CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP038444	Aeromonas media strain T5-8 chromosome, complete genome	7 crisprs	WYL,cas14j,DEDDh,csa3,c2c9_V-U4,DinG,cas3	0	1	15	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP038444_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038444_1

742338-742460

Orphan

Consensus_repeat	Method
GTGGATGGCACGGGATAGTTCACGAGCAACATCATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038444_1

>merge|NZ_CP038444|1|742338-742460|CRISPRCasFinder
GTGGATGGCACGGGATAGTTCACGAGCAACATCATCAACAGTTCACCTTCGGATGGGTCAAGGAAACAGGGATTGAAAGGACCCGGGTGGATGGCACGGGATAGTTCACGAGCAACATCATCA

>NZ_CP038444|1|1|742338-742460|CRISPRCasFinder
GTGGATGGCACGGGATAGTTCACGAGCAACATCATCA	ACAGTTCACCTTCGGATGGGTCAAGGAAACAGGGATTGAAAGGACCCGG
GTGGATGGCACGGGATAGTTCACGAGCAACATCATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038444.1\|WP_005329052.1\|746513_746963_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP038444.1\|WP_005327571.1\|747088_747826_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP038444.1\|WP_005327573.1\|747822_748368_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NZ_CP038444.1\|WP_041206812.1\|745498_746401_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|274810
NZ_CP038444.1\|WP_042648900.1\|737174_737786_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312
NZ_CP038444.1\|WP_042648899.1\|735801_737178_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
NZ_CP038444.1\|WP_171268588.1\|734658_735009_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038444.1\|WP_042648903.1\|741431_742286_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP038444.1\|WP_005327576.1\|751316_753638_+\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NZ_CP038444.1\|WP_025328197.1\|741063_741411_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP038444.1\|WP_041205063.1\|738676_739207_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP038444.1\|WP_005329022.1\|735035_735566_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NZ_CP038444.1\|WP_005329042.1\|743374_743872_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP038444.1\|WP_042648906.1\|743882_745355_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_CP038444.1\|WP_042650421.1\|748604_751052_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950
NZ_CP038444.1\|WP_042648904.1\|742561_743356_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP038444.1\|WP_042648901.1\|737860_738475_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP038444.1\|WP_041205064.1\|740233_741007_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NZ_CP038444.1\|WP_042648902.1\|739319_740237_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP038444.1\|WP_042650422.1\|753680_754091_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319940

Protein	Function_ID	Function_description	E-value
NZ_CP038444.1\|WP_005329052.1\|746513_746963_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	2.61102e-75
NZ_CP038444.1\|WP_005327571.1\|747088_747826_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	5.31815e-133
NZ_CP038444.1\|WP_041206812.1\|745498_746401_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|274810	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. [Protein synthesis, tRNA and rRNA base modification].	1.32883e-152
NZ_CP038444.1\|WP_042648900.1\|737174_737786_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	4.175e-126
NZ_CP038444.1\|WP_042648899.1\|735801_737178_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP038444.1\|WP_005327573.1\|747822_748368_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	2.55626e-33
NZ_CP038444.1\|WP_042648903.1\|741431_742286_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	4.57638e-166
NZ_CP038444.1\|WP_005327576.1\|751316_753638_+\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP038444.1\|WP_025328197.1\|741063_741411_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.74902e-14
NZ_CP038444.1\|WP_041205063.1\|738676_739207_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	2.5991e-93
NZ_CP038444.1\|WP_005329022.1\|735035_735566_-\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	1.00447e-128
NZ_CP038444.1\|WP_005329042.1\|743374_743872_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	2.38791e-68
NZ_CP038444.1\|WP_042648906.1\|743882_745355_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	0
NZ_CP038444.1\|WP_042650421.1\|748604_751052_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0
NZ_CP038444.1\|WP_042648904.1\|742561_743356_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	7.7511e-164
NZ_CP038444.1\|WP_042648901.1\|737860_738475_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	8.11693e-11
NZ_CP038444.1\|WP_041205064.1\|740233_741007_+\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	1.68056e-172
NZ_CP038444.1\|WP_042648902.1\|739319_740237_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.42758e-101
NZ_CP038444.1\|WP_042650422.1\|753680_754091_+\|VOC-family-protein	gnl\|CDD\|319940	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins. uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.03234e-71

>NZ_CP038444.1|WP_042648903.1|741431_742286_-|pantoate--beta-alanine-ligase
MLVVNNPAALREQIGQWRRESRAIAFVPTMGNLHQGHLTLVDEARSHGEKVVVSIFVNPLQFDKAEDLANYPRTLEQDCAALEAAGVDLVFTPTPELMYPHGLASQTFVEVPGLSSLLEGALRPGHFRGVSTVVTKLFNLVQPDVACFGQKDYQQLALIRKMVADMAIPVEIVGVPTVRAEDGLALSSRNGYLTAAERALAPELARTMNWIAEQIEAGSHHLPSLVAQASQRLDNAGFRTDAIDIVDADTLESSSAASKRLVILMAAYLGKARLIDNRVVTLQG
>NZ_CP038444.1|WP_025328197.1|741063_741411_-|antibiotic-biosynthesis-monooxygenase
MSKKVYCIAQFLPKPGKEQALFQVLQGLEPNTLREDGCLQYRVTRHIASPFAEGESFPIVFNEIWQDMASFEAHCQRAEIKAFFERYCLAEDGLAAKWNVCVYSDEPADYDAPAL
>NZ_CP038444.1|WP_041205064.1|740233_741007_+|ABC-transporter-permease
MNPMTYYIAFKSILAKEVSRFTRIWIQTLVPPAITMSLYFVIFGNLIGSRIGEMGGFSYMEFIVPGLIMMSVITNSYSNVASSFYSAKFQRNVEELLVAPVPNYIIIAGYVGGGVARGLCVGLIVTLVSLFFVPLQIHHLFSVCFTVLLTSILFSLGGLINAVFAKSFDDISIIPTFILTPLTYLGGVFYSISLLPPFWQGVSQVNPIIYMVNAFRYGFLGISDVPLGTAYLIIIGFIVALYGLAWWLISRGTGLRH
>NZ_CP038444.1|WP_042648902.1|739319_740237_+|ABC-transporter-ATP-binding-protein
MNALEISGLKKTYQGGVEALKGIDLTVKQGDFFALLGPNGAGKSTTIGVISSLVNKSAGKVKVFGHDIDTDLELAKAQLGLVPQEFNFSMFEKVSQIVTHQAGFYGVPRAEAKVRAEKYLRQLDLWDKRDMAARTLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIEIRRSMWSFLKDLNEQGVTIILTTHYLEEAEMLCRNIGIIDKGRLIENTSMKSLLGKLGRETFLLDLVPGSAVPSLPEFNGRMQDEHTLEVELDKSQSLNSLFEQLSAQGVKVLSMRNKANRLEELFVNLVEEGRKA
>NZ_CP038444.1|WP_041205063.1|738676_739207_+|hypoxanthine-phosphoribosyltransferase
MKHNVEVMISEAEVAARIAKLGEEITARYQGSDEVVMIGLLRGSCVFLADLCRQCQLPITLDFMTASSYGSGMHSTRDVRILKDLDDDIKGKDVVIVEDIIDTGYTLNKVREILSLREPKSLAICTLLDKPSRREVQVPVDWIGFAIPDEFVVGCGIDYAQKYRNLPFIGKVVPQE
>NZ_CP038444.1|WP_042648901.1|737860_738475_-|TetR/AcrR-family-transcriptional-regulator
MEPRAEIRRRTRLSPEARRDQLMECAIEVFSRRGIGRAGHAEIAEQAKVSVATVFNYFNTREDLVDEVLTEIEGFVQQILEQAYNGQGSVRDSIHRHVKLFVDAAYDKPDHASIWLEWSSSVREEVWPRYTRLLDKALERIAPHLQAAMDSGEIQSVLSAQDLARSLTGFGYVMMQMINQPQRPSREEVTDFLFKYVTAPLQVA
>NZ_CP038444.1|WP_042648900.1|737174_737786_+|UbiX-family-flavin-prenyltransferase
MNKQITLALTGASGAPYALRLLQCLVQADYRVYLLASSAARVVLKTEQQQEWPGSPKELSAYLCRQYGAIDGQIVACGKEEWFSPVASGSAAPKQMVVCPCSMGTVSAIANGTSDNLLERAADVVIKERGQLILVPRESPFSAIHLENMLKLARLGVTIMPAAPGFYHEPKSIEDLVDFMVARILDHLGVEHELTRRWGYARH
>NZ_CP038444.1|WP_042648899.1|735801_737178_+|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MHIHILGICGTFMGGLAVLAKQLGYRVTGSDANVYPPMSTQLEQQGIELTEGYDPSQLDPAPDLVVIGNAMSRGNPCVEYVLDRNLPYISGPQWLLEHVLQDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFLIGGVPGNFPVSARLGSAPFFVIEADEYDCAFFDKRSKFVHYHPRTLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPQADDNLTAVRKMGCWSEVELVGQDDAKWKAVKLTDDGSAFEVWLDGVKQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKGEVAGISVYDDFAHHPTAIETTLGGLRARVDAVGGQARILAVLEPRSNTMKLGVHKEELAGCFDGADEVFFFQPANIGWDLGEVTAHMSRPAQVFDDLEILIGALVAESRSGDHILIMSNGGFGGIHDKLIARLKQGTS
>NZ_CP038444.1|WP_005329022.1|735035_735566_-|inorganic-diphosphatase
MSLNLVPAGKSLPDDIYVIIEIPQNADPIKYEVDKDSGAIFVDRFMSTPMFYPCNYGYVNATLSLDGDPVDVLVPTPYPLLAGSVIRCRPVGVLKMTDESGEDAKIVAVPHSKLTKQYDHIQDVNDLPELLKAQIQHFFERYKELEAGKWVKVEGWGDKAAAEAEILTSAERYAAK
>NZ_CP038444.1|WP_171268588.1|734658_735009_+|hypothetical-protein
MSEITMKPVSLFLLMLLSLPTLAGQVIVNQGMSTADTFALRDQLAREHEWQEWLRFQQAIKWLEVLPVNCDLVGGAGQEYRCGDNYYRPYRQNGRDLYIQGDPPGLSPQRPIKKAP
>NZ_CP038444.1|WP_042648904.1|742561_743356_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSKITITDLQKMKQDGQKITAITAYDATFAKLFDDEGAQVLLIGDSLGMVLQGGDDTLAVSMDEMVYHTRCVVRGASKALVVTDMPFMSYATPEQTYQNAARLMAAGARMVKMEGGDWLCESIRHLTRNGVPVCGHLGLTPQSVHVFGGFKVQGRDEFHAQEIYRQALELQAAGIQLLVLECVPVALAERISKALRIPVIGIGAGPATDGQILVMHDAFGITSGYVPKFTKNFLAETGDMRAAIRLYVQQVSEGTFPGPEHCFN
>NZ_CP038444.1|WP_005329042.1|743374_743872_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MIEVFVAIGSNLGNPVAQARQAVAALDRLPESALQQVSQLYGSRPMGPADQPDYVNAVVRLHTRLSPLALLDQLQKIEREQGRVRKDERWGPRTLDLDLLLYGEQVIQHERLIVPHYGMKEREFVLLPLAEIAPALVLPCGTPLTELVARCPRNGLEILADATGE
>NZ_CP038444.1|WP_042648906.1|743882_745355_-|polynucleotide-adenylyltransferase-PcnB
MKRCTIFSQIANFCRKVLGKEDGEQSIESPIPARVAGQRRTLSRDQHPISRKEISENALKVLYRLNKGGYEAYLVGGGVRDILLGKTPKDFDIATDATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGIEDLAERKLELIGDPETRYREDPVRMLRAVRFAAKLEMTISPRTAAPIRELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQPLFPQVAALFTPNGNSPYEQFIELALMDTDTRVREDKRVTPAFLYATLLWGAVEARARVLENESGLPWHDAFMLAINEVLDAQVRIIAVPRRFTTDVRDIWALQQRLTRRQGRHPERAMEHPKFRAAFDFLLLRNRVERGLGELASWWERYVASNPDVRPQLQREATRRPASGERAPAAEPRGDGEKRGSNSRNRRRPRRRKPKAAE
>NZ_CP038444.1|WP_041206812.1|745498_746401_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MAMTPSSPLRPHVGRFAPSPSGPLHFGSLVAALGSFLQARSQQGRWLVRIEDIDPPREMAGASELILQTLEAHGLGWDGEVMYQSRRHGRYDEIIEGLYRAGDLYWCRCTRREIMAAGGFYNGHCRTLGLTAEGCAARLRQHHPVYHFEDQLQGHIAVPAALAEEDFIVRRRDGLYAYNLAVVVDDMDSGITEIVRGADLLEPTVRQIALYQTLGADVPAWVHLPLAVLADGNKLSKQNHAPALAQDDVRPALWQALTFLGQCPPPCLRENTVDEIIAWGIAHWQLARVPRQQKIVLGAR
>NZ_CP038444.1|WP_005329052.1|746513_746963_-|RNA-polymerase-binding-protein-DksA
MPTGENRKSLGPLAIAGVEPYQVKAGEEYMNDQQKVHFRKILGAWRNQLMQEVDRTVDHMKDEAANFPDPVDRAAQEEEFALELRTRDRERKLIKKIEKTLLLLEEDDFGYCEHCGIEIGIRRLEARPTADLCVDCKTLAEIKEKQMAG
>NZ_CP038444.1|WP_005327571.1|747088_747826_-|DNA/RNA-nuclease-SfsA
MIFDPPLQSGLLIARYKRFLTDVQLDNDEVITLHCANTGAMTGCADPGTRVWYSTSSNPKRKLAHSWEIAQSPAGHFICVNTARANQIARELIEQGALAPLAGYARLRTEVKYGEENSRIDLLLEDEHRPNCYIEVKSVTLLDEREQPGMGYFPDAVTTRGAKHLRELMAMKAAGHRAVLLFMVLHSGIARVRPAAHIDPHYSQLVEQAITAGVEILCYRPHVGVQGMVAQDFIPFESGHLLPEG
>NZ_CP038444.1|WP_005327573.1|747822_748368_-|RNA-2',3'-cyclic-phosphodiesterase
MPRLFFALPLHQLAPALIDWRERRPWPGLPVPEHNLHLTLAFLGEADEATQASLIAAAGQQRCPPFSVHLDQTGWFARAKAAWVGPSEWPNELNVLARALRRHGEKLGLGNGEQGYRPHVTLSRKAAEAPEALPAPDFVLQADRFCLYRSVSTPDGVHYEPLACWPLRARAKATSSEELTS
>NZ_CP038444.1|WP_042650421.1|748604_751052_+|ATP-dependent-helicase-HrpB
MSQLPIVSVLPELFDAIDSHVSVILQAPPGAGKSTLLPLELVRRNRLPGRIIMLEPRRLAARNIASFLARQLGEKVGERIGLRVRGESRTSAATRLEIVTEGVLTRMLQQDPELAGVSLVIFDEFHERSLHADTALAFAIESQQGLRDDLRLLIMSATLDGMALEALLPGAPVIRSEGRGFPIDYHYRPANRQQWLEPQVGAVVLEALAAHAGSALVFLPGQGEIERLAQWLEGRLPDDVRLAPLYGRLDMAAQQAAIEPAPAGSRKLVLTTNVAETSLTIEGVSVVIDSGLERRATFDMRSGVTRLETRQIARASATQRAGRAGRLGPGVCYRLWSAEVQERLAEQSPPDILTQELTGLLLDAAQWGARVESLPLLDMPPSAAVASARRLLVALGAMKPEAEQQLTPAGRTMAAFGTHPRLARMLLRARELEAEGLTGIVADAAFLVALLEEDLRGSERLSVLFHRRQGALRQGAARWFERLGARPANAQGQWLGLLCALAWPDRIGKLRSGSRYQLSGGIGCDLVEGHPCQGQGALIAIEMGQNDRGSRIFIAEPVALDELVRQLPELVSERQWFDWDEREERVRAERQQVIGELVLGQRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDEGSEGLLARLRCAADWLPDEGWPAVDDESLLARLEEWLLPALSGMTRLEQLKRLNLSDLLRQSLPWPLPKRLDEALPSHFSAPTGSRVRIRYQPGQAPVIPVRIQEMFGQGTTPCVADGRVPLVVELLSPAQRPLQITADLAAFWAGSYEQVKKEMKGRYPRHYWPDNPLEAMPTKVTKKKMGL
>NZ_CP038444.1|WP_005327576.1|751316_753638_+|penicillin-binding-protein-1B
MATQRRKSPPKKAAPKRTIWRTLFWLGFKLSLVVAAFMVVFGIYLDTKVRERFDGEKWQLPVMVYSRPLELYPSQRLSQTQMLRELNMLSYKQVRQPHTPGEYAVNGNRIELVRRPFEFHDGADGARGLRLTFNGARLEGIQSLENQRQLGYAQMDPVLLDRLNTEDREDRLLVRIAEVPDSLLVTLLTTEDRDFYQHGGVSPVAIMRAMVANLLAGRTVQGGSTLTQQLAKNFFLTRERSLWRKAQEAYMAVLIDYRYSKDEILEAYLNEVYLGQNFSQGVYGFGLASYFYFGIPVNELDIDQVALLVGMVKGPSYYDPWRFPERAKARRDLVLKLLMEHGSLTQAEYELASKQPLGIIARGQMSYGRTPAFMGLLKREIQNRFGPDLLKQSGLKIFTSLDPIAQHAAEQAVQTGLATIEKQRGKKKLEAAMVVSDWHKGEVVAMVGGRDPRYAGFNRALDARRQIGSLVKPAVYLTGLSNGLTLGTPLKDQPIRIRGQDGQIWTPQNYDRKFRQSVPLMEALASSLNVPTVNLGLQVGLDKVVDTLHKLGVQQEIQPYPSLVLGAVALSPMEVNQMYLPIANQGLTQPLSAIRAVVNGDGSQLYQHDETAKRVTDPQASWLTLFAMTKTVSQGTARALGAKFPGATMAAKTGTTNELRDSWFAGMDNNELVSIWVGRDDNQPAGLTGASGALQLFSGYMSQRGVNSLGLKMPEGVSWASFSRSSGARVASDCPGSLQVPAKLAGLSEPMSCASPVSNPVNALDQWFGGFFN
>NZ_CP038444.1|WP_042650422.1|753680_754091_+|VOC-family-protein
MTLSLLGGIHHVAIIASDYERSRHFYHQVLGLPILAETLRAERQSWKLDLALPDGSQLELFSFPAPPARPSRPEACGLRHLAFRVQALDPVIAHLEQHGVAVESVRVDELTGSRFTFFADPDGLPLELYEVDAEPA

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Crispr_ID: NZ_CP038444_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038444_2

1479325-1479421

TypeV

Consensus_repeat	Method
GCTCAAGGGCTGATACCCCGCCAGCG	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NZ_CP038444_2

>merge|NZ_CP038444|2|1479325-1479421|CRISPRCasFinder
GCTCAAGGGCTGATACCCCGCCAGCGCCCAAAGCCCGCCTGGCCTTGGAGGGCTTCACCATTGTGGCTGGCGCTCAAGGGCTGATACCCGCCAGCGA

>NZ_CP038444|2|2|1479325-1479421|CRISPRCasFinder
GCTCAAGGGCTGATACCCCGCCAGCG	CCCAAAGCCCGCCTGGCCTTGGAGGGCTTCACCATTGTGGCTGGC
GCTCAAGGGCTGATACCCGCCAGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038444.1\|WP_021141234.1\|1484206_1485433_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP038444.1\|WP_081805658.1\|1483179_1483668_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP038444.1\|WP_041205051.1\|1479471_1480809_-\|IS4-like-element-ISAeme15-family-transposase	unknown	unknown	gnl\|CDD\|379017
NZ_CP038444.1\|WP_005326903.1\|1468889_1469858_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239116
NZ_CP038444.1\|WP_171269454.1\|1480932_1482036_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP038444.1\|WP_041205386.1\|1473443_1475420_+\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_CP038444.1\|WP_081805657.1\|1472366_1473440_+\|cytochrome-o-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
NZ_CP038444.1\|WP_005326901.1\|1470393_1471302_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP038444.1\|WP_005327197.1\|1476378_1477269_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|184001
NZ_CP038444.1\|WP_005326902.1\|1469960_1470290_+\|DUF3634-family-protein	unknown	unknown	gnl\|CDD\|315081
NZ_CP038444.1\|WP_049832154.1\|1487824_1488121_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|213767
NZ_CP038444.1\|WP_041205449.1\|1483744_1484149_-\|IS200/IS605-like-element-ISAs26-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP038444.1\|WP_005332144.1\|1485485_1485905_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP038444.1\|WP_043133429.1\|1486183_1486426_-\|DUF3297-family-protein	unknown	unknown	gnl\|CDD\|371696
NZ_CP038444.1\|WP_005332127.1\|1482185_1483079_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP038444.1\|WP_005332142.1\|1486524_1487841_-\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|341494
NZ_CP038444.1\|WP_043133721.1\|1477549_1478911_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP038444.1\|WP_005327189.1\|1475424_1476036_+\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|182628
NZ_CP038444.1\|WP_005327195.1\|1476035_1476365_+\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|182568
NZ_CP038444.1\|WP_005326900.1\|1471422_1471866_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039

Protein	Function_ID	Function_description	E-value
NZ_CP038444.1\|WP_021141234.1\|1484206_1485433_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.09718e-58
NZ_CP038444.1\|WP_081805658.1\|1483179_1483668_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	5.46678e-21
NZ_CP038444.1\|WP_041205051.1\|1479471_1480809_-\|IS4-like-element-ISAeme15-family-transposase	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	1.77276e-31
NZ_CP038444.1\|WP_005326903.1\|1468889_1469858_+\|nucleoside-hydrolase	gnl\|CDD\|239116	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	1.0668e-137
NZ_CP038444.1\|WP_171269454.1\|1480932_1482036_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.44382e-26
NZ_CP038444.1\|WP_041205386.1\|1473443_1475420_+\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_CP038444.1\|WP_081805657.1\|1472366_1473440_+\|cytochrome-o-ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	0
NZ_CP038444.1\|WP_005326901.1\|1470393_1471302_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.26869e-78
NZ_CP038444.1\|WP_005327197.1\|1476378_1477269_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|184001	PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.	5.93149e-139
NZ_CP038444.1\|WP_005326902.1\|1469960_1470290_+\|DUF3634-family-protein	gnl\|CDD\|315081	pfam12321, DUF3634, Protein of unknown function (DUF3634). This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.	2.71735e-21
NZ_CP038444.1\|WP_049832154.1\|1487824_1488121_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	6.91696e-07
NZ_CP038444.1\|WP_041205449.1\|1483744_1484149_-\|IS200/IS605-like-element-ISAs26-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	7.73052e-45
NZ_CP038444.1\|WP_005332144.1\|1485485_1485905_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	1.92515e-13
NZ_CP038444.1\|WP_043133429.1\|1486183_1486426_-\|DUF3297-family-protein	gnl\|CDD\|371696	pfam11730, DUF3297, Protein of unknown function (DUF3297). This family is expressed in Proteobacteria and Actinobacteria. The function is not known.	7.83022e-45
NZ_CP038444.1\|WP_005332127.1\|1482185_1483079_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.40185e-95
NZ_CP038444.1\|WP_005332142.1\|1486524_1487841_-\|HipA-domain-containing-protein	gnl\|CDD\|341494	cd17809, HipA_So_like, type II toxin-antitoxin sytem toxin HipA from Shewanella oneidensis and similar proteins. This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Shewanella oneidensis HipA, a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. In the Shewanella oneidensis HipAB:DNA promoter complex, HipB forms a dimer that binds the duplex operator DNA, with each HipB monomer interacting with separate HipA monomers. The HipAB component of the complex is composed of two HipA and two HipB subunits.	4.36737e-159
NZ_CP038444.1\|WP_043133721.1\|1477549_1478911_+\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.57944e-157
NZ_CP038444.1\|WP_005327189.1\|1475424_1476036_+\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|182628	PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional.	1.25062e-128
NZ_CP038444.1\|WP_005327195.1\|1476035_1476365_+\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|182568	PRK10582, PRK10582, cytochrome o ubiquinol oxidase subunit IV; Provisional.	1.72324e-54
NZ_CP038444.1\|WP_005326900.1\|1471422_1471866_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	9.86317e-21

>NZ_CP038444.1|WP_043133721.1|1477549_1478911_+|MFS-transporter
MNDFTMTRGERRATWALGSVFSLRMLGMFMVLPVLTTYGMSLAGASEALIGLAIGIYGMTQALFQIPFGLLSDRIGRKPLIVGGLLMFAAGSVIAALSDSIWGVIVGRALQGSGAISAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVTGPLITQAVGLSGLFWLIALLALAAIAMVIWVVPTPAAHLQNRESAMVRGGFRTVLTNPRLLKLNLGILCVHTLLMSSFVALPPLLEQAGLAREQQWQAYLVTMLVAFVSVVPFIIYAEKHRQMKRVFIGCVGVMLAAELVLWQAGLQLWGLLAGLQLFFVGFNVMEALLPSLISKESPPGYKGTAMGVYSTSQFLGVAIGGSLGGLLYSLGGGPLVFGGCAVLALLWFGVSLTMAEPPYVSSLRIVLPEGVEATPALEQRIRACDGVSDVLLVREEHSLYVKVDSKRLTRSDLERLVSL
>NZ_CP038444.1|WP_005327197.1|1476378_1477269_+|protoheme-IX-farnesyltransferase
MMKQYLQVTKPGIIFGNLISVIGGFLLASKGSLDVPLFILTMVGVSLVVASGCVFNNYIDRDIDCIMERTKNRALVRGLIAPGVSLWYATALGVAGIALLYFAANPLAALLAVLGFLVYVGVYSLYMKRHSVYGTLVGSLSGAAPPVIGYCAVSGQFDSGALILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKHHITLYILAFMVPTLMLFLGGYAGYKYLIVATAVSVWWLGMALSGYKAAVDDSLWARKLFMFSIVTITCLSVMMSVDFQPDAAPVLVSMLP
>NZ_CP038444.1|WP_005327195.1|1476035_1476365_+|cytochrome-o-ubiquinol-oxidase-subunit-IV
MSHSVDNHGASHGSVKSYMTGFVLSLILTAIPFWMVMDGSASHAMVLGTVVGMAVVQIFVHLIYFLHMNTSSEERWNLVALVFTVLIIAIVVVGSLWIMYNLNINMMVH
>NZ_CP038444.1|WP_005327189.1|1475424_1476036_+|cytochrome-o-ubiquinol-oxidase-subunit-III
MATDVLHHTHGAHEDGHHDAGATKVFGFWIYLMSDCILFATLFATYAVLVNGTAGGPTGKDIFELPFVFAETMLLLLSSITFGFGMLAMNKNKVSAVNTWLLVTFLLGAGFIAMEIYEFHHLIVNDAGPDRSGFLSAFFTLVGTHGIHVTSGLIWIIVMMVLISKKGLTERNRTRLMCLSLFWHFLDVVWICVFTVVYLMGVM
>NZ_CP038444.1|WP_041205386.1|1473443_1475420_+|cytochrome-o-ubiquinol-oxidase-subunit-I
MFGKLTLEAVPYHEPIIMVTIACIILGGLAIAGLITYYGKWQYLWKEWFTSVDHKRLGIMYLILGMVMLLRGFADAVMMRGQQVMASAGSEGYLNAHHYDQIFTAHGVIMIFFVAMPLVIGLMNIVVPLQIGARDVAFPFLNNLSFWFTAAAVVLINVSLGVGEFAQTGWLAYPPLSGLEFSPGVGVDYWIWSLQISGLGTLLTGVNFFATIIRMRAPGMTMMRLPVFTWTALCANILIIASFPILTVTIALLTADRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILVLPVFGIFSEVVATFCKKKLFGYTSLVWATVAITVLSFVVWLHHFFTMGSGANVNAFFGITTMIISIPTGVKIFNWLFTMYRGRIEFSSPMLWTVGFIITFTVGGMTGVLLSVPAANFVLHNSLFLIAHFHNVIIGGVVFGCFAGITYWFPKAFGFKLDDVWGKRAFWFWITGFFVAFMPLYVLGFMGMTRRVSQNIDPEFHGWLVVAACGAGLIAIGVLCQLIQVVVSIRDREKNRDWTGDPWGGRTLEWATSSPPPFYNFAIEPKVTGLDAFWEAKEDGSAYRQPAKYAPIHMPKNSGAGVIIAAFSVVFGFAMIWHIWWMAIAGFVGMIATWIIHSFNDDVDYYVQVDEIERIEGQHFDNINKVA
>NZ_CP038444.1|WP_081805657.1|1472366_1473440_+|cytochrome-o-ubiquinol-oxidase-subunit-II
MRPFEVKRGLGALLLMATAGLLSGCDMALMSPKGQVGLEQKSLILTALGLMLIVVIPVIIMTVAFARKYRASNTTAKYTPDWSHSNKIEAVVWTVPVIIVAILAVITWKTSHSLDPYKPLESDVKPIQVDVISLDWKWLFVYPELGIASVNELAFPVNTPINFRVTSDTVMNSFFIPQLGGQIYAMAGMQTKLHLIANEAGQYKGISGSYSGAGFSGMKFKAIATQDQAGFDAWVAKVKQSPKMLSTMGEFDALAKKSENHPVEYFASADPKLFVNVINKFMGGMSHGGHDAAKDGAMDHEAMKHDAAKAEPMDHKAMNHDAAKAESMDHAAMSHDEHAGHMATSMADKSVKAGSEE
>NZ_CP038444.1|WP_005326900.1|1471422_1471866_+|carboxymuconolactone-decarboxylase-family-protein
MSDRIQLASQVPAAVSAMMGLEAYLGGTDIPLSLKELIKLRASMLNGCAYCIEMHAEVAMKHGDSPQRLLALAAWRESPLFDERERAVLALTDEVTLIGERGLTEETYQQALALLGDTLLAQCLMQVVTINAWNRIAVATRMEHKHP
>NZ_CP038444.1|WP_005326901.1|1470393_1471302_-|LysR-family-transcriptional-regulator
MLDRVRILAQVVESGSFSRAARALNLAPSSVTRTIDALEQQLGIPLFKRSTRQLVLTEQGEYFLARSARLLEEADQLVQSLQPLPVAPEGPLRVSVFESFGAAWLAPRLPAFLARYPGVRLEIELDNRLVDLDAENVDVAVRIGRPVDSGLHARHLLTNRTLLVASPAYLARHGEPAHPDELAHHNCLIRGHGRQRQHWYFRQGAQRHRVAVRGNLASVGGTPLLCAAQAGTGILLLSSWMVQQGIDDGTLQPLLPDWQASPYEDRHDEIHAVFRGGRFLKPQTRAFIDFLIEVMAPLQVPR
>NZ_CP038444.1|WP_005326902.1|1469960_1470290_+|DUF3634-family-protein
MAWLSLLVAIALIWWLMKLGRGALFEIRLQPGKVLLKRGSVPPRFLAQAKQILQQEPVRGRILGQRDGNGVRLVFSRSIPEPVAQRLRSVFPYGDYRGVTSPPDGRNAR
>NZ_CP038444.1|WP_005326903.1|1468889_1469858_+|nucleoside-hydrolase
MTHKIILDTDPGIDDAMAILFAEAHPAIDLLAITTVFGNATIENGTRNALWLKQKYGMRAEVAQGAAAPLLREPVGPTTVVHGPSGLGDVEAGEVTLAPDPRPAWQYIVETVKANPGEITLVTIGPLTNLALALEAAPEITALVKQVVVMGGAFGVNGHRGNVTPYAEANIHDDPEAADRVFTAPWPVVIIGLDVTQQSFFSSAYLDALRDDAGEPGRFLWAVSRFYLRFYSERIGLNGCHVHDPSAIAYVIDPELFTLREGPVRVIDHGPAIGHTLQKFDGKSHPHDEWAGFPAQRVGVAVRDQALLALYRETLVAWGKDC
>NZ_CP038444.1|WP_041205051.1|1479471_1480809_-|IS4-like-element-ISAeme15-family-transposase
MSIANDLNDVVEASGDMLARLAIFADHIPDEWITAAAALSEKATIRRRRLPSDMVLWLVVGMAFFRNGPISEVARRLNICAEGLANDALLADSALSQARQRLGKQPLEWLFKQCADVWGRERYPEDHWHGLQVFAIDGALFRTQDMPELRAHFGSGNTSTNRQTPYPMLRLVTLMNVRSHVIANAAISPYRKGEIPLASEFIHSLPDKSVTLLDKGFFGADLLLRIQAEDTDRHWLIPERKGLVYTELERYGDGDRLLQMTVSPQARKKNPALPTHWQVRAVTYEVAGKEKTVFTSLPVARFSAAQVATLYHERWEIELGYRDIKSAMQHNAITLRSKKVDLVYQELWGLLLGYNLVRREASQAAVAHQRAPNEVSFKFACQFIANQMAVMAGALSPAHTPRRLAELRGCIGVMFIEKRPRPSRPRAVKISKTRFPVNRNAAPLK
>NZ_CP038444.1|WP_171269454.1|1480932_1482036_-|YdcF-family-protein
MKKTAIALTLTSLLTLPLVVSSDAWAAPVRSLQKEQNYEQFISKRQVVDQLLADATRIFHSPARVSDAGFTAKMPSNMEQVTTLLLEAHQLEPYRTDLLISAANAQIYNGNVERAIALFEQALTAAPDDLDINTYLATWLRFKGDQTKSDGYVKRVVELNAGRAADLQRLFATVDRVVATPLKERQGRGEKKGRRAIVTLGYALNPDGSMNDILLGRLETTRALAQADPAALVILTGGVPQNRQTEGKLMADWLAKKGIDRSRIIEENYATSTVENALYSGYALARHEIEYATLVSSASHVRRGQTLLEIACWQSGPATIRIDSVAYPDKPLSALAKASPEELLGIYRDALRTYGLWSYRSAPLVER
>NZ_CP038444.1|WP_005332127.1|1482185_1483079_-|LysR-family-transcriptional-regulator
MNQDAFALLPAFVAVVESGSFSGAARQLGLSKSVLSKKVSQLEQALGCQLIYRTTRSLTLTEAGERYFETVRHAVRLASDGEDAIGALQSAPRGLLRVTVPMVYGRRHIAPLVPEFLALHPEVQLQLEMSDAQQDLVAEGFDVAVRIGELEDSSLVARRLAPCLSTLCAAPAYLAQAGTPHTPADLERHNCLFYSLFRGGTQWRLHGPEGEVAITPRGNFEVNNSDAIHTALLAGLGIGNMPDFIVARDLAAGRLVPVLPGHALPEHGVWCVYPRRRHLPAKVEAWLAFLQERLGLR
>NZ_CP038444.1|WP_081805658.1|1483179_1483668_+|DMT-family-transporter
MIPPLVDRGPGRPALGQTLGQTLGALAAFAAGLLLALMIAQNGALARATDPWLGSWLAHGVGTLVAALLWWLSPRPPTPEAAPPWAWLGGLPGALTVVLAALCLNSSLGMAGTLALLLLGQLLFGALCDGLGWLGLARRRPSGKDALAALLVMAGALLIVLG
>NZ_CP038444.1|WP_041205449.1|1483744_1484149_-|IS200/IS605-like-element-ISAs26-family-transposase
MQFTKINKSRHSAYALHVHLVFITKYRKPILGDLHHASFGQCAAEVCRDFGAELKECDGEADHVHMLIEYAPTVQLSVLVNSLKAVTSRRLRNEFLDLRGAYSKPVLWSRSYFAGSCGGAPLEVIKQYIQNQRG
>NZ_CP038444.1|WP_021141234.1|1484206_1485433_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MQILKAYKFRLEPTEQQAQRLRQLGGCARYVWNHGLAETKRILDAGEKLPSAFELNRMLTSWKKDPEMAFLAEAYTDNLQQKLKDLHGAWMRCFDKKLAAKAPVFKKKSDNRDAIRFVNFDKYCRLEKGRVKLPAGLAWVKFRQSQPVEGKIKNATVSQAAGHWYISFQVEQETLEPIHPSGSMVGLDAGIAKLATLSDGTVFEPVNSFKTNQTKLARLQRQLSKKVKFSSNWKKQKAKIQRLHSHIANTRRDYLHKVTTTISKNHAMIVIEDLKVASMSKSAAGTTSQPGRNVRAKSGLNRSILDQGWFELRRQLEYKQAWRGGQVLAINPAYTSQQCACCGHTAKDNRQTQSQFKCAACGYEANADVNGARNILAAGHAVLACGGVVQSGRPMKQEPGTARAAITQ
>NZ_CP038444.1|WP_005332144.1|1485485_1485905_+|DMT-family-transporter
MILLGLLNGVAVSLSRTLNGRLASARGAMTASLANHLLGFGLLGALLILKGAPWERLAGLDPWLLLGGVLGALFVAISSWAIGRVGALACALLIVTGQLAGGALLDALAGRLAASDLLGILLVLAGAALQRWQAGKPRS
>NZ_CP038444.1|WP_043133429.1|1486183_1486426_-|DUF3297-family-protein
MSDNKPALPDHLAANPRSPHHVAECFQHEIGIRVNGKERTNVEEYCISEGWVKIPSPKAKDRYGNAMLITVKGTVEAFYA
>NZ_CP038444.1|WP_005332142.1|1486524_1487841_-|HipA-domain-containing-protein
MMSGSERHRLELRLGNQLIGHLEYDSQRDTFQLGYTPAWQARGFPISPPLALDGSASSAQIRAYLGNLLPENRGLEHLIEALSVSRSNLFALIHGIGRDVSGAVTFTLPAEPDIPTHFRPITPEELMLRLDQPELWPLEVWDGRPRLSVAGVQAKLNLLRLEGALGFGEGEICSTHLLKFEHHPHLVINEFVTMRLAALLGMPVAQVELHRVGQGDKSHRGLLVERFDRRLDEDGLRVRRRHMIDACQGLGFPVTRKYERNFGDGRDVAHIREGVSLPRLFSLSVLCVNPAQARLDMLQWLLFNLCVNNHDAHGKNYSFFVSKAGLMPTPWYDLVNVGLYPEFNQHLAMAIGDEFAPEAVNAWQLLEMAEACDLPKRLLQQTLHKVASDILHQLDAAIALVETDNPAELAYLARYRDDVERRCHHFQEQATLLPELQR
>NZ_CP038444.1|WP_049832154.1|1487824_1488121_-|helix-turn-helix-domain-containing-protein
MMADASLQTGPKELDPASLGLAIRERRKAARMTQEVTASLCGISKKTLIKIEKGGDVYLSTLLQVMNALGLRLQLVQEAGSQVTSDSSQSEVGDDEWF

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Crispr_ID: NZ_CP038444_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038444_3

1718253-1718376

Orphan

Consensus_repeat	Method
ATGGCAACGCTTGGTGTAATCCTGCGCTTTGGCTAG	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP038444_3

>merge|NZ_CP038444|3|1718253-1718376|CRISPRCasFinder
ATGGCAACGCTTGGTGTAATCCTGCGCTTTGGCTAGGGCAATCATCCGTCATTTCCCTTTGAGGGAGGGTGAGGGAGATGGCCAGGCGATGGCAACGCTTGGTGTAATCCTGCGCTTTGGCTAG

>NZ_CP038444|3|3|1718253-1718376|CRISPRCasFinder
ATGGCAACGCTTGGTGTAATCCTGCGCTTTGGCTAG	GGCAATCATCCGTCATTTCCCTTTGAGGGAGGGTGAGGGAGATGGCCAGGCG
ATGGCAACGCTTGGTGTAATCCTGCGCTTTGGCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038444.1\|WP_005342491.1\|1727645_1728596_+\|IS1595-like-element-ISKpn3-family-transposase	unknown	unknown	gnl\|CDD\|372298
NZ_CP038444.1\|WP_005329094.1\|1709606_1710644_+\|porin	unknown	unknown	gnl\|CDD\|225744
NZ_CP038444.1\|WP_005331991.1\|1718410_1720180_+\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	unknown	unknown	gnl\|CDD\|183016
NZ_CP038444.1\|WP_171268864.1\|1728830_1730036_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP038444.1\|WP_042649655.1\|1707148_1709221_-\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236966
NZ_CP038444.1\|WP_171269460.1\|1715951_1718207_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|236924
NZ_CP038444.1\|WP_005331307.1\|1715404_1715923_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP038444.1\|WP_042649653.1\|1705374_1706271_-\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212519
NZ_CP038444.1\|WP_042649654.1\|1706344_1707004_-\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP038444.1\|WP_041206001.1\|1725385_1725940_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP038444.1\|WP_171268863.1\|1726888_1727557_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038444.1\|WP_171268860.1\|1714916_1715411_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP038444.1\|WP_043128808.1\|1711933_1713124_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP038444.1\|WP_171268861.1\|1721522_1722272_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP038444.1\|WP_171268859.1\|1713284_1714790_-\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP038444.1\|WP_171268862.1\|1723238_1725092_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP038444.1\|WP_005331989.1\|1720179_1721175_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP038444.1\|WP_005331987.1\|1721325_1721526_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391
NZ_CP038444.1\|WP_041206003.1\|1722482_1723127_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP038444.1\|WP_043128829.1\|1710846_1711788_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP038444.1\|WP_005342491.1\|1727645_1728596_+\|IS1595-like-element-ISKpn3-family-transposase	gnl\|CDD\|372298	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.	2.45102e-32
NZ_CP038444.1\|WP_005329094.1\|1709606_1710644_+\|porin	gnl\|CDD\|225744	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane].	1.12867e-40
NZ_CP038444.1\|WP_005331991.1\|1718410_1720180_+\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NZ_CP038444.1\|WP_171268864.1\|1728830_1730036_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.1031e-34
NZ_CP038444.1\|WP_042649655.1\|1707148_1709221_-\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|236966	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.	0
NZ_CP038444.1\|WP_171269460.1\|1715951_1718207_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|236924	PRK11539, PRK11539, ComEC family competence protein; Provisional.	2.93203e-112
NZ_CP038444.1\|WP_005331307.1\|1715404_1715923_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	3.2069e-47
NZ_CP038444.1\|WP_042649653.1\|1705374_1706271_-\|histone-deacetylase	gnl\|CDD\|212519	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11. Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients.	2.09752e-134
NZ_CP038444.1\|WP_042649654.1\|1706344_1707004_-\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	1.75313e-48
NZ_CP038444.1\|WP_041206001.1\|1725385_1725940_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	1.16294e-83
NZ_CP038444.1\|WP_171268860.1\|1714916_1715411_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	2.27434e-27
NZ_CP038444.1\|WP_043128808.1\|1711933_1713124_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP038444.1\|WP_171268861.1\|1721522_1722272_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	1.93981e-155
NZ_CP038444.1\|WP_171268859.1\|1713284_1714790_-\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP038444.1\|WP_171268862.1\|1723238_1725092_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP038444.1\|WP_005331989.1\|1720179_1721175_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	2.0377e-167
NZ_CP038444.1\|WP_005331987.1\|1721325_1721526_+\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	2.27803e-17
NZ_CP038444.1\|WP_041206003.1\|1722482_1723127_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	5.13731e-165

>NZ_CP038444.1|WP_171269460.1|1715951_1718207_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MDLRLLSFALGASSSLLWPWLPSTAWGGALLAFAILLAHGRHWRLLFLVLGVLWMQLNLQYRLTWLDKLETQTSHIITARVQSTEPSGDKPRDKFARLLLRVETLDEQPLGVAPLVRINAYQALPYLPAGSRITLVSSLKPAHGLANEAGMDGRRLLLGKGITATGNLRRLIEVQGAAPGMRERWLAAASTAWQGLEQAPLLAALSFGEQGGITDAQWDLFRGSGLTHIIAISGQHIALVAVLGWWLGRLLGLRGAILVSLLFAAVYSWLAGFAVATERALIMVLVWSLLRWLKRDWPSHRIWLWAFVVLVLWDPFALYSAGFWLSFMAVALLLLASLLHARPGLVRLQCLLLLGLLPLQLLLFEGVAPLALLLNLLALPLFCLGIIPLSLIGVLLAPISTALAHGLFWLSDLGLTWVLWGLGLLADHLQLWWSVPGWLMPVSTLLVLLWGAWHLPGGRGLLLPVGAALLLGAWPAPTPWQVRVLDVGQGLSVLVTRGERGILYDTGDRYPGGYNMAEAAILPVLNRLDVRVLDALIISHKDRDHAGNRQTMLQAMPVRRELSSFGFARSTTLCRRGQRWHWQGLDFRVLWPERPGAGRNNDSCVVQISDGRHRLLLSGDIEQEAERRLLALESKGEGGVFASTSASTRFSTLASAVLVSPHHGSRTSSIPGFVAAVNPDVVIHSAGDRNQWQFPRPEVVARYQGARQWVTGQDGAILIEAGEAGLEIRPDREQGPWYRRNGHWWRPRLWH
>NZ_CP038444.1|WP_005331307.1|1715404_1715923_-|DUF2062-domain-containing-protein
MPKRLIKRWLPDQDKLKEHKHLRLFGKLLLDANLWHLNRRSAAGAFAVGLFMAWIPLPCQMLLAAGGAILFRVNLPLSVALVWLSNPVTMPPLFYGAYLVGCQLLGHPAQHIDIQFTWAWLVSVFETLAPPLLLGSLVLALLSSLLGYTLIRTFWRINTVRQWQKRKGARAC
>NZ_CP038444.1|WP_171268860.1|1714916_1715411_-|DUF2062-domain-containing-protein
MLSRWLVRIKINPDTLRQQKWFALFGERLLTPALWQGGTRALSGAVAAGLFASWIPVPMHSLVAVGLALAFSLNLPLALLVVWFNNPLTLPFMYLYAYRTGCLVLHQTPEPFHLTWSLHWLEHEAATLVPPFLLGSLLLAVLTATTGAMLTLLMLQLGRLSHSR
>NZ_CP038444.1|WP_171268859.1|1713284_1714790_-|DUF853-family-protein
MAQPLTLAYANGQPISLLPAMANRHGLITGATGTGKTVTLQVLAEGFSRLGVPVFLADVKGDLSGFGAGGTPSAKLDAHLAQLGIPAPAFAASPTLFWDLFAEQGHPVRATISDMGPLLLARLLGLNDTQSGVLELVFKVADDEGLLLLDLKDLRAMVQFAGDNAKSLTTRYGNVSTASIGAILRNLLTLESAGGDHFFGEPMLDIQDLLQTDGAGHGHINVLAAGKLTQSSRLYACFLLWLLSELFEQLPEVGDPDKPMLVFFFDEAHLLFNDAPKALLEKIELVVRLIRSKGVGVYFVTQSPADIPDSVLGQLGNRVQHALRAFTPSDQKAVRIAANTLRANPAFDAAGVITELGLGEALVSLLDEKGRPCVVERAFIAPPASRIGPLNDAERQALIQGSVLHGRYETREDRESAFERLNGGAPTASADVPQTPSEQGGGLLDALNGILFGRTGPRGGQHDGVVQTAAKSVARTLGNEVGRQLVRGVLGSLLGGSKRRR
>NZ_CP038444.1|WP_043128808.1|1711933_1713124_+|aspartate/tyrosine/aromatic-aminotransferase
MFEKVVAAPADPILGLTEAFRADSRSHKINLGVGIYKDETGATPILHCVKKAEQKLLTDEKTKNYLGIEGNIEYGRIVQQLLFGQDSALVASGRAKTAQAPGGTGALRIAAEFVVRNGLAKTIWISDPTWANHVSVFQAAGLTVKWYKYYDAATKGLDFAAMQASLAEAQAGDLVLLHGCCHNPTGIDPTADQWRALAKQSAAAGWLPLFDFAYQGFARGIEEDAEGLRIFAECHDELLVASSFSKNFGLYNERVGAFTLVSATKAIADVAFTQVKTVIRANYSNPPSHGAAVVTTIVSDPALYAEWVEEVAAMRVRIREMRELLVEKLSALGVSQDFSFIREQNGMFSFSGLSKDQVERLKSEFAIYIVGSGRISVAGITRANIDPLCDAIAKVL
>NZ_CP038444.1|WP_043128829.1|1710846_1711788_+|hypothetical-protein
MIDFSHPEWRALAQQLLGHSPVVIRGRQWQPLVGLLKDNQLLLALGNHRYELTPAGRRYLTRELMLAELACAPPEPEEWLHAQGWQLGEQVNERVLAALYRKSDVNFTPNEQIDFEDKGIRLCADQLLRLRAAQPFSLFFSSGTLIDAAPWLQALGEVALPERTLAGLGKILWGEGNIERVITTDSVGAFAELLLESGCLLVWAPPSASLALQQVVAALPPNVLWSHLTALDPAGVDRVQALAQRLGRPASWWLPRDLAPIKEAYAAPLQDARPWEPSRIPRPLRAWCSDLVESNRGLSAEVCALASGWHAIG
>NZ_CP038444.1|WP_005329094.1|1709606_1710644_+|porin
MKKTILAIAIPALFASAANAAVVYDKDGTSFDIYGRVQANYYGEHDDTDAELVGSSRLGWSGKVALNNTWSGIAKTEWQVSAENSANKFDSRHIYVGFDGTQYGKIIFGQTDTAFYDVLEPTDIFNEWGDVGNFYDGRQEGQIIYSNTFGGFKGKLSYQTNDDKAVKVTDIGQGIKEDAIYGPNAKRNYGYAAAAGYDFDFGLGLNAGYAYSDLESTASSASGDKKEWALGAHYAINGFYFAGMYTQGDLSYDNTTQGSNKDKGRGYELAASYNVDAWTFLAGYNFAEGKVLSNSSGSSYEDIVDETLLGVQYNFTSKFKAYTEYKIQGINDKDDEFTVALQYNF
>NZ_CP038444.1|WP_042649655.1|1707148_1709221_-|ATP-dependent-DNA-helicase-DinG
MLSTRLKATIRNTYRQIADGLPGFVPRKEQNFLVAEIAKTLTGEYEKSRRILVAEAGTGIGKSLSYAQGAIPVARLTQKKLVISTATVALQEQLIHKDLPFYHRHSELPFRFMLVKGRQRYCCEHLLEQAASGAEMANLELDFGSLSKHKPSDSDKERYQALWQAYTEGKWDGDRDNWPKPIPDLCWDRIAADRHSCNKALSHHQHCPFHRARNDMDAADVLVVNHALLLSDLTMGGGIILPPPDECIYVLDEAHHLPTIARDHGAASASIKGSRRWLEKLVQSAGKLARALNKESLLDPQLKLQDALASLQPDLKALEQWLAGNDHLFGSEQHHRFAEGVLPDPLPMLAENLKEASKKALRALDRMQGAIGEALKDGEIRRKEAEPLLAESGFYLQRLESFCALWEMLSRHVPSGKTPLARWMARSEDGDIWLHASPIEVGYLLEEWLWSRCLGAVLVSATLTALSSFSYFRHQVGLKEHDGTRYLRLRSPFEYHKAELYLPKMTHEPSAPGFTQELVDTLPRLLAGKEASLVLFSSYRQMNEVAVGLRAKGLSLLVQGEASRNALLTLHKQKCDGGQASILFGTGSFSEGLDLPGHYLTNLVITKLPFAVPNSPVEEATAEWVEKRGGNPFLQLTVPEASRKLIQACGRLIRKEADRGRVTILDRRLLTKRYGKGLLDALPPFTRRIE
>NZ_CP038444.1|WP_042649654.1|1706344_1707004_-|DUF2057-domain-containing-protein
MKLTVLVPALAGLLWAGSALADSQLEISNPYVVQLIDGESINPKLLDKSSTFPISAGKHQVVVAFEGNYSSRSEIKLVTAEPLVINFTAGDNQKLVLDFKKPRNESEAQQFVKQQKVVLKDKVSGQALASEQFIMPKVGGFQLTRDYQQELLKMGKAFNQPATVAVSSAAVMAAASAPVEVAPSKAQSNPEALTQLQSWYNRADAETRKAFQIWVIQQQ
>NZ_CP038444.1|WP_042649653.1|1705374_1706271_-|histone-deacetylase
MSLRIFYHPYYSSLTLPERHRFPLAKYQAIYQHLAALGYPLAEAPAASREQIARVHDADHVEAALTGQLEREAIRRLGFPWSPMLIERTLRSVGATVAASRHALEQGCGLQISGGYHHAHRDFGSGFCLFNDLVIAARACLDEGRCEQVLIVDLDVHQGDGSAALCTGSRDIITLSLHGEHNFPHHKPASHLDFALPSGMEDDTYLETLSQALNLALRLYRPDLILYQAGVDVHQADELGYLSLSDAGVRQRDAMVFDCAISNGLPIAAVPGGGYRRDWRQLIPLHLSLFEEAKKRYG
>NZ_CP038444.1|WP_005331991.1|1718410_1720180_+|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA
MQQETSQESWPVFKRLLGYVRDRKLGLVGGIIGMLGYAAVDTTFVYSIKPLIDQGLNGNDSSVLKWMPFFVLGIVALRGCAAFLSNYCMAWVGNHVVMRLQQQVFSHLMAMPMSFFDRQNTGNLLSKVTYDAGQVSSAASSTLVSLVREGATVIGLLGLMFWHSWQLSVIFLVVGPVVGVLIGLISRRFRKISRHIQQAVGDITTSTEQMLKGHKEVLMFGGQQVEDKRFYQVSNRMRQQTMKMVAADAIGSPIVQMVASVALAVFLYVATIDSVKATLTAGTFTVMVTSMMMLLKPLKSLTDVNNQFQRGITACQSLFGLLDSTPEQDTGTRTLERARGEIEFRNVTFTYPTKDTPALHNISFKVEAGKSVALVGRSGSGKSTIASLLTRFYDIEQGEILLDGVNIREYKLSELRKQYALVSQHVHLFNDSVANNIAYAAEEKYSREEIQHAARIAHADEFVRKMPEGYDTVIGENGASLSGGQRQRIAIARALLRDSPVLLLDEATSALDTESERHIQAAIDELCKARTSLVIAHRLSTIEKADEILVIDEGHIVERGNHDALMAQQGTYAQLRAIQFGNVAVSNKG
>NZ_CP038444.1|WP_005331989.1|1720179_1721175_+|tetraacyldisaccharide-4'-kinase
MLERLWYGKSGWRWALAPLALLFALVSGGRRFAYWRGWFSTYRASLPVIVVGNISVGGNGKTPVVVWLVEQLQARGWRPGVVSRGYGGKAPHYPYRLDATSTTAQAGDEPVLIARRCGCPVVVAPRRADAVRLLEQSGEVDIVITDDGLQHYALARDIELVVVDGARRFGNGCLLPMGPLREPMTRLKRVDAIICNGGTPAQGEYPMALVAAAPRRVCDDAPLEAPLTGPVDALAGIGHPPRFFATLTGLGYELAERVGYADHQAFDRDELLARFGQRPLLMTEKDAVKCRAFAPPHWWYLPVSAELPAALLDTLLQRLTPLQAPGPDHAH
>NZ_CP038444.1|WP_005331987.1|1721325_1721526_+|Trm112-family-protein
MALDIKLLDIIACPVCKGKLHYQPQSDKAAHELICRFDRLAYPLEEGIPVLLENRARHLPLEELKP
>NZ_CP038444.1|WP_171268861.1|1721522_1722272_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALQSGADRVIVATDDELVRQALRATGVEVCMTSPDHQSGTERLAEVCRHYGFAADTIIVNVQGDEPLIPPVIIRQVADNLAAATAPMATLSVPIKDAEEAFNPNAVKVVTDKDGYALYFSRASIPWDRDRFAKSHEQIGNHYQRHIGIYAYRAGFIQRYVDWAPSALEQVEALEQLRVLWYGEKIHVAQSLEAPPVGVDTQTDLDKVRALLAN
>NZ_CP038444.1|WP_041206003.1|1722482_1723127_+|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVFLVDDHELVRTGIRRILEDVRGIKVVGEAQSGETAVAFCRQHHPDVILMDMNMPGIGGLEATRKILRIRPDVRIIVLTIHSENPFPTKVMQAGAAGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADENPFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLNINGDVELTHLAIRYGMLDADTL
>NZ_CP038444.1|WP_171268862.1|1723238_1725092_+|excinuclease-ABC-subunit-UvrC
MTFSSEPHFDSKAFLSAVTHQSGVYRMYDGGGTVIYVGKAKDLKKRLASYFRTNVDSIKTRTLVRQIADIQVTVTHTETEALILEHNLIKQYQPRYNVLLRDDKSYPWIIITAHQHPRIGVHRGARKVKGEYFGPYPSGGAVRESLHLMQKIFPVRQCEDAVYANRSRPCLLYQLKRCAGPCVAGLVSEAEYAQQVELAKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQIQALRRVTEQQSVSGNVLDELDVVGVAFEQGTACIHVLFIRQGKVLGSRSYFPKVPADTPLDEVVQSFLLQFYLSGQGGRQIPSEVLLDVALEDENVIAETLSQTAGYKVRVQSRTRAERARFIKLASINAQTALRSRLAHKSTITARYDQLEELLELERPIARMECFDISHTMGERTVASCVVFNREGPLSSEYRRFNIDGITGGDDYAAMEQALERRFGKQQEPDKVPDVLFIDGGLGQLRRAEEILARQLEFLGGKYPLLVGIAKGVTRKAGLETLILGESHEELHLPADMPALHLIQHIRDESHRFAITGHRARRAKARTTSTLEDIPGVGPKRRQALLKYLGGLQEVKKAGVDELAKVPGISQELAQSIHDALHSL
>NZ_CP038444.1|WP_041206001.1|1725385_1725940_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTNIPNLLTFFRILLIPVFVILFYLPYQWSYLAAALVFILAAATDWFDGYLARKLNQSTAFGAFLDPVADKIMVAAALVVIVEHYNTIWVTIPAMTMIGREIIISALREWMAELGKRSSVAVSWIGKWKTMIQMVSLTGLIWQYDIWMVWLSYVLLYVATVLTFWSMFQYMKAAWGDLTYHSRF
>NZ_CP038444.1|WP_171268863.1|1726888_1727557_+|hypothetical-protein
MKEDSELSSKRNLLIVVSMLLMAMSVSGATLLEANTFIFKIGFENSKGLGYLLFLGVVTLTIRYYSVAYQYHVQLYDMWANEMIRDYSVFGYSCDDEHWVTPRGLLSNIEIFSRGFQESQDEGENARNEFVFKYEVLGFFRRAVSYTSDCGDYYSTERVSLNSFKDGWKIGDLFQLLMIEFKYQSAAFFRRTEHLEILLPYMISVLSLFSFTFKSNIQILMQ
>NZ_CP038444.1|WP_005342491.1|1727645_1728596_+|IS1595-like-element-ISKpn3-family-transposase
MAKSKIQFQKGYSLFEFLKDYGTEAQCENALFTWRFPNGFVCPECANKTCCRLRRRPRVWQCNHCRHQMSLTGNTIFANTKLPLTKWFLAMHLLSQTKTGLSAMELKRQLGVKYDTAWMLKHKLLQAMKESDDKQPISGIIQLDDVYWGGERRGGKRGRGAAGKTPFVAAVALNKEGHPIKMRMTVVDGFKTKSVADWAKRHIASGSAVISDGLACFKAVKEANCEHLGVVTGGNLDWLDHPAFNWVNTMIGNVKNSLRGSCHTLGAKHLPRHLAEYCFRFNHRFDLKSMLVELGHAVVASPPMPYRLLKLAEGHG
>NZ_CP038444.1|WP_171268864.1|1728830_1730036_+|site-specific-integrase
MQTKFRFTNAAIKALPAQQREAGATELEFSDTEVIGLKLLSGKSQGSKRFLLRYTLQGKKRSIALGRFGDIDVSQARTIARKYKSMLADGIDPVAERDSYKTEPTLSEFFWQTFLPHLKTIGKRSINSDIQRFKHNIEPRFGAMRYRQLKAMDVLQLQSEMVHPNNPQQTAYAPSTANRVLAQLKTMGSYAVRWGILDTNEAAKIKLLKEDNARTRFLSIEEMKRVIEVALQDRNQAAGSFIAMLYLTGARKSEVLLAKWEHVNWEDKTLFVPLTKNGKSRIIYLSALAIDILEKLPRIAGNPYVFASQHIRCQGKPIGEPRCAYERVLQKAGIEDRDEVCFHTARHSVASALVSSGQYSLYDVKAQLAHASIQSSQRYAKLTSERSRNISEGLSSMIQAE

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Crispr_ID: NZ_CP038444_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038444_4

1746146-1746237

Orphan

Consensus_repeat	Method
GCTTATTGCACCCTACGCCTCTCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038444_4

>merge|NZ_CP038444|4|1746146-1746237|CRISPRCasFinder
GCTTATTGCACCCTACGCCTCTCCCGCAAGGGGAGAGGGGATGGTTACCGTGGCGCATTGCGCTGTGCTTATTGCACCCTACGCCTCTCCCG

>NZ_CP038444|4|4|1746146-1746237|CRISPRCasFinder
GCTTATTGCACCCTACGCCTCTCCCG	CAAGGGGAGAGGGGATGGTTACCGTGGCGCATTGCGCTGT
GCTTATTGCACCCTACGCCTCTCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038444.1\|WP_171268875.1\|1750778_1751786_-\|DUF4401-domain-containing-protein	unknown	unknown	gnl\|CDD\|379574
NZ_CP038444.1\|WP_025327412.1\|1750174_1750672_-\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP038444.1\|WP_041204490.1\|1748603_1748858_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038444.1\|WP_025327423.1\|1735503_1735752_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP038444.1\|WP_171268870.1\|1738000_1739377_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP038444.1\|WP_171269461.1\|1749236_1749947_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP038444.1\|WP_025327420.1\|1737299_1737797_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP038444.1\|WP_171268872.1\|1743191_1743620_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP038444.1\|WP_171268877.1\|1755616_1755844_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP038444.1\|WP_171268869.1\|1736596_1737310_-\|DUF4269-domain-containing-protein	unknown	unknown	gnl\|CDD\|379463
NZ_CP038444.1\|WP_163149208.1\|1755166_1755496_-\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
NZ_CP038444.1\|WP_171268873.1\|1746898_1747939_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP038444.1\|WP_106886435.1\|1754352_1754910_-\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP038444.1\|WP_099368881.1\|1742066_1743083_+\|IS5-like-element-IS5-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP038444.1\|WP_088813959.1\|1739879_1741441_+\|IS3-like-element-ISAs20-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP038444.1\|WP_171268868.1\|1735871_1736600_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP038444.1\|WP_171268876.1\|1751879_1752818_-\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|378311
NZ_CP038444.1\|WP_171268874.1\|1748052_1748340_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038444.1\|WP_010674210.1\|1743902_1745516_+\|IS1634-like-element-ISAs25-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP038444.1\|WP_171268871.1\|1741690_1742068_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223704

Protein	Function_ID	Function_description	E-value
NZ_CP038444.1\|WP_171268875.1\|1750778_1751786_-\|DUF4401-domain-containing-protein	gnl\|CDD\|379574	pfam14351, DUF4401, Domain of unknown function (DUF4401). This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important.	4.57162e-32
NZ_CP038444.1\|WP_025327412.1\|1750174_1750672_-\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	2.10545e-33
NZ_CP038444.1\|WP_106886435.1\|1754352_1754910_-\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	3.60584e-51
NZ_CP038444.1\|WP_025327423.1\|1735503_1735752_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	6.1248e-24
NZ_CP038444.1\|WP_171268870.1\|1738000_1739377_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP038444.1\|WP_171268876.1\|1751879_1752818_-\|DUF2157-domain-containing-protein	gnl\|CDD\|378311	pfam09925, DUF2157, Predicted membrane protein (DUF2157). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.07858e-24
NZ_CP038444.1\|WP_025327420.1\|1737299_1737797_-\|peptidylprolyl-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.34671e-90
NZ_CP038444.1\|WP_171268872.1\|1743191_1743620_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	6.79709e-24
NZ_CP038444.1\|WP_171268877.1\|1755616_1755844_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	2.48546e-18
NZ_CP038444.1\|WP_171268869.1\|1736596_1737310_-\|DUF4269-domain-containing-protein	gnl\|CDD\|379463	pfam14091, DUF4269, Domain of unknown function (DUF4269). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved KTE sequence motif.	4.70511e-42
NZ_CP038444.1\|WP_171268873.1\|1746898_1747939_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.63443e-52
NZ_CP038444.1\|WP_163149208.1\|1755166_1755496_-\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	5.08316e-39
NZ_CP038444.1\|WP_099368881.1\|1742066_1743083_+\|IS5-like-element-IS5-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	4.1758e-55
NZ_CP038444.1\|WP_088813959.1\|1739879_1741441_+\|IS3-like-element-ISAs20-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.85301e-23
NZ_CP038444.1\|WP_171268868.1\|1735871_1736600_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.0137e-149
NZ_CP038444.1\|WP_171269461.1\|1749236_1749947_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.5596e-27
NZ_CP038444.1\|WP_010674210.1\|1743902_1745516_+\|IS1634-like-element-ISAs25-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	2.45339e-57
NZ_CP038444.1\|WP_171268871.1\|1741690_1742068_-\|hypothetical-protein	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	2.43787e-10

>NZ_CP038444.1|WP_010674210.1|1743902_1745516_+|IS1634-like-element-ISAs25-family-transposase
MAAPAISIRNLDHLGLVAALCQELGIARMIDALLPKTPPFKVSHGEALVAMIVNGLGFHSSTLHMFPQFFANKPVERLIGPGICADDLNDDVLGRCLDALFEADVSALYQVMAAQVVERLGLKSTAVHLDITSFHVDGAYDCADGDLVGKLQLVRGYSRDHRPELNQVILELICENQAGLPVYMQALSGNSNDTKAFAQTVRRHLSSLKAAQECRYLVGDAALYCADTLQLLAQQQQLFVTRVPVTLNEAKQAVATIGAQPLTALGNGYHGRWQHANYAGVAQRWLLVRSEQASHREQQTLAKNLLKDSTRELKAFAKLCARRFACEADAQAELSCFTASLMLLQLDAEVVGEPVYTGRGRPKRGEEPIGHQFQITGLAATSLACVEEARNQTGVFILATNDHSDTLTMAELLATYKAQQNVERGFRFLKSPEFLTSSLYLKKPERIEALLMVMTCSLMIYAALEHRIRQGLVEQNRSVADMKKKPTQQPTARWIFLRFGGIHEYRLGEAPPQVTELTGDQQIILEVLGERYRQIYS
>NZ_CP038444.1|WP_171268872.1|1743191_1743620_-|protein-kinase
MKYIDVCDKGQGGFAKVVVVKHVETGRLYAKKIYSPQQNIINAVGDEHLKKRFKREVRYQSSLNHPNIAPILEHFLDDEPPYFIMPLAEETLQDELSADSTLGGDPRSALFDILAGLEILHSEGFVHRDLRKVRISGEILLG
>NZ_CP038444.1|WP_099368881.1|1742066_1743083_+|IS5-like-element-IS5-family-transposase
MFVIWSHGTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPQMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH
>NZ_CP038444.1|WP_171268871.1|1741690_1742068_-|hypothetical-protein
MISYQGLVRTFLSRTKDQSELQQLLDEKIITKARAKNYPRKNILLSVMSAYREFKLQALSFEIMNGDRLLFLTDGAYSLISKRDIRDYSITNKQISGLVGKIRSHIESKEIKDDYTVVGCELNIS
>NZ_CP038444.1|WP_088813959.1|1739879_1741441_+|IS3-like-element-ISAs20-family-transposase
MARYSSERKAALLKKLLPPINMSVAELARQENISEVTLYNWRKHAKDGGSPVPGDNKLTDEWPAEAKFAVVLETAALSEIELSEYCRRKGLYPEQVQQWRQACILGQQSARTLQQAEKAQAKADKKRIRQLEQELRRKDKALAEAAALLILQKKPRCLLEQRRRGQLTSLPERQQYVAWWREALEAGARKHPAAEVLGLSLRTLQRWLAGPELSADRRPDAVRSIPAHALSPEERQAVLDVCNSQEFASLPPSQIVPRLADQGRYLASESSFYRILRAADQQHRRGRSQPPRHVPVPTSHTATGPNQVWSWDITYLPSLVRGQYYYLYLIEDIYSRKGVGWEVHEQECGERAAALLQRSIIREQCWKQPLVLHSDNGAPMKSVTLLTKMHDLGVTPSRGRPRVSNDNPYSESLFRTLKYCPQWPSDGFASLEAAREWVRDFMAWYNEEHRHSRIRFVTPNERHRGDDKALLAKRDAVYQAARAQHPARWSGKTRDWTPIGAVMLNPERPEKPEPEQKEAA
>NZ_CP038444.1|WP_171268870.1|1738000_1739377_+|cysteine--tRNA-ligase
MLKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVSFDVVARYLRYAGYDLTYVRNITDVDDKIIKRAAETQVTCDDLTERLIGDMHQDFDALGMLRPDIEPRATQHIHEIIALVETLLEKEHAYVADNGDVMFIVESFADYGKLSGQELEQLQAGARVDVVEAKRNPLDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHGGDYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLAHFDAETVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPAAAAAGGDEQVARFVDAMDDDFNTPEAYSALFDLVREINRQKAEDINVAAGLGARLRELGAVLGILQQDPDAFLKGGEADDEVAEIEQLIAQRNQARADKNWAAADAARNRLTEMGIVLEDSAGKTSWRRA
>NZ_CP038444.1|WP_025327420.1|1737299_1737797_-|peptidylprolyl-isomerase
MVTLHTNHGDITLTLNAEKAPETVANFLQYCRDGHYDNTIFHRVIDGFMIQGGGYAPGFEEKETRASIKNEAANGLSNKIGTIAMARTSEPHSASAQFFINVNNNDFLDFKSPTTQGFGYCVFGEVTAGMDVVNKIKGVKTGNYGRMHQDVPTEDVVITKVTLAE
>NZ_CP038444.1|WP_171268869.1|1736596_1737310_-|DUF4269-domain-containing-protein
MLSDCRLLRTDITAAPAAVFPSAQATPANWRRLDYLAQGNPRQRSAHALLNAGCWDALGRLCQDLALVSTVAIGLDRPGSDLDILCQHPVPARLAALLREQGWTASDKGHQVWLLEQTLTGPDQARWPVELYVTQAPLETLNGWRHLSLMAALLGHFGHDFYQAVVRLRLEAGLKGEAAICRLLGLGGDPYAALLTLEGCELAALHWQAHSQCDSSTPADSPAPLCPEPIKSTHPTS
>NZ_CP038444.1|WP_171268868.1|1735871_1736600_-|UDP-2,3-diacylglucosamine-diphosphatase
MSTLFISDIHLCAQRPDMTAALVRFLERDAPKADALYVLGDLFEFWIGDDDPNPLHSQVAEAFLALSRQDVPIYFIHGNRDFLLGKAFAKRAGMTLLGDPCVIDLYGERVLLSHGDLLCTLDEGYQKFRRITQQKWLRWLFLRLPLGRRQAIACKMRGQSQMENAGKPQTIMDVTPAAVNALLRQHGCQLLIHGHTHRPAVHDFMLDGKPARRIVLGDWFEQGSVLSCSPQGQQLESRPLPE
>NZ_CP038444.1|WP_025327423.1|1735503_1735752_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFLTWVVLGLIVGILAKWIMPGKDGGGFFMTVILGVIGAMVGGYIGTLLGMGTVTGFNLPSILIATVGALIVLFFYNKIRS
>NZ_CP038444.1|WP_171268873.1|1746898_1747939_+|diguanylate-cyclase
MDKILQTLSERVTQARDLESLTRPLLEMLEAVTGLESTYLTQIDVEQGTQSIRYAKNANEVAGLQIPEGITVDWSDTLCRRAIDEGRMFTDNVAECWGDSDAARIMGIRTYLSSPVRTPSGSLYGTLCAASAERKPFVAGSEQLIGFFARLIAEHVEREQLLQQLQQANQELARQALSDPLTGLPNRRALMQELTRLFSLSERAGHPVLIAFIDLDGFKQINDTHGHEAGDKLLITMAQQLSAALRGGDLLARVGGDEFVVVGMGPHQGHETVEGAVQGFQRRLFEQSVFQVPIPSRVLDYPGASVGAVAIDPAHTSIDDALRQADARMYAVKRQRRALEGRAGCI
>NZ_CP038444.1|WP_171268874.1|1748052_1748340_+|hypothetical-protein
MANRVIGQLRALAAKVATLFAELSEFQQRIWVVSIIKDAYTDTFIVNEGSFEEPMQWMHRKGYSAEMLARVDAMARSQVVQLQLGGQCHRLMRVK
>NZ_CP038444.1|WP_041204490.1|1748603_1748858_-|hypothetical-protein
MSISVCALLMACGGDKTTGKACLGANNDSLVEGMQDKCKAGDTVATKHPAYFCDFNYAVAYNSYNSAICVYSGALKPERTTEKS
>NZ_CP038444.1|WP_171269461.1|1749236_1749947_-|transporter-substrate-binding-domain-containing-protein
MGQASASPALGKLHYLTEEYKPYNFTGEDGSPSGFAIELLHQVWQKTGTPPQEISILPWARGYYLLTQKPNVVLFATARTEARDPLFKWACPIGYAEIVLMGLASHPLKLTRLEDAQQHTIGAVRADVGEQLLLNSGFDEQKIMTANRLPQALRMLTSGRVDLISSNKATLMDLIQAQQLDPAQFEVRWVLSSEQFCFAFSHPVDDALVKEFQHGLTQVLASSEFQRIQHKYFPAP
>NZ_CP038444.1|WP_025327412.1|1750174_1750672_-|GDYXXLXY-domain-containing-protein
MRRLGFLLTGLAILVGINVTVWRFEHAMSSGETVLLELAPVDPRSLMQGDYMRLSYALARQLGSPHQEGAATQTLVIRLDEQQVAQRVEGGTPDALAPDQRLLQARWQQGQWWIGPDAFFFEEGTAAQYEQARYGEFRLQADGATLLVGLRDQALKPIGHTRPAW
>NZ_CP038444.1|WP_171268875.1|1750778_1751786_-|DUF4401-domain-containing-protein
MSDLSPWERLRAAHLVEGDAPQDEQPHWSSRFLLGMVGWLAALFLLLFLFMAFESLIREANHALVMGTLLMAAALGLNRLARRSDLWDQFVLALALAADAWLLYGLIDQIDPHSAPLWLGLALLSLAIAALFEHWLVRLFHSFAAAILLTMGLACLGLQLLALPLVMAALTFCWLQAERDPERHSLYESLTLGLALSLLVLGRLHHPLWDGGTSALDELGISRLPLMLNPLLCAALLLGVMVKLKLPLLYGLPLVVISAIIPGMGAGALVLVLGFYARSLGLMTLAGLLLLGFGSLYYYDLGLTLMTKSWLLLGSGALLLGARQLLNILGKEIAS
>NZ_CP038444.1|WP_171268876.1|1751879_1752818_-|DUF2157-domain-containing-protein
MLVTSRQTLLDWVRRGRLPRESLPAALALCDLPPAPVRWQWLFDRLLLWLGCLCLGAGLVFFVAFNWQALGRLSRLALLELPLLAMLLVLWRKPLADTPRQTLLLAVALNIGALLALVGQTYQTGADPWQLFATWALLLLPLAALGRSPLLWTLCWLLGQLALVLYWRLGLIDLFFSFDEEALGWCLTLLNAALWGALILAPARLGLMPSWLPGLAAGLGVTLLALLALFDAASPWVWPAWLAWLGAAYLRWHHRFIAGLAMGCLSLIAVILAALGKWMEPDMNGFLLLSLIAIGLSVAASRWLQQQRRSHA
>NZ_CP038444.1|WP_106886435.1|1754352_1754910_-|TMEM165/GDT1-family-protein
MEALLTSTLSVAIAEIGDKTQLLALLLICRFRKPWPIIAGMLVATLLNHAGAAWIGEFISSWMDPKVMTWLVAGAFIAMAVWILVPDKMDDEESSLDKYGPFMATFVLFFIAEIGDKTQIATVLLAAKYDSLTQVITGTTLGMMLANVPVVLLGKLGADKLPLQGIRIACAILFVGLGASTLIFV
>NZ_CP038444.1|WP_163149208.1|1755166_1755496_-|stress-response-translation-initiation-inhibitor-YciH
MSHDNNSRLVYSTDGGMIKESAPTQSASPFPADGVVRIRRETKGRKGAGVITIHGVPADQQKTIATLLKKKCGTGGGLKEGIIEIQGDKRDLIKAELEKAGFQVKLVGG
>NZ_CP038444.1|WP_171268877.1|1755616_1755844_+|ferrous-iron-transport-protein-A
MVLTQLSPGQRARIKNMNQLGRTLRRKLMVMGLLPQTEILYLRAAPLGDPLQVKCQGICLSMQKSLAQHIEVEPV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP038444_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038444_5

2033116-2033192

Orphan

Consensus_repeat	Method
CGCTAGCGCATATGCATGATCTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038444_5

>merge|NZ_CP038444|5|2033116-2033192|CRISPRCasFinder
CGCTAGCGCATATGCATGATCTTGTTATTGATGCTGGCGATGGGGTCACATCGCTAGAGCATATGCATGATCTTGTT

>NZ_CP038444|5|5|2033116-2033192|CRISPRCasFinder
CGCTAGCGCATATGCATGATCTTGTT	ATTGATGCTGGCGATGGGGTCACAT
CGCTAGAGCATATGCATGATCTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038444.1\|WP_042650276.1\|2032630_2033062_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|312075
NZ_CP038444.1\|WP_171268917.1\|2030752_2031460_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181609
NZ_CP038444.1\|WP_042650272.1\|2040732_2041497_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038444.1\|WP_005327789.1\|2034231_2035176_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP038444.1\|WP_005327814.1\|2044369_2044963_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NZ_CP038444.1\|WP_042650273.1\|2039847_2040573_+\|oxygen-insensitive-NADPH-nitroreductase	unknown	unknown	gnl\|CDD\|182710
NZ_CP038444.1\|WP_171268913.1\|2026537_2027143_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP038444.1\|WP_042650271.1\|2041490_2042045_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|368781
NZ_CP038444.1\|WP_171268915.1\|2028093_2028636_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038444.1\|WP_171268912.1\|2025806_2026541_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP038444.1\|WP_043133480.1\|2042057_2043278_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP038444.1\|WP_042650274.1\|2038217_2039780_+\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|225525
NZ_CP038444.1\|WP_171268914.1\|2027185_2027929_-\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|236511
NZ_CP038444.1\|WP_042650284.1\|2031546_2032563_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|178323
NZ_CP038444.1\|WP_171268916.1\|2029202_2030102_-\|aldo/keto-reductase-family-oxidoreductase	unknown	unknown	gnl\|CDD\|227322
NZ_CP038444.1\|WP_042650278.1\|2030272_2030680_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP038444.1\|WP_041206904.1\|2035253_2035955_-\|DUF2982-domain-containing-protein	unknown	unknown	gnl\|CDD\|378593
NZ_CP038444.1\|WP_171268918.1\|2043371_2044298_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP038444.1\|WP_081805676.1\|2028847_2029126_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NZ_CP038444.1\|WP_171269468.1\|2036123_2038064_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645

Protein	Function_ID	Function_description	E-value
NZ_CP038444.1\|WP_042650276.1\|2032630_2033062_-\|PAS-domain-containing-protein	gnl\|CDD\|312075	pfam08448, PAS_4, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	0.000143922
NZ_CP038444.1\|WP_171268917.1\|2030752_2031460_+\|short-chain-dehydrogenase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	5.4263e-31
NZ_CP038444.1\|WP_005327789.1\|2034231_2035176_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.99133e-44
NZ_CP038444.1\|WP_005327814.1\|2044369_2044963_-\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	2.67815e-136
NZ_CP038444.1\|WP_042650273.1\|2039847_2040573_+\|oxygen-insensitive-NADPH-nitroreductase	gnl\|CDD\|182710	PRK10765, PRK10765, oxygen-insensitive NADPH nitroreductase.	1.22681e-157
NZ_CP038444.1\|WP_171268913.1\|2026537_2027143_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	2.74095e-79
NZ_CP038444.1\|WP_042650271.1\|2041490_2042045_+\|VOC-family-protein	gnl\|CDD\|368781	pfam06185, YecM, YecM protein. This family consists of several bacterial YecM proteins of unknown function.	2.71827e-25
NZ_CP038444.1\|WP_171268912.1\|2025806_2026541_-\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.50372e-59
NZ_CP038444.1\|WP_043133480.1\|2042057_2043278_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.77809e-59
NZ_CP038444.1\|WP_042650274.1\|2038217_2039780_+\|AbgT-family-transporter	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	0
NZ_CP038444.1\|WP_171268914.1\|2027185_2027929_-\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|236511	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed.	4.26417e-126
NZ_CP038444.1\|WP_042650284.1\|2031546_2032563_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|178323	PLN02721, PLN02721, threonine aldolase.	8.72397e-148
NZ_CP038444.1\|WP_171268916.1\|2029202_2030102_-\|aldo/keto-reductase-family-oxidoreductase	gnl\|CDD\|227322	COG4989, COG4989, Predicted oxidoreductase [General function prediction only].	1.52832e-171
NZ_CP038444.1\|WP_041206904.1\|2035253_2035955_-\|DUF2982-domain-containing-protein	gnl\|CDD\|378593	pfam11201, DUF2982, Protein of unknown function (DUF2982). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	8.53417e-72
NZ_CP038444.1\|WP_171268918.1\|2043371_2044298_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.19515e-50
NZ_CP038444.1\|WP_081805676.1\|2028847_2029126_+\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	2.66511e-36
NZ_CP038444.1\|WP_171269468.1\|2036123_2038064_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.53303e-106

>NZ_CP038444.1|WP_042650276.1|2032630_2033062_-|PAS-domain-containing-protein
MEIREFHWLMNIVQNLDVGLVVLDKGYRVQVWNGFMESHSGRLAGEVRDQVLFDLFPDVDRAWLERKANMVFKLNNRAFSTWEQRPYLLRFSNYRPITGSAPHMYQNLTLVPLADFGGEVTHLAIMIYDATDEAMLITGQRQG
>NZ_CP038444.1|WP_042650284.1|2031546_2032563_+|low-specificity-L-threonine-aldolase
MRYIDLRSDTVTQPTEAMRQSMLHAEVGDDVYGEDPSINALEHKGAELLGKEAALFVPSGTMSNLLAMMSHCQRGEGAVLGSASHIYRYEAQGSAVLGSVALQSVPMQADGTLALKDVRAAIAPDDAHFVQTRLVCLENTHNGKVLPLPYLREMRDFVDEHGLLLHLDGARLFNAVVASGEPVAAIAAPFDSISVCLSKGLGAPVGSLLVGSHGFIARARRLRKMLGGGMRQAGILAQAALFALDQHVTRLADDHRRARRLAEGLASLPGVALNMEEVQTNMVFLRLTQGDPATLLGFMKERGILFSGYGELRLVTHLQITDDDIDEVIDAFTEFLNG
>NZ_CP038444.1|WP_171268917.1|2030752_2031460_+|short-chain-dehydrogenase
MSYLILGSGGLGGALAHELASRGEEWLLAGRQLPKGLDPACYFPLQEVDPLSFDALFTLYDTATLPNVVINTIGLLHDLSHMPERRVEEVTPQWLGESLQANAWPHLALGASLSRLMTFESRLWLCTLSDLAGSLKEAHREPARRYSYRMSKAALNMGSRILAAEWAERFPGAGVITVHPGLMDTPMQQPFRQEIDPALLQDPALVAPQLLDLLASLNQAHSGRFVDLRGQPLPW
>NZ_CP038444.1|WP_042650278.1|2030272_2030680_+|transcriptional-regulator
MEGFAARLQSLIGEGSVSAFARKVGLSEALIRKYLKGAEPGLGKANQIAMGANCSLEWLATGCGYLYRQAEVVDRDALAAAGALVQETLLGQPMPDEEQLVTLLAYYQFLRSHKQADGFLDLARAREFGRHLAEA
>NZ_CP038444.1|WP_171268916.1|2029202_2030102_-|aldo/keto-reductase-family-oxidoreductase
MPVSRLALHHQGPTFSRLIMGYWRLMEWQLSPATLLDLMKYHLDLGVTTIDHADIYGGYQCEEAFGRALRLEPSLRSRMEIVSKCGIALTAKPEHALNHYNTSKGHIVASAEASLQKLGTDHLDLLLIHRPDPLMNADEVAEAFISLEQAGKIKHAGVSNFTPHQFALLQSRLPFPLVTNQLEISPLHQEGTLDGALDQCQQLGIKPMAWSCLGGGRLFNDPAYAPLRAELELIRQELGTQTIEQVVYAWVMMLPSQPLPLIGSGKRERIAAAVAAESIVLSRQQWFRIRKAALGYDVP
>NZ_CP038444.1|WP_081805676.1|2028847_2029126_+|RNA-binding-protein
MKIYVGNLSYRMTADELTNVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAELHGTEIGGRTITVNQAKPKTDAPRGRPQRHR
>NZ_CP038444.1|WP_171268915.1|2028093_2028636_+|hypothetical-protein
MRVSELALQGGVNWLMPPARRFYGVMICLLLASLGTVVAALLLGYPEMGLLPWVGLVFGGIVLVMMVLPRNWQRWRLAELAWDDHHLYLLNGGEDRALALPKAALVGIERDRKVGHDGQWLDFSLDLGLDEETLADAAGLLGLTREGTHEVAPGVYRFGFKRAWHSRRALNKLLAALQPA
>NZ_CP038444.1|WP_171268914.1|2027185_2027929_-|penicillin-insensitive-murein-endopeptidase
MFATALLLTTSALYAEAIGGYAAGCLKNAVALPLTGPGYQVIRSKRLRYYGHPDLIHYLQGLANQTRLAGMPDLYIADLAMARGGPFTSGHRSHQTGLDADIWFRMADRPISQWEQDAPKEWALIDEPSYRMLPGRFGPQQLNLLRLAANKPEVARIFVNPVIKAEVCKRAADEPWVAKLRPWVGHFSHFHVRLRCPANNPDCQPQAPIPPGNGCDAELASWLKDKPQLPKVSMSYRAPALPKRCEG
>NZ_CP038444.1|WP_171268913.1|2026537_2027143_-|LemA-family-protein
MENNKMAISLRHRATQCLLTFTLLLGLTGCGMNNIPTLDEQVKASWGQVENQYQRRTDLIPNLVATVKGYASHEQETLKAVTDARARVGSLQVSDPAQLKAFEAAQDQLSSALSRLMVVVERYPDLKADQQFLTLQAQLEGTENRISVARRDYIEAVRQFNTEIRTFPGVIWSKLLYSDLEAKPTFSAKPGADEAPKVSFQ
>NZ_CP038444.1|WP_171268912.1|2025806_2026541_-|TPM-domain-containing-protein
MTMMLRALLPLLLLWTTTLQAAPAFPPLSGRVVDEAALMSRKQAHQLTQQLAAFEKRSGIQLVVVSIDSLDGETIEEYGYQLGRHWGIGQKGKNNGVLLLIAQDERKVRIEVGYGLEGALPDAIAANIIQTRILPAFKRGDMVAGVVAGSQGIMQALAGEYQPVDNASKEEKQGGPWLFILVVIVMIVLHNLRGGGGGGGRGRRNAAYLVGGFGAGRTGGGFGGGGCFSGGGGSFGGGGASGGW
>NZ_CP038444.1|WP_005327789.1|2034231_2035176_-|LysR-family-transcriptional-regulator
MKYIEEFYLFVKVVQEGGFSHAAAALGMPTGTISRRISQLEEQLGCALLHRSTRKLRLTDEGLRYYERLCTPLAEIEQATGEIQGQETDISGLIRLAAPIALSNTILVDMLADFGLRYPGVQFDISQTNDQAPLCDQDRDLVFFNGELSQTLPNALCLGHIEYGLFASPLYLEKMGIPSHPAQLEEHDLIYCWPHQHWQLSGRDQQTVQIKRTPRLSVNQTQAAVRAARRHLGIVNAPLHYVHPFLQDEQLVAVLPDWQSGKRPFYMLHCQPRFTPLRVKMFADFVEKYSVRYRHHQRDDQFLPAMPLPVASDG
>NZ_CP038444.1|WP_041206904.1|2035253_2035955_-|DUF2982-domain-containing-protein
MKTLHVIPMVRRNGLTLILLGMVITITMIFILFFLREQLLMPVIFLLLAGLMTILVGALKLSEPHFSLSLCQDCLQYHHKYGGWILKWRNIQRIDQPRIHLGWDLVPLPYIGLKIKDYDDFLTLITPRLAVRLLTEQRAVLLQAMSSERPDCLTGGCGAGLLGEGLLEESRFRSSSGQQYEGVIAMLGNRMTRLRDLLGYDLLVPDNSLDRSPVDFVRLLNQYQRESNLIQIN
>NZ_CP038444.1|WP_171269468.1|2036123_2038064_+|EAL-domain-containing-protein
MDVLHTPIWVYDIQRHHIYWANDSALGLWEASSLSELQSRNFSADMAAAIDLLLQRYLGDFQQDRSYNEWWTLSPKGVKKQVYLRLSGIQLAGRQMMMTEAVIDADTLYQESSLATGDTLACLFDNEGCLESGNHHFDMCFGTGISQLTQVFSGCDEAFYTRLSRVGEVVAEGECRTQKGMRWFQYQFRHIQQGARILLTMRDITDRKLEELEHRHLAWHDSLTGLLNRYGLMKSLEAYCGLGGRFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLKQICPRDVELARLGGDEFTALVPLNQASERAQEVADLMLSQMSKPLQLSGVPEVTIGGSIGIAIYPDDADDGDNLITRADMAMYQAKQMGRLRWQRFTPSMQQSLHRKLTLKQFLAKAVGRGELSLRYQPQVDVAQGKLIGFEALLRWYNPVLGHVSPAEFIPLAEEMGLIREIGSWVLATALAQMGEWQRQWQVRVPVSVNLSGFQLSASLPGQVAQQLRESNVEAGLLTLELTETVLMLDMKGCIEILDALSEQGIKIAIDDFGTGYSSLAYLNRLPIDTIKLDRSFVVGLNLPVIRATVAMATSLGLGILAEGVEDEHELAALRAQGCHVFQGFLFSTPMTPEEVAAAGFGIRCKLGHYPLIGA
>NZ_CP038444.1|WP_042650274.1|2038217_2039780_+|AbgT-family-transporter
MSQAAVNERPASPNGWLNRFLNGVEKAGNKLPDPAMLFLYALLIVWVGSWIGSQFSFDLVNPRTGEAVVVNNLLTGAGLAEFLASMVTTFTGFAPLGIVLVAMLGVGVAEQSGFINTGLKKLLKVTPARFLTPMLILVAIVSHTAADAGYVLVIPIGGIIFHAAGRHPLAGIAAAFAGVSGGFAANFLPSGGDALLQGFTQSAAQLLDPDYMVNTLCNIIFTGASSLLIICVGWFVTEKIVEPRLKQVPLNEDLESADEMGRYSAQESRAFNWAGFAMLAAVVLLGLALSPDDSPMRAPDGSLTTFAAPVMKSIVPLIFLLFILPGIVYGFVAGSFKSGKDVIDAMSATMNKMGSYMVMAFFCALFIKAFGDSNLGTLLALSGAEVLHALALPGEVTIVGMILLTASVNLVVGSASAKWALISPILVPMLMAVGISPELTQAAYRVGDSASNIITPLMVFFPLVVVYCQQYVKSTGIGTLVSMMLPYSLAFLVSWTCFLLLYWALGFPLGLQAPYVYPAP
>NZ_CP038444.1|WP_042650273.1|2039847_2040573_+|oxygen-insensitive-NADPH-nitroreductase
MNPTIDLILSHRSIRQFTPEPISASQLDQILSAAQSASSSSFLQANSIIRVTDKGLRATLAELAGHQAYVAEAAEFLLFCADYQRHSQIVPEAQTGFVEQLMIGAIDGALMAQNTLLAAQSLGLGGVYIGGIRNNPAAVSELLGLPHQVIPLFGLCLGHPAQQPEQKPRLPRALVVHENRYPETLDRALLAQYDSQIHDYYLARSSNNKVQTWSGQIKAILGKEARPFMLGFLQSKGFCLK
>NZ_CP038444.1|WP_042650272.1|2040732_2041497_+|hypothetical-protein
MILTLILLSIGALLFLVIAYNVVQQYKQKAEADKRQAIARHKAVADETEEVLLNVNLVPFSKNMVLLLQHRILDAYRAIVQVMPNPQVKQRIIDVQTQIKNVQENYSSQDEGHFKTPESDRQAIQMLQLAKKMRAVLRVEHNKGKIDPQGFAQEDRRLELMQLKINIANLIKRAMDAQIQGQYGTCRQLYTKGLGALANVSDKDPYLLAREEDMRQGMRQLEEHLQQHSEKELQNIKDKEADELDVLFQPKKKW
>NZ_CP038444.1|WP_042650271.1|2041490_2042045_+|VOC-family-protein
MVIMSHPLDTTLGPMAPFVCQLLTEMHALMGECEAPQVDHLCYRAATLPEYLALKETLARHGVLLVEGMIGGRPIATYRLHQPVCWQQITVPCIELAAPKAGRAHQAGLEHIELVVPSLPALVAAHPGLAFKTANMGDGRNPDVGLMLPSGQIKFHLRPLSEVIDEELHTGAVVPVPADYYDGL
>NZ_CP038444.1|WP_043133480.1|2042057_2043278_-|MFS-transporter
MIEVGSREWIRATLALSLGSFLVFLNLYQTHPLLPLLAEVFSVSSLSAGWTLAGCTAGLAGSLLICARMADRFGRRRIMLWTLTCAILLSLCIPWVTRFDLLVCLRVLQGALLAGLPATAIAYMGEEFSKRALLSAVGVYIAANSLGGIAGRVVGGLLAGWFGDWQHTFLGIGFISLALLPLVIWLLPAQTRFVAVEAAPGQLRRAIQSHLGNPLLLGAYLIGGLNFMVFLNQYSYLTFLLAKAPFSLPTQWLGMLFLTYLTGTLASSLSGRCAHRFGAQRLLLAGIALMALGSLALLQGTLAAIIGGLLISSFGFFLAHACASAWVGQHVEHNRALASSLYLVGYYLGASLGGLYLHPFWERGGLWGLVLGIELVLCVTAALSLWLGHLKGRTAPPLSCHASSRQ
>NZ_CP038444.1|WP_171268918.1|2043371_2044298_+|LysR-family-transcriptional-regulator
MDLKQLGYLLAVRDAGSFTKAAQGLHVAQPAVSMAIAKLEQQLDLRLFDRQDRSVRLTPEGEVLCRHAERLLLQMHQAQAEMAELKGLERGEVRIGIPYMMGSYYFPPILMAFKHRYPGLKIRVEEAGTRELLSRMVDGSLDLAILITSDLPPALEGAQLLREEMLMVVGEEHPLRGASAVSLPQFFNQELAMFRRGFYHREHMEALAQGLGIEPNIGFESNLIPLLKAVVRQGFAVTTFLRMALEEETTLSGIPFAPPIFLDLCVAWRRGDPLSMANRALRDFLLAQAKPEPTPDGALRDNNLRDNR
>NZ_CP038444.1|WP_005327814.1|2044369_2044963_-|GTP-cyclohydrolase-II
MSSITLVAKSKLPTPWGIFTLVGFQETGTGKDHAALVMGDIADGEPVLGRIHSECLTGDALFSLRCDCGFQLQAAMEKIAKAGRGVLLYVRQEGRGIGLLNKIRAYHLQDQGADTVEANVALGFAADMRDYTICADMLKALEVKSLRLMTNNPRKLKAMESFGIPVAERVPLQEGRNPHNEFYLSTKANKLDHLFKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP038444_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038444_6

2852048-2852181

Orphan

Consensus_repeat	Method
CAATAAACATTTAAGAGACGGGAGCCGCAGATCCTTGCAACACCTTCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038444_6

>merge|NZ_CP038444|6|2852048-2852181|CRISPRCasFinder
CAATAAACATTTAAGAGACGGGAGCCGCAGATCCTTGCAACACCTTCCGGGCCGACCTTCCGGGCCGACGCATTACCCTGAGAGCAATAAACATTTAAGAGACGGGGGCCGCAGATCCTTGCAACACCTTCCGG

>NZ_CP038444|6|6|2852048-2852181|CRISPRCasFinder
CAATAAACATTTAAGAGACGGGAGCCGCAGATCCTTGCAACACCTTCCGG	GCCGACCTTCCGGGCCGACGCATTACCCTGAGAG
CAATAAACATTTAAGAGACGGGGGCCGCAGATCCTTGCAACACCTTCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038444.1\|WP_171268989.1\|2843167_2843704_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP038444.1\|WP_042648301.1\|2849782_2852044_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|293739
NZ_CP038444.1\|WP_148304685.1\|2846704_2846884_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038444.1\|WP_042649286.1\|2864271_2866074_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|183831
NZ_CP038444.1\|WP_005327561.1\|2844317_2844950_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|234604
NZ_CP038444.1\|WP_042649148.1\|2854875_2855193_-\|heavy-metal-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|179490
NZ_CP038444.1\|WP_042648302.1\|2848437_2849532_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270700
NZ_CP038444.1\|WP_005331594.1\|2856774_2857314_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|179896
NZ_CP038444.1\|WP_042648304.1\|2842790_2843162_+\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP038444.1\|WP_041206764.1\|2852954_2854292_+\|IS4-like-element-ISAeme15-family-transposase	unknown	unknown	gnl\|CDD\|379017
NZ_CP038444.1\|WP_042648311.1\|2845202_2846531_+\|amino-acid-N-acetyltransferase	unknown	unknown	gnl\|CDD\|235386
NZ_CP038444.1\|WP_042649151.1\|2859525_2861304_-\|M3-family-oligoendopeptidase	unknown	unknown	gnl\|CDD\|341070
NZ_CP038444.1\|WP_042648312.1\|2843715_2844051_+\|DUF3802-family-protein	unknown	unknown	gnl\|CDD\|315053
NZ_CP038444.1\|WP_171268990.1\|2862582_2863185_+\|DUF924-domain-containing-protein	unknown	unknown	gnl\|CDD\|377592
NZ_CP038444.1\|WP_042649150.1\|2857524_2859333_-\|M3-family-oligoendopeptidase	unknown	unknown	gnl\|CDD\|341070
NZ_CP038444.1\|WP_042649149.1\|2855407_2856700_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP038444.1\|WP_005327565.1\|2846948_2848301_+\|lysine-sensitive-aspartokinase-3	unknown	unknown	gnl\|CDD\|236376
NZ_CP038444.1\|WP_042649152.1\|2861477_2862392_-\|DUF808-domain-containing-protein	unknown	unknown	gnl\|CDD\|377542
NZ_CP038444.1\|WP_042648305.1\|2841872_2842682_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP038444.1\|WP_171268991.1\|2863250_2864165_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275

Protein	Function_ID	Function_description	E-value
NZ_CP038444.1\|WP_171268989.1\|2843167_2843704_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.98083e-19
NZ_CP038444.1\|WP_042648301.1\|2849782_2852044_+\|LTA-synthase-family-protein	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	2.55314e-41
NZ_CP038444.1\|WP_042649286.1\|2864271_2866074_-\|protein-translocase-subunit-SecD	gnl\|CDD\|183831	PRK12933, secD, protein translocase subunit SecD.	0
NZ_CP038444.1\|WP_005327561.1\|2844317_2844950_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|234604	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA.	5.83012e-138
NZ_CP038444.1\|WP_042649148.1\|2854875_2855193_-\|heavy-metal-binding-domain-containing-protein	gnl\|CDD\|179490	PRK02877, PRK02877, hypothetical protein; Provisional.	1.82757e-59
NZ_CP038444.1\|WP_042648302.1\|2848437_2849532_-\|hypothetical-protein	gnl\|CDD\|270700	cd05151, ChoK-like, Choline Kinase and similar proteins. This subfamily is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate and displays negligible activity towards N-methylated derivatives of Etn. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	0.00185796
NZ_CP038444.1\|WP_005331594.1\|2856774_2857314_-\|alpha/beta-hydrolase	gnl\|CDD\|179896	PRK04940, PRK04940, hypothetical protein; Provisional.	6.83008e-139
NZ_CP038444.1\|WP_042648304.1\|2842790_2843162_+\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	7.60418e-39
NZ_CP038444.1\|WP_041206764.1\|2852954_2854292_+\|IS4-like-element-ISAeme15-family-transposase	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	5.91078e-32
NZ_CP038444.1\|WP_042648311.1\|2845202_2846531_+\|amino-acid-N-acetyltransferase	gnl\|CDD\|235386	PRK05279, PRK05279, N-acetylglutamate synthase; Validated.	0
NZ_CP038444.1\|WP_042649151.1\|2859525_2861304_-\|M3-family-oligoendopeptidase	gnl\|CDD\|341070	cd09607, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	0
NZ_CP038444.1\|WP_042648312.1\|2843715_2844051_+\|DUF3802-family-protein	gnl\|CDD\|315053	pfam12290, DUF3802, Protein of unknown function (DUF3802). This family of proteins is found in bacteria. Proteins in this family are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif.	1.05875e-55
NZ_CP038444.1\|WP_171268990.1\|2862582_2863185_+\|DUF924-domain-containing-protein	gnl\|CDD\|377592	pfam06041, DUF924, Bacterial protein of unknown function (DUF924). This family consists of several hypothetical bacterial proteins of unknown function. Structurally, this family resembles TPR-like repeats.	1.29673e-84
NZ_CP038444.1\|WP_042649150.1\|2857524_2859333_-\|M3-family-oligoendopeptidase	gnl\|CDD\|341070	cd09607, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	0
NZ_CP038444.1\|WP_042649149.1\|2855407_2856700_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	5.00496e-161
NZ_CP038444.1\|WP_005327565.1\|2846948_2848301_+\|lysine-sensitive-aspartokinase-3	gnl\|CDD\|236376	PRK09084, PRK09084, aspartate kinase III; Validated.	0
NZ_CP038444.1\|WP_042649152.1\|2861477_2862392_-\|DUF808-domain-containing-protein	gnl\|CDD\|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	7.0069e-143
NZ_CP038444.1\|WP_042648305.1\|2841872_2842682_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	5.25096e-28
NZ_CP038444.1\|WP_171268991.1\|2863250_2864165_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	1.98879e-92

>NZ_CP038444.1|WP_042648301.1|2849782_2852044_+|LTA-synthase-family-protein
MNAPVCGHSPSLSQSLAGWLFGLLIALLLLTLALPLLNPAGWLGRAQPLILGPADQPIATLSRHSLLYKSDSRGLYLVVRSQWQLLKPLQEGDKVRVELLNDKGIRIDQLSQAVEKRQKCRQERCTLDLNSALRAPDDALDSRYQLRIGLLLADRPESAEYSQILQTLPERCFNLSYLMISLLLVLLMSAAVLRAMLPRLRRSYRSRIVGSLLLGNLTFVLLHGFVVFKLGEFLFWSGFRPEHYYLAWGSMVLGWSLCALAGFNLYMGLVFTALSGIGLLANFMKIAIYGVPLGGDDLGNLLALLHILLDQHPVLPVLAVLGLLFLCWRFALSRWILRTAAATVAFFALCVFATQTGNKLLGANIRYVDRAVNYHRDIIRAGPGLYLFNLVDEMLQSGNVFRYPLQINERTPELSQPARGQPPRFDLVIVLQYESLWLDWQGKICAPAPTLSLPAGVAQWHKTIHSPTTGGMTVLAEFEMNTGLPAGLLKQGVVPYYYLSAQVPGLAQSAKQSGYQTLFAHPYVEKFWGRAKAIPALGYEERWFDTRFTTLEHKGLYISDDALIDHLIKRSEQDDKPLFAYAVTMQGHGPFDGDRYRAQQIDKACPDQSPAERQLLNTYYTGVVDAMASLERLLKTLDQSGKRYLVVAFGDHQPFLMSAGKGIHGAKPPRDAAYQIPMMAFTRADDPLNLATQFAPVRQLYQMGQATRALLAGDLAPIEDKPLLHPVLGEEKGFDPSPLVPQIRASFRADALP
>NZ_CP038444.1|WP_042648302.1|2848437_2849532_-|hypothetical-protein
MNPKVAARQARLLQMLENNDEIRIGRERDCPLPLAQLLRLTEDHPDVVRVYGHGLTAEVFHLKVEGHHWCLKRCRPDSLVANVDGKTAFLTELERRREIESLRELHPTILSNVVCTSFGSARTGVLVSPWLRGEPVRRLNERNLAQMLAVEAELARWGWFDWDPSPGNLLDDGQQISVFDFGYMWPFDPLHEFNSNGLTDPEFHVPERLETRTLSGLWLDDADPLPLFRHWRGLCLAWAKGELQYLSREGASAPVLARMQGLVGEWSAALASDEALAANWWRDMYRSHRLDIQDDLSGKSCGPMTLRRLDWLEQAVRDHFPALAENLGPDEAGLSQAALLQRLGGLREQIRANLLPTPASQSMG
>NZ_CP038444.1|WP_005327565.1|2846948_2848301_+|lysine-sensitive-aspartokinase-3
MNPINVAKFGGTSVADAAAMNHCADVVLANPATRVVVLSASAGVTNLLVSLAQGELDEAGQDAQLARLTGIQQAILTALGNPGEVSALIHAQLGDIRTMARQACQHTDAELADRLIACGELMSTRLFTELLHQRGIKACWQDARQLLRTDSRFGKATVDLAATRTLCQATLGPLLGDSLVITQGFIGADADGRTTTLGRGGSDYSAALLAEALDAGSIEIWTDVPGIYTTDPRLVTRARPIPEISFVEAAEMATFGAKVLHPATLQPALRQDIPVFVGSARDPAAGGTWIRASTETCPLFRAVALRRQQVLVTLHSLNMFHAYGFLAEVFGILARHRISVDLITTSEVSVSLTLDHTGSQSNGEPILGDKVLAELGQLCKVEVETDFALVALIGNRMSEAAGVGSRVFDAIREHNIRMICYGASAHNLCFLVKESEAGNIVNRLHQELLD
>NZ_CP038444.1|WP_148304685.1|2846704_2846884_-|hypothetical-protein
MAGIAKDPGQKHSIRGAHPTRILLDACGMHTTDDNPGDSAPAADVEVYQLPHSSRRCSP
>NZ_CP038444.1|WP_042648311.1|2845202_2846531_+|amino-acid-N-acetyltransferase
MREREPSLVHAFRQSTPYVNVHRGATFVLMMGGEAICHPNFANIVSDIALLQTLGIRLVLVFGSRPQNDEALARAGIEAQYHRRIRVTDDKSFAIIKQVCGGLQYDITAQLSMGLANTPMQGARISVVSGNFVTAQPLGVEDGIDYCHSGRVRRIDVEGITRQLDQHGLVLISPIGCSVTGESFNLSSEEVARRVAVDLKADKLICFSSTQGVMNRQGEAISELFPEQAEELLVELEQAGEEMSGTARYLRAAIASCRGGVPRSHLVSYQDDGAMLQELFSREGLGTQIVRESAERARAATIEDIGGILDLIRPLEEEGILVRRSREQLEMEIDKFTIIERDGLIIGCAALYCFMEEAMAEMACVAIHPEYRNSNRGDQLIAKVAERAKRLGIRRLFVLTTRSIHWFRERGFDPLEVEDLPVARQRLYNWQRRSKVLSKTIS
>NZ_CP038444.1|WP_005327561.1|2844317_2844950_-|peptide-methionine-(S)-S-oxide-reductase-MsrA
MEQIISPAEALPGRREALAIGQQHAVNGHPTQGPWPEGMELAWFGMGCFWGVERLFWQQPGVYSTAAGYQGGLTPNPTYKEVCSGLTGHAETVQVVFDPRVISYGELLKLFWEQHDPAQGMRQGGDIGTQYRSVIFYGDDSQEAIAQQSLAAYQQAMMASGDARPITTRILPLAPFYYAEDYHQQYLEKNPEGYCGLGGIGVCLPPSLNR
>NZ_CP038444.1|WP_042648312.1|2843715_2844051_+|DUF3802-family-protein
MVVESDGYIALIEYLVESLGLFESQQQGTGSETIEDLVSNRVAGNLMAICEQNPQLDPKVRFMIMQEADAVVADLEEVLSAVWLRAPTPAQHAFLDEFISLIKNLFDSTIR
>NZ_CP038444.1|WP_171268989.1|2843167_2843704_+|GNAT-family-N-acetyltransferase
MPQTQKTAPARIRPLREQHIPDLLTLFEQSVRRMGPEHYSPQQVEQWALGARHPGLVSQLREHHGWVIEQQGIPLGFVTLSDDGHLSLLYVSPDHPRQGLGGLLLAQALQAASQLGLHSLTTEASAFSLALFLRHGFEQAGLETVERGGVSFVRHRLYCSLPSQGQPLKYPPFPQSNE
>NZ_CP038444.1|WP_042648304.1|2842790_2843162_+|MmcQ/YjbR-family-DNA-binding-protein
MSLVSLREFLLSLPGATEDTPFGPEFLVYRIAGKMFALVNWQAEPLTINLKCEPELALLLREIHPEVKPGWHMNKQHWNTVTLVEDLDTDLWQGWIEHSYERVVAGLPRARRPQAPTLSGKAG
>NZ_CP038444.1|WP_042648305.1|2841872_2842682_-|alpha/beta-fold-hydrolase
MLYHKTFELGPDRDWVVFVHGAGGSSSIWFKQLRAYREHFNVLLLDLRGHGQSNQLQQVVKGHYSFRAVTEDILRLLDHLRIPRAHFVGISLGTILIRHLAELCPERVKSMVLGGAILRLDIRSRVLVQLGRVGQHILPYMWLYRLFAFIIMPRQHHQESRNLFVREARKLCQKEFKRWFRLATEVNPLMRYFKERALPIPTLYVMGEEDHMFLAPVREQVARDPYSRLEIIENCGHVCNVEQPDHFNRQSLAFLSTQTSVLPATPLEA
>NZ_CP038444.1|WP_041206764.1|2852954_2854292_+|IS4-like-element-ISAeme15-family-transposase
MSIANDLNDVVEASGDMLARLAIFADHIPDEWITAAAALSEKATIRRRRLPSDMVLWLVVGMAFFRNEPISEVARRLNICAEGLANDALLADSALSQARQRLGKQPLEWLFKQCADVWGRERYPQDQWHGLQVFAIDGALFRTQDMPELRAHFGSGNTSTNRQTPYPMLRLVTLMNVRSHVIANAAISPYRKGEIPLASEFIHSLPDKSVTLLDKGFFGADLLLRIQAEDTDRHWLIPERKGLVYTELERYGDGDRLLQMTVSPQARKKNPALPTHWQVRAVTYEVAGKEKTVFTSLPVARFSAAQVATLYHERWEIELGYRDIKSAMQHNAITLRSKKVDLVYQELWGLLLGYNLVRREASQAAVAHQRAPNEVSFKFACQFIANQMAVMAGALSPAHTPRRLAELRGCIGVMFIEKRPRPSRPRAVKISKTRFPVNRNAAPLK
>NZ_CP038444.1|WP_042649148.1|2854875_2855193_-|heavy-metal-binding-domain-containing-protein
MILSTTPTLEGKTIREYRGIVVGEAILGANIFKDLFAGIRDIIGGRSGAYEKELARAREIAFEELRERAAAQGANAVVGIDIDYEVVGQNGSMLMVSISGTAVVV
>NZ_CP038444.1|WP_042649149.1|2855407_2856700_-|NAD(P)/FAD-dependent-oxidoreductase
MMNIVVVGGGAGGLELATSLGRKLGKKNKARITLVDRNRTHLWKPLLHEVATGSMDAGIDALSYQSHAKNHGFEFQLGSLTDIKRDEKRIVLAPIHDDSGALVVNERELAYDVLVMAIGSVSNDFNTKGIKDHCIFLDSPSQAHRFYNSMMNRFLQFATEYQPGDKVKIAIVGGGATGVELSAELYNAVEQLYAYGFKNLTTDSLKVTLVEAGPRILPALPERISGSAHQELVKLGVDVRTATMITEATAEGLHTKDGELIEADLMVWAAGIKAPDFMKEIAGLETNRINQLVVKETLQTTRDENIFVIGDCAACPQPDGKFVPPRAQSAHQMATQAFKNILAKMNGGEMKPYLYHDHGSLVSLSRFSTVGSLMGNLMRGSMMVEGYIARIVYISLYRMHQVALHGYIKTGLIMLVGRINRVLRPSMKLH
>NZ_CP038444.1|WP_005331594.1|2856774_2857314_-|alpha/beta-hydrolase
MIIYLHGFDATSPGNHEKVLQLQFIDDDVRFVHYSTVHPRHDMSHLLKEVKKQLDMSTDPKPLICGVGLGGYWSERIGFLCGIKQVVFNPNLHPEENMQGKIDRPEEYEDIGTKCVTEFRNKNSGNCLCILSVQDEIRDNRDTERELKNYYDIVWDERETHKFKNISHHLQRMKAFKEA
>NZ_CP038444.1|WP_042649150.1|2857524_2859333_-|M3-family-oligoendopeptidase
MQQRVYPQQWQNQHIYPSLDSCVLEADMSLARASLAELSGFIEGLAGVQGNQPARQDFLREVRLRARRIREIGWNIAVLAACTGSQDARDPLAKQLASRARALNADLFKTLAPIEDLMLGLPEAEFEQLMQDPLLGEEEYRLRHERRLQDQRLPVEAEQLVIGLGTDGLHAWGNLYNDLVGKIRLVIDGREMGLAEASNLLSSPDGALRKEAFDAISAGWEGEQETVAAILNALNGWRLELSRQRGKVRTLDALDLSCHQSHIERATLDTLMQETWQARHLGQRALGLMARRLGIEELGPEDLFAPPPASSHRSIPFEEAIEIIALAFTGFDPEMGEFARMMAERGWIDAAPTPNRRTGAYCTKFADPVEPRVFITYAGTMDNVITLAHELGHAWHNWLIRDLPMSQRSYPMTLAETASIFAETLVRSALFEQAQSAEERQAIAWAEADGAATFLVNIPARFDFEQALVAEREQGYVSSARLKALTDEAWGRWYEESLGRYHPMFWAAKAHFSIAGFGFYNYPYLFGYLFSLGVYQQLISRQAAGEQDVAQAYRALLRDTGRMSAEELVVKHLGQDIREAAFWQGSLALVAAAVDRFEQTLS
>NZ_CP038444.1|WP_042649151.1|2859525_2861304_-|M3-family-oligoendopeptidase
MTNTLWQDDHIYAAPDCPAIDADFQRAAEALTEITTLLAALPETRDINPLRHLLRAIRRQANAVRRQAWNSQTFAYNRLSRNGRDEAARVLLSRGQQLQARLAQLVKPVALFWLNAPEDQVRALLQDPELFELAYLIHHDRRLQDQVLSLESEQLIEGLAVDGLQAWGDLYNSLVARLRPEVAGEPMGLAQADNLLSHPDRARRASAWHGIQAAWQAEQETVAAILNAINGWRNELATQRGKGRLLDALDLSCHQGHLDRATLETLMAQAEAHKELGRRALRAMAGAQGITDFAPWDLYAPPPAAAQIRLGFGQALTLVAEAFAAFDPEMGAFARMMADRGWIDAAPSDNRRSGAYCTEYADPAEPRVFLTFEGTMDNVITLAHELGHAWHSWLLRDLPLEQRDYPMTLAETASLFAETLVRDALLARSQTREQRLDIAWMDGERVASLLLDIPSRFHFERALVAGRTEGYLGAGQLRAMMKSAKQQWYGDTLSQYDELFWASKSHFSIAEFGFYNYPYLFGYLFSLGLYAQKARVGADFVPAYRALLADTGRMSAESLVEKHLGVDIREPAFWEESLRYVEEAVERLERLV
>NZ_CP038444.1|WP_042649152.1|2861477_2862392_-|DUF808-domain-containing-protein
MAGASLLTLLDDIASVLDDVALMTKVAAKKTAGVLGDDLALNAEQVSGVRAERELPVVWKVAKGSFRNKLILVPAAIAISALIPWLITPLLMLGGAYLCFEGAEKLAHKFLPHDSGETASSVEALPDDLEAFEQQKVKGAIRTDFILSAEIIVIALGTVQGSSLGLQIAVVAGIALLMTVGVYGLVGLIVKLDDIGLHLLQKPDAGALRRAVGRGLLVTAPRLMHLLALVGTIAMFMVGGGILVHGWPFAHHLIEGVAASLAPLTGGAVLAAVTPTLLSALVGVVAGLLLVLAMTLVGKLTPAK
>NZ_CP038444.1|WP_171268990.1|2862582_2863185_+|DUF924-domain-containing-protein
MQPWQPLLDFWFGDDSGDAPRAARQAPLWWGKSSETDALLAHRFGELAQGAAEGELAHWAEVPVGRLALILLLDQLPRNIHRGTPAAFAQDAKARDLCLKGLSLGADKALSPLARVFFYLPLEHAESREQQARSVALFEALATEQAGGPARETFEGFADFARRHQVIVQRFGRFPHRNAILGRTSTPEEAEFLQQPGSGF
>NZ_CP038444.1|WP_171268991.1|2863250_2864165_-|protein-translocase-subunit-SecF
MLRMIIAMGLTRWRYIGMWASALLTVASIAVLAINGLSLGLDFTGGILLEFRIQTLKEAHELNALLSAPLAGAVELHGAGVPGEWLIKLPPHELPWAAEDLATMLGQQLALPVELLRTTIVGPQVGAELFQQGMLAVLVASLAISAYLAVRFEWRQAIGILVSVLHDGLVALGLLALFNIEFDLNVIAGLMAVIGYSLNDSIVISDRLRDLLGSRTQMGIHECSDVAIKATFSRTMITSGTTLFTVGALLLFGGDALFGFSFTLFAGILVGTISSITVASTVQELLGLSPQAYQKKEEELVEAA
>NZ_CP038444.1|WP_042649286.1|2864271_2866074_-|protein-translocase-subunit-SecD
MRKKSHTILNRMSLWQYALLLLMLVTFAFYSLPTFFGEQPSLGLHGQSRLSGAQQRLLQEHQIAPQLQIEQKERALLVFATQAEQQRAKQLLEQQGVDSAALTLEFHSNAPTWISQLGADPIKLGLDLRGGSQLLIGVDVDFVIDNQTKNLVDTLRTRFREANLRGASVMRTAQGSVAVTLPDVAGQEGWLNVIKESAGTRQDQWTLSRSGNELKLVLSDAERTLLVNNAVTQNLSILKKRINELGIVEASVQRQGQDGIRIELPGVHNPKQAKEVIGATASLAFYEAKADSRFFMADRNGQAVGLARNPVLSGEHIVDARANMGEMGQPQVNIVLDTLGGSKMNQFSRQHVGKPMATVFTEYKTNAEGRLRAKSEVINVATIQTALGNQFRITGIGSLPEAQELAMLLRAGALTAPLKILEERSIGPTLGLQNIEAGFTALAFGMAGMMLFMMAWYRKFGWVAITALIGNLLMQVGMLAVLPGAVLTLPGIAGLVLTVGMAVDTHVLIFERIKDRLREGGSLANAIDFGYRSAFRTIFDANITTLICAVVLYAIGSGPLQGFSITLILGLISSMVTGIWGTRAIINPLWGNSRAKLLRV

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Crispr_ID: NZ_CP038444_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038444_7

4474704-4474804

Orphan

Consensus_repeat	Method
GCATCAACTCCAGACCAAATCGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038444_7

>merge|NZ_CP038444|7|4474704-4474804|CRISPRCasFinder
GCATCAACTCCAGACCAAATCGTCCGGGTTGGCCAGGGTGATAACTGTACGCAACACTCTCATCGGTACCGACCTGGCATCAACTCCAGACTAAATCGTCC

>NZ_CP038444|7|7|4474704-4474804|CRISPRCasFinder
GCATCAACTCCAGACCAAATCGTCC	GGGTTGGCCAGGGTGATAACTGTACGCAACACTCTCATCGGTACCGACCTG
GCATCAACTCCAGACTAAATCGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038444.1\|WP_171269332.1\|4467338_4467743_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341392
NZ_CP038444.1\|WP_043132833.1\|4469219_4469681_-\|transcriptional-regulator-AsnC	unknown	unknown	gnl\|CDD\|183019
NZ_CP038444.1\|WP_171269334.1\|4471113_4473687_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP038444.1\|WP_171269341.1\|4487150_4487663_+\|lipocalin-family-protein	unknown	unknown	gnl\|CDD\|182489
NZ_CP038444.1\|WP_171269339.1\|4484924_4486088_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|185092
NZ_CP038444.1\|WP_041207111.1\|4475879_4476635_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP038444.1\|WP_041206565.1\|4487717_4489607_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP038444.1\|WP_171269331.1\|4466504_4467209_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180586
NZ_CP038444.1\|WP_106885551.1\|4465660_4465753_-\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP038444.1\|WP_050504434.1\|4465878_4466427_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|376515
NZ_CP038444.1\|WP_171269337.1\|4476834_4478163_-\|CoA-disulfide-reductase	unknown	unknown	gnl\|CDD\|181958
NZ_CP038444.1\|WP_171269333.1\|4468359_4469124_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP038444.1\|WP_041206563.1\|4481395_4482880_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|236520
NZ_CP038444.1\|WP_171269335.1\|4473859_4474597_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP038444.1\|WP_171269340.1\|4486231_4487134_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_CP038444.1\|WP_171269338.1\|4482891_4484418_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|236507
NZ_CP038444.1\|WP_043132834.1\|4469834_4470827_+\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|235456
NZ_CP038444.1\|WP_041206559.1\|4478235_4479636_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP038444.1\|WP_041206561.1\|4479792_4481085_-\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP038444.1\|WP_161507671.1\|4467739_4468276_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227700

Protein	Function_ID	Function_description	E-value
NZ_CP038444.1\|WP_171269332.1\|4467338_4467743_+\|CBS-domain-containing-protein	gnl\|CDD\|341392	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.11684e-53
NZ_CP038444.1\|WP_043132833.1\|4469219_4469681_-\|transcriptional-regulator-AsnC	gnl\|CDD\|183019	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional.	5.63656e-111
NZ_CP038444.1\|WP_171269334.1\|4471113_4473687_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP038444.1\|WP_171269341.1\|4487150_4487663_+\|lipocalin-family-protein	gnl\|CDD\|182489	PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional.	1.60292e-82
NZ_CP038444.1\|WP_171269339.1\|4484924_4486088_-\|alcohol-dehydrogenase	gnl\|CDD\|185092	PRK15138, PRK15138, alcohol dehydrogenase.	0
NZ_CP038444.1\|WP_041207111.1\|4475879_4476635_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	2.30836e-98
NZ_CP038444.1\|WP_041206565.1\|4487717_4489607_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	5.25781e-71
NZ_CP038444.1\|WP_171269331.1\|4466504_4467209_-\|SDR-family-oxidoreductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	1.38114e-71
NZ_CP038444.1\|WP_050504434.1\|4465878_4466427_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|376515	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).	1.33555e-21
NZ_CP038444.1\|WP_171269337.1\|4476834_4478163_-\|CoA-disulfide-reductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	0
NZ_CP038444.1\|WP_171269333.1\|4468359_4469124_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	9.73627e-24
NZ_CP038444.1\|WP_041206563.1\|4481395_4482880_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta	gnl\|CDD\|236520	PRK09444, pntB, Re/Si-specific NAD(P)(+) transhydrogenase subunit beta.	0
NZ_CP038444.1\|WP_171269335.1\|4473859_4474597_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	2.23702e-120
NZ_CP038444.1\|WP_171269340.1\|4486231_4487134_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	1.10527e-49
NZ_CP038444.1\|WP_171269338.1\|4482891_4484418_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	gnl\|CDD\|236507	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha.	0
NZ_CP038444.1\|WP_043132834.1\|4469834_4470827_+\|aspartate--ammonia-ligase	gnl\|CDD\|235456	PRK05425, PRK05425, asparagine synthetase AsnA; Provisional.	0
NZ_CP038444.1\|WP_041206559.1\|4478235_4479636_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP038444.1\|WP_041206561.1\|4479792_4481085_-\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	3.88542e-137
NZ_CP038444.1\|WP_161507671.1\|4467739_4468276_-\|hypothetical-protein	gnl\|CDD\|227700	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown].	4.30823e-29

>NZ_CP038444.1|WP_171269335.1|4473859_4474597_-|peptidoglycan-editing-factor-PgeF
MNWIEPDWPAPGNVRALSTTRDGGLSEGVFAGLNLGAHVGDEPARVEANRARLQQAAQIPGPLNWLNQVHGTAVHFVSDQYDVAPDADAACAHEAGQACIVMTADCLPVLFCDRAGTRVAAAHAGWRGLKEGVLEGSIAAMGCEPGEILAWLGPAIGPTAFEVGGEVREAFMAEQSEAAAAFVSSSNESKWLADIYQLARLRLARAGVNAVYGGDYCTFSDSEQFYSYRRNGQTGRIASIIWLAP
>NZ_CP038444.1|WP_171269334.1|4471113_4473687_-|ATP-dependent-chaperone-ClpB
MRLDRLTSKFQVAISDAQSLALGRDHQFIEPVHLMTALLNQDGGSIRPLLTLTGMDINTLRSRLGEELDRLPKVSGVEGDVQLSNGLGRLLNVCDKLAQQRKDQFISSELFVLAALDEKGNLGELLRAQGLTKEKLEAAIDKVRGGKKIDDANAEENRQALEKYTIDLTERAELGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGAPGVGKTAIVEGLAQRIINGEVPEGLKNKRVLSLDMGALVAGAKYRGEFEERLKAVLSDLAKEEGNVILFVDELHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLDEYRQYVEKDAALERRFQKVLVEEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAQLSHRYIADRQLPDKAIDLIDEAAASIRLQIDSKPESLDRLERRIIQLKLEQQALMKEDDDASRKRLDLLNHELAEKEREYNELEEVWKAEKAALAGTQHIKAALEQARQDLEVARRAGDLGRMSELQYGRIPELEKQLDLATQAEMQETSLLRNRVTDVEIADVLARWTGIPVARMLEGERGKLLRMEDQLHSRVIGQEEAVDAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAEFLFDTQDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQEHYAEKDYEEMKALLMELLTRSFRPEFINRIDETVVFHPLGEDHIKSIARIQLKSLMGRLESQGFEVEVSEELLTKLVHAGFDPVYGARPLKRAIQQKVENPLAQALLSGRVIPGKKLLLGADSNGLTMTQ
>NZ_CP038444.1|WP_043132834.1|4469834_4470827_+|aspartate--ammonia-ligase
MKQHYIRSQQQISFVKEMFSRQLAQQLGLMEVQAPILSRVGDGTQDNLSGHENAVQVKVKTLPEHSFEVVHSLAKWKRQTLGRFGFGPGEGIYTHMKALRPDEDRLTPIHSVYVDQWDWEKVMPGERRDLAYLQETVRGIWAAIKATERAVCAEHALTPFLPSEIQFLHSEELLTRYPDLDAKGRERAIAKELGAVFLIGIGGALSHGERHDVRAPDYDDWSSESELGLAGLNGDILVWNPVLEDSFEISSMGIRVDAEALRRQLAITGDEDRLQYDWHQDLLAARMPQTIGGGIGQSRLAMLLLQKEHIGQVQVGVWPSEMKAAIPGML
>NZ_CP038444.1|WP_043132833.1|4469219_4469681_-|transcriptional-regulator-AsnC
MSENYRIDNLDQAILTALMDNARLPYAELAKQLAVSPGTIHVRVEKMKQAGIIEGTRVQVNAKKLGYDVCCFIGINLKSAKDYPSALAKLQALDEVVEAYYTTGHYSIFMKVMTRSIDELQTVLIHKIQTIDEIQSTETLISLQNPILRDVKP
>NZ_CP038444.1|WP_171269333.1|4468359_4469124_+|transporter-substrate-binding-domain-containing-protein
MRSLLVLCLLLPCWLSARELVIGGILEPPLKWLDHSGQPRGLDVDLVTTIFGGLKVPIRIELLDSGARLTRNAEGGVYDLLLSHSYKPERESYLLYPEQAHIRHSWHFFVRKDDLGKIRYRTLADLKPWRIGVTKDFSYTPELTAAMADPAYRVQVIPINQLQLRKLIAGRIDVVPMSLVTAFAQIREEGLEGKLDYLPKPLKSSPYYHVWCKARADADTPALMAAYDAELLHMKRDGRLKALYDKYGIPYLEP
>NZ_CP038444.1|WP_161507671.1|4467739_4468276_-|hypothetical-protein
MANPEIESELDGIDRLSVCLYRLGLSLTALLLLCRGAGVLGWLVPLSPSQWLTMLVVASGLCGFCLHLYDKRVRFLLQGLAWGGLMLAACGAPAILVLGAALATLCGLAFKEQFCFAIPGIRLLPLLLPLLWLLEWIRVAWAAALVALASGLLLGLLSLAKWRMPLHFDIGDRGRYQL
>NZ_CP038444.1|WP_171269332.1|4467338_4467743_+|CBS-domain-containing-protein
MLQIRDHMSRLTHSLSPQLGLAEALDRLHQADSSGLPVLDDQKRLIGFLSEQDCIPSLLTGSYHCDSRTQVEDLMSRTPLFVSPDDSILDLARQMTGAKPKIYPVREGDKVVGIINRRQVMQALNAQMKQCQAT
>NZ_CP038444.1|WP_171269331.1|4466504_4467209_-|SDR-family-oxidoreductase
MRALVTGCGRRLGFYLCEQLVAAGWQVTGSYRSERAELAHLRALGVELVQADFAVEGEVARLATALGAHDDLALIIHNASAFEPEADEPAAQLEQFEQFYRVHMAAPFQLNRALAPQLARQHNASIIHITDIYIHAPAPQFAAYVATKAGAHSLAMSFARELAPEVRVNTIEPGPILFLDEHGDAWRQQVLARTPLAREGGLEPIWQAVTLLMANDYMTGASIRVDGGRALAVI
>NZ_CP038444.1|WP_050504434.1|4465878_4466427_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MFYLCSIGSNLDPAQHVSQAVEELLARFGQLRLSSVIQTTPVGMRSHHDFLNCLFVVQSELSAAQLKAEFVTMELAHGRDRGNPLCKVTDRPLDIDILASHERDAFAGVGVDAYLGDLLAEMYEGGRVGAHKVTLRLRTSKVFAQQAFGQQPVALRQPTDERQELSAVPPDMPAHQATIRHH
>NZ_CP038444.1|WP_106885551.1|4465660_4465753_-|YnhF-family-membrane-protein
MSVEMKWALLTASGALAVILIICLASVGLA
>NZ_CP038444.1|WP_041207111.1|4475879_4476635_+|outer-membrane-protein-assembly-factor-BamD
MGKKSRLLMSLALVATLITGCSSTKPKVPDEPPEVLYQKARLKLDTGNYLNAIELLEALDSRYPFGAYSSQVQLDLIYAYYKQDDTAQAIANIDRFIRLNPAHKNIDYVFYMRGLTNMAADYNFFQDFLGIDRDDKDPSYARQAFQDFKTLLQNYPNSQYAADARARMVGLKTRLARYDLGVAEYYVKRDALIAAANRAKLVVETYPDTVETEKALEIMVNAYDTLKMPTLARHAREVLAKNYPDNRLGRG
>NZ_CP038444.1|WP_171269337.1|4476834_4478163_-|CoA-disulfide-reductase
MRIVIIGGEAAGMSAAAKARRLARDAEIVVYEASEVISFGACGLPYFVGDDFQEPGYMAEFTPEQFAAKGIEVKIGHRVLSLDAAAQTLRVEHKGDSFTDRYDRLMIATGAREQMPPIPGLQQQGVFGLRRMSDGLALKTAVQDPCSKKAVVIGSGFIGLEVVEALVHQGKEVRLIELADRVIPDAFDSEITQHIETELREQGVCLHLGERVQALLGEGRVSGVRTDQGEYEADIVVVCTGVRPNTEFLADTGIARLGNGAIKVDRQGRSSLANVWAAGDCASVWHSVKKQQVYVPLATIANKLGRMVGENLAGAEQEFPGTLGSAALKVLGLEAGRTGLSEQEAKAMGIDYRTVVIKDKCHTNYCPGQSDIHVKLVYEAGSKRLLGGQILGRKGAVHRIDALAVAITMGVTTEQLGMLDFAYAPPFSRTWDVLNVAGNVAK
>NZ_CP038444.1|WP_041206559.1|4478235_4479636_-|L-cystine-transporter
MTLSVIGNLAILVMLLLFLYRLQQTHVSFTRRVFSGLGLGVLFGWALQLLYGVGSEVLVQTGDYLDLVGSGYVKLLQMIIIPLIMVSIIGAILKLSGGTALGKISALTIGVLIFTTMIAAGAGILMSNLFGLSAEGLTAGAAETARGAALQTSLGSVESMSLAKMVLEFIPANPFLDMTGSRKTSTIAVVIFAIFIGLSATGIARKQPEIFASFERFMGVAHAIVMRMVTLVLRLTPYGVLALMAKVVSGSNYADIINLLNFVLASYGAIAIMFLVHLLLVSLVGINPLRFLKKIMPVLAFAFTSRTSAGSIPMNVQTQTRALGIPAGIANFAASFGATIGQNGCAGIYPAMLAVMIAPTVGVNPLDPGFIMTLIAIITVSSFGVAGVGGGATFAALIVLSALDFPVALAGLLISIEPLIDMGRTALNVSGSITAGTLTSRLMGQTDMAVFNGDAEVSLDGEESAV
>NZ_CP038444.1|WP_041206561.1|4479792_4481085_-|serine-dehydratase-subunit-alpha-family-protein
MKAQWTDFITLLKREVVPALGCTEPMSVALAAANCRKLLGQDPTRISVWVSGNLFKNGMGVGVPGTGMIGLPVAAAVGITGGNPDAGLEVLKTLTPQQVDAAKALLPIIQVDVKDVPDVLYAEVLAEADGHSARVVICTDHTRIVLLEKDGEVLMEQDSAPGVQIQPAKSDKPAMTLREIVAFALEVPLTEIAFIREAASMNQALADEGLQGYGLRIGKILTEQVERKLLSDDLMTLAMRLSSAASDARMDGAMLPAMSNSGSGNQGIAATMPVVAAARFLKADDEQLARALVMSHLVAIYIKAYQNKLSALCAASTAAMGSGAAITWLLGGQFEQISHCINNMIGDVSGIICDGAGSACSMKVSTSTSAAVKSSLMAINNLHVPQSEGIVSDDVDQTIANLGRLSKQGMLDTDIEIINIMRAKQQGKAG
>NZ_CP038444.1|WP_041206563.1|4481395_4482880_-|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta
MSQGLVTASYIVAAVLFILSLAGLSKQETAKHGNLFGIAGMAIALLATVFNPETSGVHWIILAMVIGGAIGVRLALKVEMTEMPELVAVLHSFVGMAAVLVGFNSFIDLHPSAPAEVVVSVGSNLDATLAAARAAFEQAASVAQVEHLSGAMLNIHLVEVFLGVFIGAVTFTGSVVAFGKLRGLISSKPLQLPHRHKLNLLAVVVSLALMIHFVNAGGSTFALLLMTLIAFAFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVVGALVGSSGAILSYIMCKAMNRSFISVIAGGFGSDGVASTADQEMGEYRETNAEDVADMLKNASSVIITPGYGMAVAQAQYPVAEITHKLRERGVKVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINEDFSDTDVVLVIGANDTVNPAAMEDPGSPIAGMPVLEVWKAQNVIGFKRSMNTGYAGVQNPLFFKENTQMLFGDAKASVEAILKAL
>NZ_CP038444.1|WP_171269338.1|4482891_4484418_-|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha
MQIGIPRESLAGETRVAATPATVEQLKKLGFEVAIEAGAGQLASFDDAAFEAAGASVVPSVWQADLIFKVNAPTDAEIAQIKDGATLVSFIWPAQNPELVKKLSERNINVMAMDMVPRISRAQSLDALSSMANIGGYRAVVEAAHQFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGTAGSLGAIVRAFDTRLEVAEQIESMGGEFLKLDFGGEDGASSDGYAKVMSDEFIKAEMELFAQQAKEVDIIITTALIPGRPAPKLITREMVDSMKPGSVIVDLAAATGGNCEYTKPTELFVTPNGVKVIGYTDLPGRLPAQSSQLYGTNLVNLMKLMCKEKDGNVAIDFEDVVQRNMTVIQAGEVTFPPPAIAVSAAPQKPAAAKPAAKKEEAKPSNKKFVFGALGIAAFGWVAAVAPAAFLSHFTVFILACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGSTLVTVLAFIAVLIASINIFGGFTVTQRMLKMFRKD
>NZ_CP038444.1|WP_171269339.1|4484924_4486088_-|alcohol-dehydrogenase
MHNFTLHTPTKVLFGKGQVAQLRGQIPADARILITYGGGSVVRSGLLAQIRHELAGMTLFEFGGIEPNPAYETLMGAVELARAERVDFLLAVGGGSVLDGTKFIAAAAHYDLAKEPWHILETVGGEVASAIPLGAVLTLPATGSEMNMGAVITRRSTGDKQHFFSPFVMPRFAVLDPVLTYTLPARQVANGVVDAFIHTLEQYLTYPVNAKVQDRFAEGLLLTLIEEGPKALVEPENYDVRANIMWSATLALNGLIGAGVPQDWATHMLGHELTALHGLDHAQTLAVVLPALLDAKREQKHAKLLQYAERVWDLRSGTEEERIDGAIAATRDFFERMGVKTRLRDYGLADANIDTLLAKLEEHGMTALGEHGDIDLVQSRHIYEAAW
>NZ_CP038444.1|WP_171269340.1|4486231_4487134_+|AraC-family-transcriptional-regulator
MSNRYADLAARLARHVTTPGITPSPVEQVNLIYTTEYHGRTPVLYQPRMIVILQGHKVGYLADQVFRYDPSHYLLMTLPLPCECECFASPEQPLIGFSLEINVATLQELLLELGDALPAPAPQKSGVHSVPLSEAMFCAAERLIALMDNPLHARVLGPQTVREMLFYALHEGGGPALQALANRHNHVGQIARVLRMIESRYADNLTMEELAREVNMSVSAFHHHFKAVTATSPLQYIKSFRLHKARMMMLHDGVKAGAAAARVGYESNSQFSREYKRFFGSTPTDQASRFRDGQLRIIEG
>NZ_CP038444.1|WP_171269341.1|4487150_4487663_+|lipocalin-family-protein
MRSLFCLLTALLLTACTGIADGIRPVTGFQLDRYLGTWYEIARLDHSFERGLERVSATYSRRDDGGVKVLNRGLQSDGSWREAEGKAYFIDKPDEARLKVSFFGPFYGGYNVIDLDPDYQLSLVTSYNHDYLWILSRSPNPPKEKVDALIAKAKGLGFATDRLIWVKQTP
>NZ_CP038444.1|WP_041206565.1|4487717_4489607_-|methyl-accepting-chemotaxis-protein
MTLSLRGKLLAASLGVVLLMAALLGIVAFHTLKSRTLGAIQSEAVNYGHAHSVAIGNWLADRRHAVNALTAVIADNPEATLVPYLLQTRTSGGFGLTYFGSVQGAMTRHDPSLNTANYDPRVRPWYQNATKAGKLIVTAPYVSVTMQQMVVTLAEPVSHQGQVIGVAGADLSLDDLIDEVLAMRVQGEGYAMLLDRSGLIVGHPQKALALKQVAELAPGLTGTTLEGWSRDGELHGATIAGREVLLSVQGVPGTDWLLAMVMYKDVLEAPFASLLWQLVGLTLVLLLVFSALLIAMFNYLFADLGRVSKALADIAHGEGDLTVQIVAQSRDEVGLLAQNFNLFVARLHGIVSRLRDVTVELAAQSRTQAAGAEERSQRVRQQQDEIVMVATAVTEMASATQEIAGNAEFAATTSGDAVRLAVAGQSQVGQSQRSISGLAGEVADASQTIHELDGHAHKISGILATISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTHDSTAEIQQMIEALQQTTRRAVGGMETSRQLAGTSVEDAEAANQSLARINEAIGAISDMATQIAAAAEEQTSVTGEISRNTENIRHVSQTLAEQAKVEAAQAAELKSLTERLEQEIGRFRL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP038444_6	6.1\|2852098\|34\|NZ_CP038444\|CRISPRCasFinder	2852098-2852131	34	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	203375-203408	10	0.706

1. spacer 6.1|2852098|34|NZ_CP038444|CRISPRCasFinder matches to NZ_CP054622 (Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence) position: , mismatch: 10, identity: 0.706

gccgaccttccgggccgacgcattaccctgagag	CRISPR spacer
cagcatcttccgggcggacgcatttccctgcttg	Protospacer
    *.********* ******** *****   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

684550 : 694526

uncultured_Mediterranean_phage(25.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042648740.1\|684550_685312_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-70	53.4
WP_005332743.1\|685316_685934_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.4e-34	46.4
WP_041205044.1\|685930_686512_+	DedA family protein	NA	NA	NA	NA
WP_041205045.1\|686521_687586_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7NU10	Lactobacillus_phage	4.9e-11	36.2
WP_005331913.1\|687632_688616_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.9e-34	33.7
WP_005331910.1\|688703_689717_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.1e-108	58.6
WP_005309452.1\|689896_690112_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_005331908.1\|690127_690571_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.0e-27	48.6
WP_005331907.1\|690659_692447_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.0e-74	41.4
WP_081805626.1\|692660_694526_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6

DBSCAN-SWA_2

745498 : 802508

uncultured_Caudovirales_phage(20.0%)

tRNA,integrase,transposase

attL 741130:741146|attR 799019:799035

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
741130:741146	attL	NA	NA	NA	NA
WP_041206812.1\|745498_746401_-\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_005329052.1\|746513_746963_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_005327571.1\|747088_747826_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA
WP_005327573.1\|747822_748368_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_042650421.1\|748604_751052_+	ATP-dependent helicase HrpB	A0A0G2Y9F4	Acanthamoeba_polyphaga_mimivirus	2.9e-27	27.8
WP_005327576.1\|751316_753638_+	penicillin-binding protein 1B	NA	NA	NA	NA
WP_042650422.1\|753680_754091_+	VOC family protein	NA	NA	NA	NA
WP_041205253.1\|754176_755514_+\|transposase	IS4-like element ISAeme15 family transposase	NA	NA	NA	NA
WP_042649474.1\|755613_755934_-	ligand-binding protein SH3	NA	NA	NA	NA
WP_042649475.1\|755921_756314_-	multidrug transporter	NA	NA	NA	NA
WP_042649476.1\|756472_757354_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_042649477.1\|757417_757933_-	DUF2937 family protein	NA	NA	NA	NA
WP_042649478.1\|758142_758859_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_042649479.1\|759105_760026_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_042649483.1\|760064_760889_-	hypothetical protein	NA	NA	NA	NA
WP_042649480.1\|761099_762386_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_042649481.1\|762608_764003_+	H(+)/Cl(-) exchange transporter ClcA	NA	NA	NA	NA
WP_042649482.1\|764090_764783_+	hypothetical protein	NA	NA	NA	NA
WP_025328177.1\|764872_765223_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	6.7e-26	49.5
WP_042649676.1\|771287_771920_+	LysE family translocator	NA	NA	NA	NA
WP_158196703.1\|772166_773384_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.6e-103	49.9
WP_158196705.1\|774439_774844_-	H-NS histone family protein	NA	NA	NA	NA
WP_158196706.1\|774926_775976_-	hypothetical protein	NA	NA	NA	NA
WP_158196707.1\|776362_776575_+	AlpA family phage regulatory protein	A0A1V0E8E5	Vibrio_phage	2.3e-05	35.9
WP_158196708.1\|776997_777972_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_024945142.1\|778118_778463_-	helix-turn-helix transcriptional regulator	A0A2H4J5G9	uncultured_Caudovirales_phage	1.5e-06	34.3
WP_158196709.1\|778744_779098_+	hypothetical protein	NA	NA	NA	NA
WP_042034774.1\|779109_779262_+	hypothetical protein	NA	NA	NA	NA
WP_158196710.1\|779273_779948_+	hypothetical protein	NA	NA	NA	NA
WP_158196711.1\|780035_780599_+	lecithin retinol acyltransferase family protein	NA	NA	NA	NA
WP_171269439.1\|780634_781060_+	DUF2787 family protein	NA	NA	NA	NA
WP_158196713.1\|781070_781499_+	hypothetical protein	NA	NA	NA	NA
WP_158196714.1\|781866_782364_+	DNA repair protein RadC	NA	NA	NA	NA
WP_158196715.1\|782360_782552_+	hypothetical protein	NA	NA	NA	NA
WP_158198333.1\|782666_782915_+	hypothetical protein	NA	NA	NA	NA
WP_158196716.1\|783031_783541_+	hypothetical protein	NA	NA	NA	NA
WP_158196717.1\|783537_783753_+	hypothetical protein	NA	NA	NA	NA
WP_158196718.1\|783749_784112_+	hypothetical protein	NA	NA	NA	NA
WP_029303521.1\|784191_784734_+	hypothetical protein	NA	NA	NA	NA
WP_158196719.1\|784735_785077_+	hypothetical protein	NA	NA	NA	NA
WP_158196720.1\|785109_785406_+	hypothetical protein	NA	NA	NA	NA
WP_158196721.1\|785495_785810_+	hypothetical protein	NA	NA	NA	NA
WP_042054148.1\|785884_786220_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_158196722.1\|786418_787848_-\|transposase	IS66-like element ISAeme23 family transposase	NA	NA	NA	NA
WP_171268589.1\|788567_790532_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	3.6e-20	35.6
WP_158196725.1\|790769_791931_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.1e-80	49.7
WP_171268590.1\|792103_794572_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	2.4e-13	30.1
WP_171268591.1\|794694_799965_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.1e-62	31.1
799019:799035	attR	NA	NA	NA	NA
WP_158196728.1\|799996_800746_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	7.3e-14	36.9
WP_158196729.1\|800999_802508_+\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1188379 : 1256338

Vibrio_phage(13.33%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012564931.1\|1188379_1189327_+\|transposase	IS30-like element ISAeca1 family transposase	Q9MBM9	Staphylococcus_prophage	1.0e-44	36.9
WP_171268664.1\|1189354_1190404_+	type IV pilus assembly protein PilM	NA	NA	NA	NA
WP_005329944.1\|1190391_1190961_+	PilN domain-containing protein	NA	NA	NA	NA
WP_171269444.1\|1191560_1192088_+	pilus assembly protein PilP	NA	NA	NA	NA
WP_171268665.1\|1192104_1194330_+	type IV pilus secretin PilQ family protein	R9TEZ5	Vibrio_phage	4.4e-14	21.9
WP_005329951.1\|1194521_1195040_+	shikimate kinase AroK	NA	NA	NA	NA
WP_171268666.1\|1195056_1196139_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_171268667.1\|1196128_1197673_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_042649565.1\|1197743_1198616_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L1V5	Vibrio_phage	4.2e-69	49.3
WP_041205203.1\|1198822_1199494_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_171268668.1\|1199483_1200149_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_041205201.1\|1200166_1201171_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_005329964.1\|1201294_1201510_+	hypothetical protein	NA	NA	NA	NA
WP_171268669.1\|1201879_1202461_+	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	9.2e-73	63.0
WP_171268670.1\|1202739_1203957_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	2.7e-26	27.3
WP_025326162.1\|1204032_1205052_+	arginine N-succinyltransferase	NA	NA	NA	NA
WP_171268671.1\|1205117_1206587_+	succinylglutamate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_171268672.1\|1206736_1207534_+	DUF1338 domain-containing protein	NA	NA	NA	NA
WP_171268673.1\|1207625_1208222_-	beta-phosphoglucomutase family hydrolase	A0A1D8KPI1	Synechococcus_phage	2.5e-09	26.7
WP_171268674.1\|1208344_1209757_+	MFS transporter	NA	NA	NA	NA
WP_171268675.1\|1209860_1210247_-	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_171268676.1\|1210308_1211229_-	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	9.6e-24	34.5
WP_171268677.1\|1211316_1211649_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_171268678.1\|1211931_1213764_+	SLC13 family permease	NA	NA	NA	NA
WP_171268679.1\|1215102_1216194_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_005330168.1\|1216428_1217025_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_171268680.1\|1217221_1219210_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_042652671.1\|1219305_1220253_-	ribose-phosphate pyrophosphokinase	A0A2K9L8D8	Tupanvirus	7.8e-45	37.7
WP_171269445.1\|1220478_1221366_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_162520188.1\|1221365_1221944_-	outer membrane lipoprotein LolB	NA	NA	NA	NA
WP_171268681.1\|1222069_1223329_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_171268682.1\|1223380_1224469_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	2.5e-07	38.5
WP_171268683.1\|1224468_1225302_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_043133018.1\|1225344_1225728_+	SirB2 family protein	NA	NA	NA	NA
WP_042649337.1\|1225739_1226540_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_171268684.1\|1226577_1227432_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	3.0e-48	40.2
WP_041205731.1\|1228117_1229386_-\|transposase	IS4-like element ISAeme3 family transposase	NA	NA	NA	NA
WP_005330139.1\|1230514_1230895_-	autonomous glycyl radical cofactor GrcA	A0A219YAN3	Aeromonas_phage	2.8e-30	59.5
WP_171268685.1\|1231486_1232173_+	uracil-DNA glycosylase	A0A0A7D9F8	Equid_alphaherpesvirus	4.3e-53	49.3
WP_041205240.1\|1232357_1232906_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_025326190.1\|1233002_1233182_-	DUF3545 family protein	NA	NA	NA	NA
WP_041206846.1\|1233375_1234326_-	transaldolase	A0A127KNC6	Cyanophage	2.7e-13	30.7
WP_041205244.1\|1235070_1236510_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_041205051.1\|1237862_1239200_+\|transposase	IS4-like element ISAeme15 family transposase	NA	NA	NA	NA
WP_171268686.1\|1239618_1240791_+	MFS transporter	NA	NA	NA	NA
WP_171269446.1\|1240809_1241823_+	HTH-type transcriptional regulator YidZ	NA	NA	NA	NA
WP_025326196.1\|1241850_1242273_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_171268687.1\|1242593_1243148_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_163136244.1\|1243343_1244294_-	glutathione synthase	NA	NA	NA	NA
WP_171268688.1\|1244345_1245077_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_171268689.1\|1245146_1245845_-	endonuclease	NA	NA	NA	NA
WP_171268690.1\|1245918_1246458_-\|protease	SprT family zinc-dependent metalloprotease	A0A060AI19	Cronobacter_phage	5.9e-05	28.0
WP_025326202.1\|1246526_1247678_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.7e-129	62.6
WP_171268691.1\|1248019_1250011_+	transketolase	NA	NA	NA	NA
WP_171269447.1\|1250510_1250786_+	hypothetical protein	NA	NA	NA	NA
WP_005327996.1\|1251971_1253390_+\|transposase	IS66-like element ISUnCu16 family transposase	NA	NA	NA	NA
WP_010676219.1\|1255240_1256338_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1460359 : 1485433

Helicobacter_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041205574.1\|1460359_1460785_-\|transposase	IS200/IS605-like element ISAeme8 family transposase	A0A1S5RHE3	Helicobacter_phage	4.9e-23	46.9
WP_041207020.1\|1460842_1461982_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SLN2	Escherichia_phage	6.1e-145	68.4
WP_005326910.1\|1462045_1463692_-	response regulator	NA	NA	NA	NA
WP_041205380.1\|1463969_1464395_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	3.9e-12	40.0
WP_041205253.1\|1464436_1465774_-\|transposase	IS4-like element ISAeme15 family transposase	NA	NA	NA	NA
WP_171268789.1\|1465879_1466914_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_041205381.1\|1467215_1467656_+	azurin	NA	NA	NA	NA
WP_041205382.1\|1467847_1468051_+	hypothetical protein	NA	NA	NA	NA
WP_005326904.1\|1468064_1468625_-	HutD family protein	NA	NA	NA	NA
WP_005326903.1\|1468889_1469858_+	nucleoside hydrolase	NA	NA	NA	NA
WP_005326902.1\|1469960_1470290_+	DUF3634 family protein	NA	NA	NA	NA
WP_005326901.1\|1470393_1471302_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005326900.1\|1471422_1471866_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_081805657.1\|1472366_1473440_+	cytochrome o ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_041205386.1\|1473443_1475420_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_005327189.1\|1475424_1476036_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_005327195.1\|1476035_1476365_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_005327197.1\|1476378_1477269_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_043133721.1\|1477549_1478911_+	MFS transporter	NA	NA	NA	NA
WP_043133720.1\|1478968_1479337_+	DUF1428 domain-containing protein	NA	NA	NA	NA
WP_041205051.1\|1479471_1480809_-\|transposase	IS4-like element ISAeme15 family transposase	NA	NA	NA	NA
WP_171269454.1\|1480932_1482036_-	YdcF family protein	NA	NA	NA	NA
WP_005332127.1\|1482185_1483079_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_081805658.1\|1483179_1483668_+	DMT family transporter	NA	NA	NA	NA
WP_041205449.1\|1483744_1484149_-\|transposase	IS200/IS605-like element ISAs26 family transposase	A0A1S5RHE3	Helicobacter_phage	1.1e-29	54.8
WP_021141234.1\|1484206_1485433_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	O80301	Enterobacteria_phage	7.7e-154	78.6

DBSCAN-SWA_5

1490717 : 1535686

Escherichia_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171268790.1\|1490717_1491731_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	5.4e-185	99.4
WP_043133450.1\|1492061_1492868_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_005323481.1\|1492864_1494058_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_081934677.1\|1494112_1495537_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.1e-38	41.3
WP_043133454.1\|1495596_1496610_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	4.4e-54	38.7
WP_005323478.1\|1496619_1497219_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-27	36.8
WP_005323477.1\|1497211_1498849_-	anthranilate synthase component 1	NA	NA	NA	NA
WP_005323476.1\|1499270_1500152_+	PHP domain-containing protein	NA	NA	NA	NA
WP_005323475.1\|1500281_1500902_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_171268791.1\|1500894_1501776_+	segregation/condensation protein A	NA	NA	NA	NA
WP_005323473.1\|1501811_1502384_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.1e-21	36.3
WP_005323472.1\|1502494_1503418_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_005323471.1\|1503673_1504537_+	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_042649757.1\|1504611_1505790_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_005323469.1\|1505907_1506567_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005323466.1\|1506666_1507308_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_041206082.1\|1507460_1508654_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_041206081.1\|1508671_1511821_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_041206080.1\|1511813_1513229_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_041205574.1\|1513792_1514218_-\|transposase	IS200/IS605-like element ISAeme8 family transposase	A0A1S5RHE3	Helicobacter_phage	4.9e-23	46.9
WP_041206863.1\|1514275_1515415_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SLN2	Escherichia_phage	7.2e-146	68.7
WP_041206078.1\|1516065_1517607_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.5e-125	46.4
WP_041206077.1\|1517621_1518377_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.6e-59	51.5
WP_005328262.1\|1519149_1519302_+	hypothetical protein	NA	NA	NA	NA
WP_041206074.1\|1519867_1520182_-	DNA-binding protein	NA	NA	NA	NA
WP_005328266.1\|1520187_1520523_-	addiction module protein	A0A141GEX6	Brucella_phage	2.0e-11	46.4
WP_171268792.1\|1520748_1521306_+	recombinase family protein	E5FFF9	Burkholderia_phage	6.0e-21	35.1
WP_005325174.1\|1522450_1522753_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_041205730.1\|1522752_1523118_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_103857963.1\|1523166_1524780_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.3e-39	31.0
WP_171268793.1\|1524929_1526543_+	hypothetical protein	NA	NA	NA	NA
WP_171268794.1\|1526539_1529047_+	hypothetical protein	NA	NA	NA	NA
WP_171268795.1\|1529476_1530037_-	ribonuclease HI	A0A2H4PRM3	Proteus_phage	1.3e-20	37.4
WP_171268796.1\|1530218_1531514_+	PAS domain-containing methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.1e-12	45.7
WP_171268797.1\|1532024_1532426_-	hypothetical protein	NA	NA	NA	NA
WP_171268798.1\|1532490_1534398_-	hypothetical protein	NA	NA	NA	NA
WP_171268799.1\|1534669_1535686_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	7.8e-168	92.0

DBSCAN-SWA_6

1579239 : 1631478

Escherichia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099369027.1\|1579239_1580256_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.9e-186	99.1
WP_005342491.1\|1580382_1581333_+\|transposase	IS1595-like element ISKpn3 family transposase	NA	NA	NA	NA
WP_171268825.1\|1581363_1581576_+	hypothetical protein	NA	NA	NA	NA
WP_171269456.1\|1581666_1583190_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_171268826.1\|1583203_1584586_+	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain	NA	NA	NA	NA
WP_171268827.1\|1584588_1585716_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_171268828.1\|1585708_1586707_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.2e-06	27.0
WP_088813959.1\|1587435_1588997_-\|transposase	IS3-like element ISAs20 family transposase	NA	NA	NA	NA
WP_001310555.1\|1589582_1590599_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_171269457.1\|1590998_1591274_+	hypothetical protein	NA	NA	NA	NA
WP_171268829.1\|1591267_1592323_+	EpsG family protein	NA	NA	NA	NA
WP_171268830.1\|1592324_1593428_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_171268831.1\|1593473_1594574_+	glycosyltransferase	NA	NA	NA	NA
WP_171268832.1\|1594591_1595629_+	polysaccharide biosynthesis protein	A0A1V0SJP4	Klosneuvirus	4.2e-36	33.7
WP_171268833.1\|1595631_1596513_+	SDR family oxidoreductase	A0A2L2DJC0	Acanthamoeba_polyphaga_mimivirus	6.6e-30	31.3
WP_171268834.1\|1596500_1597634_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	5.4e-109	51.6
WP_171268835.1\|1597630_1598839_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_171268836.1\|1599342_1600464_+	polysaccharide export protein	NA	NA	NA	NA
WP_171268837.1\|1600529_1600958_+	protein tyrosine phosphatase	NA	NA	NA	NA
WP_171268838.1\|1601020_1603198_+	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_001310555.1\|1603318_1604335_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_171268839.1\|1604872_1605544_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_171268840.1\|1605591_1606296_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_171268841.1\|1606292_1608377_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_171268842.1\|1608462_1610181_+	O-antigen ligase C-terminal domain-containing protein	NA	NA	NA	NA
WP_004576012.1\|1610226_1611645_-\|transposase	IS66-like element ISAs21 family transposase	NA	NA	NA	NA
WP_171269458.1\|1611913_1612348_+	hypothetical protein	NA	NA	NA	NA
WP_171268843.1\|1612522_1613176_+	DUF480 domain-containing protein	NA	NA	NA	NA
WP_171268844.1\|1613381_1617218_+	DEAD/DEAH box helicase	A0A160DHD3	Gordonia_phage	5.8e-46	29.0
WP_171268845.1\|1617313_1618207_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_005331430.1\|1618729_1618939_+	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_041206057.1\|1619211_1620228_+	succinylglutamate desuccinylase	NA	NA	NA	NA
WP_171268846.1\|1620489_1621587_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_005331436.1\|1621655_1622642_+	alpha-ketoacid dehydrogenase subunit beta	A0A0K0KW14	Prochlorococcus_phage	1.8e-07	28.8
WP_171268847.1\|1622736_1623837_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_005320244.1\|1624051_1624252_+	cold-shock protein	Q9AZD3	Lactococcus_phage	3.0e-15	59.4
WP_041206056.1\|1624347_1624644_+	hypothetical protein	NA	NA	NA	NA
WP_025327553.1\|1624630_1624879_-	TIGR02647 family protein	NA	NA	NA	NA
WP_041206055.1\|1625127_1625685_+	hypothetical protein	NA	NA	NA	NA
WP_005331447.1\|1625779_1626172_+	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_171269459.1\|1626258_1628064_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005331452.1\|1628201_1629095_-	EamA family transporter	NA	NA	NA	NA
WP_005331455.1\|1629309_1629498_+	hypothetical protein	NA	NA	NA	NA
WP_171268848.1\|1629789_1630194_-\|transposase	IS200/IS605-like element ISAs26 family transposase	A0A1S5RHE3	Helicobacter_phage	8.8e-30	54.8
WP_021141234.1\|1630251_1631478_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	O80301	Enterobacteria_phage	7.7e-154	78.6

DBSCAN-SWA_7

1727645 : 1790413

Catovirus(16.67%)

tRNA,integrase,transposase

attL 1724676:1724695|attR 1795770:1795789

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1724676:1724695	attL	NA	NA	NA	NA
WP_005342491.1\|1727645_1728596_+\|transposase	IS1595-like element ISKpn3 family transposase	NA	NA	NA	NA
WP_171268864.1\|1728830_1730036_+\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	6.5e-12	34.6
WP_034523852.1\|1730183_1730540_+	hypothetical protein	NA	NA	NA	NA
WP_025201450.1\|1730532_1730835_+	DUF1232 domain-containing protein	NA	NA	NA	NA
WP_042648291.1\|1730971_1731607_+	hypothetical protein	NA	NA	NA	NA
WP_005325880.1\|1731667_1732228_+	DUF2787 family protein	NA	NA	NA	NA
WP_171268865.1\|1732759_1733767_-	Fic family protein	D7RWK9	Brochothrix_phage	2.0e-06	24.2
WP_171268866.1\|1734283_1734433_-	hypothetical protein	NA	NA	NA	NA
WP_171268867.1\|1734673_1735297_+	glutathione S-transferase	NA	NA	NA	NA
WP_025327423.1\|1735503_1735752_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_171268868.1\|1735871_1736600_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_171268869.1\|1736596_1737310_-	DUF4269 domain-containing protein	NA	NA	NA	NA
WP_025327420.1\|1737299_1737797_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_171268870.1\|1738000_1739377_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	4.6e-46	25.4
WP_088813959.1\|1739879_1741440_+\|transposase	IS3-like element ISAs20 family transposase	NA	NA	NA	NA
WP_171268871.1\|1741690_1742068_-	hypothetical protein	NA	NA	NA	NA
WP_099368881.1\|1742066_1743083_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	2.2e-186	99.4
WP_171268872.1\|1743191_1743620_-	protein kinase	NA	NA	NA	NA
WP_010674210.1\|1743902_1745516_+\|transposase	IS1634-like element ISAs25 family transposase	NA	NA	NA	NA
WP_171268873.1\|1746898_1747939_+	diguanylate cyclase	G3MA91	Bacillus_virus	1.1e-12	38.3
WP_171268874.1\|1748052_1748340_+	hypothetical protein	NA	NA	NA	NA
WP_041204490.1\|1748603_1748858_-	hypothetical protein	NA	NA	NA	NA
WP_171269461.1\|1749236_1749947_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_025327412.1\|1750174_1750672_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_171268875.1\|1750778_1751786_-	DUF4401 domain-containing protein	NA	NA	NA	NA
WP_171268876.1\|1751879_1752818_-	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_106886435.1\|1754352_1754910_-	TMEM165/GDT1 family protein	NA	NA	NA	NA
WP_163149208.1\|1755166_1755496_-	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_171268877.1\|1755616_1755844_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_171268878.1\|1755840_1758111_+	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA
WP_163153777.1\|1758154_1758397_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_111912664.1\|1758500_1759772_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_139751448.1\|1760070_1761210_-	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_010675200.1\|1761265_1761622_-	DMT family protein	NA	NA	NA	NA
WP_171268879.1\|1761734_1762484_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_111912660.1\|1762570_1763578_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_171268880.1\|1763564_1764350_+	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	3.0e-10	27.8
WP_139745172.1\|1764726_1765794_-	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	4.6e-86	49.3
WP_171269462.1\|1765991_1766315_+	diacylglycerol kinase	NA	NA	NA	NA
WP_042648947.1\|1766413_1767646_-	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	3.1e-110	49.1
WP_005328069.1\|1767899_1768553_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_005328071.1\|1768724_1769321_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_005328073.1\|1769555_1770902_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_041206990.1\|1771223_1772036_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_041205988.1\|1772704_1773841_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.6e-49	33.3
WP_005328082.1\|1773857_1777082_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_041205987.1\|1777605_1779264_+	2-isopropylmalate synthase	NA	NA	NA	NA
WP_005328087.1\|1779321_1780410_-	sterol desaturase family protein	NA	NA	NA	NA
WP_171269463.1\|1780696_1781803_+	DUF1615 domain-containing protein	NA	NA	NA	NA
WP_042648946.1\|1781862_1782756_-	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	1.3e-20	29.3
WP_042648945.1\|1782797_1783763_-	hypothetical protein	NA	NA	NA	NA
WP_042648944.1\|1784110_1784761_+	DedA family protein	NA	NA	NA	NA
WP_005328097.1\|1785028_1786324_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	9.3e-49	31.7
WP_171268881.1\|1786405_1787044_+	DUF2913 family protein	NA	NA	NA	NA
WP_042648942.1\|1787365_1788406_+	peptidase M35	NA	NA	NA	NA
WP_042648941.1\|1788448_1788883_+	hypothetical protein	NA	NA	NA	NA
WP_012564931.1\|1789465_1790413_+\|transposase	IS30-like element ISAeca1 family transposase	Q9MBM9	Staphylococcus_prophage	1.0e-44	36.9
1795770:1795789	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2007289 : 2056867

Pseudomonas_phage(20.0%)

integrase,transposase

attL 2004731:2004761|attR 2024899:2024929

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2004731:2004761	attL	NA	NA	NA	NA
WP_171268907.1\|2007289_2008321_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_139039454.1\|2008340_2008508_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.6e-07	56.8
WP_005346574.1\|2008780_2009038_-	hypothetical protein	NA	NA	NA	NA
WP_171268908.1\|2009938_2010379_-	hypothetical protein	NA	NA	NA	NA
WP_171268909.1\|2010997_2011990_-	AAA family ATPase	A0A2P1CFH0	Microbacterium_phage	4.8e-05	23.8
WP_171268910.1\|2012146_2013856_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_109113091.1\|2013846_2014545_-	hypothetical protein	NA	NA	NA	NA
WP_059112249.1\|2014827_2015964_-\|integrase	site-specific integrase	I6PDJ1	Cronobacter_phage	6.1e-20	31.7
WP_041211597.1\|2017155_2017857_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_041211542.1\|2017951_2019061_-	alkene reductase	NA	NA	NA	NA
WP_050498234.1\|2019379_2019736_+	thiol reductase thioredoxin	NA	NA	NA	NA
WP_041211543.1\|2019900_2020695_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_081097825.1\|2020723_2021059_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_171268911.1\|2021154_2021709_+	OsmC family protein	NA	NA	NA	NA
WP_059112251.1\|2021809_2022376_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_050498235.1\|2023542_2024490_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041205604.1\|2025166_2025784_-	TPM domain-containing protein	NA	NA	NA	NA
2024899:2024929	attR	NA	NA	NA	NA
WP_171268912.1\|2025806_2026541_-	TPM domain-containing protein	NA	NA	NA	NA
WP_171268913.1\|2026537_2027143_-	LemA family protein	A0A1X9IGG1	Lactococcus_phage	6.3e-16	33.7
WP_171268914.1\|2027185_2027929_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_171268915.1\|2028093_2028636_+	hypothetical protein	NA	NA	NA	NA
WP_081805676.1\|2028847_2029126_+	RNA-binding protein	NA	NA	NA	NA
WP_171268916.1\|2029202_2030102_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
WP_042650278.1\|2030272_2030680_+	transcriptional regulator	A0A1C6ZDG7	Pseudomonas_phage	7.3e-08	45.7
WP_171268917.1\|2030752_2031460_+	short-chain dehydrogenase	NA	NA	NA	NA
WP_042650284.1\|2031546_2032563_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_042650276.1\|2032630_2033062_-	PAS domain-containing protein	NA	NA	NA	NA
WP_042650275.1\|2033168_2034185_-	response regulator	NA	NA	NA	NA
WP_005327789.1\|2034231_2035176_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041206904.1\|2035253_2035955_-	DUF2982 domain-containing protein	NA	NA	NA	NA
WP_171269468.1\|2036123_2038064_+	EAL domain-containing protein	G3MA91	Bacillus_virus	2.2e-17	33.7
WP_042650274.1\|2038217_2039780_+	AbgT family transporter	NA	NA	NA	NA
WP_042650273.1\|2039847_2040573_+	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
WP_042650272.1\|2040732_2041497_+	hypothetical protein	NA	NA	NA	NA
WP_042650271.1\|2041490_2042045_+	VOC family protein	NA	NA	NA	NA
WP_043133480.1\|2042057_2043278_-	MFS transporter	NA	NA	NA	NA
WP_171268918.1\|2043371_2044298_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005327814.1\|2044369_2044963_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.7e-42	47.1
WP_042649706.1\|2045225_2045918_+	(d)CMP kinase	NA	NA	NA	NA
WP_005327816.1\|2046011_2047682_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_005299934.1\|2047774_2048059_+	integration host factor subunit beta	A0A0H3UZA0	Geobacillus_virus	2.6e-12	38.9
WP_005327818.1\|2048215_2048500_+	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_042649707.1\|2048509_2049676_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_171268919.1\|2049827_2050526_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_171269469.1\|2050637_2051195_-	rhombosortase	NA	NA	NA	NA
WP_171268920.1\|2051181_2051826_+	DTW domain-containing protein	NA	NA	NA	NA
WP_171268921.1\|2051797_2052544_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.0e-84	67.1
WP_171268922.1\|2052605_2053277_+	7-carboxy-7-deazaguanine synthase QueE	A0A172PZV7	Pseudomonas_phage	8.3e-17	29.4
WP_005327834.1\|2053278_2053509_+	DUF3820 family protein	NA	NA	NA	NA
WP_171268923.1\|2053505_2054069_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_021141311.1\|2054551_2055688_+\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_021141311.1\|2055730_2056867_+\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

2062662 : 2117185

Stx2-converting_phage(25.0%)

integrase,transposase

attL 2086889:2086948|attR 2119066:2119156

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052816468.1\|2062662_2063646_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_080990079.1\|2064346_2065555_+\|integrase	site-specific integrase	A0A2H4JGM5	uncultured_Caudovirales_phage	2.9e-36	32.1
WP_052816466.1\|2065692_2066655_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_171268928.1\|2067663_2068680_+	AAA family ATPase	A0A2P1CFH0	Microbacterium_phage	3.8e-05	23.0
WP_012564931.1\|2073029_2073977_-\|transposase	IS30-like element ISAeca1 family transposase	Q9MBM9	Staphylococcus_prophage	1.0e-44	36.9
WP_171268929.1\|2074144_2074372_+	hypothetical protein	NA	NA	NA	NA
WP_005327996.1\|2076106_2077525_+\|transposase	IS66-like element ISUnCu16 family transposase	NA	NA	NA	NA
WP_171268930.1\|2078669_2079830_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_158657377.1\|2080197_2080989_-	hypothetical protein	NA	NA	NA	NA
WP_103261334.1\|2081230_2081662_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_103261335.1\|2082220_2083243_+	hypothetical protein	NA	NA	NA	NA
WP_171268931.1\|2084044_2086219_-	catalase/peroxidase HPI	NA	NA	NA	NA
2086889:2086948	attL	NA	NA	NA	NA
WP_021140688.1\|2087332_2088643_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_005329233.1\|2088642_2088897_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010674978.1\|2089398_2089647_+	hypothetical protein	NA	NA	NA	NA
WP_171269470.1\|2090139_2091354_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	6.7e-49	48.9
WP_171268932.1\|2091419_2091653_-	plasmid stabilization protein	NA	NA	NA	NA
WP_024941318.1\|2091731_2093090_-	Fic family protein	NA	NA	NA	NA
WP_021140686.1\|2093293_2093746_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_021140685.1\|2094077_2094656_+	hypothetical protein	NA	NA	NA	NA
WP_042060619.1\|2096065_2096467_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	4.8e-12	39.4
WP_042060615.1\|2096463_2096811_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.6e-56	89.6
WP_042060621.1\|2096841_2098392_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.4e-245	80.6
WP_171268933.1\|2099469_2102778_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010674971.1\|2103268_2103469_-	helix-turn-helix transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	1.5e-06	36.9
WP_021140683.1\|2103600_2103810_+	hypothetical protein	NA	NA	NA	NA
WP_010674969.1\|2103825_2105070_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	4.9e-39	29.1
WP_104453295.1\|2105191_2105944_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_010674967.1\|2106068_2106350_+	hypothetical protein	NA	NA	NA	NA
WP_171268934.1\|2106413_2107331_-	WYL domain-containing protein	NA	NA	NA	NA
WP_171268935.1\|2107432_2107579_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_171268936.1\|2107805_2108973_+\|transposase	IS3-like element ISAeme20 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.6e-69	46.4
WP_171268937.1\|2114640_2115588_-\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.8e-41	35.7
WP_099993964.1\|2116168_2117185_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	2.2e-186	99.4
2119066:2119156	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2232068 : 2248013

Bacillus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010676219.1\|2232068_2233166_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_052815568.1\|2234103_2234724_+	hypothetical protein	NA	NA	NA	NA
WP_171268956.1\|2234747_2236406_+	hypothetical protein	NA	NA	NA	NA
WP_171268957.1\|2236416_2237487_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_021141311.1\|2237906_2239043_+\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_171269472.1\|2239011_2240259_+	AAA family ATPase	G3MAX6	Bacillus_virus	2.1e-42	46.2
WP_012564931.1\|2240365_2241313_+\|transposase	IS30-like element ISAeca1 family transposase	Q9MBM9	Staphylococcus_prophage	1.0e-44	36.9
WP_171268958.1\|2241316_2242900_-\|transposase	IS1634-like element ISAs25 family transposase	NA	NA	NA	NA
WP_171268959.1\|2242993_2243161_+	hypothetical protein	NA	NA	NA	NA
WP_171268960.1\|2243153_2243936_+	hypothetical protein	NA	NA	NA	NA
WP_113978622.1\|2246471_2246786_-\|transposase	transposase	NA	NA	NA	NA
WP_099368947.1\|2246925_2248013_-\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

2445907 : 2457031

Hokovirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042648260.1\|2445907_2449834_-	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	4.1e-31	35.6
WP_005300715.1\|2449888_2450185_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.0e-11	35.6
WP_042648227.1\|2450188_2452576_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.4e-05	23.6
WP_042648226.1\|2452588_2453572_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	5.3e-36	38.2
WP_010674800.1\|2453896_2454253_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005315535.1\|2454267_2454465_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_041204270.1\|2454550_2455099_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.8e-14	37.2
WP_042648225.1\|2455102_2457031_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	9.7e-127	38.0

DBSCAN-SWA_12

2888984 : 2937635

Aeromonas_phage(85.42%)

terminase,bacteriocin,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171268996.1\|2888984_2890385_-	hypothetical protein	A0A1I9KFD9	Aeromonas_phage	3.2e-204	89.5
WP_043133153.1\|2890396_2890657_-\|bacteriocin	bacteriocin	A0A1I9KFI4	Aeromonas_phage	1.3e-10	81.0
WP_171268997.1\|2890656_2891037_-	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	1.7e-51	86.5
WP_171268998.1\|2891045_2891678_-	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	2.6e-84	78.3
WP_043133149.1\|2891686_2892046_-	hypothetical protein	A0A1I9KFI0	Aeromonas_phage	1.0e-50	79.1
WP_171268999.1\|2892045_2897430_-	DUF1983 domain-containing protein	A0A1I9KGC4	Aeromonas_phage	4.0e-45	42.4
WP_171269481.1\|2897429_2899037_-	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	1.1e-301	92.9
WP_171269000.1\|2899461_2901081_-	hypothetical protein	A0A1I9KFH7	Aeromonas_phage	4.3e-75	99.3
WP_171269001.1\|2901090_2901768_-	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	6.7e-123	96.0
WP_171269002.1\|2901780_2902362_-	hypothetical protein	A0A1I9KFD5	Aeromonas_phage	5.7e-107	99.0
WP_171269003.1\|2902363_2902801_-	hypothetical protein	A0A1I9KFH0	Aeromonas_phage	6.3e-58	90.3
WP_171269004.1\|2902867_2903257_-	hypothetical protein	A0A1I9KGB3	Aeromonas_phage	2.2e-62	95.3
WP_171269005.1\|2903324_2904542_-	DUF4043 family protein	A0A1I9KFC6	Aeromonas_phage	2.1e-223	94.6
WP_171269006.1\|2904613_2905540_-	hypothetical protein	A0A1I9KFD1	Aeromonas_phage	3.7e-148	89.9
WP_171269007.1\|2905841_2907968_-\|portal	portal protein	A0A1I9KFF7	Aeromonas_phage	0.0e+00	97.3
WP_171269008.1\|2907967_2909665_-\|terminase	terminase	A0A1I9KFB6	Aeromonas_phage	0.0e+00	97.3
WP_171269009.1\|2909724_2910414_-	hypothetical protein	NA	NA	NA	NA
WP_171269010.1\|2910456_2911326_-\|terminase	terminase	A0A1I9KFG9	Aeromonas_phage	2.0e-116	84.5
WP_171269011.1\|2911326_2911512_-	hypothetical protein	A0A1I9KFC1	Aeromonas_phage	3.1e-14	63.9
WP_171269012.1\|2911549_2912104_-	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	4.2e-14	41.6
WP_171269013.1\|2912103_2912595_-	lysozyme	A0A0M4S5S0	Caulobacter_phage	1.0e-08	33.3
WP_041215975.1\|2912591_2912804_-	hypothetical protein	NA	NA	NA	NA
WP_171269014.1\|2912933_2913236_-	hypothetical protein	NA	NA	NA	NA
WP_171269015.1\|2913235_2913430_-	DUF3283 family protein	NA	NA	NA	NA
WP_042880557.1\|2913553_2913976_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.4e-32	50.4
WP_171269016.1\|2913972_2915253_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	6.0e-133	57.8
WP_171269017.1\|2916546_2917245_-	hypothetical protein	A0A1I9KFB9	Aeromonas_phage	1.1e-109	91.4
WP_171269018.1\|2917241_2917664_-	hypothetical protein	A0A1I9KG18	Aeromonas_phage	2.3e-65	84.3
WP_171269019.1\|2917660_2917978_-	hypothetical protein	A0A1I9KFA7	Aeromonas_phage	8.9e-46	84.8
WP_171269020.1\|2917974_2918415_-	recombination protein NinB	A0A1I9KFA6	Aeromonas_phage	3.1e-73	93.8
WP_111896631.1\|2918411_2918705_-	hypothetical protein	A0A1I9KG94	Aeromonas_phage	1.6e-49	96.9
WP_171269021.1\|2918781_2919093_-	hypothetical protein	A0A1I9KFB1	Aeromonas_phage	8.5e-41	86.9
WP_043163247.1\|2919085_2920498_-	AAA family ATPase	Q716D2	Shigella_phage	5.1e-101	44.2
WP_171269022.1\|2920487_2921324_-	replication protein	A0A088CPU2	Enterobacteria_phage	9.6e-39	43.6
WP_109421920.1\|2921325_2921457_-	adenylate cyclase	NA	NA	NA	NA
WP_171269023.1\|2921449_2921605_-	hypothetical protein	A0A1I9KFA1	Aeromonas_phage	1.7e-18	78.0
WP_005310218.1\|2921658_2921877_-	hypothetical protein	A0A1I9KFG0	Aeromonas_phage	2.1e-30	97.2
WP_171269024.1\|2921880_2922270_-	hypothetical protein	A0A1I9KF96	Aeromonas_phage	1.6e-57	95.8
WP_171269025.1\|2922311_2923013_-	phage antirepressor KilAC domain-containing protein	A0A1I9KFA9	Aeromonas_phage	6.2e-124	97.0
WP_113736124.1\|2923046_2923274_-	hypothetical protein	NA	NA	NA	NA
WP_113736123.1\|2923403_2924015_+	LexA family transcriptional regulator	NA	NA	NA	NA
WP_171269026.1\|2924661_2924916_+	hypothetical protein	A0A1I9KF98	Aeromonas_phage	3.7e-26	83.3
WP_171269027.1\|2925228_2926008_+	sel1 repeat family protein	NA	NA	NA	NA
WP_171269028.1\|2926082_2926274_+	hypothetical protein	A0A1I9KG01	Aeromonas_phage	1.2e-21	88.7
WP_171269029.1\|2926276_2926642_+	hypothetical protein	A0A1I9KFC9	Aeromonas_phage	6.9e-42	76.0
WP_043129261.1\|2926638_2927484_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A1I9KFF5	Aeromonas_phage	1.5e-164	96.4
WP_171269030.1\|2927480_2928458_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	4.0e-185	96.9
WP_171269031.1\|2928506_2929595_+	hypothetical protein	A0A1I9KFA0	Aeromonas_phage	8.5e-96	92.1
WP_171268555.1\|2929644_2930862_+	hypothetical protein	A0A1I9KG78	Aeromonas_phage	8.5e-169	77.2
WP_171269032.1\|2930858_2930999_+	hypothetical protein	NA	NA	NA	NA
WP_171269033.1\|2930998_2931601_+	hypothetical protein	H9C0R1	Aeromonas_phage	8.1e-64	56.3
WP_043129267.1\|2931659_2931839_+	hypothetical protein	A0A1I9KFZ1	Aeromonas_phage	4.6e-23	88.1
WP_171269034.1\|2931859_2932771_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	1.4e-83	53.0
WP_171269035.1\|2932767_2933112_+	hypothetical protein	NA	NA	NA	NA
WP_171269036.1\|2934136_2934355_+	hypothetical protein	A0A1I9KF77	Aeromonas_phage	1.1e-34	97.2
WP_171269037.1\|2934399_2934711_+	DUF4406 domain-containing protein	A0A1I9KFD3	Aeromonas_phage	7.4e-53	99.0
WP_171269038.1\|2934746_2935034_+	hypothetical protein	NA	NA	NA	NA
WP_171269039.1\|2935008_2935671_+	hypothetical protein	NA	NA	NA	NA
WP_077096152.1\|2935807_2936212_+	hypothetical protein	A0A1I9KG69	Aeromonas_phage	3.4e-50	78.7
WP_171269040.1\|2936381_2937635_+	DUF3596 domain-containing protein	A0A1I9KF78	Aeromonas_phage	5.3e-142	59.7

DBSCAN-SWA_13

3301768 : 3343518

Escherichia_phage(25.0%)

integrase,transposase

attL 3301202:3301216|attR 3304282:3304296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3301202:3301216	attL	NA	NA	NA	NA
WP_010673972.1\|3301768_3303007_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	2.1e-114	48.9
WP_010673971.1\|3303069_3303474_-	H-NS histone family protein	NA	NA	NA	NA
WP_148248254.1\|3303829_3304078_-	hypothetical protein	NA	NA	NA	NA
WP_017783811.1\|3304155_3305172_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	6.4e-186	99.1
3304282:3304296	attR	NA	NA	NA	NA
WP_010674210.1\|3305255_3306869_-\|transposase	IS1634-like element ISAs25 family transposase	NA	NA	NA	NA
WP_171269232.1\|3307714_3308731_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	6.4e-186	99.1
WP_171269233.1\|3309059_3310013_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	2.4e-54	41.9
WP_171269234.1\|3310109_3311111_+	YqaJ viral recombinase family protein	A0A2H4JA52	uncultured_Caudovirales_phage	4.8e-45	38.2
WP_171269235.1\|3311107_3312046_+	hypothetical protein	NA	NA	NA	NA
WP_041212673.1\|3312047_3312395_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_042048597.1\|3312582_3313134_+	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_171269236.1\|3313686_3314049_+	hypothetical protein	NA	NA	NA	NA
WP_171269498.1\|3314259_3314784_+	hypothetical protein	NA	NA	NA	NA
WP_171269237.1\|3314868_3315429_+	lecithin retinol acyltransferase family protein	NA	NA	NA	NA
WP_099992304.1\|3315467_3315893_+	DUF2787 domain-containing protein	NA	NA	NA	NA
WP_171269238.1\|3315902_3316331_+	hypothetical protein	NA	NA	NA	NA
WP_171269239.1\|3316305_3316614_+	hypothetical protein	NA	NA	NA	NA
WP_021137991.1\|3316704_3317202_+	DNA repair protein RadC	NA	NA	NA	NA
WP_021137992.1\|3317198_3317390_+	hypothetical protein	NA	NA	NA	NA
WP_099994739.1\|3317504_3317753_+	hypothetical protein	NA	NA	NA	NA
WP_021137994.1\|3317920_3318430_+	hypothetical protein	NA	NA	NA	NA
WP_021137995.1\|3318426_3318642_+	hypothetical protein	NA	NA	NA	NA
WP_171269240.1\|3318638_3319001_+	hypothetical protein	NA	NA	NA	NA
WP_171269241.1\|3319081_3319624_+	hypothetical protein	NA	NA	NA	NA
WP_042044633.1\|3319625_3319973_+	hypothetical protein	NA	NA	NA	NA
WP_042044634.1\|3320202_3320925_+	hypothetical protein	NA	NA	NA	NA
WP_171269242.1\|3321002_3321494_+	hypothetical protein	NA	NA	NA	NA
WP_042044636.1\|3321595_3322753_+	hypothetical protein	NA	NA	NA	NA
WP_171269243.1\|3322818_3324297_+	hypothetical protein	NA	NA	NA	NA
WP_042044637.1\|3324315_3327384_+	virulence factor SrfB	NA	NA	NA	NA
WP_171269244.1\|3327380_3330068_+	hypothetical protein	NA	NA	NA	NA
WP_171269245.1\|3330073_3331207_+	hypothetical protein	NA	NA	NA	NA
WP_156991620.1\|3331305_3333177_+	VWA domain-containing protein	NA	NA	NA	NA
WP_042044643.1\|3333176_3333887_+	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	4.5e-05	25.3
WP_171269499.1\|3333912_3335088_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_084214672.1\|3335113_3336622_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_021141311.1\|3337980_3339117_+\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_042044646.1\|3340634_3340931_+	NINE protein	M4ZS56	Bacillus_phage	1.4e-16	68.2
WP_103857964.1\|3341188_3341491_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_041205730.1\|3341490_3341856_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_103857963.1\|3341904_3343518_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.3e-39	31.0

DBSCAN-SWA_14

4101037 : 4134984

Staphylococcus_prophage(16.67%)

tRNA,integrase,transposase

attL 4113769:4113782|attR 4140454:4140467

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012564931.1\|4101037_4101985_+\|transposase	IS30-like element ISAeca1 family transposase	Q9MBM9	Staphylococcus_prophage	1.0e-44	36.9
WP_171269504.1\|4101981_4102203_+	hypothetical protein	NA	NA	NA	NA
WP_042648823.1\|4102567_4103503_-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_042648824.1\|4103502_4103955_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_042648825.1\|4103951_4104455_-	signal peptidase II	NA	NA	NA	NA
WP_042648826.1\|4104454_4107316_-\|tRNA	isoleucine--tRNA ligase	A0A2K9L9X8	Tupanvirus	1.7e-79	26.4
WP_042648827.1\|4107315_4108290_-	bifunctional riboflavin kinase/FAD synthetase	A0A1V0SD03	Indivirus	8.1e-05	26.4
WP_042648828.1\|4108410_4109973_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_005308808.1\|4110164_4110428_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_005332359.1\|4110477_4110780_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005332358.1\|4110829_4111762_-	transcriptional activator NhaR	NA	NA	NA	NA
WP_171269505.1\|4111748_4112129_-	hypothetical protein	NA	NA	NA	NA
WP_042648830.1\|4112149_4113340_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	5.9e-90	51.1
4113769:4113782	attL	NA	NA	NA	NA
WP_042648831.1\|4115084_4115657_-	hypothetical protein	NA	NA	NA	NA
WP_005895552.1\|4115775_4115982_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_021141311.1\|4117457_4118594_-\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_004576012.1\|4119087_4120506_-\|transposase	IS66-like element ISAs21 family transposase	NA	NA	NA	NA
WP_005303890.1\|4120897_4121308_-	H-NS histone family protein	NA	NA	NA	NA
WP_082030024.1\|4121659_4121959_-	hypothetical protein	NA	NA	NA	NA
WP_042649219.1\|4122067_4122271_-	hypothetical protein	NA	NA	NA	NA
WP_171269506.1\|4122382_4122835_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_042865961.1\|4123310_4123691_-	diacylglycerol kinase	NA	NA	NA	NA
WP_042649073.1\|4123809_4125435_-	MCR-3-related phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_042649074.1\|4125501_4127124_-	phosphoethanolamine--lipid A transferase MCR-3.6	NA	NA	NA	NA
WP_033113892.1\|4127329_4127764_-	EamA family transporter	NA	NA	NA	NA
WP_099369027.1\|4127911_4128928_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.9e-186	99.1
WP_042650619.1\|4129347_4130181_-	thymidylate synthase	E5DV96	Deep-sea_thermophilic_phage	3.2e-95	61.0
WP_021141269.1\|4130177_4130660_-	hypothetical protein	NA	NA	NA	NA
WP_021141270.1\|4130656_4132672_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_171269299.1\|4132668_4134984_-\|integrase	site-specific integrase	NA	NA	NA	NA
4140454:4140467	attR	NA	NA	NA	NA

DBSCAN-SWA_15

4625178 : 4692837

Escherichia_phage(12.5%)

tRNA,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171269406.1\|4625178_4626195_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	1.9e-185	98.8
WP_171269407.1\|4626439_4626766_+	hypothetical protein	NA	NA	NA	NA
WP_163150025.1\|4626904_4628776_+	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_082030096.1\|4628787_4629645_+	copper resistance protein B	NA	NA	NA	NA
WP_042649739.1\|4629665_4630199_+	cupredoxin family protein	NA	NA	NA	NA
WP_171269408.1\|4631064_4632108_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_171269409.1\|4634654_4636010_-	heavy metal sensor histidine kinase	A0A1V0SGX0	Hokovirus	2.2e-08	25.9
WP_021140716.1\|4635999_4636686_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-30	34.5
WP_021140715.1\|4636877_4637201_-	hypothetical protein	NA	NA	NA	NA
WP_171269514.1\|4637409_4638954_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_171269410.1\|4638950_4642091_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_171269515.1\|4642186_4643479_+	outer membrane channel protein TolC	NA	NA	NA	NA
WP_042648953.1\|4644163_4644571_+	H-NS histone family protein	NA	NA	NA	NA
WP_171269411.1\|4644632_4644893_+	hypothetical protein	NA	NA	NA	NA
WP_171269516.1\|4644969_4646097_-	Fic family protein	D7RWK9	Brochothrix_phage	3.2e-05	28.8
WP_005895552.1\|4646498_4646705_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_163150055.1\|4646823_4647432_+	hypothetical protein	NA	NA	NA	NA
WP_021141311.1\|4648380_4649517_-\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_171269412.1\|4650357_4650822_+	dUTP diphosphatase	G0YQD9	Erwinia_phage	9.1e-31	50.0
WP_005323760.1\|4651206_4651803_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_005323762.1\|4651976_4652813_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_005323764.1\|4652943_4653132_-\|holin	holin	NA	NA	NA	NA
WP_171269413.1\|4653550_4655200_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_005323768.1\|4655351_4656833_-	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_005323770.1\|4657056_4657950_+	HTH-type transcriptional activator IlvY	NA	NA	NA	NA
WP_005323772.1\|4658052_4658244_+	hypothetical protein	NA	NA	NA	NA
WP_171269414.1\|4658335_4660909_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171269415.1\|4666621_4667146_-	menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA	NA	NA	NA
WP_005323940.1\|4667153_4668611_-	potassium transporter	NA	NA	NA	NA
WP_005323938.1\|4668647_4669265_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	5.5e-23	35.9
WP_005323936.1\|4669264_4670587_-	Xaa-Pro dipeptidase	NA	NA	NA	NA
WP_005323934.1\|4670783_4672721_+	acetoacetate--CoA ligase	NA	NA	NA	NA
WP_171269416.1\|4672925_4675073_+	fatty acid oxidation complex subunit alpha FadB	NA	NA	NA	NA
WP_041206712.1\|4675094_4676258_+	acetyl-CoA C-acyltransferase FadA	NA	NA	NA	NA
WP_005323928.1\|4676541_4677264_+	response regulator transcription factor	NA	NA	NA	NA
WP_042649914.1\|4677334_4678780_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_171269417.1\|4678785_4680042_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005323922.1\|4680087_4680279_-	hypothetical protein	NA	NA	NA	NA
WP_041206709.1\|4680450_4680696_+	sulfurtransferase TusA	A0A140XB86	Dickeya_phage	2.8e-07	72.2
WP_005323918.1\|4680717_4681062_+	RidA family protein	NA	NA	NA	NA
WP_005323916.1\|4681207_4681864_-	OmpA family lipoprotein	NA	NA	NA	NA
WP_005323913.1\|4682029_4682272_-	hypothetical protein	NA	NA	NA	NA
WP_005323912.1\|4682392_4682647_-	hypothetical protein	NA	NA	NA	NA
WP_139751735.1\|4683046_4683262_-	hypothetical protein	NA	NA	NA	NA
WP_171269418.1\|4683620_4684190_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_171269419.1\|4684378_4685302_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_171269420.1\|4685311_4687381_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_171269421.1\|4687519_4687966_+	hypothetical protein	NA	NA	NA	NA
WP_152952594.1\|4687962_4688406_+	hypothetical protein	A0A1W6JT96	Pseudomonas_phage	7.7e-11	32.6
WP_171269422.1\|4689077_4690028_+\|transposase	transposase	NA	NA	NA	NA
WP_171269423.1\|4690371_4690938_-	hypothetical protein	NA	NA	NA	NA
WP_171268556.1\|4691169_4691322_+	hypothetical protein	NA	NA	NA	NA
WP_171269424.1\|4691613_4692837_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP038444

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection