354_4465089_-\|ferredoxin-type-protein-NapG	unknown	unknown	gnl\|CDD\|236534
NZ_CP038443.1\|WP_005325509.1\|4461100_4461595_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP038443.1\|WP_171274113.1\|4449886_4451617_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|237404
NZ_CP038443.1\|WP_171269543.1\|4468017_4468527_-\|ferredoxin-type-protein-NapF	unknown	unknown	gnl\|CDD\|319886
NZ_CP038443.1\|WP_041207033.1\|4461676_4462204_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NZ_CP038443.1\|WP_005325505.1\|4459360_4460089_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270257
NZ_CP038443.1\|WP_005325507.1\|4460858_4461104_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
NZ_CP038443.1\|WP_005325501.1\|4455847_4456603_+\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP038443.1\|WP_171274116.1\|4467718_4468021_-\|chaperone-NapD	unknown	unknown	gnl\|CDD\|367731

Protein	Function_ID	Function_description	E-value
NZ_CP038443.1\|WP_171274115.1\|4454618_4455851_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP038443.1\|WP_171274114.1\|4451689_4453237_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.55865e-70
NZ_CP038443.1\|WP_139751003.1\|4465102_4467592_-\|nitrate-reductase-catalytic-subunit-NapA	gnl\|CDD\|237416	PRK13532, PRK13532, nitrate reductase catalytic subunit NapA.	0
NZ_CP038443.1\|WP_005325513.1\|4462425_4463016_-\|cytochrome-c3-family-protein	gnl\|CDD\|131216	TIGR02161, Cytochrome_c-type_protein_NapC, periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.	8.30223e-122
NZ_CP038443.1\|WP_005325504.1\|4458570_4459251_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	2.83186e-76
NZ_CP038443.1\|WP_041206124.1\|4463027_4463483_-\|nitrate-reductase-cytochrome-c-type-subunit	gnl\|CDD\|367715	pfam03892, NapB, Nitrate reductase cytochrome c-type subunit (NapB). The napB gene encodes a dihaem cytochrome c, the small subunit of a heterodimeric periplasmic nitrate reductase.	2.73122e-65
NZ_CP038443.1\|WP_041206121.1\|4456668_4457448_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.23931e-22
NZ_CP038443.1\|WP_043132898.1\|4453609_4454266_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	1.17007e-104
NZ_CP038443.1\|WP_005325503.1\|4457518_4458574_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131197	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions].	2.8742e-92
NZ_CP038443.1\|WP_005325506.1\|4460173_4460659_-\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	4.67389e-78
NZ_CP038443.1\|WP_041206126.1\|4463482_4464358_-\|quinol-dehydrogenase-ferredoxin-subunit-NapH	gnl\|CDD\|236535	PRK09477, napH, quinol dehydrogenase membrane component; Provisional.	2.47826e-151
NZ_CP038443.1\|WP_005325518.1\|4464354_4465089_-\|ferredoxin-type-protein-NapG	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	7.42628e-153
NZ_CP038443.1\|WP_005325509.1\|4461100_4461595_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	4.71655e-101
NZ_CP038443.1\|WP_171274113.1\|4449886_4451617_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|237404	PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional.	0
NZ_CP038443.1\|WP_171269543.1\|4468017_4468527_-\|ferredoxin-type-protein-NapF	gnl\|CDD\|319886	cd10564, NapF_like, NapF, iron-sulfur subunit of periplasmic nitrate reductase. This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.00247e-64
NZ_CP038443.1\|WP_041207033.1\|4461676_4462204_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.73657e-91
NZ_CP038443.1\|WP_005325505.1\|4459360_4460089_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270257	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate is where the central metal atom is in a hexacoordinate configuration. This octahedral geometry was rather unexpected. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.22627e-76
NZ_CP038443.1\|WP_005325507.1\|4460858_4461104_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	2.76853e-54
NZ_CP038443.1\|WP_005325501.1\|4455847_4456603_+\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	9.34517e-158
NZ_CP038443.1\|WP_171274116.1\|4467718_4468021_-\|chaperone-NapD	gnl\|CDD\|367731	pfam03927, NapD, NapD protein. Uncharacterized protein involved in formation of periplasmic nitrate reductase.	7.7693e-28

>NZ_CP038443.1|WP_005325506.1|4460173_4460659_-|molybdopterin-synthase-catalytic-subunit-MoaE
MSQATTTPTDRILVQRADFSLGEEYERLATRHDSGAIVTFVGKVRDFNQGDAVKGLSLEHYPGMTEKALVDIVNQARARWPLQECTLIHRIGDLLLGDQIVLVAVSSAHREAAFEACHFIMDFLKTRAPFWKKELTAEGIQRWVEAKQSDDAAAARWRQDP
>NZ_CP038443.1|WP_005325505.1|4459360_4460089_-|molybdate-ABC-transporter-substrate-binding-protein
MKKQLSVVLLGLVAGALYSGAAQADEVKVAVAANFKGTMERIGKAFTAKTGHRVVISSAATGVLYTQITHGAPFDIFLSADVATPQKLEAEGKGSDRFTYAIGQLGLWKKGGPAPDETTLRSWKGNLAIANPKTAPYGTAAMATLARLKIDPKQYRVLTGTNISQTWQFVDTGNAELGFVAWANLVEAGKTGEAWAVPASFYPPIEQQGLILKKGAAVEALVAWLKGPGQEQIKAAGYALPQ
>NZ_CP038443.1|WP_005325504.1|4458570_4459251_-|molybdate-ABC-transporter-permease-subunit
MSEGDLQAVWLTLKLAASTTAILLLLSPPLAWWLSRSQHRLRPLVEALVALPLVLPPTVLGFYLLLAFSPEYGLGAWWRETFGTPLAFSFLGLLFASILYSLPFVVQPLTSAFVNMGNKEIEAAATLGLGPLERFFQIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGGNIPGETQVLSIALFDHVEAMDYQHAHYLAGGLMGFSLVMLVLVYGVLQRRQRRLFG
>NZ_CP038443.1|WP_005325503.1|4457518_4458574_-|molybdenum-ABC-transporter-ATP-binding-protein
MSLHLKAWRRFGGFELDCDLTLPLGGILGLFGPSGCGKSTLLRIIAGLDRAPSDVLHWQGRDLAALLPEARRIGLVFQDSRLFPHMTVLGNLQLAAGKGRGRWQHEALAMRLGFADLLGQPAHGLSGGQRQRVALGRALLAEPDLLLLDEPFSALDSRSRIHQAHVLKGLQRESGIPMIFVSHAMEEVSLLCDQLVLQEGGRVEAQGRPSEIFARTDLSLASRDDAGVMLTATLAHYDDAEQMATLQLGDQTLMVTMEHAPDETGELQIKVAGRDLVIATAPIVHSSLSNCLETRLLEAREVRPGQTLLQLALGQQILLARITSRSAQRLALVPGQRLYAYIKAVSLVGEG
>NZ_CP038443.1|WP_041206121.1|4456668_4457448_-|alpha/beta-fold-hydrolase
MRRNQVMKSHGLALRSAGEGPLLLLLHGLGSSSLDWQAQIEHFSQHYRVVALDLRGHGQSMQEGPFDVPTLAADVARWLEEQPEPAWVVGLSLGAMVALELALRLPHKVRGLVLVNGFSEFLLETPREQERHAMRLKWLRWFGMRPLAWWLGRELFPGPELAQVRHTFRLRFVRSNKKKTYKALLEALPGWSVRARLGSLWQPVAIISTSHDYLPLAKRVEQFASLPNASIHTPEGHHAWPAEDPAGFNHLLQRILATH
>NZ_CP038443.1|WP_005325501.1|4455847_4456603_+|molybdopterin-synthase-adenylyltransferase-MoeB
MSEILSDAELLRYNRQIILKSFDFEGQEALKQARVLVIGAGGLGCAASQYLAVAGVGRLTLVDFDRVELSNLQRQVLHSDERIGMYKVDSAAQSLRALNPWLEVETHALLADEALLDALLPGHQLVLDCTDNVTIRNLLNQRARQHRVPLVSGAAIRLEGQLCSFTWQEDEPCYACLSALFGEQALTCVEAGVLAPVVGLVGSLQALEAIKLLAGMGKSHHGRLLMIDGLSSRFRELKLPKRPDCPVCSQP
>NZ_CP038443.1|WP_171274115.1|4454618_4455851_+|molybdopterin-molybdotransferase-MoeA
MMMGFDTGALLPLDKALQGMLEQLTCCCETEQLPLPQALDRILAEEISSPLSVPPFDNAAMDGYAVRLADLAAGAPLPVAGKAFAGQPYEGEWPVGHCIRIMTGAPVPAGTEAVVMQEETQEGGNGITFLTTPFLGQNIRRRGEDMAQGSRVLASGLRLSPRELPLLASLGIATVTVRRPLKVAIFSTGDELKPLGTPLAHGDIYDSNRYGVKAMLTRMGIACLDLGIIPDDPAALRAAFIQADCEADALITTGGVSVGEADFTKQLLEELGEIGFWKLAIKPGKPFAFGRLPNVWFFGLPGNPVSAMVTFDQLVQPALARLAGHHFARPLPLQAIATEPLKKAPGRLDFQRGMLSQGPNGLEVRSTGSQDSGVFSSLSRANCYIVLEQERGKVAAGETVTVEPFSGLLL
>NZ_CP038443.1|WP_043132898.1|4453609_4454266_-|GTP-cyclohydrolase-I-FolE
MTSLSQEALLVRAALEAQGLETPLVANELNGQQKKEKIEGHMRAIMETLGLDLTDDSLAETPHRIAKMYVNEIFSGLDYATFPKVTVIENKMKVDEMIMVRDISLTSTCEHHFVTIDGLAHVAYIPRGKVIGLSKINRIVQFFARRPQVQERLTQQILLALQTLLGTKDVAISIKATHFCVKARGVMDSTSYTTTTSLGGVFKTQPDTRAEFLGGLKG
>NZ_CP038443.1|WP_171274114.1|4451689_4453237_-|methyl-accepting-chemotaxis-protein
MNRAAIGFTDSILPAVVRTSTLGETINAVRRYELDVFLVADDPQQQAHYRNESEKSLQEAARQITAHDGTIWAEDLEERRTFDIVKADWEKYLGLHQRIRQMQDSGQMAEAQHLFMGEGVTLYTNLAKSVGDLVRINHGYADASRKVVVAAYDSAKLSVTLSLLVGLVLVVCLSVVLTRQIRDPLIMLARQAQRIASGDLGKGELQEWIRTSRFNRDELGQLGSAIDRMQGALADLVSEIAGSVSQLSSAVEEVSAISEQSAKGMASQQSEVSQVATAMNEMQSTVNEVARNTTDAMSAAKEASRTSTQGNQVVRSAIGSIEQVSQQIEQAGTVVSQLEADSASISMVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQASTAEISKMIALLQERTAEAGNAMQLSRQQMQESVGLAREAGGSIDSINGAVTQISDMNTLIATATEEQNAVTEELNRSIVNIHNAADENAQGAQQTAQACVELSKLANSLHQMTQRFTL
>NZ_CP038443.1|WP_171274113.1|4449886_4451617_+|formate--tetrahydrofolate-ligase
MLSDIEISRQSPRLSIQALAERLAIQPHQLSPQGHHKGKLSLELLKSRPGRAGQLVLVSAITPTPLGEGKTVTTLGLSMGLNHIGQPSIATIRQPSLGPVFGVKGGAAGGGHAQVVPMEEMNLHLTGDFHALSAAHNLAAAALDARLFHEQKLGEQFSARTGLSRLEIDPANILWPRTLDMNDRTLRHLTLGQGGPADGVERSDRFVITAASELMAILALASDLKDLRARIGRIQLALDNRGNPITAEQLEVAGAMTVLLKDALQPTLMQTTEQTPVLVHAGPFANIAHGNSSVIADRIALGLTDYVVTEAGFGSDMGLEKFFNIKSRQSGITPACVVLVATVRGLKANSGLLDIRPGQPLPASLLGEDLPTLKQGCANLAWHIQNARRYGVPVVVAINRFPTDSQAELDLLAREALAAGACDAAISHAFTDGGKGASELARAVVAACEQPSQVKLLYPNEMSLAAKLATLVECGYGGRGVRLSDKARQQLVRLSAEGWDHLPICVAKTPLSISHDPTLKGVPTDFEVPIDEVRLCAGAGFVYALAGPIMTMPGLGSLPAYRHIDIDENGEIVGLS
>NZ_CP038443.1|WP_005325507.1|4460858_4461104_-|molybdopterin-synthase-sulfur-carrier-subunit
MIKVLFFAQVRELVGCDELSLPSDYPTAEQLRAALCERGDKWALALESGKLLVAVNQTLVPLETALNDGDEVAFFPPVTGG
>NZ_CP038443.1|WP_005325509.1|4461100_4461595_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MNLTHLNQSGEAHMVDVTDKQVTEREARAEAFVTMAPATLALILGGQHHKGDVFATARIAGIMAAKKTADLIPLCHPLALTRVEVEIDAQPEHNRVHIRTLCKLSGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIEQVRLVEKKGGKSGHFQLGSQAGEKA
>NZ_CP038443.1|WP_041207033.1|4461676_4462204_-|molybdenum-cofactor-biosynthesis-protein-B
MAPKHNEFIPLKIAVLTVSDSRTAADDSSGDYLVSALTEAGHQLTDRALCPDNLFRIRAQVSDWIVDDGVQVVLINGGTGFNEQNRVPEAVGVLFERTVQGFGEMFRQLSFAEIKGSAMQSRALAGLANRTLICCLPGSTGACQLGWEQLIRDQLDARTRPCNFVAHLSTSAIPA
>NZ_CP038443.1|WP_005325513.1|4462425_4463016_-|cytochrome-c3-family-protein
MKLPGFIQRLWTTFKSPSKAALWVLLLMGFFGGVIFWGGFNTAMEASNTEKFCTGCHEMKDNVFVEYRDTIHYANRSGVRASCPDCHVPHEWTYKIIRKVQASKELWGMITGKVDTREKFESHRREMAEREWQRMKDTDSRECRNCHNFEYMDFSLQGKRGAQMHSTSLASGESTCIDCHKGIAHQLPDMKGVEGF
>NZ_CP038443.1|WP_041206124.1|4463027_4463483_-|nitrate-reductase-cytochrome-c-type-subunit
MKKLIGAMLACLMAGSLMAATPEITNSTGGIKSERGSTDLVTDADAAPMKNYRKDGDLYDRQYMHQPPLIPHDTRNYEVDNKVNKCLACHSFKNASKMKAPKISPTHFETRDGMTLGEVSPRRYFCLQCHVPQADAKPLVENTFKPVEALN
>NZ_CP038443.1|WP_041206126.1|4463482_4464358_-|quinol-dehydrogenase-ferredoxin-subunit-NapH
MSRYPGAEASARLGWWRAHRFLLLRRLCQFGVLGLFLLGPLAGVWILKGNLSSSLLLETVPLTDPLTLLQSVAAGHWPITTLWLGAGLVLLGYWLVGGRVFCSWVCPVNLVTDAAAWLRARLGLKGNGQFNRNTRYWLLAMVLVAPAITGVLVWELVNPVSLAMRGLLFGMGAGWGLLVALFLFDLFVVERGWCGHLCPVGAFYALVNRVGFIKISAKGRERCSNCMDCYAVCPERPILRGPVHGARRGHGPLIVAQECTNCGRCIDVCAEQVFEITTGFAVKAEKTSENK
>NZ_CP038443.1|WP_005325518.1|4464354_4465089_-|ferredoxin-type-protein-NapG
MSRSRRQFLADLAKGACSVGLLGVGLGSVARQQVQAVPAQALRPPAALGEADFLGACVRCGLCVEACPYDTLKLARLLDPVTTGTPYFEARSVPCEMCDDIPCVVACPSGALDQGMTDIDQARMGVAVLIDHETCLNYLGLRCDVCYRVCPLIDKAITLELQRNPRTGKHAMFLPTVHSDICTGCGKCEHACVLETAAIKVVPRQLAKGELGHHYRLGWEEKAKAGKSLIGERLTLPTRKPEGL
>NZ_CP038443.1|WP_139751003.1|4465102_4467592_-|nitrate-reductase-catalytic-subunit-NapA
MKLSRRDFMKANAVAAAAAVAGVSAPTLAANLITSTDKTAITWDKAPCRFCGTGCSVLVGSQAGRVVATQGDPDAPVNRGLNCIKGYFLSKIMYGEDRLTQPMLRMTNGKFDKNGDFAPISWDQAFDIMAEKFKATLKEKGPTAVGMFGSGQWTVWEGYAAAKLMKAGLRTNNLDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGSNMAEMHPILWSRMSDRRLSNPDVQVHVLSTFEHRSFELADNGMVFTPQTDLAILNYIANYIIQNDKVNWDFVNKHTQFRKGVTDIGYGLRPTHPTQQKAKNPDSGDSTPMSFDDFAKFVADYDVESVAKLSGVSKDKLEKLAQIYADPDKKVVSYWTMGFNQHTRGVWANNLCYNIHLLTGKISTPGSGPFSLTGQPSACGTAREVGTFAHRLPADMVVTDPKHRAIAEKIWKLPEGTIPEQVGYHAVLQNRMLKDGKLNAYWVMCNNNMQAGPNMNEEGLPGYRNPANFIVVSDPYPTVTAQAADLILPTAMWVEKEGAYGNAERRTQFWHQQVKAPEGAKSDLWQLMEFSKRFTVEEVWPAELIAKMPEVKGKTLFEVLYANGQVNQFPKEQSKGALNDEAEHFGFYVQKGLFEEYASFGRGHGHDLAPFDQYHEARGLRWPVVDGKETLWRYREGFDPYVKAGEGVKFYGKPDGKAVIFALPYEPAAEAPDKEYDMWLSTGRVLEHWHTGTMTRRVPELYRAFPDAVLFMHPEDAKARGVRRGEEVIVSSRRGEVKTRVETRGRNRPPKGLVFMPFFDASQLVNKLTLDATDPLSKETDYKKCAVKVMKA
>NZ_CP038443.1|WP_171274116.1|4467718_4468021_-|chaperone-NapD
MKQGMSKLENNHMTREEFHVSSLVVLTQPPLRHRLAEQISALDGAEIHAVSDEGKLVVTLEGPSQRPIMDAIDAINAMPGVLSAALIYHQFDEVEAEGRE
>NZ_CP038443.1|WP_171269543.1|4468017_4468527_-|ferredoxin-type-protein-NapF
MPDGINLSRRSLFRGRLSAPRPEVQLPWSVSWADFVADCTRCGDCLTACPEQILIKGDGGFPTVDFQRGECTFCGECVSACQVPVFRPTTQTPWDYVAHIEAGCLASAQVFCQRCQDSCEQQAIRFSPQLGRVPTPSIHTESCNGCGACVADCPVGSIRVGALHEGSAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP013125	Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence	118011-118039	6	0.793
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NC_022001	Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence	37669-37697	7	0.759
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	557663-557691	7	0.759
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP051473	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10DE, complete sequence	20018-20046	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP051473	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10DE, complete sequence	73754-73782	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP012967	Rhodobacter sphaeroides strain MBTLJ-8 plasmid unnamed	14967-14995	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP030276	Rhodobacter sphaeroides 2.4.1 plasmid pDE, complete sequence	20016-20044	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP030276	Rhodobacter sphaeroides 2.4.1 plasmid pDE, complete sequence	73762-73790	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP015289	Rhodobacter sphaeroides strain MBTLJ-20 plasmid a, complete sequence	7928-7956	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP015289	Rhodobacter sphaeroides strain MBTLJ-20 plasmid a, complete sequence	107137-107165	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP015212	Rhodobacter sphaeroides strain MBTLJ-13 plasmid a, complete sequence	19315-19343	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP015212	Rhodobacter sphaeroides strain MBTLJ-13 plasmid a, complete sequence	73065-73093	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	CP047036	Rhodobacter sphaeroides strain DSM 158 plasmid pDx, complete sequence	1982-2010	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NZ_CP047042	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pDx, complete sequence	1979-2007	8	0.724
NZ_CP038443_2	2.1\|786601\|29\|NZ_CP038443\|CRISPRCasFinder	786601-786629	29	NC_003064	Agrobacterium fabrum str. C58 plasmid At, complete sequence	224477-224505	8	0.724

1. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP013125 (Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence) position: , mismatch: 6, identity: 0.793

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
cgaggcccgtaccttccgcgagcaggacc	Protospacer
*.  ********* ************ *.

2. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NC_022001 (Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence) position: , mismatch: 7, identity: 0.759

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
caccgcccgtgccatccgcgaaaccatcg	Protospacer
**********.**********.   .**

3. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 7, identity: 0.759

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
actcgcccgcagcatccgcgagcagggcg	Protospacer
  .******.* ************** *

4. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP051473 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10DE, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

5. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP051473 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10DE, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

6. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP012967 (Rhodobacter sphaeroides strain MBTLJ-8 plasmid unnamed) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

7. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP030276 (Rhodobacter sphaeroides 2.4.1 plasmid pDE, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

8. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP030276 (Rhodobacter sphaeroides 2.4.1 plasmid pDE, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

9. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP015289 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid a, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

10. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP015289 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid a, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

11. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP015212 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid a, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

12. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP015212 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid a, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

13. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to CP047036 (Rhodobacter sphaeroides strain DSM 158 plasmid pDx, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

14. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NZ_CP047042 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pDx, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
tgtcgcccggagcatccgcgagcaggaag	Protospacer
...****** * **************

15. spacer 2.1|786601|29|NZ_CP038443|CRISPRCasFinder matches to NC_003064 (Agrobacterium fabrum str. C58 plasmid At, complete sequence) position: , mismatch: 8, identity: 0.724

caccgcccgtaccatccgcgagcaggtct	CRISPR spacer
agccgcccttaccatccgcgcgcagcagc	Protospacer
 .****** *********** ****   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

713197 : 805633

102

Aeromonas_virus(21.28%)

lysis,transposase,integrase,tRNA,protease,terminase,tail,holin,capsid,head,portal,plate

attL 755449:755503|attR 788781:788835

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171272664.1\|713197_714028_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_041206420.1\|714105_714525_-	DUF4426 domain-containing protein	NA	NA	NA	NA
WP_043128939.1\|714529_714838_-	YggU family protein	NA	NA	NA	NA
WP_025325667.1\|714837_715389_-	YggT family protein	NA	NA	NA	NA
WP_043128937.1\|715412_716240_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_171272665.1\|716398_717100_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_041206426.1\|717139_718174_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_042649788.1\|718200_719310_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_171272666.1\|719342_720116_+	peroxide stress protein YaaA	NA	NA	NA	NA
WP_005332263.1\|720307_721531_-	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.5e-45	28.8
WP_171272667.1\|721659_722370_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_041207086.1\|722561_723869_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_005332255.1\|724189_724651_-	chemotaxis protein CheX	NA	NA	NA	NA
WP_041206428.1\|724640_725099_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_171272668.1\|725235_726222_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_005332250.1\|726224_726374_+	hypothetical protein	NA	NA	NA	NA
WP_005332247.1\|726449_726875_-	hypothetical protein	NA	NA	NA	NA
WP_005305063.1\|726988_727261_-	DNA-binding protein HU-alpha	A0A249Y2G7	Serratia_phage	3.6e-11	44.2
WP_043128929.1\|727599_728082_+	Rsd/AlgQ family anti-sigma factor	NA	NA	NA	NA
WP_041207087.1\|728184_728568_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_043128928.1\|728625_729990_-	DNA repair protein RadA	NA	NA	NA	NA
WP_005332239.1\|730090_732457_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_171272669.1\|732516_733422_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_171272670.1\|733450_734455_-	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_041207088.1\|734581_735220_+\|transposase	transposase	NA	NA	NA	NA
WP_171272671.1\|735771_737406_+	DUF3300 domain-containing protein	NA	NA	NA	NA
WP_081805783.1\|737405_738347_+	DUF2950 domain-containing protein	NA	NA	NA	NA
WP_005332225.1\|738700_739414_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_005332223.1\|739491_740700_-	phosphopentomutase	NA	NA	NA	NA
WP_171272672.1\|740714_742046_-	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	1.2e-78	40.5
WP_171272673.1\|742118_742892_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_005332215.1\|743282_743453_-	DUF1427 family protein	R4TMJ4	Halovirus	6.3e-06	60.0
WP_042649780.1\|743576_744851_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_171272674.1\|745060_745852_-	TatD family hydrolase	NA	NA	NA	NA
WP_171272675.1\|745892_746507_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_171274281.1\|746731_747097_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171272676.1\|747215_748181_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_171272677.1\|748422_749775_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	2.9e-93	42.2
WP_171272678.1\|750008_751436_-	ammonium transporter	NA	NA	NA	NA
WP_001310555.1\|752917_753934_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_171272679.1\|753943_754270_-	hypothetical protein	NA	NA	NA	NA
WP_171272680.1\|754326_755337_-\|integrase	site-specific integrase	H2BDD9	Pseudomonas_virus	2.4e-20	29.0
755449:755503	attL	NA	NA	NA	NA
WP_171272681.1\|755572_756625_-\|integrase	site-specific integrase	A5X9F3	Aeromonas_virus	4.8e-160	80.0
WP_171272682.1\|756621_757293_-	hypothetical protein	NA	NA	NA	NA
WP_171272683.1\|757311_757929_-	hypothetical protein	NA	NA	NA	NA
WP_171272684.1\|758003_758693_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	9.7e-37	41.8
WP_171272685.1\|758807_759104_+	hypothetical protein	NA	NA	NA	NA
WP_171272686.1\|759109_759397_+	hypothetical protein	NA	NA	NA	NA
WP_171272687.1\|759425_759941_+	phage regulatory CII family protein	A5X9F7	Aeromonas_virus	1.7e-22	39.5
WP_171272688.1\|759949_760297_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_171272689.1\|760321_760780_+	hypothetical protein	A5X9F8	Aeromonas_virus	5.4e-68	84.2
WP_171272690.1\|760841_761018_+	hypothetical protein	NA	NA	NA	NA
WP_171272691.1\|761020_761194_+	hypothetical protein	A5X9F9	Aeromonas_virus	3.2e-21	87.7
WP_171272692.1\|761190_761388_+	hypothetical protein	A5X9G0	Aeromonas_virus	4.1e-09	55.4
WP_163147954.1\|761384_761594_+	hypothetical protein	A5X9G1	Aeromonas_virus	3.6e-27	94.2
WP_171272693.1\|761590_762007_+	hypothetical protein	NA	NA	NA	NA
WP_171272694.1\|762003_762432_+	hypothetical protein	NA	NA	NA	NA
WP_171272695.1\|762428_762743_+	hypothetical protein	A5X9G2	Aeromonas_virus	2.0e-50	92.3
WP_171272696.1\|762739_762997_+	hypothetical protein	A5X9G3	Aeromonas_virus	2.4e-33	85.9
WP_171272697.1\|762993_765336_+	replication endonuclease	A5X9G4	Aeromonas_virus	0.0e+00	87.3
WP_171272698.1\|765338_765830_+	hypothetical protein	A5X9G5	Aeromonas_virus	9.8e-76	87.8
WP_171272699.1\|765832_766435_+	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	4.6e-43	47.6
WP_171272700.1\|766646_766979_+	hypothetical protein	NA	NA	NA	NA
WP_171272701.1\|767430_768492_-\|portal	phage portal protein	A0A077K9Q8	Ralstonia_phage	6.6e-117	60.4
WP_171272702.1\|768488_770258_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	1.4e-241	70.6
WP_171272703.1\|770407_771238_+\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	2.6e-52	45.6
WP_171272704.1\|771250_772303_+\|capsid	phage major capsid protein, P2 family	A4JWU7	Burkholderia_virus	2.7e-107	57.6
WP_171272705.1\|772313_773099_+\|terminase	terminase	A4PE31	Ralstonia_virus	3.5e-43	47.2
WP_171272706.1\|773205_773676_+\|head	head completion/stabilization protein	A0A1S5NNA6	Burkholderia_phage	1.7e-29	48.1
WP_048209105.1\|773675_773879_+\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	5.2e-15	57.6
WP_171274282.1\|773881_774112_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_171272707.1\|774127_774517_+	hypothetical protein	E5E3R9	Burkholderia_phage	2.1e-12	43.1
WP_171272708.1\|774503_774827_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_171272709.1\|774823_775645_+	DUF3380 domain-containing protein	A0A2H4JGJ9	uncultured_Caudovirales_phage	5.7e-68	51.1
WP_171272710.1\|775634_776108_+\|lysis	phage lysis regulatory protein LysB	E5FFH9	Burkholderia_phage	3.2e-07	36.4
WP_048209095.1\|776218_776695_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	9.0e-34	45.3
WP_171272711.1\|776670_777309_+	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	2.3e-16	34.7
WP_171272712.1\|777387_777939_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	1.7e-23	40.6
WP_171272713.1\|777935_778307_+	GPW/gp25 family protein	O80315	Escherichia_phage	1.8e-21	51.5
WP_171272714.1\|778303_779203_+\|plate	baseplate J/gp47 family protein	Q9ZXK8	Pseudomonas_virus	7.6e-90	59.3
WP_171272715.1\|779199_779832_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	7.7e-65	59.5
WP_171272716.1\|779828_781244_+\|tail	phage tail protein	A4PE45	Ralstonia_virus	1.7e-80	51.2
WP_171272717.1\|781243_781852_+\|tail	tail fiber assembly protein	H9C0Y3	Aeromonas_phage	4.8e-48	46.3
WP_171272718.1\|782032_783211_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.8e-134	61.8
WP_171272719.1\|783220_783739_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.0e-51	59.3
WP_025327469.1\|783819_784104_+\|tail	phage tail assembly protein	E5FFG6	Burkholderia_phage	1.4e-10	45.3
WP_171272720.1\|784112_784244_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_171272721.1\|784240_786868_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	2.7e-156	42.8
WP_171272722.1\|786880_787375_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.9e-32	57.1
WP_171272723.1\|787410_788523_+	phage late control D family protein	A0A1S5NV58	Burkholderia_phage	5.5e-98	55.1
WP_005332441.1\|789009_789528_+	RDD family protein	NA	NA	NA	NA
788781:788835	attR	NA	NA	NA	NA
WP_041206454.1\|789611_790682_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_005332438.1\|790707_791820_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_041206455.1\|791992_793504_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.4e-48	37.6
WP_041206456.1\|793660_794116_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_171272724.1\|794181_797034_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	8.1e-138	36.4
WP_043128915.1\|797276_798569_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_005332433.1\|798587_799253_+	DedA family protein	NA	NA	NA	NA
WP_171272725.1\|799389_800217_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_005315760.1\|801462_801651_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	5.0e-12	66.7
WP_005332431.1\|801744_802992_-	aspartate kinase	NA	NA	NA	NA
WP_171272726.1\|803008_805633_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.3e-75	37.7

DBSCAN-SWA_2

2032148 : 2041358

uncultured_Mediterranean_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005332743.1\|2032148_2032766_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.4e-34	46.4
WP_041205044.1\|2032762_2033344_+	DedA family protein	NA	NA	NA	NA
WP_041205045.1\|2033353_2034418_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7NU10	Lactobacillus_phage	4.9e-11	36.2
WP_005331913.1\|2034464_2035448_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.9e-34	33.7
WP_005331910.1\|2035535_2036549_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.1e-108	58.6
WP_005309452.1\|2036728_2036944_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_005331908.1\|2036959_2037403_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.0e-27	48.6
WP_005331907.1\|2037491_2039279_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.0e-74	41.4
WP_081805626.1\|2039492_2041358_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6

DBSCAN-SWA_3

2064000 : 2119623

uncultured_Caudovirales_phage(23.08%)

transposase,integrase,tRNA

attL 2080384:2080401|attR 2117032:2117049

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099992639.1\|2064000_2065017_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_019706001.1\|2065269_2066217_+\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7
WP_005329005.1\|2069036_2069885_-	TIGR03899 family protein	NA	NA	NA	NA
WP_041205057.1\|2070031_2070508_-	DUF3299 domain-containing protein	NA	NA	NA	NA
WP_171273246.1\|2070543_2071791_-	ABC transporter permease	NA	NA	NA	NA
WP_171273247.1\|2071870_2072557_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.6e-23	37.8
WP_171273248.1\|2072561_2073137_-	DUF2796 domain-containing protein	NA	NA	NA	NA
WP_171273249.1\|2073172_2073463_-	hypothetical protein	NA	NA	NA	NA
WP_005329017.1\|2073506_2074049_-	YtfJ family protein	NA	NA	NA	NA
WP_041205060.1\|2074268_2075147_-	hypothetical protein	NA	NA	NA	NA
WP_171268588.1\|2075270_2075621_+	hypothetical protein	NA	NA	NA	NA
WP_005329022.1\|2075647_2076178_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	4.6e-55	60.2
WP_171273250.1\|2076413_2077778_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_171273251.1\|2077774_2078386_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_042648901.1\|2078460_2079075_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_041205063.1\|2079276_2079807_+	hypoxanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_005329031.1\|2079919_2080837_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-22	31.8
2080384:2080401	attL	NA	NA	NA	NA
WP_041205064.1\|2080833_2081607_+	ABC transporter permease	NA	NA	NA	NA
WP_171273252.1\|2081662_2082010_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_171273253.1\|2082030_2082885_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_171273254.1\|2082988_2083783_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_171273255.1\|2083801_2084299_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4W084	Pandoravirus	2.9e-14	38.2
WP_042648906.1\|2084309_2085782_-	polynucleotide adenylyltransferase PcnB	G3MAR3	Bacillus_virus	2.2e-25	36.7
WP_041206812.1\|2085925_2086828_-\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_005329052.1\|2086940_2087390_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_005327571.1\|2087515_2088253_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA
WP_005327573.1\|2088249_2088795_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_171273256.1\|2089031_2091479_+	ATP-dependent helicase HrpB	A0A0G2Y9F4	Acanthamoeba_polyphaga_mimivirus	2.9e-27	27.8
WP_005327576.1\|2091743_2094065_+	penicillin-binding protein 1B	NA	NA	NA	NA
WP_042650422.1\|2094107_2094518_+	VOC family protein	NA	NA	NA	NA
WP_042649474.1\|2094600_2094921_-	ligand-binding protein SH3	NA	NA	NA	NA
WP_042649475.1\|2094908_2095301_-	multidrug transporter	NA	NA	NA	NA
WP_042649476.1\|2095459_2096341_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_042649477.1\|2096404_2096920_-	DUF2937 family protein	NA	NA	NA	NA
WP_042649479.1\|2098091_2099012_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_042649483.1\|2099050_2099875_-	hypothetical protein	NA	NA	NA	NA
WP_042649480.1\|2100085_2101372_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_042649481.1\|2101594_2102989_+	H(+)/Cl(-) exchange transporter ClcA	NA	NA	NA	NA
WP_041205072.1\|2103076_2103769_+	hypothetical protein	NA	NA	NA	NA
WP_025328177.1\|2103858_2104209_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	6.7e-26	49.5
WP_171273257.1\|2110288_2110921_+	LysE family translocator	NA	NA	NA	NA
WP_171273258.1\|2111158_2112376_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	4.3e-104	50.1
WP_041205253.1\|2113187_2114525_+\|transposase	IS4-like element ISAeme15 family transposase	NA	NA	NA	NA
WP_171273259.1\|2114990_2116532_+\|transposase	IS21-like element ISAs29 family transposase	K4I413	Acidithiobacillus_phage	9.8e-130	47.4
WP_039272515.1\|2116546_2117302_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-58	50.6
2117032:2117049	attR	NA	NA	NA	NA
WP_171273260.1\|2117403_2117838_+	lecithin retinol acyltransferase family protein	NA	NA	NA	NA
WP_167562305.1\|2117826_2118171_-	helix-turn-helix domain-containing protein	A0A2H4J5G9	uncultured_Caudovirales_phage	9.8e-06	35.2
WP_171273010.1\|2118354_2119623_-\|transposase	IS4-like element ISAeme3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2665177 : 2690049

Bacillus_thuringiensis_phage(100.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041205253.1\|2665177_2666515_+\|transposase	IS4-like element ISAeme15 family transposase	NA	NA	NA	NA
WP_005331469.1\|2666558_2667143_-	superoxide dismutase [Fe]	Q56AR7	Bacillus_thuringiensis_phage	2.5e-41	43.6
WP_005331467.1\|2667431_2667776_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_171273444.1\|2667853_2669065_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_171273445.1\|2669275_2671261_+	hypothetical protein	NA	NA	NA	NA
WP_041205334.1\|2671257_2671581_+	hypothetical protein	NA	NA	NA	NA
WP_171273446.1\|2671744_2672383_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_171273447.1\|2672382_2673342_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171273448.1\|2673655_2675383_-	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA
WP_171273449.1\|2675577_2676270_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_171274337.1\|2679019_2679988_+	homoserine kinase	NA	NA	NA	NA
WP_171273450.1\|2679984_2681259_+	threonine synthase	NA	NA	NA	NA
WP_139751429.1\|2681364_2681790_+	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_171273451.1\|2681958_2682909_+\|transposase	transposase	NA	NA	NA	NA
WP_041204923.1\|2682958_2684101_-\|transposase	IS4-like element ISAs18 family transposase	NA	NA	NA	NA
WP_171273452.1\|2684687_2685014_-	hypothetical protein	NA	NA	NA	NA
WP_010676219.1\|2685110_2686208_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_171273453.1\|2686260_2686557_-	hypothetical protein	NA	NA	NA	NA
WP_171273454.1\|2686543_2686990_-	STAS-like domain-containing protein	NA	NA	NA	NA
WP_171273455.1\|2687003_2687609_-	hypothetical protein	NA	NA	NA	NA
WP_005342491.1\|2687705_2688656_-\|transposase	IS1595-like element ISKpn3 family transposase	NA	NA	NA	NA
WP_171273456.1\|2688726_2689245_-	hypothetical protein	NA	NA	NA	NA
WP_171273457.1\|2689533_2690049_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2934845 : 3008811

Bacillus_phage(20.0%)

transposase,integrase,tRNA

attL 2984492:2984548|attR 3018877:3018933

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171273566.1\|2934845_2935370_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_163149793.1\|2935575_2937813_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_106886380.1\|2937864_2939514_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_005328825.1\|2939621_2940440_+	phosphate ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.6e-14	27.8
WP_025327511.1\|2940530_2941241_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_041206040.1\|2941433_2942753_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_171273567.1\|2942773_2943316_+	hypothetical protein	NA	NA	NA	NA
WP_171273568.1\|2943600_2944503_+	homocysteine S-methyltransferase family protein	NA	NA	NA	NA
WP_171273569.1\|2944512_2945913_+	amino acid permease	NA	NA	NA	NA
WP_171273570.1\|2945984_2946824_-	sterol desaturase family protein	NA	NA	NA	NA
WP_171273571.1\|2947080_2947443_+	hypothetical protein	NA	NA	NA	NA
WP_171273572.1\|2947562_2948306_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-35	38.2
WP_163135109.1\|2949344_2950145_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_171273573.1\|2950625_2951753_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_171273574.1\|2951763_2953098_-	MFS transporter	NA	NA	NA	NA
WP_171273575.1\|2953119_2954640_-	signal transduction histidine-protein kinase/phosphatase UhpB	NA	NA	NA	NA
WP_171273576.1\|2954636_2955227_-	transcriptional regulator UhpA	NA	NA	NA	NA
WP_041206035.1\|2955429_2955825_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_171273577.1\|2956050_2956824_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_171273578.1\|2956868_2957552_-	hypothetical protein	NA	NA	NA	NA
WP_171273579.1\|2957602_2958970_-	alkaline phosphatase	NA	NA	NA	NA
WP_041206032.1\|2958993_2960385_-	alkaline phosphatase	NA	NA	NA	NA
WP_171273580.1\|2960711_2961662_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_171273581.1\|2961902_2963051_+	MFS transporter	NA	NA	NA	NA
WP_171273582.1\|2963211_2964108_-	histone deacetylase	A0A2K9KZC4	Tupanvirus	8.2e-12	26.1
WP_171273583.1\|2964180_2964840_-	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_171273584.1\|2964984_2967072_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	2.1e-42	27.3
WP_163153748.1\|2967457_2968519_+	porin	NA	NA	NA	NA
WP_171273585.1\|2968721_2969663_+	hypothetical protein	NA	NA	NA	NA
WP_005329100.1\|2969808_2970999_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_171273586.1\|2971159_2972665_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.1e-85	46.4
WP_171273587.1\|2972791_2973286_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_106886404.1\|2973279_2973798_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_171274352.1\|2973826_2976082_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_163150103.1\|2976463_2978233_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	5.5e-60	30.4
WP_171273588.1\|2978232_2979228_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_005331987.1\|2979381_2979582_+	Trm112 family protein	NA	NA	NA	NA
WP_171273589.1\|2979578_2980328_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_025327477.1\|2980538_2981183_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_025327475.1\|2983499_2984054_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
2984492:2984548	attL	NA	NA	NA	NA
WP_043128800.1\|2984912_2986118_+\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	1.7e-12	35.3
WP_042058838.1\|2986265_2986622_+	hypothetical protein	NA	NA	NA	NA
WP_025201450.1\|2986614_2986917_+	DUF1232 domain-containing protein	NA	NA	NA	NA
WP_050504253.1\|2987039_2987645_+	hypothetical protein	NA	NA	NA	NA
WP_043128796.1\|2987707_2988127_+	DUF2787 family protein	NA	NA	NA	NA
WP_171273590.1\|2988904_2990830_+	hypothetical protein	NA	NA	NA	NA
WP_171274353.1\|2990912_2993651_+	DEAD/DEAH box helicase family protein	A0A1B1IUI1	uncultured_Mediterranean_phage	5.8e-40	24.4
WP_171273591.1\|2993758_2996632_-	hypothetical protein	NA	NA	NA	NA
WP_171273592.1\|2996700_2997153_-	hypothetical protein	NA	NA	NA	NA
WP_125729348.1\|2997169_2997364_-	hypothetical protein	NA	NA	NA	NA
WP_171273593.1\|2997431_2998574_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_171273594.1\|2998666_2999686_-	hypothetical protein	NA	NA	NA	NA
WP_001809438.1\|2999854_3000886_+\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA
WP_001809438.1\|3002190_3003222_+\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA
WP_001809438.1\|3004526_3005558_+\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA
WP_171273595.1\|3005569_3007777_-	DEAD/DEAH box helicase family protein	A7WKH8	Acidianus_filamentous_virus	3.2e-09	24.9
WP_099368881.1\|3007794_3008811_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	2.2e-186	99.4
3018877:3018933	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3315510 : 3368788

Pseudomonas_phage(20.0%)

transposase,integrase

attL 3309055:3309114|attR 3391439:3391529

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3309055:3309114	attL	NA	NA	NA	NA
WP_099369130.1\|3315510_3317859_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_171273732.1\|3317843_3321152_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010674971.1\|3321642_3321843_-	helix-turn-helix transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	1.5e-06	36.9
WP_021140683.1\|3321974_3322184_+	hypothetical protein	NA	NA	NA	NA
WP_010674969.1\|3322199_3323444_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	4.9e-39	29.1
WP_104453295.1\|3323565_3324318_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_158512853.1\|3324373_3324541_-	hypothetical protein	NA	NA	NA	NA
WP_102948393.1\|3325332_3326536_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.5e-114	70.1
WP_024941327.1\|3330054_3330699_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024941328.1\|3330698_3331136_+	CsgE	NA	NA	NA	NA
WP_024941329.1\|3331147_3331546_+	curli production assembly protein CsgF	NA	NA	NA	NA
WP_171273733.1\|3331553_3332408_+	curli production assembly/transport protein CsgG	M1ICK2	Pelagibacter_phage	8.6e-43	39.6
WP_005895593.1\|3332673_3333195_+	hypothetical protein	NA	NA	NA	NA
WP_024941331.1\|3333229_3334804_+	curlin	NA	NA	NA	NA
WP_171273734.1\|3334983_3335181_+	hypothetical protein	NA	NA	NA	NA
WP_064338153.1\|3338969_3339467_+	hypothetical protein	NA	NA	NA	NA
WP_171273735.1\|3339466_3340255_+	OmpA family protein	NA	NA	NA	NA
WP_005327394.1\|3341112_3342036_-	WYL domain-containing protein	NA	NA	NA	NA
WP_041205619.1\|3342136_3342427_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_001274811.1\|3342896_3344438_+\|transposase	IS21-like element ISAs29 family transposase	K4I413	Acidithiobacillus_phage	4.4e-130	47.6
WP_000194037.1\|3344452_3345208_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.4e-59	51.5
WP_041206914.1\|3345428_3345689_+	ADP-ribosylglycohydrolase	NA	NA	NA	NA
WP_059169687.1\|3345805_3346018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042011229.1\|3346141_3346351_+	hypothetical protein	NA	NA	NA	NA
WP_171273736.1\|3346362_3347601_+	DUF3596 domain-containing protein	A0A1W6JTA0	Pseudomonas_phage	3.9e-36	29.5
WP_069785115.1\|3347584_3348475_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_081100795.1\|3348409_3348748_-	single-stranded DNA-binding protein	A0A067ZIP0	Vibrio_phage	4.9e-26	50.9
WP_103859356.1\|3348999_3350259_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.3e-121	53.7
WP_171274362.1\|3350289_3350682_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	3.1e-24	48.7
WP_139127925.1\|3351218_3351443_+	hypothetical protein	NA	NA	NA	NA
WP_171274363.1\|3353301_3353688_+	hypothetical protein	NA	NA	NA	NA
WP_042011562.1\|3353841_3354441_+	DUF1819 family protein	NA	NA	NA	NA
WP_171273737.1\|3355158_3358854_+	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_160837715.1\|3358928_3360173_+	AAA family ATPase	NA	NA	NA	NA
WP_160837713.1\|3360175_3360937_+	hypothetical protein	NA	NA	NA	NA
WP_160837711.1\|3360987_3362958_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_160837709.1\|3362997_3363474_+	hypothetical protein	NA	NA	NA	NA
WP_160837707.1\|3363544_3364033_+	TIR domain-containing protein	NA	NA	NA	NA
WP_171273738.1\|3364067_3365855_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_171273739.1\|3366010_3366721_+	DUF3944 domain-containing protein	NA	NA	NA	NA
WP_171273740.1\|3366745_3367726_+	hypothetical protein	NA	NA	NA	NA
WP_171274364.1\|3368266_3368788_-\|transposase	IS630 family transposase	NA	NA	NA	NA
3391439:3391529	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3530450 : 3559261

Vibrio_phage(30.0%)

transposase,protease,tail,terminase,capsid,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012564931.1\|3530450_3531398_+\|transposase	IS30-like element ISAeca1 family transposase	Q9MBM9	Staphylococcus_prophage	1.0e-44	36.9
WP_005342491.1\|3531570_3532521_-\|transposase	IS1595-like element ISKpn3 family transposase	NA	NA	NA	NA
WP_171273776.1\|3532577_3536030_-	DUF1983 domain-containing protein	A0A2I7RWK4	Vibrio_phage	1.6e-07	38.2
WP_171273777.1\|3536100_3536490_-	hypothetical protein	NA	NA	NA	NA
WP_171273778.1\|3536474_3537008_-	hypothetical protein	NA	NA	NA	NA
WP_171273779.1\|3537004_3537553_-	hypothetical protein	NA	NA	NA	NA
WP_010676219.1\|3537518_3538616_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_171273780.1\|3539107_3540001_-	hypothetical protein	NA	NA	NA	NA
WP_171273781.1\|3540271_3540742_-	hypothetical protein	NA	NA	NA	NA
WP_171273782.1\|3540922_3541672_-	hypothetical protein	NA	NA	NA	NA
WP_171273783.1\|3542304_3542871_-	hypothetical protein	NA	NA	NA	NA
WP_171273784.1\|3543868_3544675_+	phage antirepressor KilAC domain-containing protein	X2KQ88	Campylobacter_phage	6.3e-19	30.5
WP_171269473.1\|3544787_3546002_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	8.7e-49	49.5
WP_005325174.1\|3546311_3546614_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_041205730.1\|3546613_3546979_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_005325170.1\|3547027_3548644_+\|transposase	IS66-like element ISAeme5 family transposase	A0A218MNE7	uncultured_virus	4.7e-42	32.8
WP_171273785.1\|3548660_3548810_-	hypothetical protein	NA	NA	NA	NA
WP_171273786.1\|3548898_3549507_-\|head,protease	HK97 family phage prohead protease	A0A2I7S7P2	Vibrio_phage	4.7e-27	47.2
WP_171273787.1\|3549499_3550702_-\|portal	phage portal protein	Q7Y5L0	Xanthomonas_virus	8.2e-15	23.4
WP_171273788.1\|3550757_3551504_-	hypothetical protein	NA	NA	NA	NA
WP_005342491.1\|3551633_3552584_+\|transposase	IS1595-like element ISKpn3 family transposase	NA	NA	NA	NA
WP_171273789.1\|3552492_3553578_-	hypothetical protein	M4MBI0	Vibrio_phage	3.6e-46	32.1
WP_171273790.1\|3553577_3553988_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_171273791.1\|3553965_3554265_-	hypothetical protein	NA	NA	NA	NA
WP_171273792.1\|3555398_3555887_-	glycoside hydrolase family protein	A0A219YC19	Aeromonas_phage	1.5e-39	55.8
WP_171273793.1\|3555946_3556342_+	hypothetical protein	NA	NA	NA	NA
WP_171273794.1\|3556381_3557302_+\|capsid	phage major capsid protein	A0A141GEW2	Brucella_phage	6.1e-10	25.6
WP_171273795.1\|3557489_3558032_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_021141311.1\|3558124_3559261_-\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

3627814 : 3699814

Salmonella_phage(21.05%)

transposase,integrase,tRNA

attL 3674882:3674912|attR 3700010:3700040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171273010.1\|3627814_3629083_+\|transposase	IS4-like element ISAeme3 family transposase	NA	NA	NA	NA
WP_081805875.1\|3630145_3631822_+	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	9.6e-38	25.1
WP_041205740.1\|3631922_3633035_+	ribonuclease D	NA	NA	NA	NA
WP_042650173.1\|3633253_3633622_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_042650172.1\|3633703_3634669_-	DMT family transporter	NA	NA	NA	NA
WP_171268965.1\|3634744_3635572_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_042650170.1\|3635628_3636573_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_042650169.1\|3636750_3637128_+	YbaN family protein	NA	NA	NA	NA
WP_042650168.1\|3637260_3637806_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.4e-29	40.9
WP_011706069.1\|3640628_3640958_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_043131365.1\|3641484_3642111_-	hydrolase	NA	NA	NA	NA
WP_042648682.1\|3642274_3643141_-	pirin family protein	NA	NA	NA	NA
WP_005330645.1\|3644211_3645534_-	YjiH family protein	NA	NA	NA	NA
WP_171268967.1\|3645981_3647052_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_005325086.1\|3647134_3647557_+	CBS domain-containing protein	NA	NA	NA	NA
WP_042650065.1\|3647733_3651660_+	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	1.8e-55	27.6
WP_041205747.1\|3651758_3652601_+	hypothetical protein	NA	NA	NA	NA
WP_041205748.1\|3652764_3653052_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_042650066.1\|3654906_3655923_+	response regulator	W8CYM9	Bacillus_phage	3.2e-12	33.9
WP_042650067.1\|3655898_3656543_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_005328332.1\|3656536_3657667_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_041205752.1\|3657719_3658757_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_005328336.1\|3659085_3659730_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_005328337.1\|3660143_3661337_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_041205051.1\|3661607_3662945_+\|transposase	IS4-like element ISAeme15 family transposase	NA	NA	NA	NA
WP_042650068.1\|3662992_3664423_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.5e-19	33.3
WP_005328342.1\|3664506_3664779_+	acylphosphatase	NA	NA	NA	NA
WP_139751574.1\|3664798_3665542_+	CHAD domain-containing protein	NA	NA	NA	NA
WP_042650070.1\|3665609_3667643_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	2.9e-44	26.5
WP_005328348.1\|3667828_3668911_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_041205758.1\|3669019_3669664_+	uridine kinase	A0A1V0SAA3	Catovirus	3.0e-32	38.0
WP_005328350.1\|3669727_3670309_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	9.1e-28	39.5
WP_041205760.1\|3670657_3672130_+	inorganic phosphate transporter	NA	NA	NA	NA
WP_041206683.1\|3672437_3673979_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.2e-128	47.2
3674882:3674912	attL	NA	NA	NA	NA
WP_001138014.1\|3674907_3677874_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001161490.1\|3677877_3678438_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_000845048.1\|3678774_3679788_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_024167031.1\|3679991_3680228_+	trimethoprim-resistant dihydrofolate reductase DfrB4	A0A0H5ARK7	Pseudomonas_phage	2.8e-12	66.0
WP_000186237.1\|3680366_3680999_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_045898630.1\|3681157_3682003_+	AadA family aminoglycoside 3''-O-nucleotidyltransferase	NA	NA	NA	NA
WP_000679427.1\|3682018_3682366_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|3682359_3683199_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000376623.1\|3683326_3683827_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|3684333_3685098_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_011191339.1\|3685389_3685959_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.4e-41	51.6
WP_171273815.1\|3686154_3687678_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_171273816.1\|3687754_3688111_-	hypothetical protein	NA	NA	NA	NA
WP_171273817.1\|3688167_3688359_-	hypothetical protein	NA	NA	NA	NA
WP_017411290.1\|3688758_3689976_-	tetracycline efflux MFS transporter Tet(E)	NA	NA	NA	NA
WP_088813956.1\|3691319_3693131_+	hypothetical protein	NA	NA	NA	NA
WP_033991895.1\|3693107_3696074_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	98.8
WP_033943780.1\|3696077_3696638_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.9e-59	99.2
WP_171269473.1\|3698599_3699814_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	8.7e-49	49.5
3700010:3700040	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3872676 : 3932438

Bacillus_phage(18.18%)

transposase,integrase

attL 3899762:3899821|attR 3932493:3932610

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019706001.1\|3872676_3873624_+\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7
WP_171273876.1\|3873589_3874102_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	3.6e-12	41.2
WP_010676219.1\|3874150_3875248_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_171273877.1\|3875300_3875702_-	hypothetical protein	NA	NA	NA	NA
WP_171273878.1\|3876209_3878246_-	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA
WP_171273879.1\|3878477_3879488_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171273880.1\|3879467_3880391_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171273881.1\|3880515_3881274_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_171273882.1\|3882958_3883861_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171273883.1\|3883995_3885570_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	3.9e-17	34.5
WP_171274374.1\|3885582_3886686_-	hypothetical protein	NA	NA	NA	NA
WP_171273884.1\|3886973_3889271_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_171273885.1\|3889254_3890040_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_171274375.1\|3890200_3891079_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171273886.1\|3891142_3891994_-	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
WP_171273887.1\|3892125_3893040_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021141311.1\|3893361_3894498_+\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_171273888.1\|3894855_3895815_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_171273889.1\|3895904_3897413_+	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.6e-10	21.7
WP_171273890.1\|3897414_3898437_+	ABC transporter permease	NA	NA	NA	NA
3899762:3899821	attL	NA	NA	NA	NA
WP_171273891.1\|3900146_3900383_-	hypothetical protein	NA	NA	NA	NA
WP_171273892.1\|3900366_3900708_-	DUF1232 domain-containing protein	A0A2I7S9Z5	Vibrio_phage	1.1e-06	31.3
WP_171273893.1\|3902414_3902960_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.2e-31	47.5
WP_010791757.1\|3903153_3904836_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_000393453.1\|3904838_3905747_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_000801210.1\|3905743_3906961_+	TniQ family protein	NA	NA	NA	NA
WP_000904941.1\|3907021_3907636_+	recombinase family protein	A0A0C4UR34	Shigella_phage	1.3e-37	51.9
WP_001087809.1\|3907688_3907925_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_003465059.1\|3907921_3908287_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000136268.1\|3908303_3909950_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-39	28.3
WP_000654684.1\|3909946_3910192_-	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_000735441.1\|3910194_3910470_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_032454987.1\|3910485_3910836_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000429838.1\|3910907_3911342_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000259031.1\|3911823_3912663_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|3912656_3913004_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206316.1\|3913167_3913959_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000845048.1\|3914104_3915118_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_171273894.1\|3915515_3915659_-	hypothetical protein	NA	NA	NA	NA
WP_163148202.1\|3915655_3915796_-	hypothetical protein	NA	NA	NA	NA
WP_171273895.1\|3915801_3916170_-	DUF2787 family protein	NA	NA	NA	NA
WP_171273896.1\|3916166_3916616_-	DNA repair protein RadC	NA	NA	NA	NA
WP_171273897.1\|3917001_3917379_+	hypothetical protein	NA	NA	NA	NA
WP_171273898.1\|3917544_3917721_-	hypothetical protein	NA	NA	NA	NA
WP_171273899.1\|3917787_3920964_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_171273900.1\|3920960_3921410_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_171273901.1\|3921418_3921826_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_171273902.1\|3921908_3922373_-	hypothetical protein	NA	NA	NA	NA
WP_171273903.1\|3922372_3923329_-	DUF91 domain-containing protein	NA	NA	NA	NA
WP_171273904.1\|3923325_3924657_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_171273905.1\|3925909_3927868_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	1.2e-31	26.2
WP_171273906.1\|3928457_3931097_+	toprim domain-containing protein	A0A1B2AQ05	Phage_Wrath	5.3e-67	32.4
WP_171273907.1\|3931319_3932438_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3932493:3932610	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4177713 : 4254540

Escherichia_phage(25.0%)

transposase,integrase

attL 4164386:4164405|attR 4201450:4201469

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4164386:4164405	attL	NA	NA	NA	NA
WP_171274013.1\|4177713_4178730_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	2.4e-185	98.8
WP_148304730.1\|4178790_4179732_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005327430.1\|4183155_4184592_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_005327429.1\|4184585_4185512_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_005327427.1\|4185508_4186309_+	transglutaminase family protein	NA	NA	NA	NA
WP_005327426.1\|4186325_4187027_+	peptidase	NA	NA	NA	NA
WP_041205479.1\|4187109_4187595_+	YqhA family protein	NA	NA	NA	NA
WP_171274014.1\|4187718_4188168_+	hypothetical protein	NA	NA	NA	NA
WP_041205476.1\|4188172_4191142_+	hypothetical protein	NA	NA	NA	NA
WP_005327419.1\|4191141_4191966_+	FTR1 family protein	NA	NA	NA	NA
WP_005327418.1\|4192051_4193476_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005327416.1\|4194282_4195542_+	hypothetical protein	NA	NA	NA	NA
WP_005327415.1\|4195629_4197276_+	hypothetical protein	NA	NA	NA	NA
WP_005327414.1\|4197392_4198595_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	1.2e-21	25.4
WP_041205474.1\|4198675_4199242_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_171274015.1\|4199271_4200699_-	sodium:proton antiporter NhaD	NA	NA	NA	NA
WP_005327410.1\|4200825_4201299_-	DUF4357 domain-containing protein	NA	NA	NA	NA
WP_005327408.1\|4201451_4202132_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-29	35.0
4201450:4201469	attR	NA	NA	NA	NA
WP_005327404.1\|4204569_4205643_+	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_171274016.1\|4205817_4206834_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	1.1e-185	98.8
WP_171274017.1\|4207041_4209834_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_041205467.1\|4209833_4210478_-	LUD domain-containing protein	NA	NA	NA	NA
WP_005327547.1\|4210479_4211916_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_081805666.1\|4211908_4212685_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_005327551.1\|4214529_4215435_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041205463.1\|4215473_4216283_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_005327555.1\|4216391_4216763_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_005327557.1\|4216768_4217305_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041206878.1\|4217316_4217652_+	DUF3802 family protein	NA	NA	NA	NA
WP_005327561.1\|4217918_4218551_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_041206877.1\|4218803_4220132_+	amino-acid N-acetyltransferase	NA	NA	NA	NA
WP_148304685.1\|4220305_4220485_-	hypothetical protein	NA	NA	NA	NA
WP_005327565.1\|4220549_4221902_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_041205459.1\|4222038_4223133_-	hypothetical protein	NA	NA	NA	NA
WP_161507314.1\|4223383_4225645_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_171274018.1\|4225844_4226855_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_005331601.1\|4227015_4227333_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_005331597.1\|4228589_4229882_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005331594.1\|4229956_4230496_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_005331593.1\|4230705_4232514_-	M3 family oligoendopeptidase	A0A1X9I5X5	Streptococcus_phage	1.6e-09	22.9
WP_171274019.1\|4234815_4235733_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_005331588.1\|4235943_4236546_+	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	7.2e-20	35.3
WP_171269622.1\|4236625_4237540_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.3e-33	33.7
WP_171274020.1\|4237640_4239443_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_171274021.1\|4239568_4240735_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SLN2	Escherichia_phage	6.7e-147	68.1
WP_041205445.1\|4240922_4241420_-	hypothetical protein	NA	NA	NA	NA
WP_041205443.1\|4241488_4242349_-	hypothetical protein	NA	NA	NA	NA
WP_041205440.1\|4242402_4243266_-	phosphotransferase	NA	NA	NA	NA
WP_041205438.1\|4243255_4243852_-	penicillin-binding protein activator LpoB	NA	NA	NA	NA
WP_041205436.1\|4243851_4244250_-	YcfL family protein	NA	NA	NA	NA
WP_005330108.1\|4244316_4245738_-	hypothetical protein	NA	NA	NA	NA
WP_005330109.1\|4245737_4246088_-	purine nucleoside phosphoramidase	NA	NA	NA	NA
WP_171269615.1\|4246345_4248358_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-20	42.7
WP_171274022.1\|4248433_4249309_-	6-carboxytetrahydropterin synthase	A0A140B3P3	Vibrio_phage	8.0e-12	24.1
WP_005330115.1\|4249388_4250732_+	dihydroorotase	NA	NA	NA	NA
WP_171274023.1\|4251166_4251637_+	hypothetical protein	NA	NA	NA	NA
WP_021141234.1\|4252851_4254078_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	O80301	Enterobacteria_phage	7.7e-154	78.6
WP_041205449.1\|4254135_4254540_+\|transposase	IS200/IS605-like element ISAs26 family transposase	A0A1S5RHE3	Helicobacter_phage	1.1e-29	54.8

DBSCAN-SWA_11

4627101 : 4652302

Aeromonas_phage(64.52%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171274194.1\|4627101_4627503_-	hypothetical protein	A0A1I9KG26	Aeromonas_phage	3.1e-43	83.8
WP_171274390.1\|4627648_4629826_-	hypothetical protein	W8FP98	Vibrio_phage	1.9e-38	28.9
WP_171274195.1\|4629854_4631423_-	TerL	A0A096XUU0	Cronobacter_phage	1.8e-75	35.7
WP_171274196.1\|4631412_4632000_-	hypothetical protein	NA	NA	NA	NA
WP_043144157.1\|4632126_4632309_-	hypothetical protein	A0A1I9KFC5	Aeromonas_phage	3.8e-09	58.2
WP_044303401.1\|4632305_4632530_-	hypothetical protein	A0A1I9KFG6	Aeromonas_phage	5.2e-24	73.0
WP_171274197.1\|4632537_4633086_-	hypothetical protein	A2I317	Vibrio_virus	1.5e-48	55.1
WP_158656263.1\|4633082_4633325_-	hypothetical protein	I3PUY0	Vibrio_phage	3.2e-11	48.6
WP_171274198.1\|4633794_4633989_-	DUF3283 family protein	NA	NA	NA	NA
WP_171274199.1\|4634083_4634695_-	hypothetical protein	NA	NA	NA	NA
WP_171274200.1\|4634691_4635114_-	hypothetical protein	A0A1I9KG18	Aeromonas_phage	1.3e-63	82.9
WP_171274201.1\|4635110_4635428_-	hypothetical protein	A0A1I9KFA7	Aeromonas_phage	4.6e-50	91.4
WP_171274202.1\|4635424_4635865_-	recombination protein NinB	A0A1I9KFA6	Aeromonas_phage	8.5e-71	90.3
WP_171274203.1\|4635861_4636470_-	Rha family transcriptional regulator	A0A2I6PG18	Plesiomonas_phage	3.1e-39	53.0
WP_171274204.1\|4636545_4636848_-	hypothetical protein	A0A1I9KFB1	Aeromonas_phage	1.2e-44	90.9
WP_111873656.1\|4636850_4637279_-	hypothetical protein	NA	NA	NA	NA
WP_005310225.1\|4637316_4638351_-	conserved phage C-terminal domain-containing protein	K7PLZ7	Enterobacterial_phage	4.1e-23	42.9
WP_171274205.1\|4638347_4639814_-	DNA cytosine methyltransferase	A0A1B0V7P0	Salmonella_phage	3.8e-123	48.4
WP_171274206.1\|4639810_4639975_-	hypothetical protein	A0A1I9KFA1	Aeromonas_phage	3.4e-17	77.4
WP_005310218.1\|4640028_4640247_-	hypothetical protein	A0A1I9KFG0	Aeromonas_phage	2.1e-30	97.2
WP_171274207.1\|4640251_4640641_-	hypothetical protein	A0A1I9KF96	Aeromonas_phage	2.8e-57	96.6
WP_171274208.1\|4640682_4641411_-	phage antirepressor KilAC domain-containing protein	A0A1I9KFA9	Aeromonas_phage	2.7e-106	84.3
WP_111873660.1\|4641444_4641660_-	hypothetical protein	NA	NA	NA	NA
WP_162625767.1\|4641754_4642393_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171274209.1\|4643058_4643304_+	hypothetical protein	A0A1I9KF98	Aeromonas_phage	3.1e-30	88.9
WP_171274210.1\|4643613_4643805_+	hypothetical protein	A0A1I9KG01	Aeromonas_phage	1.4e-17	82.3
WP_171274211.1\|4643807_4644173_+	hypothetical protein	A0A1I9KFC9	Aeromonas_phage	1.4e-50	83.5
WP_171274212.1\|4644169_4645069_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A1I9KFF5	Aeromonas_phage	1.4e-120	72.0
WP_171274213.1\|4645065_4646172_+	hypothetical protein	A0A2H4JAZ0	uncultured_Caudovirales_phage	1.3e-86	63.3
WP_171274214.1\|4646220_4647261_+	hypothetical protein	NA	NA	NA	NA
WP_171274215.1\|4647257_4647842_+	adenine methylase	A0A2I7QNI8	Vibrio_phage	6.9e-60	58.5
WP_171274216.1\|4647900_4648080_+	hypothetical protein	A0A1I9KFZ1	Aeromonas_phage	3.2e-24	91.5
WP_171274217.1\|4648100_4649039_+	recombination-associated protein RdgC	A0A1I9KFB4	Aeromonas_phage	6.5e-169	97.8
WP_171274218.1\|4649035_4649380_+	hypothetical protein	NA	NA	NA	NA
WP_171274219.1\|4649376_4650138_+	hypothetical protein	A0A1I9KFE6	Aeromonas_phage	1.4e-33	73.2
WP_171274220.1\|4650101_4650320_+	hypothetical protein	A0A1I9KF77	Aeromonas_phage	2.7e-33	95.8
WP_171274221.1\|4650604_4651408_+	phage antirepressor N-terminal domain-containing protein	A0A0H4IQ87	Shigella_phage	2.4e-39	62.3
WP_171274222.1\|4651674_4652112_+	hypothetical protein	A0A1I9KG69	Aeromonas_phage	2.7e-45	74.8
WP_042642185.1\|4652104_4652302_+	hypothetical protein	I6PBM8	Cronobacter_phage	3.3e-14	57.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP038443

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection